CoV-GLUE | Mutations | Mutation
Details of the codons used for the mutation across all lineages (CodonProp is the proportion each codon is used for this AA mutation):
ORF | CodonNum | Mut | ORF1abMut | MutType | RefCodon | MutCodon | AACount | CodonCount | CodonProp | Genome Position |
ORF1ab/nsp3 | 1210 | L1210L | L2028L | syn | Ctg | Ttg | 7721 | 4134 | 0.535423 | 6347-6349 |
ORF1ab/nsp3 | 1210 | L1210L | L2028L | syn | ctG | ctT | 7721 | 3005 | 0.389198 | 6347-6349 |
ORF1ab/nsp3 | 1210 | L1210L | L2028L | syn | ctG | ctA | 7721 | 526 | 0.0681259 | 6347-6349 |
ORF1ab/nsp3 | 1210 | L1210L | L2028L | syn | ctG | ctC | 7721 | 52 | 0.00673488 | 6347-6349 |
ORF1ab/nsp3 | 1210 | L1210L | L2028L | syn | CtG | TtA | 7721 | 4 | 0.000518068 | 6347-6349 |
ORF1ab/nsp3 | 1210 | L1210del | L2028del | del | CTG | --- | 107 | 107 | 1 | 6347-6349 |
ORF1ab/nsp3 | 1210 | L1210P | L2028P | nonsyn | cTg | cCg | 51 | 51 | 1 | 6347-6349 |
ORF1ab/nsp3 | 1210 | L1210M | L2028M | nonsyn | Ctg | Atg | 32 | 32 | 1 | 6347-6349 |
ORF1ab/nsp3 | 1210 | L1210Q | L2028Q | nonsyn | cTg | cAg | 32 | 25 | 0.78125 | 6347-6349 |
ORF1ab/nsp3 | 1210 | L1210Q | L2028Q | nonsyn | cTG | cAA | 32 | 7 | 0.21875 | 6347-6349 |
ORF1ab/nsp3 | 1210 | L1210R | L2028R | nonsyn | cTg | cGg | 6 | 6 | 1 | 6347-6349 |
ORF1ab/nsp3 | 1210 | L1210F | L2028F | nonsyn | CtG | TtT | 6 | 5 | 0.833333 | 6347-6349 |
ORF1ab/nsp3 | 1210 | L1210X | L2028X | nonsyn | CTg | TAg | 6 | 4 | 0.666667 | 6347-6349 |
ORF1ab/nsp3 | 1210 | L1210X | L2028X | nonsyn | CTG | TAA | 6 | 2 | 0.333333 | 6347-6349 |
ORF1ab/nsp3 | 1210 | L1210F | L2028F | nonsyn | CtG | TtC | 6 | 1 | 0.166667 | 6347-6349 |
ORF1ab/nsp3 | 1210 | L1210Y | L2028Y | nonsyn | CTG | TAT | 5 | 4 | 0.8 | 6347-6349 |
ORF1ab/nsp3 | 1210 | L1210H | L2028H | nonsyn | cTG | cAT | 5 | 4 | 0.8 | 6347-6349 |
ORF1ab/nsp3 | 1210 | L1210Y | L2028Y | nonsyn | CTG | TAC | 5 | 1 | 0.2 | 6347-6349 |
ORF1ab/nsp3 | 1210 | L1210H | L2028H | nonsyn | cTG | cAC | 5 | 1 | 0.2 | 6347-6349 |
ORF1ab/nsp3 | 1210 | L1210V | L2028V | nonsyn | Ctg | Gtg | 4 | 4 | 1 | 6347-6349 |
ORF1ab/nsp3 | 1210 | L1210I | L2028I | nonsyn | CtG | AtT | 4 | 2 | 0.5 | 6347-6349 |
ORF1ab/nsp3 | 1210 | L1210I | L2028I | nonsyn | CtG | AtC | 4 | 2 | 0.5 | 6347-6349 |
ORF1ab/nsp3 | 1210 | L1210N | L2028N | nonsyn | CTG | AAT | 3 | 2 | 0.666667 | 6347-6349 |
ORF1ab/nsp3 | 1210 | L1210N | L2028N | nonsyn | CTG | AAC | 3 | 1 | 0.333333 | 6347-6349 |
ORF1ab/nsp3 | 1210 | L1210K | L2028K | nonsyn | CTg | AAg | 2 | 2 | 1 | 6347-6349 |
ORF1ab/nsp3 | 1210 | L1210T | L2028T | nonsyn | CTG | ACC | 1 | 1 | 1 | 6347-6349 |
ORF1ab/nsp3 | 1210 | L1210del1 | L2028del1 | del | ctG | ct- | 1 | 1 | 1 | 6347-6349 |
Details of the mutation no within lineages (LineageCodonProp is the proportion the codon is observed at, at this particular site, on each lineage):
ORF | CodonNum | Mut | RefCodon | MutCodon | CodonCount | AACount | Lineage | LineageCodonProp |
ORF1ab/nsp3 | 1210 | L1210L | Ctg | Ttg | 4134 | 7721 | All | 0.000791 |
ORF1ab/nsp3 | 1210 | L1210L | ctG | ctT | 3005 | 7721 | All | 0.000575 |
ORF1ab/nsp3 | 1210 | L1210L | ctG | ctA | 526 | 7721 | All | 0.000101 |
ORF1ab/nsp3 | 1210 | L1210L | ctG | ctC | 52 | 7721 | All | 0.00001 |
ORF1ab/nsp3 | 1210 | L1210L | CtG | TtA | 4 | 7721 | All | 0.000001 |
ORF1ab/nsp3 | 1210 | L1210L | Ctg | Ttg | 1951 | 1951 | AY.4.4 | 0.798282 |
ORF1ab/nsp3 | 1210 | L1210L | ctG | ctT | 1695 | 1852 | AY.4 | 0.002638 |
ORF1ab/nsp3 | 1210 | L1210L | Ctg | Ttg | 126 | 1852 | AY.4 | 0.000196 |
ORF1ab/nsp3 | 1210 | L1210L | ctG | ctC | 16 | 1852 | AY.4 | 0.000025 |
ORF1ab/nsp3 | 1210 | L1210L | ctG | ctA | 15 | 1852 | AY.4 | 0.000023 |
ORF1ab/nsp3 | 1210 | L1210L | Ctg | Ttg | 257 | 480 | B.1.1.7 | 0.00023 |
ORF1ab/nsp3 | 1210 | L1210L | ctG | ctT | 133 | 480 | B.1.1.7 | 0.000119 |
ORF1ab/nsp3 | 1210 | L1210L | ctG | ctA | 86 | 480 | B.1.1.7 | 0.000077 |
ORF1ab/nsp3 | 1210 | L1210L | ctG | ctC | 4 | 480 | B.1.1.7 | 0.000004 |
ORF1ab/nsp3 | 1210 | L1210L | ctG | ctT | 325 | 472 | B.1.2 | 0.002862 |
ORF1ab/nsp3 | 1210 | L1210L | Ctg | Ttg | 133 | 472 | B.1.2 | 0.001171 |
ORF1ab/nsp3 | 1210 | L1210L | ctG | ctC | 12 | 472 | B.1.2 | 0.000106 |
ORF1ab/nsp3 | 1210 | L1210L | ctG | ctA | 2 | 472 | B.1.2 | 0.000018 |
ORF1ab/nsp3 | 1210 | L1210L | Ctg | Ttg | 336 | 345 | AY.20 | 0.013059 |
ORF1ab/nsp3 | 1210 | L1210L | ctG | ctT | 8 | 345 | AY.20 | 0.000311 |
ORF1ab/nsp3 | 1210 | L1210L | ctG | ctC | 1 | 345 | AY.20 | 0.000039 |
ORF1ab/nsp3 | 1210 | L1210L | ctG | ctT | 90 | 207 | B.1.617.2 | 0.000339 |
ORF1ab/nsp3 | 1210 | L1210L | Ctg | Ttg | 69 | 207 | B.1.617.2 | 0.00026 |
ORF1ab/nsp3 | 1210 | L1210L | ctG | ctA | 47 | 207 | B.1.617.2 | 0.000177 |
ORF1ab/nsp3 | 1210 | L1210L | ctG | ctC | 1 | 207 | B.1.617.2 | 0.000004 |
