CoV-GLUEGenomeCountriesLineagesMutationsInsertionsDeletionsUpdated:

CoV-GLUE | Mutations | Mutation

CoV-GLUE Mutation: ORF = ORF1ab/nsp3 : CodonNum = 1206

Details of the codons used for the mutation across all lineages (CodonProp is the proportion each codon is used for this AA mutation):

ORFCodonNumMutORF1abMutMutTypeRefCodonMutCodonAACountCodonCountCodonPropGenome Position
ORF1ab/nsp31206S1206LS2024LnonsyntCgtTg663966350.9993986335-6337
ORF1ab/nsp31206S1206LS2024LnonsyntCGtTA663920.000301256335-6337
ORF1ab/nsp31206S1206LS2024LnonsynTCGCTT663910.0001506256335-6337
ORF1ab/nsp31206S1206LS2024LnonsynTCgCTg663910.0001506256335-6337
ORF1ab/nsp31206S1206SS2024SsyntcGtcA340518110.5318656335-6337
ORF1ab/nsp31206S1206SS2024SsyntcGtcT340515610.4584436335-6337
ORF1ab/nsp31206S1206SS2024SsyntcGtcC3405330.009691636335-6337
ORF1ab/nsp31206S1206AS2024AnonsynTcgGcg50450416335-6337
ORF1ab/nsp31206S1206delS2024deldelTCG---13513516335-6337
ORF1ab/nsp31206S1206TS2024TnonsynTcgAcg12012016335-6337
ORF1ab/nsp31206S1206PS2024PnonsynTcgCcg10710716335-6337
ORF1ab/nsp31206S1206XS2024XnonsyntCgtAg15140.9333336335-6337
ORF1ab/nsp31206S1206XS2024XnonsyntCGtGA1510.06666676335-6337
ORF1ab/nsp31206S1206WS2024WnonsyntCgtGg3316335-6337
ORF1ab/nsp31206S1206del1S2024del1deltcGtc-310.3333336335-6337
ORF1ab/nsp31206S1206del1S2024del1deltCGt-A310.3333336335-6337
ORF1ab/nsp31206S1206del1S2024del1deltCgt-g310.3333336335-6337
ORF1ab/nsp31206S1206ES2024EnonsynTCGGAA1116335-6337

Details of the mutation no within lineages (LineageCodonProp is the proportion the codon is observed at, at this particular site, on each lineage):

ORFCodonNumMutRefCodonMutCodonCodonCountAACountLineageLineageCodonProp
ORF1ab/nsp31206S1206LtCgtTg66356639All0.001269
ORF1ab/nsp31206S1206LtCGtTA26639All0
ORF1ab/nsp31206S1206LTCgCTg16639All0
ORF1ab/nsp31206S1206LTCGCTT16639All0
ORF1ab/nsp31206S1206StcGtcA18113405All0.000346
ORF1ab/nsp31206S1206StcGtcT15613405All0.000299
ORF1ab/nsp31206S1206StcGtcC333405All0.000006
ORF1ab/nsp31206S1206LtCgtTg16241624B.1.1.70.001454
ORF1ab/nsp31206S1206StcGtcT6011075B.1.1.70.000538
ORF1ab/nsp31206S1206StcGtcA4701075B.1.1.70.000421
ORF1ab/nsp31206S1206StcGtcC41075B.1.1.70.000004
ORF1ab/nsp31206S1206LtCgtTg874874AY.40.00136
ORF1ab/nsp31206S1206ATcgGcg504504All0.000096
ORF1ab/nsp31206S1206ATcgGcg421421AY.90.028457
ORF1ab/nsp31206S1206LtCgtTg395395AY.430.00175
ORF1ab/nsp31206S1206LtCgtTg316318B.1.20.002782
ORF1ab/nsp31206S1206LTCgCTg1318B.1.20.000009
ORF1ab/nsp31206S1206LtCGtTA1318B.1.20.000009
ORF1ab/nsp31206S1206StcGtcA305311AY.9.20.011203
ORF1ab/nsp31206S1206StcGtcT6311AY.9.20.00022
ORF1ab/nsp31206S1206StcGtcA168276AY.40.000261
ORF1ab/nsp31206S1206StcGtcT99276AY.40.000154
ORF1ab/nsp31206S1206StcGtcC9276AY.40.000014
ORF1ab/nsp31206S1206LtCgtTg234234P.1.140.011185
ORF1ab/nsp31206S1206LtCgtTg215215B.1.617.20.00081
ORF1ab/nsp31206S1206LtCgtTg199199AY.30.001979
ORF1ab/nsp31206S1206LtCgtTg172172AY.250.001035
ORF1ab/nsp31206S1206LtCgtTg154154B.1.10.002794
ORF1ab/nsp31206S1206LtCgtTg153153AY.390.003781
ORF1ab/nsp31206S1206StcGtcA84147B.1.617.20.000316
ORF1ab/nsp31206S1206StcGtcT61147B.1.617.20.00023
ORF1ab/nsp31206S1206StcGtcC2147B.1.617.20.000008
ORF1ab/nsp31206S1206LtCgtTg136136P.10.002143
ORF1ab/nsp31206S1206delTCG---135135All0.000026
ORF1ab/nsp31206S1206LtCgtTg131131AY.440.000797
ORF1ab/nsp31206S1206LtCgtTg123123B.1.1770.00162
ORF1ab/nsp31206S1206TTcgAcg120120All0.000023
ORF1ab/nsp31206S1206LtCgtTg119119B.1.1600.003711
ORF1ab/nsp31206S1206LtCgtTg114114AY.470.003546
ORF1ab/nsp31206S1206TTcgAcg110110AY.40.000171
ORF1ab/nsp31206S1206PTcgCcg107107All0.00002
ORF1ab/nsp31206S1206StcGtcA6695AY.1030.00041
ORF1ab/nsp31206S1206StcGtcT2995AY.1030.00018
ORF1ab/nsp31206S1206StcGtcT6091AY.30.000597
ORF1ab/nsp31206S1206StcGtcA2791AY.30.000269
ORF1ab/nsp31206S1206StcGtcC491AY.30.00004
