CoV-GLUE | Mutations | Mutation

CoV-GLUE Mutation: ORF = ORF1ab/nsp3 : CodonNum = 1200 & Codon = cTa

Details of the codons used for the mutation across all lineages (CodonProp is the proportion each codon is used for this AA mutation):

ORFCodonNumMutORF1abMutMutTypeRefCodonMutCodonAACountCodonCountCodonPropGenome Position
ORF1ab/nsp31200P1200LP2018LnonsyncCacTa310629760.9581456317-6319

Details of the mutation no within lineages (LineageCodonProp is the proportion the codon is observed at, at this particular site, on each lineage):

ORFCodonNumMutRefCodonMutCodonCodonCountAACountLineageLineageCodonProp
ORF1ab/nsp31200P1200LcCacTa29763106All0.000569
ORF1ab/nsp31200P1200LcCacTa854877B.1.1.70.000765
ORF1ab/nsp31200P1200LcCacTa431431AY.40.000671
ORF1ab/nsp31200P1200LcCacTa323323B.1.1770.004253
ORF1ab/nsp31200P1200LcCacTa178178B.1.10.003229
ORF1ab/nsp31200P1200LcCacTa133133B.1.3510.003954
ORF1ab/nsp31200P1200LcCacTa103103AY.440.000627
ORF1ab/nsp31200P1200LcCacTa7878AY.1190.002754
ORF1ab/nsp31200P1200LcCacTa7172AY.250.000427
ORF1ab/nsp31200P1200LcCacTa7070B.1.617.20.000264
ORF1ab/nsp31200P1200LcCacTa6262AY.30.000617
ORF1ab/nsp31200P1200LcCacTa5656D.50.278607
ORF1ab/nsp31200P1200LcCacTa5252B.1.20.000458
ORF1ab/nsp31200P1200LcCacTa4949AY.430.000217
ORF1ab/nsp31200P1200LcCacTa4646B.10.000421
ORF1ab/nsp31200P1200LcCacTa4141AY.1030.000255
ORF1ab/nsp31200P1200LcCacTa3939AY.50.000805
ORF1ab/nsp31200P1200LcCacTa3737AY.290.000584
ORF1ab/nsp31200P1200LcCacTa3232B.1.4290.000753
ORF1ab/nsp31200P1200LcCacTa2424B.1.3960.016937
ORF1ab/nsp31200P1200LcCacTa1919AY.1020.000504
ORF1ab/nsp31200P1200LcCacTa1919B.1.4000.008151
ORF1ab/nsp31200P1200LcCacTa1717B.1.5260.0004
ORF1ab/nsp31200P1200LcCacTa1313B.1.177.770.009441
ORF1ab/nsp31200P1200LcCacTa1010AY.390.000247
ORF1ab/nsp31200P1200LcCacTa1010AY.9.20.000367
ORF1ab/nsp31200P1200LcCacTa1010P.20.001866
ORF1ab/nsp31200P1200LcCacTa88AY.100.00424
ORF1ab/nsp31200P1200LcCacTa77AY.99.20.000645
ORF1ab/nsp31200P1200LcCacTa77B.1.1600.000218
ORF1ab/nsp31200P1200LcCacTa77B.1.2210.000497
ORF1ab/nsp31200P1200LcCacTa77B.1.6090.003356
ORF1ab/nsp31200P1200LcCacTa66AY.360.000889
ORF1ab/nsp31200P1200LcCacTa55AY.1200.000186
ORF1ab/nsp31200P1200LcCacTa55AY.260.000142
ORF1ab/nsp31200P1200LcCacTa55AY.750.00028
ORF1ab/nsp31200P1200LcCacTa44AY.230.000279
ORF1ab/nsp31200P1200LcCacTa44AY.4.20.000087
ORF1ab/nsp31200P1200LcCacTa44AY.4.50.00043
ORF1ab/nsp31200P1200LcCacTa44AY.420.000161
ORF1ab/nsp31200P1200LcCacTa44AY.460.000416
ORF1ab/nsp31200P1200LcCacTa44AY.470.000124
ORF1ab/nsp31200P1200LcCacTa44B.1.1.5190.000159
ORF1ab/nsp31200P1200LcCacTa44D.20.0003
ORF1ab/nsp31200P1200LcCacTa33AY.34.10.00153
ORF1ab/nsp31200P1200LcCacTa33AY.400.002893
ORF1ab/nsp31200P1200LcCacTa33B.1.1.2410.006211
ORF1ab/nsp31200P1200LcCacTa33B.1.177.320.004049
ORF1ab/nsp31200P1200LcCacTa33B.1.258.170.000312
ORF1ab/nsp31200P1200LcCacTa33B.1.5650.002431
ORF1ab/nsp31200P1200LcCacTa33C.370.000348
ORF1ab/nsp31200P1200LcCacTa22AL.10.025974
ORF1ab/nsp31200P1200LcCacTa22AY.140.000176
ORF1ab/nsp31200P1200LcCacTa22AY.200.000078