ORF1ab/nsp3 | 1210 | L1210L | Ctg | Ttg | 197 | 197 | P.2 | 0.036767 |
ORF1ab/nsp3 | 1210 | L1210L | ctG | ctA | 122 | 191 | AY.25 | 0.000734 |
ORF1ab/nsp3 | 1210 | L1210L | Ctg | Ttg | 52 | 191 | AY.25 | 0.000313 |
ORF1ab/nsp3 | 1210 | L1210L | ctG | ctT | 14 | 191 | AY.25 | 0.000084 |
ORF1ab/nsp3 | 1210 | L1210L | CtG | TtA | 2 | 191 | AY.25 | 0.000012 |
ORF1ab/nsp3 | 1210 | L1210L | ctG | ctC | 1 | 191 | AY.25 | 0.000006 |
ORF1ab/nsp3 | 1210 | L1210L | Ctg | Ttg | 171 | 171 | B.1.1.204 | 0.519757 |
ORF1ab/nsp3 | 1210 | L1210del | CTG | --- | 107 | 107 | All | 0.00002 |
ORF1ab/nsp3 | 1210 | L1210L | ctG | ctT | 56 | 100 | AY.43 | 0.000248 |
ORF1ab/nsp3 | 1210 | L1210L | Ctg | Ttg | 30 | 100 | AY.43 | 0.000133 |
ORF1ab/nsp3 | 1210 | L1210L | ctG | ctA | 14 | 100 | AY.43 | 0.000062 |
ORF1ab/nsp3 | 1210 | L1210L | Ctg | Ttg | 78 | 88 | AY.47 | 0.002426 |
ORF1ab/nsp3 | 1210 | L1210L | ctG | ctT | 8 | 88 | AY.47 | 0.000249 |
ORF1ab/nsp3 | 1210 | L1210L | ctG | ctA | 2 | 88 | AY.47 | 0.000062 |
ORF1ab/nsp3 | 1210 | L1210L | Ctg | Ttg | 48 | 82 | B.1.429 | 0.001129 |
ORF1ab/nsp3 | 1210 | L1210L | ctG | ctT | 32 | 82 | B.1.429 | 0.000753 |
ORF1ab/nsp3 | 1210 | L1210L | ctG | ctA | 2 | 82 | B.1.429 | 0.000047 |
ORF1ab/nsp3 | 1210 | L1210L | Ctg | Ttg | 76 | 76 | B.1.177.60 | 0.016601 |
ORF1ab/nsp3 | 1210 | L1210L | ctG | ctA | 33 | 75 | B.1.177 | 0.000435 |
ORF1ab/nsp3 | 1210 | L1210L | Ctg | Ttg | 32 | 75 | B.1.177 | 0.000421 |
ORF1ab/nsp3 | 1210 | L1210L | ctG | ctT | 10 | 75 | B.1.177 | 0.000132 |
ORF1ab/nsp3 | 1210 | L1210L | ctG | ctT | 40 | 73 | AY.103 | 0.000248 |
ORF1ab/nsp3 | 1210 | L1210L | Ctg | Ttg | 29 | 73 | AY.103 | 0.00018 |
ORF1ab/nsp3 | 1210 | L1210L | ctG | ctC | 2 | 73 | AY.103 | 0.000012 |
ORF1ab/nsp3 | 1210 | L1210L | ctG | ctA | 2 | 73 | AY.103 | 0.000012 |
ORF1ab/nsp3 | 1210 | L1210L | Ctg | Ttg | 56 | 57 | AY.46.5 | 0.011111 |
ORF1ab/nsp3 | 1210 | L1210L | ctG | ctA | 1 | 57 | AY.46.5 | 0.000198 |
ORF1ab/nsp3 | 1210 | L1210P | cTg | cCg | 51 | 51 | All | 0.00001 |
ORF1ab/nsp3 | 1210 | L1210L | ctG | ctT | 27 | 51 | AY.3 | 0.000269 |
ORF1ab/nsp3 | 1210 | L1210L | Ctg | Ttg | 12 | 51 | AY.3 | 0.000119 |
ORF1ab/nsp3 | 1210 | L1210L | ctG | ctA | 9 | 51 | AY.3 | 0.00009 |
ORF1ab/nsp3 | 1210 | L1210L | ctG | ctC | 2 | 51 | AY.3 | 0.00002 |
ORF1ab/nsp3 | 1210 | L1210L | CtG | TtA | 1 | 51 | AY.3 | 0.00001 |
ORF1ab/nsp3 | 1210 | L1210L | ctG | ctA | 46 | 47 | AY.61 | 0.00482 |
ORF1ab/nsp3 | 1210 | L1210L | ctG | ctT | 1 | 47 | AY.61 | 0.000105 |
ORF1ab/nsp3 | 1210 | L1210L | ctG | ctT | 25 | 47 | B.1 | 0.000229 |
ORF1ab/nsp3 | 1210 | L1210L | Ctg | Ttg | 21 | 47 | B.1 | 0.000192 |
ORF1ab/nsp3 | 1210 | L1210L | ctG | ctC | 1 | 47 | B.1 | 0.000009 |
ORF1ab/nsp3 | 1210 | L1210L | Ctg | Ttg | 28 | 45 | P.1 | 0.000441 |
ORF1ab/nsp3 | 1210 | L1210L | ctG | ctT | 17 | 45 | P.1 | 0.000268 |
ORF1ab/nsp3 | 1210 | L1210L | Ctg | Ttg | 35 | 44 | AY.44 | 0.000213 |
ORF1ab/nsp3 | 1210 | L1210L | ctG | ctT | 6 | 44 | AY.44 | 0.000037 |
ORF1ab/nsp3 | 1210 | L1210L | ctG | ctA | 3 | 44 | AY.44 | 0.000018 |
ORF1ab/nsp3 | 1210 | L1210L | ctG | ctT | 42 | 42 | AY.107 | 0.019571 |
ORF1ab/nsp3 | 1210 | L1210L | ctG | ctT | 36 | 41 | B.1.351 | 0.00107 |
ORF1ab/nsp3 | 1210 | L1210L | Ctg | Ttg | 5 | 41 | B.1.351 | 0.000149 |
ORF1ab/nsp3 | 1210 | L1210L | ctG | ctT | 38 | 39 | B.1.147 | 0.028723 |
ORF1ab/nsp3 | 1210 | L1210L | Ctg | Ttg | 1 | 39 | B.1.147 | 0.000756 |
ORF1ab/nsp3 | 1210 | L1210L | Ctg | Ttg | 20 | 34 | B.1.1 | 0.000363 |
ORF1ab/nsp3 | 1210 | L1210L | ctG | ctT | 10 | 34 | B.1.1 | 0.000181 |
ORF1ab/nsp3 | 1210 | L1210L | ctG | ctA | 4 | 34 | B.1.1 | 0.000073 |
ORF1ab/nsp3 | 1210 | L1210M | Ctg | Atg | 32 | 32 | All | 0.000006 |
ORF1ab/nsp3 | 1210 | L1210Q | cTg | cAg | 25 | 32 | All | 0.000005 |
ORF1ab/nsp3 | 1210 | L1210Q | cTG | cAA | 7 | 32 | All | 0.000001 |
ORF1ab/nsp3 | 1210 | L1210L | Ctg | Ttg | 18 | 31 | B.1.526 | 0.000423 |
ORF1ab/nsp3 | 1210 | L1210L | ctG | ctA | 8 | 31 | B.1.526 | 0.000188 |
ORF1ab/nsp3 | 1210 | L1210L | ctG | ctT | 5 | 31 | B.1.526 | 0.000118 |
ORF1ab/nsp3 | 1210 | L1210L | ctG | ctA | 28 | 28 | B.1.177.17 | 0.022989 |
ORF1ab/nsp3 | 1210 | L1210L | ctG | ctT | 24 | 24 | AY.7 | 0.004704 |
ORF1ab/nsp3 | 1210 | L1210L | ctG | ctT | 17 | 23 | AY.39 | 0.00042 |
ORF1ab/nsp3 | 1210 | L1210L | Ctg | Ttg | 4 | 23 | AY.39 | 0.000099 |
ORF1ab/nsp3 | 1210 | L1210L | ctG | ctA | 2 | 23 | AY.39 | 0.000049 |
ORF1ab/nsp3 | 1210 | L1210L | ctG | ctT | 19 | 22 | B.1.1.214 | 0.001054 |
ORF1ab/nsp3 | 1210 | L1210L | Ctg | Ttg | 3 | 22 | B.1.1.214 | 0.000166 |
ORF1ab/nsp3 | 1210 | L1210L | ctG | ctT | 15 | 22 | B.1.1.519 | 0.000596 |
ORF1ab/nsp3 | 1210 | L1210L | Ctg | Ttg | 6 | 22 | B.1.1.519 | 0.000238 |