ORF1ab/nsp31206S1206StcGtcA7689P.1.140.003633
ORF1ab/nsp31206S1206StcGtcT1389P.1.140.000621
ORF1ab/nsp31206S1206LtCgtTg8080AY.1030.000497
ORF1ab/nsp31206S1206LtCgtTg7878B.1.5260.001833
ORF1ab/nsp31206S1206LtCgtTg7171B.10.00065
ORF1ab/nsp31206S1206StcGtcT5469B.1.20.000475
ORF1ab/nsp31206S1206StcGtcA1569B.1.20.000132
ORF1ab/nsp31206S1206StcGtcA4268AY.430.000186
ORF1ab/nsp31206S1206StcGtcT2668AY.430.000115
ORF1ab/nsp31206S1206delTCG---6666B.1.1.2621
ORF1ab/nsp31206S1206StcGtcA6161AY.940.027003
ORF1ab/nsp31206S1206StcGtcT5357B.1.10.000961
ORF1ab/nsp31206S1206StcGtcA357B.1.10.000054
ORF1ab/nsp31206S1206StcGtcC157B.1.10.000018
ORF1ab/nsp31206S1206LtCgtTg5656B.1.1.2220.011424
ORF1ab/nsp31206S1206StcGtcA5353C.370.006151
ORF1ab/nsp31206S1206LtCgtTg5050AY.1180.003132
ORF1ab/nsp31206S1206LtCgtTg4646B.1.177.810.008709
ORF1ab/nsp31206S1206StcGtcT2544AY.250.00015
ORF1ab/nsp31206S1206StcGtcA1944AY.250.000114
ORF1ab/nsp31206S1206LtCgtTg4343B.1.177.170.035304
ORF1ab/nsp31206S1206StcGtcA3742B.1.1.280.011516
ORF1ab/nsp31206S1206StcGtcT542B.1.1.280.001556
ORF1ab/nsp31206S1206LtCgtTg4040B.1.1.5190.001588
ORF1ab/nsp31206S1206LtCgtTg4040B.1.4290.000941
ORF1ab/nsp31206S1206PTcgCcg3939B.1.1.70.000035
ORF1ab/nsp31206S1206StcGtcA3838B.1.5050.166667
ORF1ab/nsp31206S1206StcGtcT3838B.280.12459
ORF1ab/nsp31206S1206LtCgtTg3737B.1.2210.002628
ORF1ab/nsp31206S1206StcGtcT3737B.1.258.170.003847
ORF1ab/nsp31206S1206StcGtcT2236AY.1020.000583
ORF1ab/nsp31206S1206StcGtcA1436AY.1020.000371
ORF1ab/nsp31206S1206StcGtcT1936B.10.000174
ORF1ab/nsp31206S1206StcGtcA1636B.10.000147
ORF1ab/nsp31206S1206StcGtcC136B.10.000009
ORF1ab/nsp31206S1206StcGtcA2036P.10.000315
ORF1ab/nsp31206S1206StcGtcT1636P.10.000252
ORF1ab/nsp31206S1206LtCgtTg3535B.1.3510.00104
ORF1ab/nsp31206S1206StcGtcA3133AY.260.000878
ORF1ab/nsp31206S1206StcGtcT233AY.260.000057
ORF1ab/nsp31206S1206StcGtcA1933AY.440.000116
ORF1ab/nsp31206S1206StcGtcT1433AY.440.000085
ORF1ab/nsp31206S1206StcGtcT3333B.1.1.2160.029386
ORF1ab/nsp31206S1206LtCgtTg3232B.1.416.10.05
ORF1ab/nsp31206S1206LtCgtTg3131AY.1190.001095
ORF1ab/nsp31206S1206LtCgtTg2727AY.260.000764
ORF1ab/nsp31206S1206LtCgtTg2626AY.1000.001196
ORF1ab/nsp31206S1206StcGtcA1826AY.1190.000636
ORF1ab/nsp31206S1206StcGtcC626AY.1190.000212
ORF1ab/nsp31206S1206StcGtcT226AY.1190.000071
ORF1ab/nsp31206S1206LtCgtTg2525B.1.4270.001262
ORF1ab/nsp31206S1206ATcgGcg2525B.1.617.20.000094
ORF1ab/nsp31206S1206StcGtcT2424AY.380.011982
ORF1ab/nsp31206S1206StcGtcA2424AY.580.021779
ORF1ab/nsp31206S1206LtCgtTg2222AY.1020.000583
ORF1ab/nsp31206S1206LtCgtTg2222AY.290.000347
ORF1ab/nsp31206S1206StcGtcT1722AY.390.00042
ORF1ab/nsp31206S1206StcGtcA522AY.390.000124
ORF1ab/nsp31206S1206LtCgtTg2222AY.420.000885
ORF1ab/nsp31206S1206LtCgtTg2222B.1.2430.001531
ORF1ab/nsp31206S1206StcGtcT2222B.1.6210.001947
ORF1ab/nsp31206S1206PTcgCcg2121AY.1110.003846
ORF1ab/nsp31206S1206LtCgtTg2121AY.1200.000781
ORF1ab/nsp31206S1206LtCgtTg2121B.1.1.1450.777778
ORF1ab/nsp31206S1206LtCgtTg2121B.1.1.3160.019426
ORF1ab/nsp31206S1206StcGtcA1819AY.1060.006028
ORF1ab/nsp31206S1206StcGtcT119AY.1060.000335
ORF1ab/nsp31206S1206LtCgtTg1818AY.230.001255
ORF1ab/nsp31206S1206LtCgtTg1818AY.3.10.001535
ORF1ab/nsp31206S1206LtCgtTg1818AY.360.002668
ORF1ab/nsp31206S1206LtCgtTg1818AY.50.000372
ORF1ab/nsp31206S1206StcGtcA1818B.1.1.4340.006274
ORF1ab/nsp31206S1206LtCgtTg1818B.1.1810.352941
ORF1ab/nsp31206S1206StcGtcT1818B.1.3670.014263
ORF1ab/nsp31206S1206LtCgtTg1818B.1.6210.001593
ORF1ab/nsp31206S1206LtCgtTg1818C.370.002089
ORF1ab/nsp31206S1206LtCgtTg1717AY.330.001135
ORF1ab/nsp31206S1206XtCgtAg1415All0.000003
ORF1ab/nsp31206S1206XtCGtGA115All0
ORF1ab/nsp31206S1206LtCgtTg1515AY.1170.001268
ORF1ab/nsp31206S1206LtCgtTg1515AY.4.20.000325
ORF1ab/nsp31206S1206StcGtcT915B.1.3510.000268
ORF1ab/nsp31206S1206StcGtcA615B.1.3510.000178
