CoV-GLUE | Mutations | Mutation

CoV-GLUE Mutation: ORF = ORF1ab/nsp3 : CodonNum = 1200

Details of the codons used for the mutation across all lineages (CodonProp is the proportion each codon is used for this AA mutation):

ORFCodonNumMutORF1abMutMutTypeRefCodonMutCodonAACountCodonCountCodonPropGenome Position
ORF1ab/nsp31200P1200PP2018PsynccAccG1138421137320.9990346317-6319
ORF1ab/nsp31200P1200PP2018PsynccAccT113842940.0008257066317-6319
ORF1ab/nsp31200P1200PP2018PsynccAccC113842160.0001405466317-6319
ORF1ab/nsp31200P1200SP2018SnonsynCcaTca614156910.9267226317-6319
ORF1ab/nsp31200P1200SP2018SnonsynCcATcG61414500.0732786317-6319
ORF1ab/nsp31200P1200LP2018LnonsyncCacTa310629760.9581456317-6319
ORF1ab/nsp31200P1200LP2018LnonsyncCAcTG3106810.02607866317-6319
ORF1ab/nsp31200P1200LP2018LnonsynCCaTTa3106490.01577596317-6319
ORF1ab/nsp31200P1200TP2018TnonsynCcaAca1781750.9831466317-6319
ORF1ab/nsp31200P1200QP2018QnonsyncCacAa1781650.9269666317-6319
ORF1ab/nsp31200P1200QP2018QnonsyncCAcAG178130.07303376317-6319
ORF1ab/nsp31200P1200TP2018TnonsynCcAAcT17820.0112366317-6319
ORF1ab/nsp31200P1200TP2018TnonsynCcAAcC17810.005617986317-6319
ORF1ab/nsp31200P1200delP2018deldelCCA---292916317-6319
ORF1ab/nsp31200P1200AP2018AnonsynCcaGca7716317-6319
ORF1ab/nsp31200P1200del1P2018del1delccAcc-2216317-6319
ORF1ab/nsp31200P1200RP2018RnonsyncCacGa1116317-6319
ORF1ab/nsp31200P1200VP2018VnonsynCCAGTC1116317-6319

Details of the mutation no within lineages (LineageCodonProp is the proportion the codon is observed at, at this particular site, on each lineage):

ORFCodonNumMutRefCodonMutCodonCodonCountAACountLineageLineageCodonProp
ORF1ab/nsp31200P1200PccAccG113732113842All0.021753
ORF1ab/nsp31200P1200PccAccT94113842All0.000018
ORF1ab/nsp31200P1200PccAccC16113842All0.000003
ORF1ab/nsp31200P1200PccAccG6239962457P.10.983033
ORF1ab/nsp31200P1200PccAccT5862457P.10.000914
ORF1ab/nsp31200P1200PccAccG2078920791P.1.140.993738
ORF1ab/nsp31200P1200PccAccT220791P.1.140.000096
ORF1ab/nsp31200P1200SCcaTca56916141All0.001088
ORF1ab/nsp31200P1200SCcATcG4506141All0.000086
ORF1ab/nsp31200P1200PccAccG61206122P.1.170.989971
ORF1ab/nsp31200P1200PccAccC16122P.1.170.000162
ORF1ab/nsp31200P1200PccAccT16122P.1.170.000162
ORF1ab/nsp31200P1200PccAccG41664166P.1.150.967937
ORF1ab/nsp31200P1200PccAccG36893689P.1.100.994072
ORF1ab/nsp31200P1200PccAccG31103110P.1.70.992976
ORF1ab/nsp31200P1200LcCacTa29763106All0.000569
ORF1ab/nsp31200P1200LcCAcTG813106All0.000015
ORF1ab/nsp31200P1200LCCaTTa493106All0.000009
ORF1ab/nsp31200P1200PccAccG29802980P.1.10.946633
ORF1ab/nsp31200P1200PccAccG24182418P.1.160.904602
