CoV-GLUE | Mutations | Mutation

CoV-GLUE Mutation: ORF = ORF1ab/nsp3 : CodonNum = 1211

Details of the codons used for the mutation across all lineages (CodonProp is the proportion each codon is used for this AA mutation):

ORFCodonNumMutORF1abMutMutTypeRefCodonMutCodonAACountCodonCountCodonPropGenome Position
ORF1ab/nsp31211K1211NK2029NnonsynaaGaaT519451560.9926846350-6352
ORF1ab/nsp31211K1211NK2029NnonsynaaGaaC5194380.007316136350-6352
ORF1ab/nsp31211K1211KK2029KsynaaGaaA3946394616350-6352
ORF1ab/nsp31211K1211EK2029EnonsynAagGag1481470.9932436350-6352
ORF1ab/nsp31211K1211EK2029EnonsynAaGGaA14810.006756766350-6352
ORF1ab/nsp31211K1211delK2029deldelAAG---13113116350-6352
ORF1ab/nsp31211K1211RK2029RnonsynaAgaGg13113116350-6352
ORF1ab/nsp31211K1211TK2029TnonsynaAgaCg62600.9677426350-6352
ORF1ab/nsp31211K1211TK2029TnonsynaAGaCT6220.03225816350-6352
ORF1ab/nsp31211K1211MK2029MnonsynaAgaTg535316350-6352
ORF1ab/nsp31211K1211QK2029QnonsynAagCag393916350-6352
ORF1ab/nsp31211K1211del2K2029del2delaAGa--232316350-6352
ORF1ab/nsp31211K1211XK2029XnonsynAagTag960.6666676350-6352
ORF1ab/nsp31211K1211XK2029XnonsynAaGTaA930.3333336350-6352
ORF1ab/nsp31211K1211IK2029InonsynaAGaTA530.66350-6352
ORF1ab/nsp31211K1211LK2029LnonsynAAgTTg530.66350-6352
ORF1ab/nsp31211K1211LK2029LnonsynAAGTTA520.46350-6352
ORF1ab/nsp31211K1211IK2029InonsynaAGaTT510.26350-6352
ORF1ab/nsp31211K1211IK2029InonsynaAGaTC510.26350-6352
ORF1ab/nsp31211K1211AK2029AnonsynAAGGCT3316350-6352
ORF1ab/nsp31211K1211YK2029YnonsynAaGTaT320.6666676350-6352
ORF1ab/nsp31211K1211YK2029YnonsynAaGTaC310.3333336350-6352
ORF1ab/nsp31211K1211SK2029SnonsynAAGTCT210.56350-6352
ORF1ab/nsp31211K1211SK2029SnonsynAAgTCg210.56350-6352
ORF1ab/nsp31211K1211CK2029CnonsynAAGTGC1116350-6352
ORF1ab/nsp31211K1211FK2029FnonsynAAGTTC1116350-6352
ORF1ab/nsp31211K1211DK2029DnonsynAaGGaT1116350-6352
ORF1ab/nsp31211K1211del1K2029del1delaaGaa-1116350-6352
ORF1ab/nsp31211K1211VK2029VnonsynAAGGTT1116350-6352

Details of the mutation no within lineages (LineageCodonProp is the proportion the codon is observed at, at this particular site, on each lineage):

ORFCodonNumMutRefCodonMutCodonCodonCountAACountLineageLineageCodonProp
ORF1ab/nsp31211K1211NaaGaaT51565194All0.000986
ORF1ab/nsp31211K1211NaaGaaC385194All0.000007
ORF1ab/nsp31211K1211KaaGaaA39463946All0.000755
ORF1ab/nsp31211K1211KaaGaaA26772677AY.40.004167
ORF1ab/nsp31211K1211NaaGaaT793793B.1.1.2770.601669
ORF1ab/nsp31211K1211KaaGaaA749749AY.1200.027847
ORF1ab/nsp31211K1211NaaGaaT719721B.1.1.70.000644
ORF1ab/nsp31211K1211NaaGaaC2721B.1.1.70.000002
ORF1ab/nsp31211K1211NaaGaaT304308AY.430.001347
ORF1ab/nsp31211K1211NaaGaaC4308AY.430.000018
ORF1ab/nsp31211K1211NaaGaaT278284AY.40.000433
ORF1ab/nsp31211K1211NaaGaaC6284AY.40.000009
ORF1ab/nsp31211K1211NaaGaaT267270B.1.617.20.001005
ORF1ab/nsp31211K1211NaaGaaC3270B.1.617.20.000011
ORF1ab/nsp31211K1211NaaGaaT220220AY.1030.001366
ORF1ab/nsp31211K1211NaaGaaT156156B.1.4290.003671
ORF1ab/nsp31211K1211NaaGaaT148150AY.250.00089
ORF1ab/nsp31211K1211NaaGaaC2150AY.250.000012
ORF1ab/nsp31211K1211EAagGag147148All0.000028
ORF1ab/nsp31211K1211EAaGGaA1148All0
ORF1ab/nsp31211K1211NaaGaaT135135AY.440.000822
ORF1ab/nsp31211K1211RaAgaGg131131All0.000025
ORF1ab/nsp31211K1211delAAG---131131All0.000025
ORF1ab/nsp31211K1211KaaGaaA130130B.1.20.001145
ORF1ab/nsp31211K1211NaaGaaT128128B.1.20.001127
ORF1ab/nsp31211K1211NaaGaaT111111AY.200.004314
ORF1ab/nsp31211K1211NaaGaaT105105B.1.1.2630.163551