ORF1ab/nsp31206S1206LtCgtTg1414AY.46.60.001011
ORF1ab/nsp31206S1206LtCgtTg1313AD.20.002847
ORF1ab/nsp31206S1206delTCG---1313B.1.1.70.000012
ORF1ab/nsp31206S1206LtCgtTg1313B.1.2380.19403
ORF1ab/nsp31206S1206LtCgtTg1313Q.30.001885
ORF1ab/nsp31206S1206LtCgtTg1212B.1.1.280.003735
ORF1ab/nsp31206S1206LtCgtTg1212B.1.1.3170.00494
ORF1ab/nsp31206S1206LtCgtTg1212B.1.3770.054795
ORF1ab/nsp31206S1206LtCgtTg1212B.1.5640.005111
ORF1ab/nsp31206S1206PTcgCcg1212P.1.170.001941
ORF1ab/nsp31206S1206LtCgtTg1111AY.39.10.000436
ORF1ab/nsp31206S1206StcGtcT1111AY.610.001153
ORF1ab/nsp31206S1206LtCgtTg1111AY.670.005107
ORF1ab/nsp31206S1206LtCgtTg1111AY.98.10.000533
ORF1ab/nsp31206S1206delTCG---1111B.1.160.140.023305
ORF1ab/nsp31206S1206LtCgtTg1010AY.4.2.10.00149
ORF1ab/nsp31206S1206LtCgtTg1010AY.790.012107
ORF1ab/nsp31206S1206LtCgtTg1010B.1.1.1760.004394
ORF1ab/nsp31206S1206StcGtcT810B.1.1770.000105
ORF1ab/nsp31206S1206StcGtcA110B.1.1770.000013
ORF1ab/nsp31206S1206StcGtcC110B.1.1770.000013
ORF1ab/nsp31206S1206StcGtcA610B.1.4290.000141
ORF1ab/nsp31206S1206StcGtcT410B.1.4290.000094
ORF1ab/nsp31206S1206StcGtcT910B.1.5260.000212
ORF1ab/nsp31206S1206StcGtcA110B.1.5260.000024
ORF1ab/nsp31206S1206StcGtcT99AM.21
ORF1ab/nsp31206S1206LtCgtTg99AY.610.000943
ORF1ab/nsp31206S1206LtCgtTg99AY.9.20.000331
ORF1ab/nsp31206S1206StcGtcA99B.1.1.5250.04918
ORF1ab/nsp31206S1206LtCgtTg99B.1.2400.00194
ORF1ab/nsp31206S1206StcGtcT69B.1.4000.002574
ORF1ab/nsp31206S1206StcGtcA39B.1.4000.001287
ORF1ab/nsp31206S1206StcGtcT99B.1.5090.007792
ORF1ab/nsp31206S1206LtCgtTg99B.1.5960.000784
ORF1ab/nsp31206S1206PTcgCcg88AY.40.000012
ORF1ab/nsp31206S1206StcGtcT68AY.4.20.00013
ORF1ab/nsp31206S1206StcGtcA28AY.4.20.000043
ORF1ab/nsp31206S1206StcGtcT88B.1.1.3280.135593
ORF1ab/nsp31206S1206LtCgtTg88B.1.177.210.000612
ORF1ab/nsp31206S1206delTCG---88B.1.177.30.061069
ORF1ab/nsp31206S1206LtCgtTg88B.1.6280.002819
ORF1ab/nsp31206S1206StcGtcA67AY.1200.000223
ORF1ab/nsp31206S1206StcGtcT17AY.1200.000037
ORF1ab/nsp31206S1206LtCgtTg77AY.200.000272
ORF1ab/nsp31206S1206LtCgtTg77AY.750.000392
ORF1ab/nsp31206S1206LtCgtTg77AY.99.20.000645
ORF1ab/nsp31206S1206XtCgtAg77B.10.000064
ORF1ab/nsp31206S1206StcGtcA67B.1.1600.000187
ORF1ab/nsp31206S1206StcGtcT17B.1.1600.000031
ORF1ab/nsp31206S1206LtCgtTg77B.1.177.330.011513
ORF1ab/nsp31206S1206LtCgtTg77B.1.3780.047945
ORF1ab/nsp31206S1206StcGtcA47B.1.4700.005618
ORF1ab/nsp31206S1206StcGtcT37B.1.4700.004213
ORF1ab/nsp31206S1206LtCgtTg77B.1.5250.000792
ORF1ab/nsp31206S1206StcGtcA67B.1.5960.000523
ORF1ab/nsp31206S1206StcGtcT17B.1.5960.000087
ORF1ab/nsp31206S1206LtCgtTg77B.1.6200.006623
ORF1ab/nsp31206S1206ATcgGcg77P.1.10.002224
ORF1ab/nsp31206S1206StcGtcT66A0.002322
ORF1ab/nsp31206S1206StcGtcT66AY.10.002374
ORF1ab/nsp31206S1206LtCgtTg66AY.1060.002009
ORF1ab/nsp31206S1206StcGtcA36AY.200.000117
ORF1ab/nsp31206S1206StcGtcT36AY.200.000117
ORF1ab/nsp31206S1206StcGtcT46AY.290.000063
ORF1ab/nsp31206S1206StcGtcA26AY.290.000032
ORF1ab/nsp31206S1206StcGtcA46AY.460.000416
ORF1ab/nsp31206S1206StcGtcT26AY.460.000208
ORF1ab/nsp31206S1206StcGtcA46AY.50.000083
ORF1ab/nsp31206S1206StcGtcT26AY.50.000041
ORF1ab/nsp31206S1206StcGtcT46AY.99.20.000369
ORF1ab/nsp31206S1206StcGtcA26AY.99.20.000184
ORF1ab/nsp31206S1206StcGtcT66B.1.1.1890.009077
ORF1ab/nsp31206S1206LtCgtTg66B.1.1.2140.000333
ORF1ab/nsp31206S1206StcGtcT56B.1.1.2140.000277
ORF1ab/nsp31206S1206StcGtcA16B.1.1.2140.000055
ORF1ab/nsp31206S1206ATcgGcg66B.1.1.70.000005
ORF1ab/nsp31206S1206StcGtcT46B.1.2430.000278
ORF1ab/nsp31206S1206StcGtcA26B.1.2430.000139
ORF1ab/nsp31206S1206LtCgtTg66B.1.466.20.002347
ORF1ab/nsp31206S1206StcGtcT66P.70.026201
ORF1ab/nsp31206S1206LtCgtTg66R.10.00054
ORF1ab/nsp31206S1206LtCgtTg55AE.80.002445
ORF1ab/nsp31206S1206StcGtcT45AY.1180.000251
ORF1ab/nsp31206S1206StcGtcA15AY.1180.000063
ORF1ab/nsp31206S1206LtCgtTg45AY.1210.000541