ORF1ab/nsp31200P1200PccAccG19051905P.1.120.922072
ORF1ab/nsp31200P1200SCcaTca17511751B.1.1.70.001568
ORF1ab/nsp31200P1200PccAccG11391139P.1.17.10.9965
ORF1ab/nsp31200P1200PccAccG10231023P.1.40.999023
ORF1ab/nsp31200P1200SCcaTca988988B.1.177.60.964844
ORF1ab/nsp31200P1200LcCacTa854877B.1.1.70.000765
ORF1ab/nsp31200P1200LCCaTTa23877B.1.1.70.000021
ORF1ab/nsp31200P1200PccAccG858861P.1.20.991908
ORF1ab/nsp31200P1200PccAccT3861P.1.20.003468
ORF1ab/nsp31200P1200PccAccG753753P.1.130.67655
ORF1ab/nsp31200P1200PccAccG513513P.1.60.998054
ORF1ab/nsp31200P1200LcCacTa431431AY.40.000671
ORF1ab/nsp31200P1200PccAccG414424B.1.1.70.000371
ORF1ab/nsp31200P1200PccAccC7424B.1.1.70.000006
ORF1ab/nsp31200P1200PccAccT3424B.1.1.70.000003
ORF1ab/nsp31200P1200SCcaTca350350AY.40.000545
ORF1ab/nsp31200P1200PccAccG322323B.1.1.280.100218
ORF1ab/nsp31200P1200PccAccT1323B.1.1.280.000311
ORF1ab/nsp31200P1200LcCacTa323323B.1.1770.004253
ORF1ab/nsp31200P1200SCcaTca323323B.1.36.160.460114
ORF1ab/nsp31200P1200SCcATcG270270P.1.130.242588
ORF1ab/nsp31200P1200SCcaTca221221AY.440.001345
ORF1ab/nsp31200P1200SCcaTca216216B.1.617.20.000813
ORF1ab/nsp31200P1200PccAccG209209P.1.81
ORF1ab/nsp31200P1200PccAccG207207P.1.90.995192
ORF1ab/nsp31200P1200TCcaAca175178All0.000033
ORF1ab/nsp31200P1200QcCacAa165178All0.000032
ORF1ab/nsp31200P1200QcCAcAG13178All0.000002
ORF1ab/nsp31200P1200TCcAAcT2178All0
ORF1ab/nsp31200P1200TCcAAcC1178All0
ORF1ab/nsp31200P1200LcCacTa178178B.1.10.003229
ORF1ab/nsp31200P1200QcCacAa136136B.1.466.10.978417
ORF1ab/nsp31200P1200LcCacTa133133B.1.3510.003954
ORF1ab/nsp31200P1200SCcaTca128128B.1.20.001127
ORF1ab/nsp31200P1200SCcaTca127127AY.430.000563
ORF1ab/nsp31200P1200SCcaTca124124AY.420.004989
ORF1ab/nsp31200P1200PccAccG108108P.1.10.10.878049
ORF1ab/nsp31200P1200LcCacTa103103AY.440.000627
ORF1ab/nsp31200P1200SCcATcG9898P.10.001544
ORF1ab/nsp31200P1200PccAccG9898P.1.111
ORF1ab/nsp31200P1200PccAccG8991B.10.000815
ORF1ab/nsp31200P1200PccAccC191B.10.000009
ORF1ab/nsp31200P1200PccAccT191B.10.000009
ORF1ab/nsp31200P1200SCcaTca8282AY.250.000493
ORF1ab/nsp31200P1200SCcaTca8282B.1.1.1410.16499
ORF1ab/nsp31200P1200PccAccG7979B.1.10.001433
ORF1ab/nsp31200P1200LcCacTa7878AY.1190.002754
ORF1ab/nsp31200P1200SCcaTca7676AY.1030.000472
ORF1ab/nsp31200P1200SCcaTca7676AY.600.071295
ORF1ab/nsp31200P1200LcCacTa7172AY.250.000427
ORF1ab/nsp31200P1200LCCaTTa172AY.250.000006
ORF1ab/nsp31200P1200LcCacTa7070B.1.617.20.000264
ORF1ab/nsp31200P1200SCcaTca6868AY.30.000676
ORF1ab/nsp31200P1200SCcaTca6363B.1.1770.00083
ORF1ab/nsp31200P1200LcCacTa6262AY.30.000617