ORF1ab/nsp3 | 1210 | L1210L | ctG | ctA | 1 | 22 | B.1.1.519 | 0.00004 |
ORF1ab/nsp3 | 1210 | L1210L | Ctg | Ttg | 16 | 21 | AY.34 | 0.001551 |
ORF1ab/nsp3 | 1210 | L1210L | ctG | ctT | 5 | 21 | AY.34 | 0.000485 |
ORF1ab/nsp3 | 1210 | L1210L | ctG | ctT | 16 | 21 | B.1.160 | 0.000499 |
ORF1ab/nsp3 | 1210 | L1210L | Ctg | Ttg | 3 | 21 | B.1.160 | 0.000094 |
ORF1ab/nsp3 | 1210 | L1210L | ctG | ctA | 2 | 21 | B.1.160 | 0.000062 |
ORF1ab/nsp3 | 1210 | L1210L | ctG | ctT | 12 | 20 | AY.102 | 0.000318 |
ORF1ab/nsp3 | 1210 | L1210L | Ctg | Ttg | 8 | 20 | AY.102 | 0.000212 |
ORF1ab/nsp3 | 1210 | L1210L | ctG | ctT | 18 | 20 | AY.19 | 0.020525 |
ORF1ab/nsp3 | 1210 | L1210L | Ctg | Ttg | 2 | 20 | AY.19 | 0.002281 |
ORF1ab/nsp3 | 1210 | L1210L | Ctg | Ttg | 18 | 19 | B.1.1.70 | 0.006139 |
ORF1ab/nsp3 | 1210 | L1210L | ctG | ctA | 1 | 19 | B.1.1.70 | 0.000341 |
ORF1ab/nsp3 | 1210 | L1210L | ctG | ctT | 19 | 19 | B.1.561 | 0.007543 |
ORF1ab/nsp3 | 1210 | L1210L | Ctg | Ttg | 9 | 18 | AY.5 | 0.000186 |
ORF1ab/nsp3 | 1210 | L1210L | ctG | ctT | 8 | 18 | AY.5 | 0.000165 |
ORF1ab/nsp3 | 1210 | L1210L | ctG | ctA | 1 | 18 | AY.5 | 0.000021 |
ORF1ab/nsp3 | 1210 | L1210L | Ctg | Ttg | 12 | 17 | B.1.36 | 0.001751 |
ORF1ab/nsp3 | 1210 | L1210L | ctG | ctT | 5 | 17 | B.1.36 | 0.00073 |
ORF1ab/nsp3 | 1210 | L1210L | ctG | ctT | 15 | 16 | AY.100 | 0.00069 |
ORF1ab/nsp3 | 1210 | L1210L | Ctg | Ttg | 1 | 16 | AY.100 | 0.000046 |
ORF1ab/nsp3 | 1210 | L1210L | Ctg | Ttg | 5 | 16 | AY.4.2 | 0.000108 |
ORF1ab/nsp3 | 1210 | L1210L | ctG | ctA | 5 | 16 | AY.4.2 | 0.000108 |
ORF1ab/nsp3 | 1210 | L1210L | ctG | ctC | 3 | 16 | AY.4.2 | 0.000065 |
ORF1ab/nsp3 | 1210 | L1210L | ctG | ctT | 3 | 16 | AY.4.2 | 0.000065 |
ORF1ab/nsp3 | 1210 | L1210L | ctG | ctT | 14 | 16 | AY.7.1 | 0.001578 |
ORF1ab/nsp3 | 1210 | L1210L | Ctg | Ttg | 2 | 16 | AY.7.1 | 0.000225 |
ORF1ab/nsp3 | 1210 | L1210del | CTG | --- | 16 | 16 | B.1.617.2 | 0.00006 |
ORF1ab/nsp3 | 1210 | L1210L | Ctg | Ttg | 11 | 16 | C.37 | 0.001277 |
ORF1ab/nsp3 | 1210 | L1210L | ctG | ctT | 5 | 16 | C.37 | 0.00058 |
ORF1ab/nsp3 | 1210 | L1210L | ctG | ctA | 15 | 15 | AU.2 | 0.03632 |
ORF1ab/nsp3 | 1210 | L1210L | Ctg | Ttg | 7 | 15 | AY.29 | 0.00011 |
ORF1ab/nsp3 | 1210 | L1210L | ctG | ctT | 7 | 15 | AY.29 | 0.00011 |
ORF1ab/nsp3 | 1210 | L1210L | ctG | ctA | 1 | 15 | AY.29 | 0.000016 |
ORF1ab/nsp3 | 1210 | L1210L | Ctg | Ttg | 6 | 15 | AY.33 | 0.000401 |
ORF1ab/nsp3 | 1210 | L1210L | ctG | ctT | 6 | 15 | AY.33 | 0.000401 |
ORF1ab/nsp3 | 1210 | L1210L | ctG | ctA | 3 | 15 | AY.33 | 0.0002 |
ORF1ab/nsp3 | 1210 | L1210L | Ctg | Ttg | 14 | 14 | AY.55 | 0.012844 |
ORF1ab/nsp3 | 1210 | L1210L | ctG | ctA | 14 | 14 | B.1.1.170 | 0.017456 |
ORF1ab/nsp3 | 1210 | L1210del | CTG | --- | 14 | 14 | B.1.1.7 | 0.000013 |
ORF1ab/nsp3 | 1210 | L1210del | CTG | --- | 13 | 13 | AY.100 | 0.000598 |
ORF1ab/nsp3 | 1210 | L1210L | Ctg | Ttg | 6 | 13 | AY.26 | 0.00017 |
ORF1ab/nsp3 | 1210 | L1210L | ctG | ctT | 6 | 13 | AY.26 | 0.00017 |
ORF1ab/nsp3 | 1210 | L1210L | ctG | ctA | 1 | 13 | AY.26 | 0.000028 |
ORF1ab/nsp3 | 1210 | L1210L | Ctg | Ttg | 9 | 12 | Q.8 | 0.001484 |
ORF1ab/nsp3 | 1210 | L1210L | ctG | ctA | 2 | 12 | Q.8 | 0.00033 |
ORF1ab/nsp3 | 1210 | L1210L | ctG | ctT | 1 | 12 | Q.8 | 0.000165 |
ORF1ab/nsp3 | 1210 | L1210L | ctG | ctT | 9 | 11 | AY.42 | 0.000362 |
ORF1ab/nsp3 | 1210 | L1210L | Ctg | Ttg | 2 | 11 | AY.42 | 0.00008 |
ORF1ab/nsp3 | 1210 | L1210L | ctG | ctT | 8 | 11 | AY.74 | 0.000925 |
ORF1ab/nsp3 | 1210 | L1210L | Ctg | Ttg | 3 | 11 | AY.74 | 0.000347 |
ORF1ab/nsp3 | 1210 | L1210del | CTG | --- | 11 | 11 | B.1.160.14 | 0.023305 |
ORF1ab/nsp3 | 1210 | L1210del | CTG | --- | 11 | 11 | B.1.177.3 | 0.083969 |
ORF1ab/nsp3 | 1210 | L1210L | ctG | ctA | 6 | 10 | AY.99.2 | 0.000553 |
ORF1ab/nsp3 | 1210 | L1210L | ctG | ctT | 4 | 10 | AY.99.2 | 0.000369 |
ORF1ab/nsp3 | 1210 | L1210L | Ctg | Ttg | 8 | 10 | B.1.1.1 | 0.002614 |
ORF1ab/nsp3 | 1210 | L1210L | ctG | ctT | 2 | 10 | B.1.1.1 | 0.000653 |
ORF1ab/nsp3 | 1210 | L1210L | Ctg | Ttg | 9 | 10 | B.1.1.317 | 0.003705 |
ORF1ab/nsp3 | 1210 | L1210L | ctG | ctT | 1 | 10 | B.1.1.317 | 0.000412 |
ORF1ab/nsp3 | 1210 | L1210L | Ctg | Ttg | 8 | 10 | P.1.17 | 0.001294 |
ORF1ab/nsp3 | 1210 | L1210L | ctG | ctT | 2 | 10 | P.1.17 | 0.000324 |
ORF1ab/nsp3 | 1210 | L1210L | Ctg | Ttg | 8 | 9 | AY.75 | 0.000448 |
ORF1ab/nsp3 | 1210 | L1210L | ctG | ctA | 1 | 9 | AY.75 | 0.000056 |
ORF1ab/nsp3 | 1210 | L1210L | Ctg | Ttg | 5 | 9 | B.1.621 | 0.000443 |
ORF1ab/nsp3 | 1210 | L1210L | ctG | ctA | 2 | 9 | B.1.621 | 0.000177 |
ORF1ab/nsp3 | 1210 | L1210L | ctG | ctC | 1 | 9 | B.1.621 | 0.000089 |
ORF1ab/nsp3 | 1210 | L1210L | ctG | ctT | 1 | 9 | B.1.621 | 0.000089 |
ORF1ab/nsp3 | 1210 | L1210Q | cTg | cAg | 8 | 8 | AY.44 | 0.000049 |