ORF1ab/nsp31206S1206LtCGtTA15AY.1210.000135
ORF1ab/nsp31206S1206LtCgtTg55AY.140.00044
ORF1ab/nsp31206S1206ATcgGcg55AY.430.000022
ORF1ab/nsp31206S1206LtCgtTg55AY.450.000608
ORF1ab/nsp31206S1206LtCgtTg55AY.5.40.001384
ORF1ab/nsp31206S1206LtCgtTg55AY.980.000395
ORF1ab/nsp31206S1206StcGtcT45B0.000511
ORF1ab/nsp31206S1206StcGtcA15B0.000128
ORF1ab/nsp31206S1206LtCgtTg55B.1.1.370.000964
ORF1ab/nsp31206S1206LtCgtTg55B.1.1.390.002548
ORF1ab/nsp31206S1206StcGtcA55B.1.1.5190.000199
ORF1ab/nsp31206S1206LtCgtTg55B.1.177.650.003327
ORF1ab/nsp31206S1206LtCgtTg55B.1.214.20.002998
ORF1ab/nsp31206S1206StcGtcT45B.1.438.10.000429
ORF1ab/nsp31206S1206StcGtcA15B.1.438.10.000107
ORF1ab/nsp31206S1206StcGtcA55B.1.5560.037594
ORF1ab/nsp31206S1206StcGtcT35B.1.617.10.000387
ORF1ab/nsp31206S1206StcGtcA25B.1.617.10.000258
ORF1ab/nsp31206S1206LtCgtTg55B.1.6370.000365
ORF1ab/nsp31206S1206LtCgtTg55P.1.120.00242
ORF1ab/nsp31206S1206LtCgtTg55Q.10.000632
ORF1ab/nsp31206S1206LtCgtTg44AY.120.001264
ORF1ab/nsp31206S1206ATcgGcg44AY.200.000155
ORF1ab/nsp31206S1206StcGtcT34AY.420.000121
ORF1ab/nsp31206S1206StcGtcA14AY.420.00004
ORF1ab/nsp31206S1206ATcgGcg44AY.440.000024
ORF1ab/nsp31206S1206StcGtcT44AY.520.003257
ORF1ab/nsp31206S1206ATcgGcg44AY.540.000381
ORF1ab/nsp31206S1206LtCgtTg44AY.60.000165
ORF1ab/nsp31206S1206StcGtcT44AY.750.000224
ORF1ab/nsp31206S1206LtCgtTg44AY.75.10.000721
ORF1ab/nsp31206S1206StcGtcA44AY.880.003537
ORF1ab/nsp31206S1206LtCgtTg44AY.950.003044
ORF1ab/nsp31206S1206LtCgtTg44B0.000511
ORF1ab/nsp31206S1206PTcgCcg44B.1.10.000073
ORF1ab/nsp31206S1206StcGtcT44B.1.1.3480.003185
ORF1ab/nsp31206S1206LtCgtTg44B.1.1.5000.08
ORF1ab/nsp31206S1206LtCgtTg44B.1.177.400.020619
ORF1ab/nsp31206S1206LtCgtTg44B.1.2060.003263
ORF1ab/nsp31206S1206delTCG---44B.1.2340.000528
ORF1ab/nsp31206S1206StcGtcT24B.1.360.000292
ORF1ab/nsp31206S1206StcGtcA24B.1.360.000292
ORF1ab/nsp31206S1206LtCgtTg44B.1.3690.001141
ORF1ab/nsp31206S1206LtCgtTg44B.1.3960.002823
ORF1ab/nsp31206S1206StcGtcA34B.1.6280.001057
ORF1ab/nsp31206S1206StcGtcT14B.1.6280.000352
ORF1ab/nsp31206S1206delTCG---44P.10.000063
ORF1ab/nsp31206S1206StcGtcT44Q.80.00066
ORF1ab/nsp31206S1206StcGtcT34R.10.00027
ORF1ab/nsp31206S1206StcGtcA14R.10.00009
ORF1ab/nsp31206S1206WtCgtGg33All0.000001
ORF1ab/nsp31206S1206del1tCGt-A13All0
ORF1ab/nsp31206S1206del1tcGtc-13All0
ORF1ab/nsp31206S1206del1tCgt-g13All0
ORF1ab/nsp31206S1206StcGtcT23AY.1210.000271
ORF1ab/nsp31206S1206StcGtcA13AY.1210.000135
ORF1ab/nsp31206S1206LtCgtTg33AY.130.000483
ORF1ab/nsp31206S1206StcGtcA33AY.130.000483
ORF1ab/nsp31206S1206ATcgGcg33AY.130.000483
ORF1ab/nsp31206S1206delTCG---33AY.250.000018
ORF1ab/nsp31206S1206PTcgCcg33AY.30.00003
ORF1ab/nsp31206S1206StcGtcT33AY.360.000445
ORF1ab/nsp31206S1206delTCG---33AY.40.000005
ORF1ab/nsp31206S1206ATcgGcg33AY.40.000005
ORF1ab/nsp31206S1206XtCgtAg33AY.430.000013
ORF1ab/nsp31206S1206LtCgtTg33AY.46.50.000595
ORF1ab/nsp31206S1206LtCgtTg33AY.480.001395
ORF1ab/nsp31206S1206LtCgtTg33AY.560.004815
ORF1ab/nsp31206S1206LtCgtTg33AY.640.001786
ORF1ab/nsp31206S1206StcGtcT33AY.75.10.000541
ORF1ab/nsp31206S1206LtCgtTg33AY.90.000203
ORF1ab/nsp31206S1206StcGtcA23AY.90.000135
ORF1ab/nsp31206S1206StcGtcT13AY.90.000068
ORF1ab/nsp31206S1206LtCgtTg33AY.9.10.000251
ORF1ab/nsp31206S1206StcGtcT23AY.910.001461
ORF1ab/nsp31206S1206StcGtcA13AY.910.00073
ORF1ab/nsp31206S1206StcGtcT23AY.98.10.000097
ORF1ab/nsp31206S1206StcGtcA13AY.98.10.000048
ORF1ab/nsp31206S1206PTcgCcg33B.10.000027
ORF1ab/nsp31206S1206ATcgGcg33B.1.10.000054
ORF1ab/nsp31206S1206LtCgtTg33B.1.1.1740.010135
ORF1ab/nsp31206S1206LtCgtTg33B.1.1.2550.009091
ORF1ab/nsp31206S1206LtCgtTg33B.1.1.2840.000322
ORF1ab/nsp31206S1206StcGtcT33B.1.1.3220.026316
ORF1ab/nsp31206S1206StcGtcT33B.1.1.4160.002715
ORF1ab/nsp31206S1206LtCgtTg33B.1.1.4870.01676
ORF1ab/nsp31206S1206TTcgAcg33B.1.1.70.000003