ORF1ab/nsp31200P1200SCcaTca5959AY.4.20.00128
ORF1ab/nsp31200P1200LcCacTa5656D.50.278607
ORF1ab/nsp31200P1200SCcATcG5656P.1.150.013011
ORF1ab/nsp31200P1200LcCacTa5252B.1.20.000458
ORF1ab/nsp31200P1200SCcaTca5050B.1.177.160.033223
ORF1ab/nsp31200P1200LcCacTa4949AY.430.000217
ORF1ab/nsp31200P1200PccAccG4848C.370.005571
ORF1ab/nsp31200P1200LcCacTa4646B.10.000421
ORF1ab/nsp31200P1200SCcaTca4545B.10.000412
ORF1ab/nsp31200P1200LcCacTa4141AY.1030.000255
ORF1ab/nsp31200P1200SCcaTca4040B.1.2340.005278
ORF1ab/nsp31200P1200LcCacTa3939AY.50.000805
ORF1ab/nsp31200P1200TCcaAca3939B.1.1.70.000035
ORF1ab/nsp31200P1200LcCAcTG3939P.10.000614
ORF1ab/nsp31200P1200LcCacTa3737AY.290.000584
ORF1ab/nsp31200P1200SCcaTca3737B.1.10.000671
ORF1ab/nsp31200P1200SCcaTca3535B.1.4290.000824
ORF1ab/nsp31200P1200SCcaTca3434AY.50.000702
ORF1ab/nsp31200P1200TCcaAca3232AY.390.000791
ORF1ab/nsp31200P1200LcCacTa3232B.1.4290.000753
ORF1ab/nsp31200P1200SCcaTca3030AY.260.000849
ORF1ab/nsp31200P1200delCCA---2929All0.000006
ORF1ab/nsp31200P1200SCcaTca2929AY.1200.001078
ORF1ab/nsp31200P1200SCcaTca2929B.1.2210.00206
ORF1ab/nsp31200P1200LcCAcTG2929P.1.10.009212
ORF1ab/nsp31200P1200PccAccG2929P.1.31
ORF1ab/nsp31200P1200SCcaTca2727AY.390.000667
ORF1ab/nsp31200P1200LcCacTa2424B.1.3960.016937
ORF1ab/nsp31200P1200PccAccG2424P.1.10.21
ORF1ab/nsp31200P1200PccAccG2223AY.440.000134
ORF1ab/nsp31200P1200PccAccC123AY.440.000006
ORF1ab/nsp31200P1200LCCaTTa2323B.1.36.160.032764
ORF1ab/nsp31200P1200PccAccG1921B.1.617.20.000072
ORF1ab/nsp31200P1200PccAccC121B.1.617.20.000004
ORF1ab/nsp31200P1200PccAccT121B.1.617.20.000004
ORF1ab/nsp31200P1200SCcaTca2121B.1.6300.109948
ORF1ab/nsp31200P1200LcCacTa1919AY.1020.000504
ORF1ab/nsp31200P1200SCcaTca1919AY.200.000738
ORF1ab/nsp31200P1200LcCacTa1919B.1.4000.008151
ORF1ab/nsp31200P1200SCcaTca1818B.1.5260.000423
ORF1ab/nsp31200P1200SCcATcG1818P.1.140.00086
ORF1ab/nsp31200P1200SCcaTca1717AY.1020.000451
ORF1ab/nsp31200P1200SCcaTca1717B.1.5250.001924
ORF1ab/nsp31200P1200LcCacTa1717B.1.5260.0004
ORF1ab/nsp31200P1200SCcaTca1616AY.290.000252
ORF1ab/nsp31200P1200SCcaTca1616AY.330.001068
ORF1ab/nsp31200P1200PccAccG1616B.1.1.5280.076923
ORF1ab/nsp31200P1200SCcaTca1515B.1.2580.000998
ORF1ab/nsp31200P1200TCcaAca1414AY.4.20.000304
ORF1ab/nsp31200P1200SCcaTca1414B.1.1600.000437
ORF1ab/nsp31200P1200SCcaTca1313AY.300.005144
ORF1ab/nsp31200P1200LcCacTa1313B.1.177.770.009441
ORF1ab/nsp31200P1200SCcaTca1313B.1.3510.000386
ORF1ab/nsp31200P1200PccAccG1313P.1.51
ORF1ab/nsp31200P1200SCcaTca1212AY.39.10.000475
ORF1ab/nsp31200P1200PccAccG712B.1.6210.00062
ORF1ab/nsp31200P1200PccAccT512B.1.6210.000443