ORF1ab/nsp31200P1200LcCacTa22AY.270.000129
ORF1ab/nsp31200P1200LcCacTa22AY.39.10.000079
ORF1ab/nsp31200P1200LcCacTa22AY.450.000243
ORF1ab/nsp31200P1200LcCacTa22AY.610.00021
ORF1ab/nsp31200P1200LcCacTa22AY.690.000373
ORF1ab/nsp31200P1200LcCacTa22AY.850.000854
ORF1ab/nsp31200P1200LcCacTa22AY.950.001522
ORF1ab/nsp31200P1200LcCacTa22B0.000256
ORF1ab/nsp31200P1200LcCacTa12B.1.177.60.000977
ORF1ab/nsp31200P1200LcCacTa22B.1.2430.000139
ORF1ab/nsp31200P1200LcCacTa22B.1.36.290.001035
ORF1ab/nsp31200P1200LcCacTa22B.1.4090.001563
ORF1ab/nsp31200P1200LcCacTa22B.1.4270.000101
ORF1ab/nsp31200P1200LcCacTa22B.1.6210.000177
ORF1ab/nsp31200P1200LcCacTa22Q.80.00033
ORF1ab/nsp31200P1200LcCacTa11AE.50.018519
ORF1ab/nsp31200P1200LcCacTa11AW.10.003049
ORF1ab/nsp31200P1200LcCacTa11AY.1060.000335
ORF1ab/nsp31200P1200LcCacTa11AY.1100.000113
ORF1ab/nsp31200P1200LcCacTa11AY.1110.000183
ORF1ab/nsp31200P1200LcCacTa11AY.1160.000287
ORF1ab/nsp31200P1200LcCacTa11AY.116.10.000311
ORF1ab/nsp31200P1200LcCacTa11AY.120.20.001285
ORF1ab/nsp31200P1200LcCacTa11AY.130.000161
ORF1ab/nsp31200P1200LcCacTa11AY.220.002092
ORF1ab/nsp31200P1200LcCacTa11AY.29.10.000221
ORF1ab/nsp31200P1200LcCacTa11AY.320.000532
ORF1ab/nsp31200P1200LcCacTa11AY.330.000067
ORF1ab/nsp31200P1200LcCacTa11AY.340.000097
ORF1ab/nsp31200P1200LcCacTa11AY.540.000095
ORF1ab/nsp31200P1200LcCacTa11AY.630.000387
ORF1ab/nsp31200P1200LcCacTa11AY.7.10.000113
ORF1ab/nsp31200P1200LcCacTa11AY.710.000475
ORF1ab/nsp31200P1200LcCacTa11AY.820.001357
ORF1ab/nsp31200P1200LcCacTa11AY.9.10.000084
ORF1ab/nsp31200P1200LcCacTa11AY.980.000079
ORF1ab/nsp31200P1200LcCacTa11B.1.1.1740.003378
ORF1ab/nsp31200P1200LcCacTa11B.1.1.1860.003436
ORF1ab/nsp31200P1200LcCacTa11B.1.1.1890.001513
ORF1ab/nsp31200P1200LcCacTa11B.1.1.2140.000055
ORF1ab/nsp31200P1200LcCacTa11B.1.1.2270.004348
ORF1ab/nsp31200P1200LcCacTa11B.1.1.2620.015152
ORF1ab/nsp31200P1200LcCacTa11B.1.1.280.000311
ORF1ab/nsp31200P1200LcCacTa11B.1.1.2940.001266
ORF1ab/nsp31200P1200LcCacTa11B.1.1.3160.000925
ORF1ab/nsp31200P1200LcCacTa11B.1.1.80.003584
ORF1ab/nsp31200P1200LcCacTa11B.1.177.150.000631
ORF1ab/nsp31200P1200LcCacTa11B.1.177.210.000076
ORF1ab/nsp31200P1200LcCacTa11B.1.177.440.000519
ORF1ab/nsp31200P1200LcCacTa11B.1.177.450.000381
ORF1ab/nsp31200P1200LcCacTa11B.1.177.530.002392
ORF1ab/nsp31200P1200LcCacTa11B.1.2320.000537
ORF1ab/nsp31200P1200LcCacTa11B.1.2340.000132
ORF1ab/nsp31200P1200LcCacTa11B.1.351.30.000876
ORF1ab/nsp31200P1200LcCacTa11B.1.36.170.000494
ORF1ab/nsp31200P1200LcCacTa11B.1.3670.000792
ORF1ab/nsp31200P1200LcCacTa11B.1.4020.009804
ORF1ab/nsp31200P1200LcCacTa11B.1.4590.004082
ORF1ab/nsp31200P1200LcCacTa11B.1.5210.004975
ORF1ab/nsp31200P1200LcCacTa11B.1.5250.000113
ORF1ab/nsp31200P1200LcCacTa11B.1.5950.000261
ORF1ab/nsp31200P1200LcCacTa11B.1.5960.000087
ORF1ab/nsp31200P1200LcCacTa11B.1.617.10.000129
ORF1ab/nsp31200P1200LcCacTa11B.1.6280.000352
ORF1ab/nsp31200P1200LcCacTa11B.390.002331
ORF1ab/nsp31200P1200LcCacTa11C.160.00106
ORF1ab/nsp31200P1200LcCacTa11C.350.000774
ORF1ab/nsp31200P1200LcCacTa11L.30.003546
ORF1ab/nsp31200P1200LcCacTa11P.30.001595