CoV-GLUE | Mutations | Mutation

CoV-GLUE Mutation: ORF = ORF1ab/nsp3 : CodonNum = 1202

Details of the codons used for the mutation across all lineages (CodonProp is the proportion each codon is used for this AA mutation):

ORFCodonNumMutORF1abMutMutTypeRefCodonMutCodonAACountCodonCountCodonPropGenome Position
ORF1ab/nsp31202E1202QE2020QnonsynGaaCaa42042016323-6325
ORF1ab/nsp31202E1202EE2020EsyngaAgaG40040016323-6325
ORF1ab/nsp31202E1202GE2020GnonsyngAagGa21621616323-6325
ORF1ab/nsp31202E1202KE2020KnonsynGaaAaa16616616323-6325
ORF1ab/nsp31202E1202delE2020deldelGAA---13113116323-6325
ORF1ab/nsp31202E1202AE2020AnonsyngAagCa343416323-6325
ORF1ab/nsp31202E1202XE2020XnonsynGaaTaa16140.8756323-6325
ORF1ab/nsp31202E1202XE2020XnonsynGaATaG1610.06256323-6325
ORF1ab/nsp31202E1202XE2020XnonsynGAaTGa1610.06256323-6325
ORF1ab/nsp31202E1202DE2020DnonsyngaAgaT1380.6153856323-6325
ORF1ab/nsp31202E1202DE2020DnonsyngaAgaC1350.3846156323-6325
ORF1ab/nsp31202E1202VE2020VnonsyngAagTa1090.96323-6325
ORF1ab/nsp31202E1202VE2020VnonsyngAAgTC1010.16323-6325
ORF1ab/nsp31202E1202del1E2020del1delgAag-a430.756323-6325
ORF1ab/nsp31202E1202del1E2020del1delGaa-aa410.256323-6325
ORF1ab/nsp31202E1202IE2020InonsynGAaATa1116323-6325
ORF1ab/nsp31202E1202FE2020FnonsynGAATTT1116323-6325

Details of the mutation no within lineages (LineageCodonProp is the proportion the codon is observed at, at this particular site, on each lineage):

ORFCodonNumMutRefCodonMutCodonCodonCountAACountLineageLineageCodonProp
ORF1ab/nsp31202E1202QGaaCaa420420All0.00008
ORF1ab/nsp31202E1202EgaAgaG400400All0.000077
ORF1ab/nsp31202E1202QGaaCaa329329AY.90.022239
ORF1ab/nsp31202E1202EgaAgaG261261AY.250.00157
ORF1ab/nsp31202E1202GgAagGa216216All0.000041
ORF1ab/nsp31202E1202KGaaAaa166166All0.000032
ORF1ab/nsp31202E1202delGAA---131131All0.000025
ORF1ab/nsp31202E1202delGAA---6060B.1.428.30.769231
ORF1ab/nsp31202E1202EgaAgaG5252B.1.617.20.000196
ORF1ab/nsp31202E1202QGaaCaa4949B.10.000449
ORF1ab/nsp31202E1202KGaaAaa4646B.1.2580.003061
ORF1ab/nsp31202E1202GgAagGa4444AY.1030.000273
ORF1ab/nsp31202E1202AgAagCa3434All0.000007
ORF1ab/nsp31202E1202EgaAgaG3232B.1.1.70.000029
ORF1ab/nsp31202E1202GgAagGa2525B.1.2210.001776
ORF1ab/nsp31202E1202QGaaCaa2424B.1.617.20.00009
ORF1ab/nsp31202E1202GgAagGa2222B.1.1.3010.025943
ORF1ab/nsp31202E1202GgAagGa2020B.1.1.3740.047506
ORF1ab/nsp31202E1202GgAagGa1818AY.30.000179
ORF1ab/nsp31202E1202EgaAgaG1818B.1.1.5190.000715
ORF1ab/nsp31202E1202XGaaTaa1416All0.000003
ORF1ab/nsp31202E1202XGaATaG116All0
ORF1ab/nsp31202E1202XGAaTGa116All0
ORF1ab/nsp31202E1202GgAagGa1515B.10.000137
ORF1ab/nsp31202E1202KGaaAaa1414AY.9.10.001172