ORF1ab/nsp31211K1211NaaGaaT9697B.10.000879
ORF1ab/nsp31211K1211NaaGaaC197B.10.000009
ORF1ab/nsp31211K1211NaaGaaT8586AY.30.000845
ORF1ab/nsp31211K1211NaaGaaC186AY.30.00001
ORF1ab/nsp31211K1211KaaGaaA6868AY.440.000414
ORF1ab/nsp31211K1211NaaGaaT6565AY.1020.001723
ORF1ab/nsp31211K1211NaaGaaT6464AY.420.002575
ORF1ab/nsp31211K1211TaAgaCg6062All0.000011
ORF1ab/nsp31211K1211TaAGaCT262All0
ORF1ab/nsp31211K1211NaaGaaT6161P.10.000961
ORF1ab/nsp31211K1211KaaGaaA5959B.1.1390.043255
ORF1ab/nsp31211K1211NaaGaaT5657B.1.3510.001665
ORF1ab/nsp31211K1211NaaGaaC157B.1.3510.00003
ORF1ab/nsp31211K1211NaaGaaT5454B.1.36.310.094571
ORF1ab/nsp31211K1211MaAgaTg5353All0.00001
ORF1ab/nsp31211K1211NaaGaaT5353B.1.5260.001246
ORF1ab/nsp31211K1211KaaGaaA5353B.1.617.20.0002
ORF1ab/nsp31211K1211NaaGaaT5252AY.710.024703
ORF1ab/nsp31211K1211NaaGaaT5050B.1.1.1760.021968
ORF1ab/nsp31211K1211EAagGag4848B.1.1.70.000043
ORF1ab/nsp31211K1211NaaGaaT3942B.1.1.5190.001549
ORF1ab/nsp31211K1211NaaGaaC342B.1.1.5190.000119
ORF1ab/nsp31211K1211NaaGaaT4040B.1.10.000726
ORF1ab/nsp31211K1211QAagCag3939All0.000007
ORF1ab/nsp31211K1211KaaGaaA3939B.1.1.70.000035
ORF1ab/nsp31211K1211NaaGaaT3838B.1.360.005544
ORF1ab/nsp31211K1211NaaGaaT3232B.1.1770.000421
ORF1ab/nsp31211K1211NaaGaaT2831B.1.1600.000873
ORF1ab/nsp31211K1211NaaGaaC331B.1.1600.000094
ORF1ab/nsp31211K1211NaaGaaT2929AY.98.10.001404
ORF1ab/nsp31211K1211NaaGaaT2828AY.4.20.000607
ORF1ab/nsp31211K1211NaaGaaT2626AY.1000.001196
ORF1ab/nsp31211K1211NaaGaaT2626AY.880.022989
ORF1ab/nsp31211K1211KaaGaaA2424AY.250.000144
ORF1ab/nsp31211K1211NaaGaaT2424AY.260.000679
ORF1ab/nsp31211K1211NaaGaaT2424B.1.2580.001597
ORF1ab/nsp31211K1211del2aAGa--2323All0.000004
ORF1ab/nsp31211K1211NaaGaaT2323AY.1110.004212
ORF1ab/nsp31211K1211NaaGaaT2323Q.10.002906
ORF1ab/nsp31211K1211NaaGaaT1920AY.390.00047
ORF1ab/nsp31211K1211NaaGaaC120AY.390.000025
ORF1ab/nsp31211K1211del2aAGa--2020AY.46.50.003968
ORF1ab/nsp31211K1211RaAgaGg1818B.1.617.20.000068
ORF1ab/nsp31211K1211NaaGaaT1717AY.1190.0006
ORF1ab/nsp31211K1211MaAgaTg1717B.1.1.3480.013535
ORF1ab/nsp31211K1211delAAG---1717B.1.617.20.000064
ORF1ab/nsp31211K1211EAagGag1616AY.440.000097
ORF1ab/nsp31211K1211NaaGaaT1616B.1.6210.001416
ORF1ab/nsp31211K1211RaAgaGg1515AY.1030.000093
ORF1ab/nsp31211K1211QAagCag1515B.1.617.10.001934
ORF1ab/nsp31211K1211NaaGaaT1515P.1.140.000717
ORF1ab/nsp31211K1211KaaGaaA1414AY.390.000346
ORF1ab/nsp31211K1211NaaGaaT1414AY.730.009315
ORF1ab/nsp31211K1211NaaGaaT1414B.1.1.2220.002856
ORF1ab/nsp31211K1211NaaGaaT1414B.1.5750.004248
ORF1ab/nsp31211K1211delAAG---1313AY.1000.000598
ORF1ab/nsp31211K1211RaAgaGg1313AY.290.000205
ORF1ab/nsp31211K1211NaaGaaT1313B.1.1.2140.000721
ORF1ab/nsp31211K1211NaaGaaT1212AY.1210.001624
ORF1ab/nsp31211K1211TaAgaCg1111B.1.1.70.00001
ORF1ab/nsp31211K1211RaAgaGg1111B.1.1.70.00001
ORF1ab/nsp31211K1211NaaGaaT1111B.1.110.30.007902
ORF1ab/nsp31211K1211delAAG---1111B.1.160.140.023305
ORF1ab/nsp31211K1211delAAG---1111B.1.177.30.083969
ORF1ab/nsp31211K1211EAagGag1111B.1.617.20.000041
ORF1ab/nsp31211K1211NaaGaaT1010AY.340.00097
ORF1ab/nsp31211K1211delAAG---1010AY.40.000016
ORF1ab/nsp31211K1211RaAgaGg1010AY.430.000044
ORF1ab/nsp31211K1211NaaGaaT1010AY.470.000311
ORF1ab/nsp31211K1211NaaGaaT1010AY.50.000206
ORF1ab/nsp31211K1211KaaGaaA1010AY.620.004357
ORF1ab/nsp31211K1211delAAG---1010B.1.1.70.000009
ORF1ab/nsp31211K1211KaaGaaA1010B.1.4000.00429
ORF1ab/nsp31211K1211NaaGaaT1010P.20.001866