ORF1ab/nsp31206S1206delTCG---33B.1.1770.00004
ORF1ab/nsp31206S1206StcGtcT33B.1.177.750.003122
ORF1ab/nsp31206S1206LtCgtTg33B.1.177.860.00055
ORF1ab/nsp31206S1206LtCgtTg33B.1.2340.000396
ORF1ab/nsp31206S1206StcGtcT33B.1.2390.003663
ORF1ab/nsp31206S1206LtCgtTg33B.1.2580.0002
ORF1ab/nsp31206S1206StcGtcA33B.1.2600.010033
ORF1ab/nsp31206S1206LtCgtTg33B.1.3110.000824
ORF1ab/nsp31206S1206LtCgtTg33B.1.4970.000944
ORF1ab/nsp31206S1206LtCgtTg33B.1.5900.013636
ORF1ab/nsp31206S1206LtCgtTg33D.20.000225
ORF1ab/nsp31206S1206LtCgtTg33P.1.60.005837
ORF1ab/nsp31206S1206LtCgtTg33P.1.70.000958
ORF1ab/nsp31206S1206LtCgtTg33P.20.00056
ORF1ab/nsp31206S1206StcGtcA33Q.30.000435
ORF1ab/nsp31206S1206LtCgtTg22A.2.5.10.009615
ORF1ab/nsp31206S1206LtCgtTg22A.210.00554
ORF1ab/nsp31206S1206StcGtcT22A.23.10.001408
ORF1ab/nsp31206S1206StcGtcT22AM.40.007143
ORF1ab/nsp31206S1206LtCgtTg22AY.1080.002205
ORF1ab/nsp31206S1206StcGtcT12AY.230.00007
ORF1ab/nsp31206S1206StcGtcA12AY.230.00007
ORF1ab/nsp31206S1206LtCgtTg22AY.240.000862
ORF1ab/nsp31206S1206PTcgCcg22AY.260.000057
ORF1ab/nsp31206S1206LtCgtTg22AY.270.000129
ORF1ab/nsp31206S1206LtCgtTg22AY.29.10.000441
ORF1ab/nsp31206S1206StcGtcT12AY.3.10.000085
ORF1ab/nsp31206S1206StcGtcA12AY.3.10.000085
ORF1ab/nsp31206S1206StcGtcT22AY.320.001065
ORF1ab/nsp31206S1206LtCgtTg22AY.340.000194
ORF1ab/nsp31206S1206LtCgtTg22AY.34.10.00102
ORF1ab/nsp31206S1206StcGtcA22AY.350.000466
ORF1ab/nsp31206S1206LtCgtTg22AY.370.000632
ORF1ab/nsp31206S1206StcGtcA22AY.370.000632
ORF1ab/nsp31206S1206StcGtcT12AY.39.10.00004
ORF1ab/nsp31206S1206StcGtcA12AY.39.10.00004
ORF1ab/nsp31206S1206LtCgtTg22AY.4.50.000215
ORF1ab/nsp31206S1206PTcgCcg22AY.420.00008
ORF1ab/nsp31206S1206StcGtcA22AY.450.000243
ORF1ab/nsp31206S1206LtCgtTg22AY.460.000208
ORF1ab/nsp31206S1206StcGtcA12AY.5.40.000277
ORF1ab/nsp31206S1206StcGtcT12AY.5.40.000277
ORF1ab/nsp31206S1206LtCgtTg22AY.590.001059
ORF1ab/nsp31206S1206StcGtcT22AY.70.000392
ORF1ab/nsp31206S1206StcGtcT22AY.7.10.000225
ORF1ab/nsp31206S1206StcGtcT22AY.710.00095
ORF1ab/nsp31206S1206LtCgtTg22AY.740.000231
ORF1ab/nsp31206S1206StcGtcT22AY.740.000231
ORF1ab/nsp31206S1206LtCgtTg22AY.840.000875
ORF1ab/nsp31206S1206StcGtcA22AY.9.10.000167
ORF1ab/nsp31206S1206LtCgtTg22AY.900.001369
ORF1ab/nsp31206S1206LtCgtTg22AY.920.000575
ORF1ab/nsp31206S1206delTCG---22AY.99.20.000184
ORF1ab/nsp31206S1206ATcgGcg22B0.000256
ORF1ab/nsp31206S1206delTCG---22B.10.000018
ORF1ab/nsp31206S1206LtCgtTg22B.1.1.2040.006079
ORF1ab/nsp31206S1206LtCgtTg22B.1.1.2160.001781
ORF1ab/nsp31206S1206StcGtcA22B.1.1.2220.000408
ORF1ab/nsp31206S1206StcGtcT22B.1.1.2440.030769
ORF1ab/nsp31206S1206PTcgCcg22B.1.1.280.000622
ORF1ab/nsp31206S1206StcGtcA22B.1.1.330.000842
ORF1ab/nsp31206S1206LtCgtTg22B.1.1.3620.011236
ORF1ab/nsp31206S1206StcGtcT22B.1.1.40.005952
ORF1ab/nsp31206S1206LtCgtTg22B.1.1.4190.014815
ORF1ab/nsp31206S1206LtCgtTg22B.1.1.4200.002012
ORF1ab/nsp31206S1206LtCgtTg22B.1.177.520.003515
ORF1ab/nsp31206S1206LtCgtTg22B.1.177.600.000437
ORF1ab/nsp31206S1206LtCgtTg22B.1.177.830.002963
ORF1ab/nsp31206S1206LtCgtTg22B.1.258.170.000208
ORF1ab/nsp31206S1206LtCgtTg22B.1.351.20.000605
ORF1ab/nsp31206S1206LtCgtTg22B.1.36.190.018519
ORF1ab/nsp31206S1206LtCgtTg22B.1.36.290.001035
ORF1ab/nsp31206S1206LtCgtTg22B.1.36.70.008
ORF1ab/nsp31206S1206LtCgtTg22B.1.4080.00738
ORF1ab/nsp31206S1206PTcgCcg22B.1.4220.001625
ORF1ab/nsp31206S1206StcGtcA22B.1.4250.005988
ORF1ab/nsp31206S1206LtCgtTg22B.1.4360.002058
ORF1ab/nsp31206S1206LtCgtTg22B.1.4560.006536
ORF1ab/nsp31206S1206LtCgtTg22B.1.4660.046512
ORF1ab/nsp31206S1206LtCgtTg22B.1.4890.086957
ORF1ab/nsp31206S1206StcGtcA22B.1.5610.000794
ORF1ab/nsp31206S1206LtCgtTg22B.1.617.10.000258
ORF1ab/nsp31206S1206TTcgAcg22B.1.617.20.000008
ORF1ab/nsp31206S1206LtCgtTg22B.1.6270.00404
ORF1ab/nsp31206S1206StcGtcT22B.290.007018
ORF1ab/nsp31206S1206StcGtcT22C.10.004785