ORF1ab/nsp31200P1200QcCAcAG1212P.10.000189
ORF1ab/nsp31200P1200SCcaTca1111AY.1000.000506
ORF1ab/nsp31200P1200SCcaTca1111AY.1040.021825
ORF1ab/nsp31200P1200PccAccG1111AY.430.000049
ORF1ab/nsp31200P1200QcCacAa1111B.10.000101
ORF1ab/nsp31200P1200PccAccG1111C.37.10.028796
ORF1ab/nsp31200P1200LcCacTa1010AY.390.000247
ORF1ab/nsp31200P1200SCcaTca1010AY.7.10.001127
ORF1ab/nsp31200P1200LcCacTa1010AY.9.20.000367
ORF1ab/nsp31200P1200SCcaTca1010B.1.3770.045662
ORF1ab/nsp31200P1200LcCacTa1010P.20.001866
ORF1ab/nsp31200P1200SCcaTca99AY.3.10.000767
ORF1ab/nsp31200P1200SCcaTca99AY.610.000943
ORF1ab/nsp31200P1200SCcaTca99B.1.177.320.012146
ORF1ab/nsp31200P1200TCcaAca99B.1.2980.019027
ORF1ab/nsp31200P1200SCcaTca99B.1.4270.000454
ORF1ab/nsp31200P1200PccAccG99B.1.4290.000212
ORF1ab/nsp31200P1200SCcaTca99C.370.001045
ORF1ab/nsp31200P1200LcCacTa88AY.100.00424
ORF1ab/nsp31200P1200SCcaTca88AY.1070.003728
ORF1ab/nsp31200P1200TCcaAca88AY.40.000012
ORF1ab/nsp31200P1200SCcaTca88AY.60.000329
ORF1ab/nsp31200P1200SCcaTca88B.1.2430.000557
ORF1ab/nsp31200P1200SCcaTca88B.1.5960.000697
ORF1ab/nsp31200P1200TCcaAca88B.1.617.20.00003
ORF1ab/nsp31200P1200SCcaTca88B.1.9.40.04908
ORF1ab/nsp31200P1200PccAccG78P.20.001306
ORF1ab/nsp31200P1200PccAccT18P.20.000187
ORF1ab/nsp31200P1200PccAccG77A.2.50.003493
ORF1ab/nsp31200P1200ACcaGca77All0.000001
ORF1ab/nsp31200P1200PccAccG67AY.250.000036
ORF1ab/nsp31200P1200PccAccT17AY.250.000006
ORF1ab/nsp31200P1200PccAccG57AY.40.000008
ORF1ab/nsp31200P1200PccAccT17AY.40.000002
ORF1ab/nsp31200P1200PccAccC17AY.40.000002
ORF1ab/nsp31200P1200SCcaTca77AY.9.20.000257
ORF1ab/nsp31200P1200LcCacTa77AY.99.20.000645
ORF1ab/nsp31200P1200TCcaAca77B.10.000064
ORF1ab/nsp31200P1200LcCacTa77B.1.1600.000218
ORF1ab/nsp31200P1200SCcaTca77B.1.177.120.001062
ORF1ab/nsp31200P1200LcCacTa77B.1.2210.000497
ORF1ab/nsp31200P1200LcCacTa77B.1.6090.003356
ORF1ab/nsp31200P1200SCcaTca77D.20.000525
ORF1ab/nsp31200P1200SCcaTca66AY.110.008032
ORF1ab/nsp31200P1200SCcaTca66AY.1190.000212
ORF1ab/nsp31200P1200TCcaAca66AY.140.000528
ORF1ab/nsp31200P1200PccAccT56AY.200.000194
ORF1ab/nsp31200P1200PccAccG16AY.200.000039
ORF1ab/nsp31200P1200LcCacTa66AY.360.000889
ORF1ab/nsp31200P1200SCcaTca66AY.4.2.10.000894
ORF1ab/nsp31200P1200SCcaTca66AY.450.00073
ORF1ab/nsp31200P1200SCcaTca66B.1.1.390.003058
ORF1ab/nsp31200P1200SCcaTca66B.1.1.5190.000238
ORF1ab/nsp31200P1200LcCAcTG66P.1.170.000971
ORF1ab/nsp31200P1200LcCacTa55AY.1200.000186
ORF1ab/nsp31200P1200delCCA---55AY.250.00003
ORF1ab/nsp31200P1200LcCacTa55AY.260.000142
ORF1ab/nsp31200P1200SCcaTca55AY.460.00052
ORF1ab/nsp31200P1200SCcaTca55AY.750.00028