ORF1ab/nsp31211K1211XAagTag69All0.000001
ORF1ab/nsp31211K1211XAaGTaA39All0.000001
ORF1ab/nsp31211K1211NaaGaaT99AY.290.000142
ORF1ab/nsp31211K1211NaaGaaT89AY.330.000534
ORF1ab/nsp31211K1211NaaGaaC19AY.330.000067
ORF1ab/nsp31211K1211KaaGaaA99AY.430.00004
ORF1ab/nsp31211K1211NaaGaaT99AY.610.000943
ORF1ab/nsp31211K1211NaaGaaT99B.1.1.2070.010638
ORF1ab/nsp31211K1211EAagGag99B.1.1.3170.003705
ORF1ab/nsp31211K1211NaaGaaT99B.1.4270.000454
ORF1ab/nsp31211K1211NaaGaaT99B.1.5950.002349
ORF1ab/nsp31211K1211NaaGaaT88AH.30.030418
ORF1ab/nsp31211K1211NaaGaaT88AY.140.000704
ORF1ab/nsp31211K1211NaaGaaT78AY.480.003256
ORF1ab/nsp31211K1211NaaGaaC18AY.480.000465
ORF1ab/nsp31211K1211NaaGaaT88AY.9.10.00067
ORF1ab/nsp31211K1211NaaGaaT88AY.910.005844
ORF1ab/nsp31211K1211NaaGaaT88B.1.1.280.00249
ORF1ab/nsp31211K1211NaaGaaT88B.1.1.4580.333333
ORF1ab/nsp31211K1211TaAgaCg88B.1.214.20.004796
ORF1ab/nsp31211K1211NaaGaaT88B.1.36.80.008
ORF1ab/nsp31211K1211QAagCag88B.1.617.20.00003
ORF1ab/nsp31211K1211NaaGaaT88P.1.160.002993
ORF1ab/nsp31211K1211NaaGaaT47AY.230.000279
ORF1ab/nsp31211K1211NaaGaaC37AY.230.000209
ORF1ab/nsp31211K1211NaaGaaT77AY.3.10.000597
ORF1ab/nsp31211K1211RaAgaGg77AY.40.000011
ORF1ab/nsp31211K1211NaaGaaT77AY.450.000852
ORF1ab/nsp31211K1211MaAgaTg77AY.7.20.003915
ORF1ab/nsp31211K1211NaaGaaT77AY.720.009524
ORF1ab/nsp31211K1211KaaGaaA77B.10.000064
ORF1ab/nsp31211K1211RaAgaGg77B.10.000064
ORF1ab/nsp31211K1211KaaGaaA77B.1.10.000127
ORF1ab/nsp31211K1211NaaGaaT77B.1.1.2910.005197
ORF1ab/nsp31211K1211TaAgaCg77B.1.1.3050.027027
ORF1ab/nsp31211K1211NaaGaaT77B.1.1.370.00135
ORF1ab/nsp31211K1211NaaGaaT77B.1.1.5210.037433
ORF1ab/nsp31211K1211NaaGaaT77B.1.1110.008226
ORF1ab/nsp31211K1211TaAgaCg77B.1.1600.000218
ORF1ab/nsp31211K1211NaaGaaT77B.1.177.440.003633
ORF1ab/nsp31211K1211RaAgaGg77B.1.177.780.067961
ORF1ab/nsp31211K1211NaaGaaT77B.1.2410.005682
ORF1ab/nsp31211K1211NaaGaaT77D.20.000525
ORF1ab/nsp31211K1211KaaGaaA66AY.1030.000037
ORF1ab/nsp31211K1211NaaGaaT66AY.1160.001721
ORF1ab/nsp31211K1211RaAgaGg66AY.250.000036
ORF1ab/nsp31211K1211XAaGTaA36AY.250.000018
ORF1ab/nsp31211K1211XAagTag36AY.250.000018
ORF1ab/nsp31211K1211NaaGaaT66B.1.1.3220.052632
ORF1ab/nsp31211K1211NaaGaaT66B.1.1.3560.051282
ORF1ab/nsp31211K1211NaaGaaT66B.1.1.4290.02765
ORF1ab/nsp31211K1211NaaGaaT66B.1.1040.02214
ORF1ab/nsp31211K1211NaaGaaT66B.1.2430.000418
ORF1ab/nsp31211K1211NaaGaaT66B.1.36.290.003104
ORF1ab/nsp31211K1211NaaGaaT66P.1.170.000971
ORF1ab/nsp31211K1211IaAGaTA35All0.000001
ORF1ab/nsp31211K1211LAAgTTg35All0.000001
ORF1ab/nsp31211K1211LAAGTTA25All0
ORF1ab/nsp31211K1211IaAGaTT15All0
ORF1ab/nsp31211K1211IaAGaTC15All0
ORF1ab/nsp31211K1211KaaGaaA55AY.1020.000133
ORF1ab/nsp31211K1211NaaGaaT55AY.1170.000423
ORF1ab/nsp31211K1211NaaGaaT55AY.1200.000186
ORF1ab/nsp31211K1211MaAgaTg55AY.250.00003
ORF1ab/nsp31211K1211LAAgTTg35AY.250.000018
ORF1ab/nsp31211K1211IaAGaTA35AY.250.000018
ORF1ab/nsp31211K1211LAAGTTA25AY.250.000012
ORF1ab/nsp31211K1211IaAGaTC15AY.250.000006
ORF1ab/nsp31211K1211IaAGaTT15AY.250.000006
ORF1ab/nsp31211K1211EAagGag55AY.3.10.000426
ORF1ab/nsp31211K1211NaaGaaT55AY.460.00052
ORF1ab/nsp31211K1211NaaGaaT55AY.60.000206
ORF1ab/nsp31211K1211NaaGaaT55AZ.30.007599
ORF1ab/nsp31211K1211EAagGag55B.1.20.000044
ORF1ab/nsp31211K1211MaAgaTg55B.1.20.000044
ORF1ab/nsp31211K1211NaaGaaT55B.1.2210.000355
ORF1ab/nsp31211K1211NaaGaaT55B.1.6090.002397
ORF1ab/nsp31211K1211NaaGaaT55M.10.116279
ORF1ab/nsp31211K1211KaaGaaA55P.10.000079