ORF1ab/nsp3 | 1210 | L1210L | ctG | ctA | 7 | 8 | AY.67 | 0.00325 |
ORF1ab/nsp3 | 1210 | L1210L | Ctg | Ttg | 1 | 8 | AY.67 | 0.000464 |
ORF1ab/nsp3 | 1210 | L1210L | ctG | ctT | 5 | 8 | AY.9 | 0.000338 |
ORF1ab/nsp3 | 1210 | L1210L | Ctg | Ttg | 3 | 8 | AY.9 | 0.000203 |
ORF1ab/nsp3 | 1210 | L1210Q | cTg | cAg | 7 | 8 | B.1.1.7 | 0.000006 |
ORF1ab/nsp3 | 1210 | L1210Q | cTG | cAA | 1 | 8 | B.1.1.7 | 0.000001 |
ORF1ab/nsp3 | 1210 | L1210L | ctG | ctT | 6 | 8 | B.1.243 | 0.000418 |
ORF1ab/nsp3 | 1210 | L1210L | Ctg | Ttg | 1 | 8 | B.1.243 | 0.00007 |
ORF1ab/nsp3 | 1210 | L1210L | ctG | ctA | 1 | 8 | B.1.243 | 0.00007 |
ORF1ab/nsp3 | 1210 | L1210L | ctG | ctT | 8 | 8 | B.1.36.38 | 0.013136 |
ORF1ab/nsp3 | 1210 | L1210P | cTg | cCg | 8 | 8 | B.1.429 | 0.000188 |
ORF1ab/nsp3 | 1210 | L1210L | Ctg | Ttg | 4 | 7 | AY.120 | 0.000149 |
ORF1ab/nsp3 | 1210 | L1210L | ctG | ctT | 2 | 7 | AY.120 | 0.000074 |
ORF1ab/nsp3 | 1210 | L1210L | ctG | ctC | 1 | 7 | AY.120 | 0.000037 |
ORF1ab/nsp3 | 1210 | L1210L | ctG | ctT | 4 | 7 | AY.121 | 0.000541 |
ORF1ab/nsp3 | 1210 | L1210L | Ctg | Ttg | 3 | 7 | AY.121 | 0.000406 |
ORF1ab/nsp3 | 1210 | L1210M | Ctg | Atg | 7 | 7 | B.1.1.7 | 0.000006 |
ORF1ab/nsp3 | 1210 | L1210P | cTg | cCg | 7 | 7 | B.1.1.7 | 0.000006 |
ORF1ab/nsp3 | 1210 | L1210L | ctG | ctT | 6 | 7 | B.1.234 | 0.000792 |
ORF1ab/nsp3 | 1210 | L1210L | Ctg | Ttg | 1 | 7 | B.1.234 | 0.000132 |
ORF1ab/nsp3 | 1210 | L1210L | ctG | ctT | 7 | 7 | B.1.628 | 0.002467 |
ORF1ab/nsp3 | 1210 | L1210R | cTg | cGg | 6 | 6 | All | 0.000001 |
ORF1ab/nsp3 | 1210 | L1210F | CtG | TtT | 5 | 6 | All | 0.000001 |
ORF1ab/nsp3 | 1210 | L1210X | CTg | TAg | 4 | 6 | All | 0.000001 |
ORF1ab/nsp3 | 1210 | L1210X | CTG | TAA | 2 | 6 | All | 0 |
ORF1ab/nsp3 | 1210 | L1210F | CtG | TtC | 1 | 6 | All | 0 |
ORF1ab/nsp3 | 1210 | L1210M | Ctg | Atg | 6 | 6 | AY.25 | 0.000036 |
ORF1ab/nsp3 | 1210 | L1210F | CtG | TtT | 5 | 6 | AY.25 | 0.00003 |
ORF1ab/nsp3 | 1210 | L1210X | CTg | TAg | 4 | 6 | AY.25 | 0.000024 |
ORF1ab/nsp3 | 1210 | L1210Q | cTg | cAg | 4 | 6 | AY.25 | 0.000024 |
ORF1ab/nsp3 | 1210 | L1210Q | cTG | cAA | 2 | 6 | AY.25 | 0.000012 |
ORF1ab/nsp3 | 1210 | L1210X | CTG | TAA | 2 | 6 | AY.25 | 0.000012 |
ORF1ab/nsp3 | 1210 | L1210F | CtG | TtC | 1 | 6 | AY.25 | 0.000006 |
ORF1ab/nsp3 | 1210 | L1210L | ctG | ctT | 3 | 6 | AY.45 | 0.000365 |
ORF1ab/nsp3 | 1210 | L1210L | Ctg | Ttg | 3 | 6 | AY.45 | 0.000365 |
ORF1ab/nsp3 | 1210 | L1210L | Ctg | Ttg | 6 | 6 | AY.71 | 0.00285 |
ORF1ab/nsp3 | 1210 | L1210L | ctG | ctA | 6 | 6 | B.1.1.371 | 0.0625 |
ORF1ab/nsp3 | 1210 | L1210L | ctG | ctA | 3 | 6 | B.1.596 | 0.000261 |
ORF1ab/nsp3 | 1210 | L1210L | Ctg | Ttg | 2 | 6 | B.1.596 | 0.000174 |
ORF1ab/nsp3 | 1210 | L1210L | ctG | ctT | 1 | 6 | B.1.596 | 0.000087 |
ORF1ab/nsp3 | 1210 | L1210L | Ctg | Ttg | 4 | 6 | D.2 | 0.0003 |
ORF1ab/nsp3 | 1210 | L1210L | ctG | ctT | 2 | 6 | D.2 | 0.00015 |
ORF1ab/nsp3 | 1210 | L1210L | Ctg | Ttg | 5 | 6 | P.1.12 | 0.00242 |
ORF1ab/nsp3 | 1210 | L1210L | ctG | ctT | 1 | 6 | P.1.12 | 0.000484 |
ORF1ab/nsp3 | 1210 | L1210L | ctG | ctT | 4 | 6 | P.1.7 | 0.001277 |
ORF1ab/nsp3 | 1210 | L1210L | Ctg | Ttg | 2 | 6 | P.1.7 | 0.000639 |
ORF1ab/nsp3 | 1210 | L1210H | cTG | cAT | 4 | 5 | All | 0.000001 |
ORF1ab/nsp3 | 1210 | L1210Y | CTG | TAT | 4 | 5 | All | 0.000001 |
ORF1ab/nsp3 | 1210 | L1210Y | CTG | TAC | 1 | 5 | All | 0 |
ORF1ab/nsp3 | 1210 | L1210H | cTG | cAC | 1 | 5 | All | 0 |
ORF1ab/nsp3 | 1210 | L1210L | Ctg | Ttg | 5 | 5 | AY.16 | 0.001898 |
ORF1ab/nsp3 | 1210 | L1210Y | CTG | TAT | 4 | 5 | AY.25 | 0.000024 |
ORF1ab/nsp3 | 1210 | L1210H | cTG | cAT | 4 | 5 | AY.25 | 0.000024 |
ORF1ab/nsp3 | 1210 | L1210H | cTG | cAC | 1 | 5 | AY.25 | 0.000006 |
ORF1ab/nsp3 | 1210 | L1210Y | CTG | TAC | 1 | 5 | AY.25 | 0.000006 |
ORF1ab/nsp3 | 1210 | L1210L | ctG | ctT | 4 | 5 | AY.3.1 | 0.000341 |
ORF1ab/nsp3 | 1210 | L1210L | Ctg | Ttg | 1 | 5 | AY.3.1 | 0.000085 |
ORF1ab/nsp3 | 1210 | L1210P | cTg | cCg | 5 | 5 | AY.4 | 0.000008 |
ORF1ab/nsp3 | 1210 | L1210L | Ctg | Ttg | 4 | 5 | AY.98 | 0.000316 |
ORF1ab/nsp3 | 1210 | L1210L | ctG | ctT | 1 | 5 | AY.98 | 0.000079 |
ORF1ab/nsp3 | 1210 | L1210L | ctG | ctT | 4 | 5 | AY.98.1 | 0.000194 |
ORF1ab/nsp3 | 1210 | L1210L | Ctg | Ttg | 1 | 5 | AY.98.1 | 0.000048 |
ORF1ab/nsp3 | 1210 | L1210L | Ctg | Ttg | 5 | 5 | B.1.1.318 | 0.001509 |
ORF1ab/nsp3 | 1210 | L1210L | ctG | ctT | 5 | 5 | B.1.240 | 0.001078 |
ORF1ab/nsp3 | 1210 | L1210L | Ctg | Ttg | 3 | 5 | B.1.575 | 0.00091 |
ORF1ab/nsp3 | 1210 | L1210L | ctG | ctA | 1 | 5 | B.1.575 | 0.000303 |
ORF1ab/nsp3 | 1210 | L1210L | ctG | ctT | 1 | 5 | B.1.575 | 0.000303 |
ORF1ab/nsp3 | 1210 | L1210L | Ctg | Ttg | 3 | 5 | P.1.14 | 0.000143 |
ORF1ab/nsp3 | 1210 | L1210L | ctG | ctC | 1 | 5 | P.1.14 | 0.000048 |