ORF1ab/nsp31206S1206LtCgtTg22C.130.051282
ORF1ab/nsp31206S1206StcGtcA22C.37.10.005236
ORF1ab/nsp31206S1206LtCgtTg22P.1.10.000635
ORF1ab/nsp31206S1206LtCgtTg22P.1.170.000324
ORF1ab/nsp31206S1206StcGtcA12P.1.70.000319
ORF1ab/nsp31206S1206StcGtcT12P.1.70.000319
ORF1ab/nsp31206S1206LtCgtTg22P.1.80.009569
ORF1ab/nsp31206S1206LtCgtTg22P.70.008734
ORF1ab/nsp31206S1206LtCgtTg22Q.40.00091
ORF1ab/nsp31206S1206XtCgtAg11A0.000387
ORF1ab/nsp31206S1206ATcgGcg11A.2.50.000499
ORF1ab/nsp31206S1206LtCgtTg11A.2.50.000499
ORF1ab/nsp31206S1206LtCgtTg11A.270.001656
ORF1ab/nsp31206S1206StcGtcA11AA.10.007246
ORF1ab/nsp31206S1206StcGtcA11AE.50.018519
ORF1ab/nsp31206S1206StcGtcA11AE.80.000489
ORF1ab/nsp31206S1206LtCgtTg11AJ.10.045455
ORF1ab/nsp31206S1206ETCGGAA11All0
ORF1ab/nsp31206S1206LtCgtTg11AU.10.001266
ORF1ab/nsp31206S1206StcGtcA11AU.30.00211
ORF1ab/nsp31206S1206LtCgtTg11AY.10.000396
ORF1ab/nsp31206S1206ATcgGcg11AY.100.00053
ORF1ab/nsp31206S1206StcGtcT11AY.1000.000046
ORF1ab/nsp31206S1206delTCG---11AY.1010.00049
ORF1ab/nsp31206S1206PTcgCcg11AY.1010.00049
ORF1ab/nsp31206S1206PTcgCcg11AY.1020.000027
ORF1ab/nsp31206S1206del1tcGtc-11AY.1030.000006
ORF1ab/nsp31206S1206ATcgGcg11AY.1030.000006
ORF1ab/nsp31206S1206LtCgtTg11AY.1090.00074
ORF1ab/nsp31206S1206StcGtcT11AY.110.001339
ORF1ab/nsp31206S1206LtCgtTg11AY.1130.000142
ORF1ab/nsp31206S1206StcGtcA11AY.1130.000142
ORF1ab/nsp31206S1206LtCgtTg11AY.1140.000231
ORF1ab/nsp31206S1206StcGtcT11AY.116.10.000311
ORF1ab/nsp31206S1206StcGtcT11AY.1170.000085
ORF1ab/nsp31206S1206LtCgtTg11AY.120.10.000321
ORF1ab/nsp31206S1206PTcgCcg11AY.130.000161
ORF1ab/nsp31206S1206LtCgtTg11AY.16.10.00047
ORF1ab/nsp31206S1206StcGtcT11AY.16.10.00047
ORF1ab/nsp31206S1206delTCG---11AY.230.00007
ORF1ab/nsp31206S1206StcGtcA11AY.240.000431
ORF1ab/nsp31206S1206ATcgGcg11AY.250.000006
ORF1ab/nsp31206S1206TTcgAcg11AY.250.000006
ORF1ab/nsp31206S1206WtCgtGg11AY.290.000016
ORF1ab/nsp31206S1206delTCG---11AY.30.00001
ORF1ab/nsp31206S1206LtCgtTg11AY.320.000532
ORF1ab/nsp31206S1206StcGtcA11AY.330.000067
ORF1ab/nsp31206S1206delTCG---11AY.330.000067
ORF1ab/nsp31206S1206TTcgAcg11AY.390.000025
ORF1ab/nsp31206S1206ATcgGcg11AY.390.000025
ORF1ab/nsp31206S1206StcGtcA11AY.4.2.10.000149
ORF1ab/nsp31206S1206LtCgtTg11AY.4.40.000409
ORF1ab/nsp31206S1206PTcgCcg11AY.4.50.000107
ORF1ab/nsp31206S1206XtCgtAg11AY.4.50.000107
ORF1ab/nsp31206S1206StcGtcT11AY.400.000964
ORF1ab/nsp31206S1206del1tCGt-A11AY.440.000006
ORF1ab/nsp31206S1206XtCGtGA11AY.440.000006
ORF1ab/nsp31206S1206delTCG---11AY.440.000006
ORF1ab/nsp31206S1206LtCgtTg11AY.46.20.000635
ORF1ab/nsp31206S1206StcGtcA11AY.46.30.000934
ORF1ab/nsp31206S1206StcGtcT11AY.46.60.000072
ORF1ab/nsp31206S1206ATcgGcg11AY.46.60.000072
ORF1ab/nsp31206S1206PTcgCcg11AY.470.000031
ORF1ab/nsp31206S1206ATcgGcg11AY.470.000031
ORF1ab/nsp31206S1206ATcgGcg11AY.50.000021
ORF1ab/nsp31206S1206LtCgtTg11AY.500.000799
ORF1ab/nsp31206S1206StcGtcC11AY.510.000909
ORF1ab/nsp31206S1206XtCgtAg11AY.520.000814
ORF1ab/nsp31206S1206LtCgtTg11AY.540.000095
ORF1ab/nsp31206S1206ATcgGcg11AY.590.00053
ORF1ab/nsp31206S1206StcGtcT11AY.60.000041
ORF1ab/nsp31206S1206ATcgGcg11AY.600.000938
ORF1ab/nsp31206S1206StcGtcT11AY.600.000938
ORF1ab/nsp31206S1206ATcgGcg11AY.610.000105
ORF1ab/nsp31206S1206StcGtcT11AY.620.000436
ORF1ab/nsp31206S1206LtCgtTg11AY.620.000436
ORF1ab/nsp31206S1206delTCG---11AY.660.00107
ORF1ab/nsp31206S1206StcGtcA11AY.680.000274
ORF1ab/nsp31206S1206LtCgtTg11AY.70.000196
ORF1ab/nsp31206S1206LtCgtTg11AY.7.20.000559
ORF1ab/nsp31206S1206LtCgtTg11AY.700.000209
ORF1ab/nsp31206S1206LtCgtTg11AY.710.000475
ORF1ab/nsp31206S1206StcGtcT11AY.720.001361
ORF1ab/nsp31206S1206LtCgtTg11AY.730.000665
ORF1ab/nsp31206S1206del1tCgt-g11AY.760.004831
ORF1ab/nsp31206S1206LtCgtTg11AY.760.004831
ORF1ab/nsp31206S1206StcGtcA11AY.770.001127
ORF1ab/nsp31206S1206delTCG---11AY.850.000427