ORF1ab/nsp31211K1211RaAgaGg55P.10.000079
ORF1ab/nsp31211K1211NaaGaaT44AY.1180.000251
ORF1ab/nsp31211K1211KaaGaaA44AY.120.20.005141
ORF1ab/nsp31211K1211KaaGaaA44AY.260.000113
ORF1ab/nsp31211K1211NaaGaaT34AY.270.000194
ORF1ab/nsp31211K1211NaaGaaC14AY.270.000065
ORF1ab/nsp31211K1211NaaGaaT44AY.280.007561
ORF1ab/nsp31211K1211EAagGag34AY.30.00003
ORF1ab/nsp31211K1211EAaGGaA14AY.30.00001
ORF1ab/nsp31211K1211KaaGaaA44AY.4.50.00043
ORF1ab/nsp31211K1211KaaGaaA44AY.50.000083
ORF1ab/nsp31211K1211NaaGaaT44AY.530.00115
ORF1ab/nsp31211K1211NaaGaaT44AY.980.000316
ORF1ab/nsp31211K1211NaaGaaT44B.1.1.1530.004381
ORF1ab/nsp31211K1211NaaGaaT44B.1.1.2310.012384
ORF1ab/nsp31211K1211NaaGaaT44B.1.1.3110.001433
ORF1ab/nsp31211K1211NaaGaaT44B.1.1.3180.001207
ORF1ab/nsp31211K1211NaaGaaT44B.1.1.3280.067797
ORF1ab/nsp31211K1211NaaGaaT44B.1.1.4670.076923
ORF1ab/nsp31211K1211RaAgaGg44B.1.1770.000053
ORF1ab/nsp31211K1211delAAG---44B.1.1770.000053
ORF1ab/nsp31211K1211delAAG---44B.1.2340.000528
ORF1ab/nsp31211K1211NaaGaaT44B.1.3110.001098
ORF1ab/nsp31211K1211EAagGag44B.1.3890.004008
ORF1ab/nsp31211K1211MaAgaTg44B.1.4000.001716
ORF1ab/nsp31211K1211RaAgaGg44B.1.438.10.000429
ORF1ab/nsp31211K1211NaaGaaT44B.1.5250.000453
ORF1ab/nsp31211K1211NaaGaaT44B.1.5540.017621
ORF1ab/nsp31211K1211NaaGaaT44B.1.6370.000292
ORF1ab/nsp31211K1211NaaGaaT44C.120.028777
ORF1ab/nsp31211K1211NaaGaaT33A0.001161
ORF1ab/nsp31211K1211AAAGGCT33All0.000001
ORF1ab/nsp31211K1211YAaGTaT23All0
ORF1ab/nsp31211K1211YAaGTaC13All0
ORF1ab/nsp31211K1211NaaGaaT23AY.1100.000225
ORF1ab/nsp31211K1211NaaGaaC13AY.1100.000113
ORF1ab/nsp31211K1211NaaGaaT33AY.20.001068
ORF1ab/nsp31211K1211delAAG---33AY.250.000018
ORF1ab/nsp31211K1211KaaGaaA33AY.30.00003
ORF1ab/nsp31211K1211NaaGaaT33AY.360.000445
ORF1ab/nsp31211K1211delAAG---33AY.390.000074
ORF1ab/nsp31211K1211EAagGag33AY.39.10.000119
ORF1ab/nsp31211K1211EAagGag33AY.40.000005
ORF1ab/nsp31211K1211NaaGaaT33AY.4.50.000322
ORF1ab/nsp31211K1211EAagGag33AY.430.000013
ORF1ab/nsp31211K1211TaAgaCg33AY.440.000018
ORF1ab/nsp31211K1211NaaGaaT33AY.46.60.000217
ORF1ab/nsp31211K1211EAagGag33AY.470.000093
ORF1ab/nsp31211K1211NaaGaaT33AY.7.10.000338
ORF1ab/nsp31211K1211NaaGaaT33AY.750.000168
ORF1ab/nsp31211K1211NaaGaaT33AY.9.20.00011
ORF1ab/nsp31211K1211NaaGaaT33AY.940.001328
ORF1ab/nsp31211K1211KaaGaaA33AY.980.000237
ORF1ab/nsp31211K1211NaaGaaT33AY.99.20.000276
ORF1ab/nsp31211K1211NaaGaaT33B0.000383
ORF1ab/nsp31211K1211delAAG---33B.10.000027
ORF1ab/nsp31211K1211MaAgaTg33B.10.000027
ORF1ab/nsp31211K1211TaAgaCg33B.10.000027
ORF1ab/nsp31211K1211KaaGaaA33B.1.1.2980.002586
ORF1ab/nsp31211K1211NaaGaaT33B.1.1.2980.002586
ORF1ab/nsp31211K1211NaaGaaT33B.1.1.330.001263
ORF1ab/nsp31211K1211NaaGaaT33B.1.1.4340.001046
ORF1ab/nsp31211K1211NaaGaaT33B.1.1.630.001157
ORF1ab/nsp31211K1211MaAgaTg33B.1.1.70.000003
ORF1ab/nsp31211K1211QAagCag33B.1.1.70.000003
ORF1ab/nsp31211K1211NaaGaaT33B.1.120.024
ORF1ab/nsp31211K1211EAagGag33B.1.177.160.001993
ORF1ab/nsp31211K1211NaaGaaT33B.1.177.210.000229
ORF1ab/nsp31211K1211NaaGaaT33B.1.3260.022727
ORF1ab/nsp31211K1211EAagGag33B.1.4290.000071
ORF1ab/nsp31211K1211NaaGaaT33B.1.5960.000261
ORF1ab/nsp31211K1211NaaGaaT33B.1.5990.010949
ORF1ab/nsp31211K1211RaAgaGg33B.1.617.10.000387
ORF1ab/nsp31211K1211NaaGaaT33B.1.617.10.000387
ORF1ab/nsp31211K1211MaAgaTg33B.1.617.20.000011
ORF1ab/nsp31211K1211NaaGaaT33C.350.002322
ORF1ab/nsp31211K1211NaaGaaT23Q.80.00033
ORF1ab/nsp31211K1211NaaGaaC13Q.80.000165