ORF1ab/nsp31200P1200LcCacTa55AY.750.00028
ORF1ab/nsp31200P1200LcCAcTG55P.1.140.000239
ORF1ab/nsp31200P1200SCcaTca55R.10.00045
ORF1ab/nsp31200P1200SCcaTca44AY.1170.000338
ORF1ab/nsp31200P1200LcCacTa44AY.230.000279
ORF1ab/nsp31200P1200TCcaAca44AY.250.000024
ORF1ab/nsp31200P1200PccAccG44AY.390.000099
ORF1ab/nsp31200P1200LcCacTa44AY.4.20.000087
ORF1ab/nsp31200P1200LcCacTa44AY.4.50.00043
ORF1ab/nsp31200P1200LcCacTa44AY.420.000161
ORF1ab/nsp31200P1200QcCacAa44AY.430.000018
ORF1ab/nsp31200P1200TCcaAca44AY.440.000024
ORF1ab/nsp31200P1200LcCacTa44AY.460.000416
ORF1ab/nsp31200P1200LcCacTa44AY.470.000124
ORF1ab/nsp31200P1200SCcaTca44AY.540.000381
ORF1ab/nsp31200P1200PccAccG44B0.000511
ORF1ab/nsp31200P1200PccAccG44B.1.1.4850.066667
ORF1ab/nsp31200P1200LcCacTa44B.1.1.5190.000159
ORF1ab/nsp31200P1200SCcaTca44B.1.1.700.001364
ORF1ab/nsp31200P1200delCCA---44B.1.1770.000053
ORF1ab/nsp31200P1200SCcaTca44B.1.177.810.000757
ORF1ab/nsp31200P1200TCcaAca34B.1.20.000026
ORF1ab/nsp31200P1200TCcAAcC14B.1.20.000009
ORF1ab/nsp31200P1200PccAccG44B.1.3110.001098
ORF1ab/nsp31200P1200PccAccC44B.1.3960.002823
ORF1ab/nsp31200P1200SCcaTca44B.1.5670.013333
ORF1ab/nsp31200P1200LcCacTa44D.20.0003
ORF1ab/nsp31200P1200SCcaTca44P.20.000747
ORF1ab/nsp31200P1200SCcaTca33A.10.000846
ORF1ab/nsp31200P1200TCcaAca33AY.1000.000138
ORF1ab/nsp31200P1200PccAccG33AY.1020.00008
ORF1ab/nsp31200P1200SCcaTca33AY.1050.001929
ORF1ab/nsp31200P1200SCcaTca33AY.1100.000338
ORF1ab/nsp31200P1200SCcaTca33AY.160.001139
ORF1ab/nsp31200P1200PccAccG33AY.230.000209
ORF1ab/nsp31200P1200PccAccT33AY.30.00003
ORF1ab/nsp31200P1200PccAccG33AY.330.0002
ORF1ab/nsp31200P1200SCcaTca33AY.340.000291
ORF1ab/nsp31200P1200LcCacTa33AY.34.10.00153
ORF1ab/nsp31200P1200LcCacTa33AY.400.002893
ORF1ab/nsp31200P1200PccAccG33AY.470.000093
ORF1ab/nsp31200P1200TCcaAca33AY.70.000588
ORF1ab/nsp31200P1200PccAccG23AY.750.000112
ORF1ab/nsp31200P1200PccAccT13AY.750.000056
ORF1ab/nsp31200P1200SCcaTca33AY.780.004622
ORF1ab/nsp31200P1200PccAccG33AY.99.20.000276
ORF1ab/nsp31200P1200delCCA---33B.10.000027
ORF1ab/nsp31200P1200PccAccG33B.1.1.1610.010601
ORF1ab/nsp31200P1200SCcaTca33B.1.1.1700.003741
ORF1ab/nsp31200P1200LcCacTa33B.1.1.2410.006211
ORF1ab/nsp31200P1200SCcaTca33B.1.1.280.000934
ORF1ab/nsp31200P1200PccAccG33B.1.1.3720.002066
ORF1ab/nsp31200P1200delCCA---33B.1.1.70.000003
ORF1ab/nsp31200P1200LcCacTa33B.1.177.320.004049
ORF1ab/nsp31200P1200SCcaTca33B.1.177.650.001996
ORF1ab/nsp31200P1200PccAccG33B.1.20.000026
ORF1ab/nsp31200P1200SCcaTca33B.1.221.30.0025
ORF1ab/nsp31200P1200LcCacTa33B.1.258.170.000312
ORF1ab/nsp31200P1200TCcaAca33B.1.3510.000089