ORF1ab/nsp3 | 1210 | L1210L | ctG | ctT | 1 | 5 | P.1.14 | 0.000048 |
ORF1ab/nsp3 | 1210 | L1210V | Ctg | Gtg | 4 | 4 | All | 0.000001 |
ORF1ab/nsp3 | 1210 | L1210I | CtG | AtT | 2 | 4 | All | 0 |
ORF1ab/nsp3 | 1210 | L1210I | CtG | AtC | 2 | 4 | All | 0 |
ORF1ab/nsp3 | 1210 | L1210L | Ctg | Ttg | 2 | 4 | AY.119 | 0.000071 |
ORF1ab/nsp3 | 1210 | L1210L | ctG | ctT | 2 | 4 | AY.119 | 0.000071 |
ORF1ab/nsp3 | 1210 | L1210M | Ctg | Atg | 4 | 4 | AY.3 | 0.00004 |
ORF1ab/nsp3 | 1210 | L1210L | ctG | ctT | 4 | 4 | AY.32 | 0.00213 |
ORF1ab/nsp3 | 1210 | L1210L | ctG | ctT | 4 | 4 | AY.36 | 0.000593 |
ORF1ab/nsp3 | 1210 | L1210L | ctG | ctT | 4 | 4 | AY.39.1.1 | 0.002899 |
ORF1ab/nsp3 | 1210 | L1210L | ctG | ctA | 2 | 4 | AY.62 | 0.000871 |
ORF1ab/nsp3 | 1210 | L1210L | Ctg | Ttg | 2 | 4 | AY.62 | 0.000871 |
ORF1ab/nsp3 | 1210 | L1210L | ctG | ctA | 2 | 4 | AY.75.1 | 0.000361 |
ORF1ab/nsp3 | 1210 | L1210L | Ctg | Ttg | 1 | 4 | AY.75.1 | 0.00018 |
ORF1ab/nsp3 | 1210 | L1210L | ctG | ctT | 1 | 4 | AY.75.1 | 0.00018 |
ORF1ab/nsp3 | 1210 | L1210L | ctG | ctA | 2 | 4 | B | 0.000256 |
ORF1ab/nsp3 | 1210 | L1210L | ctG | ctC | 1 | 4 | B | 0.000128 |
ORF1ab/nsp3 | 1210 | L1210L | ctG | ctT | 1 | 4 | B | 0.000128 |
ORF1ab/nsp3 | 1210 | L1210L | ctG | ctT | 4 | 4 | B.1.1.277 | 0.003035 |
ORF1ab/nsp3 | 1210 | L1210P | cTg | cCg | 4 | 4 | B.1.160 | 0.000125 |
ORF1ab/nsp3 | 1210 | L1210L | ctG | ctT | 2 | 4 | B.1.221 | 0.000142 |
ORF1ab/nsp3 | 1210 | L1210L | Ctg | Ttg | 1 | 4 | B.1.221 | 0.000071 |
ORF1ab/nsp3 | 1210 | L1210L | ctG | ctA | 1 | 4 | B.1.221 | 0.000071 |
ORF1ab/nsp3 | 1210 | L1210del | CTG | --- | 4 | 4 | B.1.234 | 0.000528 |
ORF1ab/nsp3 | 1210 | L1210L | ctG | ctT | 3 | 4 | B.1.36.8 | 0.003 |
ORF1ab/nsp3 | 1210 | L1210L | Ctg | Ttg | 1 | 4 | B.1.36.8 | 0.001 |
ORF1ab/nsp3 | 1210 | L1210L | ctG | ctT | 2 | 4 | B.1.427 | 0.000101 |
ORF1ab/nsp3 | 1210 | L1210L | ctG | ctA | 1 | 4 | B.1.427 | 0.00005 |
ORF1ab/nsp3 | 1210 | L1210L | Ctg | Ttg | 1 | 4 | B.1.427 | 0.00005 |
ORF1ab/nsp3 | 1210 | L1210L | Ctg | Ttg | 4 | 4 | B.1.466.2 | 0.001565 |
ORF1ab/nsp3 | 1210 | L1210L | ctG | ctT | 4 | 4 | B.1.599 | 0.014599 |
ORF1ab/nsp3 | 1210 | L1210L | Ctg | Ttg | 4 | 4 | B.1.93 | 0.003735 |
ORF1ab/nsp3 | 1210 | L1210del | CTG | --- | 4 | 4 | P.1 | 0.000063 |
ORF1ab/nsp3 | 1210 | L1210N | CTG | AAT | 2 | 3 | All | 0 |
ORF1ab/nsp3 | 1210 | L1210N | CTG | AAC | 1 | 3 | All | 0 |
ORF1ab/nsp3 | 1210 | L1210L | Ctg | Ttg | 3 | 3 | AY.118 | 0.000188 |
ORF1ab/nsp3 | 1210 | L1210del | CTG | --- | 3 | 3 | AY.25 | 0.000018 |
ORF1ab/nsp3 | 1210 | L1210I | CtG | AtT | 2 | 3 | AY.25 | 0.000012 |
ORF1ab/nsp3 | 1210 | L1210N | CTG | AAT | 2 | 3 | AY.25 | 0.000012 |
ORF1ab/nsp3 | 1210 | L1210I | CtG | AtC | 1 | 3 | AY.25 | 0.000006 |
ORF1ab/nsp3 | 1210 | L1210N | CTG | AAC | 1 | 3 | AY.25 | 0.000006 |
ORF1ab/nsp3 | 1210 | L1210del | CTG | --- | 3 | 3 | AY.4 | 0.000005 |
ORF1ab/nsp3 | 1210 | L1210P | cTg | cCg | 3 | 3 | AY.44 | 0.000018 |
ORF1ab/nsp3 | 1210 | L1210L | ctG | ctT | 2 | 3 | AY.46 | 0.000208 |
ORF1ab/nsp3 | 1210 | L1210L | Ctg | Ttg | 1 | 3 | AY.46 | 0.000104 |
ORF1ab/nsp3 | 1210 | L1210L | Ctg | Ttg | 2 | 3 | AY.9.2 | 0.000073 |
ORF1ab/nsp3 | 1210 | L1210L | ctG | ctT | 1 | 3 | AY.9.2 | 0.000037 |
ORF1ab/nsp3 | 1210 | L1210del | CTG | --- | 3 | 3 | B.1.177 | 0.00004 |
ORF1ab/nsp3 | 1210 | L1210L | Ctg | Ttg | 3 | 3 | B.1.177.53 | 0.007177 |
ORF1ab/nsp3 | 1210 | L1210L | Ctg | Ttg | 3 | 3 | B.1.258 | 0.0002 |
ORF1ab/nsp3 | 1210 | L1210L | Ctg | Ttg | 2 | 3 | B.1.361 | 0.002577 |
ORF1ab/nsp3 | 1210 | L1210L | ctG | ctA | 1 | 3 | B.1.361 | 0.001289 |
ORF1ab/nsp3 | 1210 | L1210L | Ctg | Ttg | 3 | 3 | B.1.438.1 | 0.000322 |
ORF1ab/nsp3 | 1210 | L1210M | Ctg | Atg | 3 | 3 | B.1.532 | 0.018634 |
ORF1ab/nsp3 | 1210 | L1210L | Ctg | Ttg | 2 | 2 | A.23.1 | 0.001408 |
ORF1ab/nsp3 | 1210 | L1210L | ctG | ctC | 1 | 2 | AD.2 | 0.000219 |
ORF1ab/nsp3 | 1210 | L1210L | ctG | ctT | 1 | 2 | AD.2 | 0.000219 |
ORF1ab/nsp3 | 1210 | L1210K | CTg | AAg | 2 | 2 | All | 0 |
ORF1ab/nsp3 | 1210 | L1210V | Ctg | Gtg | 2 | 2 | AY.100 | 0.000092 |
ORF1ab/nsp3 | 1210 | L1210L | ctG | ctT | 2 | 2 | AY.101 | 0.000981 |
ORF1ab/nsp3 | 1210 | L1210L | Ctg | Ttg | 1 | 2 | AY.114 | 0.000231 |
ORF1ab/nsp3 | 1210 | L1210L | ctG | ctT | 1 | 2 | AY.114 | 0.000231 |
ORF1ab/nsp3 | 1210 | L1210L | ctG | ctT | 1 | 2 | AY.13 | 0.000161 |
ORF1ab/nsp3 | 1210 | L1210L | ctG | ctA | 1 | 2 | AY.13 | 0.000161 |
ORF1ab/nsp3 | 1210 | L1210L | ctG | ctT | 2 | 2 | AY.16.1 | 0.00094 |
ORF1ab/nsp3 | 1210 | L1210L | Ctg | Ttg | 1 | 2 | AY.23 | 0.00007 |
ORF1ab/nsp3 | 1210 | L1210L | ctG | ctT | 1 | 2 | AY.23 | 0.00007 |
ORF1ab/nsp3 | 1210 | L1210K | CTg | AAg | 2 | 2 | AY.25 | 0.000012 |