ORF1ab/nsp31211K1211NaaGaaT33R.10.00027
ORF1ab/nsp31211K1211NaaGaaT22A.2.5.20.003145
ORF1ab/nsp31211K1211KaaGaaA22A.210.00554
ORF1ab/nsp31211K1211SAAGTCT12All0
ORF1ab/nsp31211K1211SAAgTCg12All0
ORF1ab/nsp31211K1211NaaGaaT22AY.10.000791
ORF1ab/nsp31211K1211EAagGag22AY.1020.000053
ORF1ab/nsp31211K1211TaAgaCg22AY.1050.001286
ORF1ab/nsp31211K1211KaaGaaA22AY.1180.000125
ORF1ab/nsp31211K1211NaaGaaT22AY.120.2.10.000997
ORF1ab/nsp31211K1211NaaGaaT22AY.130.000322
ORF1ab/nsp31211K1211TaAgaCg22AY.140.000176
ORF1ab/nsp31211K1211NaaGaaT22AY.160.000759
ORF1ab/nsp31211K1211NaaGaaT22AY.16.10.00094
ORF1ab/nsp31211K1211YAaGTaT12AY.250.000006
ORF1ab/nsp31211K1211YAaGTaC12AY.250.000006
ORF1ab/nsp31211K1211QAagCag22AY.390.000049
ORF1ab/nsp31211K1211NaaGaaT22AY.39.10.000079
ORF1ab/nsp31211K1211QAagCag22AY.40.000003
ORF1ab/nsp31211K1211NaaGaaT22AY.4.40.000818
ORF1ab/nsp31211K1211RaAgaGg22AY.400.001929
ORF1ab/nsp31211K1211KaaGaaA22AY.420.00008
ORF1ab/nsp31211K1211delAAG---22AY.440.000012
ORF1ab/nsp31211K1211KaaGaaA22AY.460.000208
ORF1ab/nsp31211K1211NaaGaaT12AY.46.20.000635
ORF1ab/nsp31211K1211NaaGaaC12AY.46.20.000635
ORF1ab/nsp31211K1211NaaGaaT22AY.690.000373
ORF1ab/nsp31211K1211NaaGaaT22AY.7.20.001119
ORF1ab/nsp31211K1211NaaGaaT22AY.740.000231
ORF1ab/nsp31211K1211NaaGaaT22AY.75.10.000361
ORF1ab/nsp31211K1211NaaGaaT22AY.810.003984
ORF1ab/nsp31211K1211KaaGaaA22AY.820.002714
ORF1ab/nsp31211K1211KaaGaaA22AY.840.000875
ORF1ab/nsp31211K1211NaaGaaT22AY.850.000854
ORF1ab/nsp31211K1211NaaGaaT22AY.90.000135
ORF1ab/nsp31211K1211EAagGag22AY.9.20.000073
ORF1ab/nsp31211K1211KaaGaaA22AY.9.20.000073
ORF1ab/nsp31211K1211NaaGaaT22AY.920.000575
ORF1ab/nsp31211K1211EAagGag22B.10.000018
ORF1ab/nsp31211K1211NaaGaaT22B.1.1.10.000653
ORF1ab/nsp31211K1211NaaGaaT22B.1.1.100.00223
ORF1ab/nsp31211K1211NaaGaaT22B.1.1.1590.009346
ORF1ab/nsp31211K1211NaaGaaT22B.1.1.250.001137
ORF1ab/nsp31211K1211KaaGaaA22B.1.1.2690.002706
ORF1ab/nsp31211K1211NaaGaaT22B.1.1.3060.000877
ORF1ab/nsp31211K1211NaaGaaT22B.1.1.3520.0625
ORF1ab/nsp31211K1211EAagGag22B.1.1.3540.008772
ORF1ab/nsp31211K1211NaaGaaT22B.1.1.3780.014599
ORF1ab/nsp31211K1211delAAG---22B.1.1.980.037037
ORF1ab/nsp31211K1211KaaGaaA22B.1.110.30.001437
ORF1ab/nsp31211K1211NaaGaaT22B.1.1280.001271
ORF1ab/nsp31211K1211EAagGag22B.1.1770.000026
ORF1ab/nsp31211K1211KaaGaaA22B.1.1770.000026
ORF1ab/nsp31211K1211NaaGaaT22B.1.177.100.001756
ORF1ab/nsp31211K1211TaAgaCg22B.1.177.210.000153
ORF1ab/nsp31211K1211NaaGaaT22B.1.177.730.001133
ORF1ab/nsp31211K1211delAAG---22B.1.177.830.002963
ORF1ab/nsp31211K1211delAAG---22B.1.2210.000142
ORF1ab/nsp31211K1211NaaGaaT22B.1.2400.000431
ORF1ab/nsp31211K1211delAAG---22B.1.2580.000133
ORF1ab/nsp31211K1211NaaGaaT22B.1.258.170.000208
ORF1ab/nsp31211K1211KaaGaaA22B.1.3510.000059
ORF1ab/nsp31211K1211EAagGag22B.1.360.000292
ORF1ab/nsp31211K1211NaaGaaT22B.1.36.170.000988
ORF1ab/nsp31211K1211RaAgaGg22B.1.36.200.033898
ORF1ab/nsp31211K1211NaaGaaT22B.1.36.380.003284
ORF1ab/nsp31211K1211NaaGaaT22B.1.3960.001411
ORF1ab/nsp31211K1211KaaGaaA22B.1.4290.000047
ORF1ab/nsp31211K1211delAAG---22B.1.4290.000047
ORF1ab/nsp31211K1211NaaGaaT22B.1.4700.002809
ORF1ab/nsp31211K1211TaAgaCg22B.1.5090.001732
ORF1ab/nsp31211K1211TaAgaCg12B.1.5610.000397
ORF1ab/nsp31211K1211TaAGaCT12B.1.5610.000397
ORF1ab/nsp31211K1211SAAGTCT12B.1.5610.000397
ORF1ab/nsp31211K1211SAAgTCg12B.1.5610.000397
ORF1ab/nsp31211K1211EAagGag22B.1.5990.007299
ORF1ab/nsp31211K1211TaAgaCg22B.1.617.10.000258