ORF1ab/nsp31206S1206ATcgGcg11AY.9.20.000037
ORF1ab/nsp31206S1206LtCgtTg11AY.910.00073
ORF1ab/nsp31206S1206ATcgGcg11AY.950.000761
ORF1ab/nsp31206S1206ATcgGcg11AY.990.001049
ORF1ab/nsp31206S1206delTCG---11AY.990.001049
ORF1ab/nsp31206S1206LtCgtTg11AZ.10.000867
ORF1ab/nsp31206S1206WtCgtGg11B.10.000009
ORF1ab/nsp31206S1206TTcgAcg11B.1.10.000018
ORF1ab/nsp31206S1206LtCgtTg11B.1.1.10.000327
ORF1ab/nsp31206S1206LtCgtTg11B.1.1.100.001115
ORF1ab/nsp31206S1206StcGtcA11B.1.1.100.001115
ORF1ab/nsp31206S1206StcGtcT11B.1.1.1010.01
ORF1ab/nsp31206S1206StcGtcT11B.1.1.1530.001095
ORF1ab/nsp31206S1206StcGtcA11B.1.1.1590.004673
ORF1ab/nsp31206S1206LtCgtTg11B.1.1.1690.018182
ORF1ab/nsp31206S1206ATcgGcg11B.1.1.1700.001247
ORF1ab/nsp31206S1206StcGtcA11B.1.1.1760.000439
ORF1ab/nsp31206S1206LtCgtTg11B.1.1.1980.001468
ORF1ab/nsp31206S1206LtCgtTg11B.1.1.2070.001182
ORF1ab/nsp31206S1206StcGtcT11B.1.1.2080.012195
ORF1ab/nsp31206S1206WtCgtGg11B.1.1.2140.000055
ORF1ab/nsp31206S1206LtCgtTg11B.1.1.2170.003636
ORF1ab/nsp31206S1206TTcgAcg11B.1.1.2220.000204
ORF1ab/nsp31206S1206LtCgtTg11B.1.1.250.000569
ORF1ab/nsp31206S1206StcGtcT11B.1.1.250.000569
ORF1ab/nsp31206S1206LtCgtTg11B.1.1.2630.001558
ORF1ab/nsp31206S1206StcGtcC11B.1.1.2770.000759
ORF1ab/nsp31206S1206StcGtcT11B.1.1.2980.000862
ORF1ab/nsp31206S1206LtCgtTg11B.1.1.2990.012195
ORF1ab/nsp31206S1206LtCgtTg11B.1.1.3000.010753
ORF1ab/nsp31206S1206StcGtcC11B.1.1.3050.003861
ORF1ab/nsp31206S1206delTCG---11B.1.1.3050.003861
ORF1ab/nsp31206S1206LtCgtTg11B.1.1.3080.011765
ORF1ab/nsp31206S1206LtCgtTg11B.1.1.3100.015152
ORF1ab/nsp31206S1206StcGtcA11B.1.1.3170.000412
ORF1ab/nsp31206S1206StcGtcA11B.1.1.3180.000302
ORF1ab/nsp31206S1206LtCgtTg11B.1.1.3480.000796
ORF1ab/nsp31206S1206delTCG---11B.1.1.3480.000796
ORF1ab/nsp31206S1206LtCgtTg11B.1.1.3510.002793
ORF1ab/nsp31206S1206LtCgtTg11B.1.1.3720.000689
ORF1ab/nsp31206S1206LtCgtTg11B.1.1.3740.002375
ORF1ab/nsp31206S1206LtCgtTg11B.1.1.3760.005952
ORF1ab/nsp31206S1206LtCgtTg11B.1.1.3970.002252
ORF1ab/nsp31206S1206LtCgtTg11B.1.1.4090.002833
ORF1ab/nsp31206S1206LtCgtTg11B.1.1.4160.000905
ORF1ab/nsp31206S1206LtCgtTg11B.1.1.4340.000349
ORF1ab/nsp31206S1206ATcgGcg11B.1.1.4640.001473
ORF1ab/nsp31206S1206LtCgtTg11B.1.1.4640.001473
ORF1ab/nsp31206S1206StcGtcT11B.1.1.470.005348
ORF1ab/nsp31206S1206LtCgtTg11B.1.1.510.001718
ORF1ab/nsp31206S1206LtCgtTg11B.1.1.5180.006329
ORF1ab/nsp31206S1206XtCgtAg11B.1.1.5190.00004
ORF1ab/nsp31206S1206delTCG---11B.1.1.5190.00004
ORF1ab/nsp31206S1206LtCgtTg11B.1.1.5230.001563
ORF1ab/nsp31206S1206StcGtcT11B.1.1.80.003584
ORF1ab/nsp31206S1206StcGtcT11B.1.1.890.006061
ORF1ab/nsp31206S1206LtCgtTg11B.1.1.950.019608
ORF1ab/nsp31206S1206StcGtcA11B.1.1.980.018519
ORF1ab/nsp31206S1206PTcgCcg11B.1.1120.005181
ORF1ab/nsp31206S1206StcGtcT11B.1.1570.002985
ORF1ab/nsp31206S1206StcGtcA11B.1.160.190.035714
ORF1ab/nsp31206S1206LtCgtTg11B.1.160.220.006757
ORF1ab/nsp31206S1206LtCgtTg11B.1.160.290.004219
ORF1ab/nsp31206S1206LtCgtTg11B.1.177.190.001431
ORF1ab/nsp31206S1206LtCgtTg11B.1.177.200.001517
ORF1ab/nsp31206S1206StcGtcA11B.1.177.210.000076
ORF1ab/nsp31206S1206LtCgtTg11B.1.177.260.006993
ORF1ab/nsp31206S1206LtCgtTg11B.1.177.320.00135
ORF1ab/nsp31206S1206LtCgtTg11B.1.177.40.000211
ORF1ab/nsp31206S1206StcGtcA11B.1.177.540.000606
ORF1ab/nsp31206S1206StcGtcC11B.1.177.560.000668
ORF1ab/nsp31206S1206delTCG---11B.1.177.620.001192
ORF1ab/nsp31206S1206StcGtcT11B.1.177.630.002703
ORF1ab/nsp31206S1206StcGtcT11B.1.177.730.000566
ORF1ab/nsp31206S1206LtCgtTg11B.1.177.770.000726
ORF1ab/nsp31206S1206StcGtcT11B.1.177.810.000189
ORF1ab/nsp31206S1206StcGtcT11B.1.177.830.001481
ORF1ab/nsp31206S1206LtCgtTg11B.1.177.850.005435
ORF1ab/nsp31206S1206StcGtcA11B.1.1900.01
ORF1ab/nsp31206S1206PTcgCcg11B.1.2210.000071
ORF1ab/nsp31206S1206StcGtcA11B.1.2340.000132
ORF1ab/nsp31206S1206StcGtcA11B.1.2500.014493