ORF1ab/nsp3 | 1210 | L1210L | Ctg | Ttg | 2 | 2 | AY.28 | 0.003781 |
ORF1ab/nsp3 | 1210 | L1210L | Ctg | Ttg | 2 | 2 | AY.39.1 | 0.000079 |
ORF1ab/nsp3 | 1210 | L1210L | Ctg | Ttg | 2 | 2 | AY.4.2.1 | 0.000298 |
ORF1ab/nsp3 | 1210 | L1210L | Ctg | Ttg | 1 | 2 | AY.46.6 | 0.000072 |
ORF1ab/nsp3 | 1210 | L1210L | ctG | ctA | 1 | 2 | AY.46.6 | 0.000072 |
ORF1ab/nsp3 | 1210 | L1210L | ctG | ctA | 2 | 2 | AY.57 | 0.001312 |
ORF1ab/nsp3 | 1210 | L1210L | ctG | ctT | 2 | 2 | AY.6 | 0.000082 |
ORF1ab/nsp3 | 1210 | L1210L | ctG | ctA | 1 | 2 | AY.70 | 0.000209 |
ORF1ab/nsp3 | 1210 | L1210L | Ctg | Ttg | 1 | 2 | AY.70 | 0.000209 |
ORF1ab/nsp3 | 1210 | L1210L | ctG | ctT | 2 | 2 | AY.89 | 0.009804 |
ORF1ab/nsp3 | 1210 | L1210L | Ctg | Ttg | 1 | 2 | AY.91 | 0.00073 |
ORF1ab/nsp3 | 1210 | L1210L | ctG | ctT | 1 | 2 | AY.91 | 0.00073 |
ORF1ab/nsp3 | 1210 | L1210P | cTg | cCg | 2 | 2 | B.1 | 0.000018 |
ORF1ab/nsp3 | 1210 | L1210del | CTG | --- | 2 | 2 | B.1 | 0.000018 |
ORF1ab/nsp3 | 1210 | L1210Q | cTG | cAA | 2 | 2 | B.1 | 0.000018 |
ORF1ab/nsp3 | 1210 | L1210L | Ctg | Ttg | 2 | 2 | B.1.1.28 | 0.000622 |
ORF1ab/nsp3 | 1210 | L1210L | Ctg | Ttg | 1 | 2 | B.1.1.284 | 0.000107 |
ORF1ab/nsp3 | 1210 | L1210L | ctG | ctT | 1 | 2 | B.1.1.284 | 0.000107 |
ORF1ab/nsp3 | 1210 | L1210P | cTg | cCg | 2 | 2 | B.1.1.519 | 0.000079 |
ORF1ab/nsp3 | 1210 | L1210R | cTg | cGg | 2 | 2 | B.1.1.7 | 0.000002 |
ORF1ab/nsp3 | 1210 | L1210L | Ctg | Ttg | 2 | 2 | B.1.177.39 | 0.030769 |
ORF1ab/nsp3 | 1210 | L1210L | Ctg | Ttg | 2 | 2 | B.1.177.57 | 0.000562 |
ORF1ab/nsp3 | 1210 | L1210del | CTG | --- | 2 | 2 | B.1.177.83 | 0.002963 |
ORF1ab/nsp3 | 1210 | L1210L | Ctg | Ttg | 2 | 2 | B.1.189 | 0.008584 |
ORF1ab/nsp3 | 1210 | L1210L | ctG | ctA | 1 | 2 | B.1.239 | 0.001221 |
ORF1ab/nsp3 | 1210 | L1210L | Ctg | Ttg | 1 | 2 | B.1.239 | 0.001221 |
ORF1ab/nsp3 | 1210 | L1210L | ctG | ctA | 2 | 2 | B.1.241 | 0.001623 |
ORF1ab/nsp3 | 1210 | L1210L | Ctg | Ttg | 2 | 2 | B.1.36.19 | 0.018519 |
ORF1ab/nsp3 | 1210 | L1210L | Ctg | Ttg | 2 | 2 | B.1.420 | 0.020833 |
ORF1ab/nsp3 | 1210 | L1210L | Ctg | Ttg | 1 | 2 | B.1.617.1 | 0.000129 |
ORF1ab/nsp3 | 1210 | L1210L | ctG | ctT | 1 | 2 | B.1.617.1 | 0.000129 |
ORF1ab/nsp3 | 1210 | L1210P | cTg | cCg | 2 | 2 | B.1.617.2 | 0.000008 |
ORF1ab/nsp3 | 1210 | L1210R | cTg | cGg | 2 | 2 | B.1.617.2 | 0.000008 |
ORF1ab/nsp3 | 1210 | L1210L | Ctg | Ttg | 2 | 2 | B.1.637 | 0.000146 |
ORF1ab/nsp3 | 1210 | L1210L | Ctg | Ttg | 2 | 2 | C.26 | 0.014706 |
ORF1ab/nsp3 | 1210 | L1210L | ctG | ctT | 2 | 2 | R.1 | 0.00018 |
ORF1ab/nsp3 | 1210 | L1210P | cTg | cCg | 1 | 1 | A | 0.000387 |
ORF1ab/nsp3 | 1210 | L1210L | ctG | ctT | 1 | 1 | A.2 | 0.000662 |
ORF1ab/nsp3 | 1210 | L1210L | ctG | ctT | 1 | 1 | A.2.5 | 0.000499 |
ORF1ab/nsp3 | 1210 | L1210del1 | ctG | ct- | 1 | 1 | All | 0 |
ORF1ab/nsp3 | 1210 | L1210T | CTG | ACC | 1 | 1 | All | 0 |
ORF1ab/nsp3 | 1210 | L1210M | Ctg | Atg | 1 | 1 | AM.2 | 0.111111 |
ORF1ab/nsp3 | 1210 | L1210del | CTG | --- | 1 | 1 | AY.101 | 0.00049 |
ORF1ab/nsp3 | 1210 | L1210P | cTg | cCg | 1 | 1 | AY.103 | 0.000006 |
ORF1ab/nsp3 | 1210 | L1210L | Ctg | Ttg | 1 | 1 | AY.105 | 0.000643 |
ORF1ab/nsp3 | 1210 | L1210L | ctG | ctT | 1 | 1 | AY.106 | 0.000335 |
ORF1ab/nsp3 | 1210 | L1210del | CTG | --- | 1 | 1 | AY.108 | 0.001103 |
ORF1ab/nsp3 | 1210 | L1210L | ctG | ctT | 1 | 1 | AY.109 | 0.00074 |
ORF1ab/nsp3 | 1210 | L1210L | Ctg | Ttg | 1 | 1 | AY.110 | 0.000113 |
ORF1ab/nsp3 | 1210 | L1210L | Ctg | Ttg | 1 | 1 | AY.113 | 0.000142 |
ORF1ab/nsp3 | 1210 | L1210P | cTg | cCg | 1 | 1 | AY.116.1 | 0.000311 |
ORF1ab/nsp3 | 1210 | L1210P | cTg | cCg | 1 | 1 | AY.117 | 0.000085 |
ORF1ab/nsp3 | 1210 | L1210L | ctG | ctT | 1 | 1 | AY.120.1 | 0.000321 |
ORF1ab/nsp3 | 1210 | L1210L | ctG | ctT | 1 | 1 | AY.120.2 | 0.001285 |
ORF1ab/nsp3 | 1210 | L1210L | Ctg | Ttg | 1 | 1 | AY.14 | 0.000088 |
ORF1ab/nsp3 | 1210 | L1210M | Ctg | Atg | 1 | 1 | AY.23 | 0.00007 |
ORF1ab/nsp3 | 1210 | L1210del | CTG | --- | 1 | 1 | AY.23 | 0.00007 |
ORF1ab/nsp3 | 1210 | L1210L | Ctg | Ttg | 1 | 1 | AY.24 | 0.000431 |
ORF1ab/nsp3 | 1210 | L1210P | cTg | cCg | 1 | 1 | AY.25 | 0.000006 |
ORF1ab/nsp3 | 1210 | L1210L | ctG | ctT | 1 | 1 | AY.27 | 0.000065 |
ORF1ab/nsp3 | 1210 | L1210M | Ctg | Atg | 1 | 1 | AY.29 | 0.000016 |
ORF1ab/nsp3 | 1210 | L1210P | cTg | cCg | 1 | 1 | AY.29 | 0.000016 |
ORF1ab/nsp3 | 1210 | L1210P | cTg | cCg | 1 | 1 | AY.3 | 0.00001 |
ORF1ab/nsp3 | 1210 | L1210I | CtG | AtC | 1 | 1 | AY.3 | 0.00001 |
ORF1ab/nsp3 | 1210 | L1210M | Ctg | Atg | 1 | 1 | AY.3.1 | 0.000085 |
ORF1ab/nsp3 | 1210 | L1210L | Ctg | Ttg | 1 | 1 | AY.30 | 0.000396 |
ORF1ab/nsp3 | 1210 | L1210M | Ctg | Atg | 1 | 1 | AY.32 | 0.000532 |
ORF1ab/nsp3 | 1210 | L1210del | CTG | --- | 1 | 1 | AY.33 | 0.000067 |