ORF1ab/nsp31211K1211NaaGaaT22B.1.6280.000705
ORF1ab/nsp31211K1211NaaGaaT22C.360.001821
ORF1ab/nsp31211K1211KaaGaaA22C.370.000232
ORF1ab/nsp31211K1211EAagGag22P.10.000032
ORF1ab/nsp31211K1211NaaGaaT22P.1.20.002312
ORF1ab/nsp31211K1211NaaGaaT22P.40.007605
ORF1ab/nsp31211K1211NaaGaaT11A.20.000662
ORF1ab/nsp31211K1211RaAgaGg11A.2.40.003367
ORF1ab/nsp31211K1211KaaGaaA11A.2.40.003367
ORF1ab/nsp31211K1211NaaGaaT11A.23.10.000704
ORF1ab/nsp31211K1211NaaGaaT11A.270.001656
ORF1ab/nsp31211K1211NaaGaaT11AD.20.000219
ORF1ab/nsp31211K1211DAaGGaT11All0
ORF1ab/nsp31211K1211FAAGTTC11All0
ORF1ab/nsp31211K1211del1aaGaa-11All0
ORF1ab/nsp31211K1211CAAGTGC11All0
ORF1ab/nsp31211K1211VAAGGTT11All0
ORF1ab/nsp31211K1211QAagCag11AY.1000.000046
ORF1ab/nsp31211K1211delAAG---11AY.1010.00049
ORF1ab/nsp31211K1211NaaGaaT11AY.1010.00049
ORF1ab/nsp31211K1211TaAgaCg11AY.1030.000006
ORF1ab/nsp31211K1211MaAgaTg11AY.1030.000006
ORF1ab/nsp31211K1211QAagCag11AY.1030.000006
ORF1ab/nsp31211K1211NaaGaaT11AY.1050.000643
ORF1ab/nsp31211K1211delAAG---11AY.1080.001103
ORF1ab/nsp31211K1211TaAgaCg11AY.1130.000142
ORF1ab/nsp31211K1211NaaGaaT11AY.1140.000231
ORF1ab/nsp31211K1211EAagGag11AY.1200.000037
ORF1ab/nsp31211K1211KaaGaaA11AY.1210.000135
ORF1ab/nsp31211K1211RaAgaGg11AY.160.00038
ORF1ab/nsp31211K1211KaaGaaA11AY.190.00114
ORF1ab/nsp31211K1211EAagGag11AY.20.000356
ORF1ab/nsp31211K1211NaaGaaT11AY.210.001898
ORF1ab/nsp31211K1211QAagCag11AY.230.00007
ORF1ab/nsp31211K1211delAAG---11AY.230.00007
ORF1ab/nsp31211K1211KaaGaaA11AY.230.00007
ORF1ab/nsp31211K1211QAagCag11AY.250.000006
ORF1ab/nsp31211K1211FAAGTTC11AY.250.000006
ORF1ab/nsp31211K1211EAagGag11AY.250.000006
ORF1ab/nsp31211K1211del1aaGaa-11AY.250.000006
ORF1ab/nsp31211K1211QAagCag11AY.260.000028
ORF1ab/nsp31211K1211KaaGaaA11AY.290.000016
ORF1ab/nsp31211K1211DAaGGaT11AY.30.00001
ORF1ab/nsp31211K1211NaaGaaT11AY.320.000532
ORF1ab/nsp31211K1211RaAgaGg11AY.330.000067
ORF1ab/nsp31211K1211delAAG---11AY.330.000067
ORF1ab/nsp31211K1211EAagGag11AY.350.000233
ORF1ab/nsp31211K1211RaAgaGg11AY.350.000233
ORF1ab/nsp31211K1211NaaGaaT11AY.350.000233
ORF1ab/nsp31211K1211NaaGaaT11AY.380.000499
ORF1ab/nsp31211K1211RaAgaGg11AY.390.000025
ORF1ab/nsp31211K1211TaAgaCg11AY.40.000002
ORF1ab/nsp31211K1211MaAgaTg11AY.40.000002
ORF1ab/nsp31211K1211TaAgaCg11AY.4.20.000022
ORF1ab/nsp31211K1211KaaGaaA11AY.4.30.000842
ORF1ab/nsp31211K1211KaaGaaA11AY.410.000294
ORF1ab/nsp31211K1211MaAgaTg11AY.430.000004
ORF1ab/nsp31211K1211delAAG---11AY.430.000004
ORF1ab/nsp31211K1211RaAgaGg11AY.440.000006
ORF1ab/nsp31211K1211RaAgaGg11AY.450.000122
ORF1ab/nsp31211K1211EAagGag11AY.460.000104
ORF1ab/nsp31211K1211NaaGaaT11AY.46.40.000165
ORF1ab/nsp31211K1211NaaGaaT11AY.46.50.000198
ORF1ab/nsp31211K1211KaaGaaA11AY.46.60.000072
ORF1ab/nsp31211K1211RaAgaGg11AY.46.60.000072
ORF1ab/nsp31211K1211EAagGag11AY.46.60.000072
ORF1ab/nsp31211K1211KaaGaaA11AY.470.000031
ORF1ab/nsp31211K1211delAAG---11AY.470.000031
ORF1ab/nsp31211K1211KaaGaaA11AY.480.000465
ORF1ab/nsp31211K1211NaaGaaT11AY.490.003195
ORF1ab/nsp31211K1211delAAG---11AY.490.003195
ORF1ab/nsp31211K1211QAagCag11AY.50.000021
ORF1ab/nsp31211K1211NaaGaaT11AY.510.000909
ORF1ab/nsp31211K1211NaaGaaT11AY.540.000095
ORF1ab/nsp31211K1211NaaGaaT11AY.550.000917
ORF1ab/nsp31211K1211KaaGaaA11AY.610.000105
ORF1ab/nsp31211K1211NaaGaaT11AY.630.000387
ORF1ab/nsp31211K1211delAAG---11AY.660.00107
ORF1ab/nsp31211K1211TaAgaCg11AY.690.000187
ORF1ab/nsp31211K1211delAAG---11AY.740.000116