ORF1ab/nsp31206S1206delTCG---11B.1.2580.000067
ORF1ab/nsp31206S1206StcGtcA11B.1.2580.000067
ORF1ab/nsp31206S1206LtCgtTg11B.1.258.240.010753
ORF1ab/nsp31206S1206LtCgtTg11B.1.2650.001271
ORF1ab/nsp31206S1206LtCgtTg11B.1.2890.00266
ORF1ab/nsp31206S1206LtCgtTg11B.1.3250.006897
ORF1ab/nsp31206S1206StcGtcT11B.1.3320.003497
ORF1ab/nsp31206S1206StcGtcT11B.1.3360.002439
ORF1ab/nsp31206S1206LtCgtTg11B.1.3460.001311
ORF1ab/nsp31206S1206StcGtcA11B.1.351.50.0006
ORF1ab/nsp31206S1206StcGtcT11B.1.3560.001727
ORF1ab/nsp31206S1206LtCgtTg11B.1.360.000146
ORF1ab/nsp31206S1206StcGtcT11B.1.36.170.000494
ORF1ab/nsp31206S1206StcGtcT11B.1.36.290.000517
ORF1ab/nsp31206S1206LtCgtTg11B.1.36.80.001
ORF1ab/nsp31206S1206StcGtcA11B.1.3690.000285
ORF1ab/nsp31206S1206StcGtcA11B.1.3890.001002
ORF1ab/nsp31206S1206StcGtcT11B.1.3960.000706
ORF1ab/nsp31206S1206LtCgtTg11B.1.4000.000429
ORF1ab/nsp31206S1206LtCgtTg11B.1.4090.000781
ORF1ab/nsp31206S1206LtCgtTg11B.1.4110.003704
ORF1ab/nsp31206S1206LtCgtTg11B.1.4160.001269
ORF1ab/nsp31206S1206StcGtcT11B.1.4270.00005
ORF1ab/nsp31206S1206delTCG---11B.1.4290.000024
ORF1ab/nsp31206S1206LtCgtTg11B.1.438.10.000107
ORF1ab/nsp31206S1206LtCgtTg11B.1.4480.002625
ORF1ab/nsp31206S1206StcGtcA11B.1.4510.008197
ORF1ab/nsp31206S1206PTcgCcg11B.1.4590.004082
ORF1ab/nsp31206S1206StcGtcA11B.1.4590.004082
ORF1ab/nsp31206S1206LtCgtTg11B.1.4680.005714
ORF1ab/nsp31206S1206LtCgtTg11B.1.4700.001404
ORF1ab/nsp31206S1206LtCgtTg11B.1.5210.004975
ORF1ab/nsp31206S1206StcGtcT11B.1.5600.00463
ORF1ab/nsp31206S1206LtCgtTg11B.1.5750.000303
ORF1ab/nsp31206S1206StcGtcT11B.1.5770.000687
ORF1ab/nsp31206S1206LtCgtTg11B.1.5820.000491
ORF1ab/nsp31206S1206LtCgtTg11B.1.5860.010989
ORF1ab/nsp31206S1206LtCgtTg11B.1.5950.000261
ORF1ab/nsp31206S1206LtCgtTg11B.1.6090.000479
ORF1ab/nsp31206S1206TTcgAcg11B.1.6090.000479
ORF1ab/nsp31206S1206delTCG---11B.1.617.20.000004
ORF1ab/nsp31206S1206ETCGGAA11B.1.617.20.000004
ORF1ab/nsp31206S1206ATcgGcg11B.1.6210.000089
ORF1ab/nsp31206S1206LtCgtTg11B.1.621.10.000506
ORF1ab/nsp31206S1206StcGtcA11B.1.6290.013333
ORF1ab/nsp31206S1206delTCG---11B.1.6300.005236
ORF1ab/nsp31206S1206StcGtcT11B.1.6310.003367
ORF1ab/nsp31206S1206PTcgCcg11B.1.6330.041667
ORF1ab/nsp31206S1206LtCgtTg11B.1.6390.021739
ORF1ab/nsp31206S1206LtCgtTg11B.1.910.002075
ORF1ab/nsp31206S1206LtCgtTg11B.1.930.000934
ORF1ab/nsp31206S1206StcGtcA11B.310.003731
ORF1ab/nsp31206S1206LtCgtTg11B.400.000364
ORF1ab/nsp31206S1206LtCgtTg11B.6.60.000889
ORF1ab/nsp31206S1206LtCgtTg11C.10.002392
ORF1ab/nsp31206S1206StcGtcA11C.160.00106
ORF1ab/nsp31206S1206LtCgtTg11C.160.00106
ORF1ab/nsp31206S1206StcGtcT11C.180.002591
ORF1ab/nsp31206S1206StcGtcC11C.20.016129
ORF1ab/nsp31206S1206LtCgtTg11C.300.001727
ORF1ab/nsp31206S1206LTCGCTT11C.350.000774
ORF1ab/nsp31206S1206LtCgtTg11C.360.000911
ORF1ab/nsp31206S1206LtCgtTg11C.36.30.000567
ORF1ab/nsp31206S1206StcGtcT11D.20.000075
ORF1ab/nsp31206S1206LtCgtTg11N.40.004255
ORF1ab/nsp31206S1206LtCgtTg11P.1.150.000232
ORF1ab/nsp31206S1206StcGtcT11P.1.150.000232
ORF1ab/nsp31206S1206StcGtcT11P.1.170.000162
ORF1ab/nsp31206S1206StcGtcA11P.1.90.004808
ORF1ab/nsp31206S1206StcGtcT11P.20.000187
ORF1ab/nsp31206S1206LtCgtTg11Q.20.000613
ORF1ab/nsp31206S1206LtCgtTg11Q.80.000165

CoV-GLUE is still in development. CoV-GLUE was originally developed as part of COG-UK by Josh Singer using the GLUE framework at the MRC-University of Glasgow Centre for Virus Research (CVR). In 2021 it was redeveloped by Richard Orton to scale to the millions of genome sequences available. We acknowledge support from the MRC (MC_UU_12014/12), WT (220977/Z/20/Z) and UKRI G2P (MR/W005611/1). Please contact Richard Orton with any queries: Richard.Orton@glasgow.ac.uk

CoV-GLUE uses sequence data from GISAID. GISAID data provided via this web application is subject to GISAID's Terms and Conditions.