ORF1ab/nsp3 | 1210 | L1210L | Ctg | Ttg | 1 | 1 | AY.34.1 | 0.00051 |
ORF1ab/nsp3 | 1210 | L1210L | Ctg | Ttg | 1 | 1 | AY.35 | 0.000233 |
ORF1ab/nsp3 | 1210 | L1210Q | cTg | cAg | 1 | 1 | AY.4 | 0.000002 |
ORF1ab/nsp3 | 1210 | L1210L | Ctg | Ttg | 1 | 1 | AY.4.3 | 0.000842 |
ORF1ab/nsp3 | 1210 | L1210L | ctG | ctT | 1 | 1 | AY.4.5 | 0.000107 |
ORF1ab/nsp3 | 1210 | L1210L | ctG | ctT | 1 | 1 | AY.40 | 0.000964 |
ORF1ab/nsp3 | 1210 | L1210del | CTG | --- | 1 | 1 | AY.43 | 0.000004 |
ORF1ab/nsp3 | 1210 | L1210P | cTg | cCg | 1 | 1 | AY.43 | 0.000004 |
ORF1ab/nsp3 | 1210 | L1210del | CTG | --- | 1 | 1 | AY.44 | 0.000006 |
ORF1ab/nsp3 | 1210 | L1210P | cTg | cCg | 1 | 1 | AY.5 | 0.000021 |
ORF1ab/nsp3 | 1210 | L1210L | Ctg | Ttg | 1 | 1 | AY.53 | 0.000288 |
ORF1ab/nsp3 | 1210 | L1210L | ctG | ctA | 1 | 1 | AY.59 | 0.00053 |
ORF1ab/nsp3 | 1210 | L1210L | ctG | ctA | 1 | 1 | AY.65 | 0.000533 |
ORF1ab/nsp3 | 1210 | L1210del | CTG | --- | 1 | 1 | AY.66 | 0.00107 |
ORF1ab/nsp3 | 1210 | L1210L | ctG | ctT | 1 | 1 | AY.68 | 0.000274 |
ORF1ab/nsp3 | 1210 | L1210L | ctG | ctT | 1 | 1 | AY.69 | 0.000187 |
ORF1ab/nsp3 | 1210 | L1210del | CTG | --- | 1 | 1 | AY.74 | 0.000116 |
ORF1ab/nsp3 | 1210 | L1210L | ctG | ctT | 1 | 1 | AY.84 | 0.000437 |
ORF1ab/nsp3 | 1210 | L1210L | ctG | ctA | 1 | 1 | AY.9.1 | 0.000084 |
ORF1ab/nsp3 | 1210 | L1210P | cTg | cCg | 1 | 1 | AY.9.2 | 0.000037 |
ORF1ab/nsp3 | 1210 | L1210L | Ctg | Ttg | 1 | 1 | AY.95 | 0.000761 |
ORF1ab/nsp3 | 1210 | L1210del | CTG | --- | 1 | 1 | AY.99 | 0.001049 |
ORF1ab/nsp3 | 1210 | L1210L | ctG | ctT | 1 | 1 | AY.99 | 0.001049 |
ORF1ab/nsp3 | 1210 | L1210M | Ctg | Atg | 1 | 1 | AY.99.2 | 0.000092 |
ORF1ab/nsp3 | 1210 | L1210L | Ctg | Ttg | 1 | 1 | AZ.2 | 0.000821 |
ORF1ab/nsp3 | 1210 | L1210P | cTg | cCg | 1 | 1 | B | 0.000128 |
ORF1ab/nsp3 | 1210 | L1210M | Ctg | Atg | 1 | 1 | B.1 | 0.000009 |
ORF1ab/nsp3 | 1210 | L1210R | cTg | cGg | 1 | 1 | B.1 | 0.000009 |
ORF1ab/nsp3 | 1210 | L1210R | cTg | cGg | 1 | 1 | B.1.1 | 0.000018 |
ORF1ab/nsp3 | 1210 | L1210L | Ctg | Ttg | 1 | 1 | B.1.1.133 | 0.008475 |
ORF1ab/nsp3 | 1210 | L1210L | Ctg | Ttg | 1 | 1 | B.1.1.153 | 0.001095 |
ORF1ab/nsp3 | 1210 | L1210L | Ctg | Ttg | 1 | 1 | B.1.1.207 | 0.001182 |
ORF1ab/nsp3 | 1210 | L1210del | CTG | --- | 1 | 1 | B.1.1.214 | 0.000055 |
ORF1ab/nsp3 | 1210 | L1210L | Ctg | Ttg | 1 | 1 | B.1.1.220 | 0.001859 |
ORF1ab/nsp3 | 1210 | L1210L | ctG | ctT | 1 | 1 | B.1.1.222 | 0.000204 |
ORF1ab/nsp3 | 1210 | L1210L | Ctg | Ttg | 1 | 1 | B.1.1.228 | 0.003049 |
ORF1ab/nsp3 | 1210 | L1210L | Ctg | Ttg | 1 | 1 | B.1.1.230 | 0.009174 |
ORF1ab/nsp3 | 1210 | L1210del | CTG | --- | 1 | 1 | B.1.1.262 | 0.015152 |
ORF1ab/nsp3 | 1210 | L1210L | Ctg | Ttg | 1 | 1 | B.1.1.279 | 0.001121 |
ORF1ab/nsp3 | 1210 | L1210del | CTG | --- | 1 | 1 | B.1.1.305 | 0.003861 |
ORF1ab/nsp3 | 1210 | L1210L | ctG | ctT | 1 | 1 | B.1.1.306 | 0.000438 |
ORF1ab/nsp3 | 1210 | L1210M | Ctg | Atg | 1 | 1 | B.1.1.312 | 0.001912 |
ORF1ab/nsp3 | 1210 | L1210Q | cTG | cAA | 1 | 1 | B.1.1.315 | 0.008475 |
ORF1ab/nsp3 | 1210 | L1210Q | cTg | cAg | 1 | 1 | B.1.1.318 | 0.000302 |
ORF1ab/nsp3 | 1210 | L1210del | CTG | --- | 1 | 1 | B.1.1.348 | 0.000796 |
ORF1ab/nsp3 | 1210 | L1210L | Ctg | Ttg | 1 | 1 | B.1.1.377 | 0.001381 |
ORF1ab/nsp3 | 1210 | L1210L | Ctg | Ttg | 1 | 1 | B.1.1.432 | 0.001266 |
ORF1ab/nsp3 | 1210 | L1210L | Ctg | Ttg | 1 | 1 | B.1.1.464 | 0.001473 |
ORF1ab/nsp3 | 1210 | L1210L | Ctg | Ttg | 1 | 1 | B.1.1.467 | 0.019231 |
ORF1ab/nsp3 | 1210 | L1210del | CTG | --- | 1 | 1 | B.1.1.519 | 0.00004 |
ORF1ab/nsp3 | 1210 | L1210L | ctG | ctC | 1 | 1 | B.1.1.55 | 0.012987 |
ORF1ab/nsp3 | 1210 | L1210L | ctG | ctT | 1 | 1 | B.1.1.58 | 0.005376 |
ORF1ab/nsp3 | 1210 | L1210L | Ctg | Ttg | 1 | 1 | B.1.1.63 | 0.000386 |
ORF1ab/nsp3 | 1210 | L1210V | Ctg | Gtg | 1 | 1 | B.1.1.7 | 0.000001 |
ORF1ab/nsp3 | 1210 | L1210L | ctG | ctT | 1 | 1 | B.1.1.88 | 0.071429 |
ORF1ab/nsp3 | 1210 | L1210L | ctG | ctT | 1 | 1 | B.1.1.91 | 0.166667 |
ORF1ab/nsp3 | 1210 | L1210L | Ctg | Ttg | 1 | 1 | B.1.110.3 | 0.000718 |
ORF1ab/nsp3 | 1210 | L1210M | Ctg | Atg | 1 | 1 | B.1.139 | 0.000733 |
ORF1ab/nsp3 | 1210 | L1210L | ctG | ctT | 1 | 1 | B.1.157 | 0.002985 |
ORF1ab/nsp3 | 1210 | L1210L | ctG | ctT | 1 | 1 | B.1.160.26 | 0.002421 |
ORF1ab/nsp3 | 1210 | L1210P | cTg | cCg | 1 | 1 | B.1.177 | 0.000013 |
ORF1ab/nsp3 | 1210 | L1210V | Ctg | Gtg | 1 | 1 | B.1.177 | 0.000013 |
ORF1ab/nsp3 | 1210 | L1210L | Ctg | Ttg | 1 | 1 | B.1.177.15 | 0.000631 |
ORF1ab/nsp3 | 1210 | L1210L | ctG | ctT | 1 | 1 | B.1.177.50 | 0.004695 |
ORF1ab/nsp3 | 1210 | L1210L | Ctg | Ttg | 1 | 1 | B.1.177.6 | 0.000977 |
ORF1ab/nsp3 | 1210 | L1210del | CTG | --- | 1 | 1 | B.1.177.62 | 0.001192 |
ORF1ab/nsp3 | 1210 | L1210L | ctG | ctA | 1 | 1 | B.1.177.62 | 0.001192 |