ORF1ab/nsp31200P1200SCcaTca33B.1.36.310.005254
ORF1ab/nsp31200P1200LcCacTa33B.1.5650.002431
ORF1ab/nsp31200P1200SCcaTca33B.1.5650.002431
ORF1ab/nsp31200P1200PccAccG33B.1.5960.000261
ORF1ab/nsp31200P1200PccAccG33B.1.6230.001609
ORF1ab/nsp31200P1200LcCacTa33C.370.000348
ORF1ab/nsp31200P1200SCcaTca33N.50.0053
ORF1ab/nsp31200P1200SCcATcG33P.1.70.000958
ORF1ab/nsp31200P1200SCcaTca33Q.80.000495
ORF1ab/nsp31200P1200LcCacTa22AL.10.025974
ORF1ab/nsp31200P1200del1ccAcc-22All0
ORF1ab/nsp31200P1200PccAccG22AY.1000.000092
ORF1ab/nsp31200P1200SCcaTca22AY.1180.000125
ORF1ab/nsp31200P1200SCcaTca22AY.1210.000271
ORF1ab/nsp31200P1200LcCacTa22AY.140.000176
ORF1ab/nsp31200P1200LcCacTa22AY.200.000078
ORF1ab/nsp31200P1200SCcaTca22AY.23.10.000835
ORF1ab/nsp31200P1200LcCacTa22AY.270.000129
ORF1ab/nsp31200P1200LcCacTa22AY.39.10.000079
ORF1ab/nsp31200P1200QcCacAa22AY.4.20.000043
ORF1ab/nsp31200P1200TCcaAca22AY.430.000009
ORF1ab/nsp31200P1200LcCacTa22AY.450.000243
ORF1ab/nsp31200P1200ACcaGca22AY.50.000041
ORF1ab/nsp31200P1200LcCacTa22AY.610.00021
ORF1ab/nsp31200P1200SCcaTca22AY.630.000774
ORF1ab/nsp31200P1200LcCacTa22AY.690.000373
ORF1ab/nsp31200P1200PccAccG22AY.75.10.000361
ORF1ab/nsp31200P1200SCcaTca22AY.800.002257
ORF1ab/nsp31200P1200LcCacTa22AY.850.000854
ORF1ab/nsp31200P1200SCcaTca22AY.890.009804
ORF1ab/nsp31200P1200SCcaTca22AY.90.000135
ORF1ab/nsp31200P1200SCcaTca22AY.910.001461
ORF1ab/nsp31200P1200LcCacTa22AY.950.001522
ORF1ab/nsp31200P1200SCcaTca22AY.980.000158
ORF1ab/nsp31200P1200LcCacTa22B0.000256
ORF1ab/nsp31200P1200SCcaTca22B0.000256
ORF1ab/nsp31200P1200TCcaAca12B0.000128
ORF1ab/nsp31200P1200TCcAAcT12B0.000128
ORF1ab/nsp31200P1200SCcaTca22B.1.1.2140.000111
ORF1ab/nsp31200P1200SCcaTca22B.1.1.2190.01
ORF1ab/nsp31200P1200SCcaTca22B.1.1.3060.000877
ORF1ab/nsp31200P1200SCcaTca22B.1.1.330.000842
ORF1ab/nsp31200P1200PccAccG12B.1.1.330.000421
ORF1ab/nsp31200P1200PccAccT12B.1.1.330.000421
ORF1ab/nsp31200P1200PccAccG22B.1.1.3480.001592
ORF1ab/nsp31200P1200PccAccG22B.1.1.4090.005666
ORF1ab/nsp31200P1200PccAccG22B.1.1.5070.017391
ORF1ab/nsp31200P1200PccAccG22B.1.1.540.006042
ORF1ab/nsp31200P1200SCcaTca22B.1.1.570.022989
ORF1ab/nsp31200P1200ACcaGca22B.1.1.70.000002
ORF1ab/nsp31200P1200SCcaTca22B.1.1470.001512
ORF1ab/nsp31200P1200QcCacAa22B.1.1770.000026
ORF1ab/nsp31200P1200PccAccG22B.1.1770.000026
ORF1ab/nsp31200P1200LCCaTTa12B.1.177.60.000977
ORF1ab/nsp31200P1200LcCacTa12B.1.177.60.000977
ORF1ab/nsp31200P1200SCcaTca22B.1.1950.01005
ORF1ab/nsp31200P1200LcCacTa22B.1.2430.000139
ORF1ab/nsp31200P1200SCcaTca22B.1.258.20.009009
ORF1ab/nsp31200P1200SCcaTca22B.1.3060.011429