ORF1ab/nsp31211K1211NaaGaaT11AY.790.001211
ORF1ab/nsp31211K1211NaaGaaT11AY.840.000437
ORF1ab/nsp31211K1211NaaGaaT11AY.950.000761
ORF1ab/nsp31211K1211delAAG---11AY.990.001049
ORF1ab/nsp31211K1211NaaGaaT11AY.990.001049
ORF1ab/nsp31211K1211KaaGaaA11AY.99.20.000092
ORF1ab/nsp31211K1211VAAGGTT11B.10.000009
ORF1ab/nsp31211K1211AAAGGCT11B.10.000009
ORF1ab/nsp31211K1211RaAgaGg11B.1.10.000018
ORF1ab/nsp31211K1211delAAG---11B.1.1.100.001115
ORF1ab/nsp31211K1211NaaGaaT11B.1.1.1210.002427
ORF1ab/nsp31211K1211NaaGaaT11B.1.1.1340.011364
ORF1ab/nsp31211K1211delAAG---11B.1.1.1590.004673
ORF1ab/nsp31211K1211NaaGaaT11B.1.1.160.055556
ORF1ab/nsp31211K1211NaaGaaT11B.1.1.1890.001513
ORF1ab/nsp31211K1211delAAG---11B.1.1.2140.000055
ORF1ab/nsp31211K1211NaaGaaT11B.1.1.2290.005747
ORF1ab/nsp31211K1211NaaGaaT11B.1.1.2410.00207
ORF1ab/nsp31211K1211EAagGag11B.1.1.280.000311
ORF1ab/nsp31211K1211NaaGaaT11B.1.1.2940.001266
ORF1ab/nsp31211K1211delAAG---11B.1.1.3050.003861
ORF1ab/nsp31211K1211NaaGaaT11B.1.1.3070.002532
ORF1ab/nsp31211K1211AAAGGCT11B.1.1.3150.008475
ORF1ab/nsp31211K1211NaaGaaT11B.1.1.3260.001761
ORF1ab/nsp31211K1211delAAG---11B.1.1.3480.000796
ORF1ab/nsp31211K1211NaaGaaT11B.1.1.3540.004386
ORF1ab/nsp31211K1211NaaGaaT11B.1.1.3970.002252
ORF1ab/nsp31211K1211KaaGaaA11B.1.1.4340.000349
ORF1ab/nsp31211K1211EAagGag11B.1.1.4340.000349
ORF1ab/nsp31211K1211NaaGaaT11B.1.1.4380.05
ORF1ab/nsp31211K1211NaaGaaT11B.1.1.4420.018519
ORF1ab/nsp31211K1211delAAG---11B.1.1.5190.00004
ORF1ab/nsp31211K1211TaAgaCg11B.1.1.5190.00004
ORF1ab/nsp31211K1211KaaGaaA11B.1.1.5190.00004
ORF1ab/nsp31211K1211delAAG---11B.1.1.5240.020833
ORF1ab/nsp31211K1211AAAGGCT11B.1.1.70.000001
ORF1ab/nsp31211K1211NaaGaaT11B.1.1.700.000341
ORF1ab/nsp31211K1211NaaGaaT11B.1.1.980.018519
ORF1ab/nsp31211K1211MaAgaTg11B.1.1180.006711
ORF1ab/nsp31211K1211NaaGaaT11B.1.1310.008772
ORF1ab/nsp31211K1211MaAgaTg11B.1.1600.000031
ORF1ab/nsp31211K1211RaAgaGg11B.1.1600.000031
ORF1ab/nsp31211K1211NaaGaaT11B.1.160.280.002924
ORF1ab/nsp31211K1211NaaGaaT11B.1.1640.014925
ORF1ab/nsp31211K1211MaAgaTg11B.1.1770.000013
ORF1ab/nsp31211K1211NaaGaaT11B.1.177.120.000152
ORF1ab/nsp31211K1211NaaGaaT11B.1.177.410.0025
ORF1ab/nsp31211K1211delAAG---11B.1.177.450.000381
ORF1ab/nsp31211K1211RaAgaGg11B.1.177.50.001242
ORF1ab/nsp31211K1211NaaGaaT11B.1.177.600.000218
ORF1ab/nsp31211K1211delAAG---11B.1.177.620.001192
ORF1ab/nsp31211K1211delAAG---11B.1.177.810.000189
ORF1ab/nsp31211K1211TaAgaCg11B.1.177.830.001481
ORF1ab/nsp31211K1211del2aAGa--11B.1.177.830.001481
ORF1ab/nsp31211K1211KaaGaaA11B.1.177.860.000183
ORF1ab/nsp31211K1211delAAG---11B.1.20.000009
ORF1ab/nsp31211K1211QAagCag11B.1.20.000009
ORF1ab/nsp31211K1211XAagTag11B.1.20.000009
ORF1ab/nsp31211K1211EAagGag11B.1.2030.0625
ORF1ab/nsp31211K1211NaaGaaT11B.1.2100.002132
ORF1ab/nsp31211K1211EAagGag11B.1.2100.002132
ORF1ab/nsp31211K1211NaaGaaT11B.1.214.20.0006
ORF1ab/nsp31211K1211NaaGaaT11B.1.2320.000537
ORF1ab/nsp31211K1211NaaGaaT11B.1.2340.000132
ORF1ab/nsp31211K1211RaAgaGg11B.1.2430.00007
ORF1ab/nsp31211K1211NaaGaaT11B.1.2470.014925
ORF1ab/nsp31211K1211KaaGaaA11B.1.2580.000067
ORF1ab/nsp31211K1211delAAG---11B.1.258.170.000104
ORF1ab/nsp31211K1211NaaGaaT11B.1.2600.003344
ORF1ab/nsp31211K1211NaaGaaT11B.1.2770.02381
ORF1ab/nsp31211K1211NaaGaaT11B.1.2980.002114
ORF1ab/nsp31211K1211NaaGaaT11B.1.3050.002151
ORF1ab/nsp31211K1211NaaGaaT11B.1.3090.047619
ORF1ab/nsp31211K1211KaaGaaA11B.1.3110.000275
ORF1ab/nsp31211K1211EAagGag11B.1.3110.000275