ORF1ab/nsp31202E1202delGAA---1414B.1.1.70.000013
ORF1ab/nsp31202E1202delGAA---1414B.1.5950.003653
ORF1ab/nsp31202E1202DgaAgaT813All0.000002
ORF1ab/nsp31202E1202DgaAgaC513All0.000001
ORF1ab/nsp31202E1202GgAagGa1313B.1.1.70.000012
ORF1ab/nsp31202E1202KGaaAaa1212B.10.00011
ORF1ab/nsp31202E1202KGaaAaa1212B.1.1.70.000011
ORF1ab/nsp31202E1202VgAagTa910All0.000002
ORF1ab/nsp31202E1202VgAAgTC110All0
ORF1ab/nsp31202E1202GgAagGa1010AY.610.001048
ORF1ab/nsp31202E1202AgAagCa1010B.1.1.70.000009
ORF1ab/nsp31202E1202KGaaAaa99AY.330.000601
ORF1ab/nsp31202E1202delGAA---88B.10.000073
ORF1ab/nsp31202E1202KGaaAaa77AY.40.000011
ORF1ab/nsp31202E1202KGaaAaa77B.1.1770.000092
ORF1ab/nsp31202E1202delGAA---77P.1.10.002224
ORF1ab/nsp31202E1202XGaaTaa66B.10.000055
ORF1ab/nsp31202E1202EgaAgaG55B.10.000046
ORF1ab/nsp31202E1202KGaaAaa55B.1.1.700.001705
ORF1ab/nsp31202E1202GgAagGa55B.1.1600.000156
ORF1ab/nsp31202E1202KGaaAaa55B.1.20.000044
ORF1ab/nsp31202E1202GgAagGa55B.1.617.20.000019
ORF1ab/nsp31202E1202EgaAgaG55B.4.70.050505
ORF1ab/nsp31202E1202KGaaAaa55D.20.000375
ORF1ab/nsp31202E1202del1gAag-a34All0.000001
ORF1ab/nsp31202E1202del1Gaa-aa14All0
ORF1ab/nsp31202E1202AgAagCa44AY.260.000113
ORF1ab/nsp31202E1202VgAagTa44AY.4.20.000087
ORF1ab/nsp31202E1202GgAagGa44AY.440.000024
ORF1ab/nsp31202E1202GgAagGa44B.1.10.000073
ORF1ab/nsp31202E1202DgaAgaT44B.1.2340.000528
ORF1ab/nsp31202E1202QGaaCaa44B.1.5100.105263
ORF1ab/nsp31202E1202AgAagCa44B.1.5260.000094
ORF1ab/nsp31202E1202delGAA---44P.10.000063
ORF1ab/nsp31202E1202GgAagGa33AY.1110.000549
ORF1ab/nsp31202E1202delGAA---33AY.250.000018
ORF1ab/nsp31202E1202EgaAgaG33AY.40.000005
ORF1ab/nsp31202E1202delGAA---33AY.40.000005
ORF1ab/nsp31202E1202GgAagGa33AY.40.000005
ORF1ab/nsp31202E1202AgAagCa33AY.40.000005
ORF1ab/nsp31202E1202KGaaAaa33AY.430.000013
ORF1ab/nsp31202E1202KGaaAaa33B.1.10.000054
ORF1ab/nsp31202E1202GgAagGa33B.1.1.2140.000166
ORF1ab/nsp31202E1202GgAagGa33B.1.177.160.001993
ORF1ab/nsp31202E1202EgaAgaG33B.1.2340.000396
ORF1ab/nsp31202E1202EgaAgaG33B.1.466.20.001174
ORF1ab/nsp31202E1202KGaaAaa22AY.250.000012
ORF1ab/nsp31202E1202QGaaCaa22AY.29.10.000441
ORF1ab/nsp31202E1202GgAagGa22AY.330.000134
ORF1ab/nsp31202E1202EgaAgaG22AY.390.000049
ORF1ab/nsp31202E1202AgAagCa22AY.420.00008
ORF1ab/nsp31202E1202QGaaCaa22AY.430.000009
ORF1ab/nsp31202E1202KGaaAaa22AY.440.000012
ORF1ab/nsp31202E1202QGaaCaa22AY.610.00021
ORF1ab/nsp31202E1202QGaaCaa22AY.75.10.000361
ORF1ab/nsp31202E1202GgAagGa22AY.760.009662
ORF1ab/nsp31202E1202delGAA---22AY.99.20.000184
ORF1ab/nsp31202E1202KGaaAaa22B.1.1.1760.000879
ORF1ab/nsp31202E1202KGaaAaa22B.1.1.5190.000079