ORF1ab/nsp31200P1200SCcaTca22B.1.3110.000549
ORF1ab/nsp31200P1200PccAccG22B.1.3240.00321
ORF1ab/nsp31200P1200SCcaTca22B.1.360.000292
ORF1ab/nsp31200P1200SCcaTca22B.1.36.220.002415
ORF1ab/nsp31200P1200LcCacTa22B.1.36.290.001035
ORF1ab/nsp31200P1200LcCacTa22B.1.4090.001563
ORF1ab/nsp31200P1200LcCacTa22B.1.4270.000101
ORF1ab/nsp31200P1200TCcaAca22B.1.4290.000047
ORF1ab/nsp31200P1200SCcaTca22B.1.438.10.000215
ORF1ab/nsp31200P1200QcCacAa22B.1.4600.035714
ORF1ab/nsp31200P1200SCcaTca22B.1.4690.00722
ORF1ab/nsp31200P1200PccAccG22B.1.5260.000047
ORF1ab/nsp31200P1200PccAccG22B.1.5330.019231
ORF1ab/nsp31200P1200LcCacTa22B.1.6210.000177
ORF1ab/nsp31200P1200SCcaTca22B.1.6210.000177
ORF1ab/nsp31200P1200SCcaTca22B.1.6230.001073
ORF1ab/nsp31200P1200SCcaTca22B.1.6370.000146
ORF1ab/nsp31200P1200SCcaTca22B.1.90.012346
ORF1ab/nsp31200P1200TCcaAca22C.370.000232
ORF1ab/nsp31200P1200PccAccG22C.390.037736
ORF1ab/nsp31200P1200SCcATcG22P.1.170.000324
ORF1ab/nsp31200P1200SCcATcG22P.1.17.10.00175
ORF1ab/nsp31200P1200SCcaTca22Q.40.00091
ORF1ab/nsp31200P1200LcCacTa22Q.80.00033
ORF1ab/nsp31200P1200TCcaAca22R.10.00018
ORF1ab/nsp31200P1200SCcaTca11A.20.000662
ORF1ab/nsp31200P1200SCcaTca11A.2.40.003367
ORF1ab/nsp31200P1200LcCacTa11AE.50.018519
ORF1ab/nsp31200P1200RcCacGa11All0
ORF1ab/nsp31200P1200VCCAGTC11All0
ORF1ab/nsp31200P1200SCcaTca11AP.10.001502
ORF1ab/nsp31200P1200SCcaTca11AU.10.001266
ORF1ab/nsp31200P1200LcCacTa11AW.10.003049
ORF1ab/nsp31200P1200SCcaTca11AY.100.00053
ORF1ab/nsp31200P1200delCCA---11AY.1010.00049
ORF1ab/nsp31200P1200PccAccT11AY.1030.000006
ORF1ab/nsp31200P1200LcCacTa11AY.1060.000335
ORF1ab/nsp31200P1200LcCacTa11AY.1100.000113
ORF1ab/nsp31200P1200LcCacTa11AY.1110.000183
ORF1ab/nsp31200P1200SCcaTca11AY.1130.000142
ORF1ab/nsp31200P1200SCcaTca11AY.1150.005208
ORF1ab/nsp31200P1200LcCacTa11AY.1160.000287
ORF1ab/nsp31200P1200PccAccG11AY.1160.000287
ORF1ab/nsp31200P1200LcCacTa11AY.116.10.000311
ORF1ab/nsp31200P1200TCcaAca11AY.1190.000035
ORF1ab/nsp31200P1200LcCacTa11AY.120.20.001285
ORF1ab/nsp31200P1200SCcaTca11AY.130.000161
ORF1ab/nsp31200P1200LcCacTa11AY.130.000161
ORF1ab/nsp31200P1200SCcaTca11AY.190.00114
ORF1ab/nsp31200P1200QcCacAa11AY.200.000039
ORF1ab/nsp31200P1200LcCacTa11AY.220.002092
ORF1ab/nsp31200P1200delCCA---11AY.230.00007
ORF1ab/nsp31200P1200SCcaTca11AY.240.000431
ORF1ab/nsp31200P1200TCcaAca11AY.290.000016
ORF1ab/nsp31200P1200LcCacTa11AY.29.10.000221
ORF1ab/nsp31200P1200delCCA---11AY.30.00001
ORF1ab/nsp31200P1200QcCacAa11AY.3.10.000085
ORF1ab/nsp31200P1200VCCAGTC11AY.300.000396
ORF1ab/nsp31200P1200LcCacTa11AY.320.000532