ORF1ab/nsp31211K1211NaaGaaT11B.1.3130.006579
ORF1ab/nsp31211K1211NaaGaaT11B.1.3490.000715
ORF1ab/nsp31211K1211RaAgaGg11B.1.3510.00003
ORF1ab/nsp31211K1211EAagGag11B.1.3510.00003
ORF1ab/nsp31211K1211NaaGaaT11B.1.351.20.000303
ORF1ab/nsp31211K1211NaaGaaT11B.1.351.30.000876
ORF1ab/nsp31211K1211NaaGaaT11B.1.351.50.0006
ORF1ab/nsp31211K1211delAAG---11B.1.360.000146
ORF1ab/nsp31211K1211QAagCag11B.1.360.000146
ORF1ab/nsp31211K1211NaaGaaT11B.1.36.10.00114
ORF1ab/nsp31211K1211NaaGaaT11B.1.36.180.00042
ORF1ab/nsp31211K1211NaaGaaT11B.1.36.240.006173
ORF1ab/nsp31211K1211NaaGaaC11B.1.36.270.000763
ORF1ab/nsp31211K1211KaaGaaA11B.1.36.360.000602
ORF1ab/nsp31211K1211NaaGaaT11B.1.36.70.004
ORF1ab/nsp31211K1211KaaGaaA11B.1.3690.000285
ORF1ab/nsp31211K1211NaaGaaT11B.1.3780.006849
ORF1ab/nsp31211K1211NaaGaaT11B.1.3810.007812
ORF1ab/nsp31211K1211delAAG---11B.1.3820.008929
ORF1ab/nsp31211K1211NaaGaaT11B.1.3980.002976
ORF1ab/nsp31211K1211NaaGaaT11B.1.4000.000429
ORF1ab/nsp31211K1211NaaGaaT11B.1.4240.008065
ORF1ab/nsp31211K1211NaaGaaT11B.1.4250.002994
ORF1ab/nsp31211K1211RaAgaGg11B.1.4290.000024
ORF1ab/nsp31211K1211NaaGaaT11B.1.4560.003268
ORF1ab/nsp31211K1211TaAGaCT11B.1.4620.007246
ORF1ab/nsp31211K1211NaaGaaT11B.1.4680.005714
ORF1ab/nsp31211K1211NaaGaaT11B.1.4690.00361
ORF1ab/nsp31211K1211RaAgaGg11B.1.4820.083333
ORF1ab/nsp31211K1211NaaGaaT11B.1.5030.002488
ORF1ab/nsp31211K1211delAAG---11B.1.5250.000113
ORF1ab/nsp31211K1211KaaGaaA11B.1.5250.000113
ORF1ab/nsp31211K1211delAAG---11B.1.5260.000024
ORF1ab/nsp31211K1211NaaGaaT11B.1.5300.007143
ORF1ab/nsp31211K1211NaaGaaT11B.1.5600.00463
ORF1ab/nsp31211K1211XAagTag11B.1.5610.000397
ORF1ab/nsp31211K1211NaaGaaT11B.1.5610.000397
ORF1ab/nsp31211K1211YAaGTaT11B.1.5610.000397
ORF1ab/nsp31211K1211NaaGaaT11B.1.5640.000426
ORF1ab/nsp31211K1211NaaGaaT11B.1.5670.003333
ORF1ab/nsp31211K1211NaaGaaT11B.1.5770.000687
ORF1ab/nsp31211K1211NaaGaaT11B.1.5820.000491
ORF1ab/nsp31211K1211KaaGaaA11B.1.5880.00091
ORF1ab/nsp31211K1211RaAgaGg11B.1.5960.000087
ORF1ab/nsp31211K1211NaaGaaT11B.1.596.10.009346
ORF1ab/nsp31211K1211TaAgaCg11B.1.6020.006536
ORF1ab/nsp31211K1211del2aAGa--11B.1.617.20.000004
ORF1ab/nsp31211K1211NaaGaaT11B.1.6180.004032
ORF1ab/nsp31211K1211NaaGaaT11B.1.6200.000946
ORF1ab/nsp31211K1211NaaGaaT11B.1.6250.002353
ORF1ab/nsp31211K1211delAAG---11B.1.6300.005236
ORF1ab/nsp31211K1211NaaGaaT11B.1.9.50.005682
ORF1ab/nsp31211K1211QAagCag11B.110.005128
ORF1ab/nsp31211K1211NaaGaaT11B.110.005128
ORF1ab/nsp31211K1211RaAgaGg11B.30.000831
ORF1ab/nsp31211K1211NaaGaaT11B.4.50.011905
ORF1ab/nsp31211K1211NaaGaaT11B.400.000364
ORF1ab/nsp31211K1211NaaGaaT11B.60.00091
ORF1ab/nsp31211K1211NaaGaaT11C.170.055556
ORF1ab/nsp31211K1211del2aAGa--11C.20.016129
ORF1ab/nsp31211K1211CAAGTGC11C.350.000774
ORF1ab/nsp31211K1211NaaGaaC11C.36.10.004149
ORF1ab/nsp31211K1211NaaGaaT11C.36.20.034483
ORF1ab/nsp31211K1211NaaGaaT11K.10.02381
ORF1ab/nsp31211K1211NaaGaaT11N.100.029412
ORF1ab/nsp31211K1211delAAG---11P.10.000016
ORF1ab/nsp31211K1211NaaGaaT11P.1.10.000318
ORF1ab/nsp31211K1211delAAG---11P.1.10.000318
ORF1ab/nsp31211K1211NaaGaaT11P.1.120.000484
ORF1ab/nsp31211K1211XAagTag11P.1.140.000048
ORF1ab/nsp31211K1211TaAgaCg11P.1.140.000048
ORF1ab/nsp31211K1211NaaGaaT11P.1.70.000319
ORF1ab/nsp31211K1211delAAG---11P.20.000187
ORF1ab/nsp31211K1211TaAgaCg11P.20.000187
ORF1ab/nsp31211K1211KaaGaaA11P.20.000187
ORF1ab/nsp31211K1211NaaGaaT11P.60.003145
ORF1ab/nsp31211K1211KaaGaaA11Q.80.000165