ORF1ab/nsp31202E1202DgaAgaC22B.1.1.70.000002
ORF1ab/nsp31202E1202XGAaTGa12B.1.20.000009
ORF1ab/nsp31202E1202XGaaTaa12B.1.20.000009
ORF1ab/nsp31202E1202QGaaCaa22B.1.3490.00143
ORF1ab/nsp31202E1202KGaaAaa22B.1.36.180.00084
ORF1ab/nsp31202E1202EgaAgaG22B.1.4250.005988
ORF1ab/nsp31202E1202AgAagCa22B.1.4250.005988
ORF1ab/nsp31202E1202KGaaAaa22B.1.4290.000047
ORF1ab/nsp31202E1202VgAagTa22B.1.617.20.000008
ORF1ab/nsp31202E1202GgAagGa22P.10.000032
ORF1ab/nsp31202E1202AgAagCa22P.10.000032
ORF1ab/nsp31202E1202XGaaTaa11A0.000387
ORF1ab/nsp31202E1202KGaaAaa11AD.20.000219
ORF1ab/nsp31202E1202FGAATTT11All0
ORF1ab/nsp31202E1202IGAaATa11All0
ORF1ab/nsp31202E1202EgaAgaG11AY.10.000396
ORF1ab/nsp31202E1202QGaaCaa11AY.100.00053
ORF1ab/nsp31202E1202delGAA---11AY.1010.00049
ORF1ab/nsp31202E1202EgaAgaG11AY.1020.000027
ORF1ab/nsp31202E1202EgaAgaG11AY.116.10.000311
ORF1ab/nsp31202E1202EgaAgaG11AY.1180.000063
ORF1ab/nsp31202E1202XGaaTaa11AY.1200.000037
ORF1ab/nsp31202E1202QGaaCaa11AY.130.000161
ORF1ab/nsp31202E1202delGAA---11AY.230.00007
ORF1ab/nsp31202E1202GgAagGa11AY.23.10.000417
ORF1ab/nsp31202E1202DgaAgaC11AY.250.000006
ORF1ab/nsp31202E1202EgaAgaG11AY.260.000028
ORF1ab/nsp31202E1202KGaaAaa11AY.290.000016
ORF1ab/nsp31202E1202delGAA---11AY.30.00001
ORF1ab/nsp31202E1202XGaATaG11AY.300.000396
ORF1ab/nsp31202E1202KGaaAaa11AY.300.000396
ORF1ab/nsp31202E1202delGAA---11AY.330.000067
ORF1ab/nsp31202E1202GgAagGa11AY.370.000316
ORF1ab/nsp31202E1202AgAagCa11AY.390.000025
ORF1ab/nsp31202E1202KGaaAaa11AY.390.000025
ORF1ab/nsp31202E1202DgaAgaT11AY.40.000002
ORF1ab/nsp31202E1202XGaaTaa11AY.40.000002
ORF1ab/nsp31202E1202GgAagGa11AY.4.20.000022
ORF1ab/nsp31202E1202GgAagGa11AY.430.000004
ORF1ab/nsp31202E1202DgaAgaT11AY.440.000006
ORF1ab/nsp31202E1202delGAA---11AY.440.000006
ORF1ab/nsp31202E1202FGAATTT11AY.440.000006
ORF1ab/nsp31202E1202AgAagCa11AY.46.10.001027
ORF1ab/nsp31202E1202KGaaAaa11AY.50.000021
ORF1ab/nsp31202E1202KGaaAaa11AY.60.000041
ORF1ab/nsp31202E1202QGaaCaa11AY.650.000533
ORF1ab/nsp31202E1202delGAA---11AY.660.00107
ORF1ab/nsp31202E1202EgaAgaG11AY.670.000464
ORF1ab/nsp31202E1202KGaaAaa11AY.740.000116
ORF1ab/nsp31202E1202EgaAgaG11AY.750.000056
ORF1ab/nsp31202E1202delGAA---11AY.850.000427
ORF1ab/nsp31202E1202AgAagCa11AY.9.10.000084
ORF1ab/nsp31202E1202VgAAgTC11AY.9.20.000037
ORF1ab/nsp31202E1202delGAA---11AY.990.001049
ORF1ab/nsp31202E1202XGaaTaa11B0.000128
ORF1ab/nsp31202E1202KGaaAaa11B0.000128
ORF1ab/nsp31202E1202VgAagTa11B.10.000009
ORF1ab/nsp31202E1202AgAagCa11B.10.000009
ORF1ab/nsp31202E1202DgaAgaC11B.10.000009
ORF1ab/nsp31202E1202del1gAag-a11B.10.000009