ORF1ab/nsp3 | 1210 | L1210del | CTG | --- | 1 | 1 | B.1.177.75 | 0.001041 |
ORF1ab/nsp3 | 1210 | L1210T | CTG | ACC | 1 | 1 | B.1.177.83 | 0.001481 |
ORF1ab/nsp3 | 1210 | L1210Q | cTg | cAg | 1 | 1 | B.1.177.86 | 0.000183 |
ORF1ab/nsp3 | 1210 | L1210L | Ctg | Ttg | 1 | 1 | B.1.188 | 0.016667 |
ORF1ab/nsp3 | 1210 | L1210Q | cTG | cAA | 1 | 1 | B.1.2 | 0.000009 |
ORF1ab/nsp3 | 1210 | L1210P | cTg | cCg | 1 | 1 | B.1.2 | 0.000009 |
ORF1ab/nsp3 | 1210 | L1210M | Ctg | Atg | 1 | 1 | B.1.2 | 0.000009 |
ORF1ab/nsp3 | 1210 | L1210L | ctG | ctC | 1 | 1 | B.1.222 | 0.001692 |
ORF1ab/nsp3 | 1210 | L1210del | CTG | --- | 1 | 1 | B.1.258 | 0.000067 |
ORF1ab/nsp3 | 1210 | L1210del | CTG | --- | 1 | 1 | B.1.258.17 | 0.000104 |
ORF1ab/nsp3 | 1210 | L1210L | ctG | ctA | 1 | 1 | B.1.258.17 | 0.000104 |
ORF1ab/nsp3 | 1210 | L1210P | cTg | cCg | 1 | 1 | B.1.260 | 0.003344 |
ORF1ab/nsp3 | 1210 | L1210L | ctG | ctC | 1 | 1 | B.1.260 | 0.003344 |
ORF1ab/nsp3 | 1210 | L1210L | Ctg | Ttg | 1 | 1 | B.1.279 | 0.000514 |
ORF1ab/nsp3 | 1210 | L1210L | Ctg | Ttg | 1 | 1 | B.1.280 | 0.007143 |
ORF1ab/nsp3 | 1210 | L1210L | Ctg | Ttg | 1 | 1 | B.1.293 | 0.0125 |
ORF1ab/nsp3 | 1210 | L1210L | ctG | ctT | 1 | 1 | B.1.311 | 0.000275 |
ORF1ab/nsp3 | 1210 | L1210L | ctG | ctT | 1 | 1 | B.1.336 | 0.002439 |
ORF1ab/nsp3 | 1210 | L1210L | Ctg | Ttg | 1 | 1 | B.1.351.2 | 0.000303 |
ORF1ab/nsp3 | 1210 | L1210L | ctG | ctT | 1 | 1 | B.1.356 | 0.001727 |
ORF1ab/nsp3 | 1210 | L1210L | ctG | ctA | 1 | 1 | B.1.36.16 | 0.001425 |
ORF1ab/nsp3 | 1210 | L1210L | Ctg | Ttg | 1 | 1 | B.1.36.21 | 0.00216 |
ORF1ab/nsp3 | 1210 | L1210L | ctG | ctT | 1 | 1 | B.1.36.22 | 0.001208 |
ORF1ab/nsp3 | 1210 | L1210L | Ctg | Ttg | 1 | 1 | B.1.36.36 | 0.000602 |
ORF1ab/nsp3 | 1210 | L1210L | ctG | ctA | 1 | 1 | B.1.362 | 0.001541 |
ORF1ab/nsp3 | 1210 | L1210L | ctG | ctC | 1 | 1 | B.1.362.2 | 0.004717 |
ORF1ab/nsp3 | 1210 | L1210L | Ctg | Ttg | 1 | 1 | B.1.381 | 0.007812 |
ORF1ab/nsp3 | 1210 | L1210L | ctG | ctA | 1 | 1 | B.1.407 | 0.035714 |
ORF1ab/nsp3 | 1210 | L1210L | CtG | TtA | 1 | 1 | B.1.411 | 0.003704 |
ORF1ab/nsp3 | 1210 | L1210del | CTG | --- | 1 | 1 | B.1.429 | 0.000024 |
ORF1ab/nsp3 | 1210 | L1210L | Ctg | Ttg | 1 | 1 | B.1.456 | 0.003268 |
ORF1ab/nsp3 | 1210 | L1210L | ctG | ctA | 1 | 1 | B.1.517 | 0.000427 |
ORF1ab/nsp3 | 1210 | L1210L | Ctg | Ttg | 1 | 1 | B.1.524 | 0.001406 |
ORF1ab/nsp3 | 1210 | L1210L | Ctg | Ttg | 1 | 1 | B.1.525 | 0.000113 |
ORF1ab/nsp3 | 1210 | L1210P | cTg | cCg | 1 | 1 | B.1.525 | 0.000113 |
ORF1ab/nsp3 | 1210 | L1210del1 | ctG | ct- | 1 | 1 | B.1.525 | 0.000113 |
ORF1ab/nsp3 | 1210 | L1210L | Ctg | Ttg | 1 | 1 | B.1.565 | 0.00081 |
ORF1ab/nsp3 | 1210 | L1210L | ctG | ctT | 1 | 1 | B.1.577 | 0.000687 |
ORF1ab/nsp3 | 1210 | L1210L | Ctg | Ttg | 1 | 1 | B.1.590 | 0.004545 |
ORF1ab/nsp3 | 1210 | L1210L | ctG | ctT | 1 | 1 | B.1.595 | 0.000261 |
ORF1ab/nsp3 | 1210 | L1210M | Ctg | Atg | 1 | 1 | B.1.617.1 | 0.000129 |
ORF1ab/nsp3 | 1210 | L1210L | Ctg | Ttg | 1 | 1 | B.1.620 | 0.000946 |
ORF1ab/nsp3 | 1210 | L1210Q | cTg | cAg | 1 | 1 | B.1.621 | 0.000089 |
ORF1ab/nsp3 | 1210 | L1210L | ctG | ctT | 1 | 1 | B.1.621.1 | 0.000506 |
ORF1ab/nsp3 | 1210 | L1210L | ctG | ctT | 1 | 1 | B.1.625 | 0.002353 |
ORF1ab/nsp3 | 1210 | L1210del | CTG | --- | 1 | 1 | B.1.630 | 0.005236 |
ORF1ab/nsp3 | 1210 | L1210L | Ctg | Ttg | 1 | 1 | B.1.634 | 0.003425 |
ORF1ab/nsp3 | 1210 | L1210L | Ctg | Ttg | 1 | 1 | B.3 | 0.000831 |
ORF1ab/nsp3 | 1210 | L1210P | cTg | cCg | 1 | 1 | B.6 | 0.00091 |
ORF1ab/nsp3 | 1210 | L1210P | cTg | cCg | 1 | 1 | C.35 | 0.000774 |
ORF1ab/nsp3 | 1210 | L1210L | Ctg | Ttg | 1 | 1 | C.39 | 0.018868 |
ORF1ab/nsp3 | 1210 | L1210M | Ctg | Atg | 1 | 1 | D.2 | 0.000075 |
ORF1ab/nsp3 | 1210 | L1210P | cTg | cCg | 1 | 1 | D.2 | 0.000075 |
ORF1ab/nsp3 | 1210 | L1210Q | cTg | cAg | 1 | 1 | P.1 | 0.000016 |
ORF1ab/nsp3 | 1210 | L1210del | CTG | --- | 1 | 1 | P.1.1 | 0.000318 |
ORF1ab/nsp3 | 1210 | L1210L | ctG | ctA | 1 | 1 | P.1.10 | 0.000269 |
ORF1ab/nsp3 | 1210 | L1210Q | cTg | cAg | 1 | 1 | P.1.10.1 | 0.00813 |
ORF1ab/nsp3 | 1210 | L1210L | Ctg | Ttg | 1 | 1 | P.1.17.1 | 0.000875 |
ORF1ab/nsp3 | 1210 | L1210L | Ctg | Ttg | 1 | 1 | Q.1 | 0.000126 |
CoV-GLUE is still in development. CoV-GLUE was originally developed as part of COG-UK by Josh Singer using the GLUE framework at the MRC-University of Glasgow Centre for Virus Research (CVR). In 2021 it was redeveloped by Richard Orton to scale to the millions of genome sequences available. We acknowledge support from the MRC (MC_UU_12014/12), WT (220977/Z/20/Z) and UKRI G2P (MR/W005611/1). Please contact Richard Orton with any queries: Richard.Orton@glasgow.ac.uk
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