ORF1ab/nsp31202E1202EgaAgaG11B.1.10.000018
ORF1ab/nsp31202E1202delGAA---11B.1.1.2620.015152
ORF1ab/nsp31202E1202del1Gaa-aa11B.1.1.3150.008475
ORF1ab/nsp31202E1202GgAagGa11B.1.1.3440.010753
ORF1ab/nsp31202E1202delGAA---11B.1.1.3480.000796
ORF1ab/nsp31202E1202KGaaAaa11B.1.1.390.00051
ORF1ab/nsp31202E1202GgAagGa11B.1.1.4090.002833
ORF1ab/nsp31202E1202delGAA---11B.1.1.5190.00004
ORF1ab/nsp31202E1202IGAaATa11B.1.1.5190.00004
ORF1ab/nsp31202E1202VgAagTa11B.1.1.70.000001
ORF1ab/nsp31202E1202QGaaCaa11B.1.1.70.000001
ORF1ab/nsp31202E1202del1gAag-a11B.1.1.70.000001
ORF1ab/nsp31202E1202KGaaAaa11B.1.1180.006711
ORF1ab/nsp31202E1202XGaaTaa11B.1.1600.000031
ORF1ab/nsp31202E1202KGaaAaa11B.1.1600.000031
ORF1ab/nsp31202E1202GgAagGa11B.1.1770.000013
ORF1ab/nsp31202E1202delGAA---11B.1.1770.000013
ORF1ab/nsp31202E1202GgAagGa11B.1.177.230.003236
ORF1ab/nsp31202E1202delGAA---11B.1.177.620.001192
ORF1ab/nsp31202E1202EgaAgaG11B.1.20.000009
ORF1ab/nsp31202E1202AgAagCa11B.1.20.000009
ORF1ab/nsp31202E1202KGaaAaa11B.1.2430.00007
ORF1ab/nsp31202E1202del1gAag-a11B.1.2430.00007
ORF1ab/nsp31202E1202DgaAgaT11B.1.2580.000067
ORF1ab/nsp31202E1202KGaaAaa11B.1.3060.005714
ORF1ab/nsp31202E1202AgAagCa11B.1.3400.004292
ORF1ab/nsp31202E1202KGaaAaa11B.1.351.30.000876
ORF1ab/nsp31202E1202KGaaAaa11B.1.360.000146
ORF1ab/nsp31202E1202GgAagGa11B.1.36.180.00042
ORF1ab/nsp31202E1202KGaaAaa11B.1.36.210.00216
ORF1ab/nsp31202E1202KGaaAaa11B.1.36.230.016393
ORF1ab/nsp31202E1202GgAagGa11B.1.3690.000285
ORF1ab/nsp31202E1202EgaAgaG11B.1.3980.002976
ORF1ab/nsp31202E1202delGAA---11B.1.4290.000024
ORF1ab/nsp31202E1202EgaAgaG11B.1.438.10.000107
ORF1ab/nsp31202E1202KGaaAaa11B.1.438.10.000107
ORF1ab/nsp31202E1202KGaaAaa11B.1.4530.003236
ORF1ab/nsp31202E1202KGaaAaa11B.1.5250.000113
ORF1ab/nsp31202E1202GgAagGa11B.1.5380.008065
ORF1ab/nsp31202E1202EgaAgaG11B.1.5520.015152
ORF1ab/nsp31202E1202KGaaAaa11B.1.5760.000907
ORF1ab/nsp31202E1202KGaaAaa11B.1.5820.000491
ORF1ab/nsp31202E1202KGaaAaa11B.1.5950.000261
ORF1ab/nsp31202E1202EgaAgaG11B.1.5960.000087
ORF1ab/nsp31202E1202KGaaAaa11B.1.617.20.000004
ORF1ab/nsp31202E1202delGAA---11B.1.617.20.000004
ORF1ab/nsp31202E1202XGaaTaa11B.1.6230.000536
ORF1ab/nsp31202E1202delGAA---11B.1.6300.005236
ORF1ab/nsp31202E1202XGaaTaa11B.60.00091
ORF1ab/nsp31202E1202KGaaAaa11C.260.007353
ORF1ab/nsp31202E1202KGaaAaa11C.350.000774
ORF1ab/nsp31202E1202DgaAgaT11C.350.000774
ORF1ab/nsp31202E1202VgAagTa11D.20.000075
ORF1ab/nsp31202E1202EgaAgaG11N.30.005814
ORF1ab/nsp31202E1202DgaAgaC11P.10.000016
ORF1ab/nsp31202E1202GgAagGa11P.20.000187
ORF1ab/nsp31202E1202GgAagGa11P.40.003802
ORF1ab/nsp31202E1202AgAagCa11Q.80.000165