ORF1ab/nsp31200P1200LcCacTa11AY.330.000067
ORF1ab/nsp31200P1200PccAccG11AY.340.000097
ORF1ab/nsp31200P1200LcCacTa11AY.340.000097
ORF1ab/nsp31200P1200PccAccG11AY.360.000148
ORF1ab/nsp31200P1200TCcaAca11AY.360.000148
ORF1ab/nsp31200P1200SCcaTca11AY.380.000499
ORF1ab/nsp31200P1200TCcaAca11AY.380.000499
ORF1ab/nsp31200P1200delCCA---11AY.390.000025
ORF1ab/nsp31200P1200TCcaAca11AY.39.10.00004
ORF1ab/nsp31200P1200PccAccT11AY.4.20.000022
ORF1ab/nsp31200P1200PccAccG11AY.4.2.10.000149
ORF1ab/nsp31200P1200QcCacAa11AY.420.00004
ORF1ab/nsp31200P1200PccAccG11AY.420.00004
ORF1ab/nsp31200P1200TCcaAca11AY.420.00004
ORF1ab/nsp31200P1200ACcaGca11AY.430.000004
ORF1ab/nsp31200P1200PccAccG11AY.450.000122
ORF1ab/nsp31200P1200TCcaAca11AY.450.000122
ORF1ab/nsp31200P1200TCcaAca11AY.460.000104
ORF1ab/nsp31200P1200QcCacAa11AY.46.10.001027
ORF1ab/nsp31200P1200SCcaTca11AY.470.000031
ORF1ab/nsp31200P1200QcCAcAG11AY.480.000465
ORF1ab/nsp31200P1200PccAccG11AY.5.20.002463
ORF1ab/nsp31200P1200SCcaTca11AY.5.30.000337
ORF1ab/nsp31200P1200PccAccG11AY.5.30.000337
ORF1ab/nsp31200P1200TCcaAca11AY.5.30.000337
ORF1ab/nsp31200P1200SCcaTca11AY.5.40.000277
ORF1ab/nsp31200P1200PccAccG11AY.500.000799
ORF1ab/nsp31200P1200QcCacAa11AY.520.000814
ORF1ab/nsp31200P1200LcCacTa11AY.540.000095
ORF1ab/nsp31200P1200SCcaTca11AY.550.000917
ORF1ab/nsp31200P1200SCcaTca11AY.580.000907
ORF1ab/nsp31200P1200delCCA---11AY.60.000041
ORF1ab/nsp31200P1200PccAccT11AY.610.000105
ORF1ab/nsp31200P1200LcCacTa11AY.630.000387
ORF1ab/nsp31200P1200delCCA---11AY.660.00107
ORF1ab/nsp31200P1200SCcaTca11AY.70.000196
ORF1ab/nsp31200P1200LcCacTa11AY.7.10.000113
ORF1ab/nsp31200P1200SCcaTca11AY.700.000209
ORF1ab/nsp31200P1200LcCacTa11AY.710.000475
ORF1ab/nsp31200P1200SCcaTca11AY.730.000665
ORF1ab/nsp31200P1200TCcaAca11AY.740.000116
ORF1ab/nsp31200P1200SCcaTca11AY.760.004831
ORF1ab/nsp31200P1200SCcaTca11AY.770.001127
ORF1ab/nsp31200P1200TCcaAca11AY.780.001541
ORF1ab/nsp31200P1200TCcAAcT11AY.790.001211
ORF1ab/nsp31200P1200LcCacTa11AY.820.001357
ORF1ab/nsp31200P1200PccAccG11AY.840.000437
ORF1ab/nsp31200P1200SCcaTca11AY.840.000437
ORF1ab/nsp31200P1200delCCA---11AY.850.000427
ORF1ab/nsp31200P1200LcCacTa11AY.9.10.000084
ORF1ab/nsp31200P1200SCcaTca11AY.9.10.000084
ORF1ab/nsp31200P1200PccAccG11AY.9.20.000037
ORF1ab/nsp31200P1200LcCacTa11AY.980.000079
ORF1ab/nsp31200P1200PccAccG11AY.98.10.000048
ORF1ab/nsp31200P1200delCCA---11AY.990.001049
ORF1ab/nsp31200P1200SCcaTca11AY.99.20.000092
ORF1ab/nsp31200P1200ACcaGca11B.10.000009
ORF1ab/nsp31200P1200del1ccAcc-11B.10.000009
ORF1ab/nsp31200P1200TCcaAca11B.1.10.000018
ORF1ab/nsp31200P1200SCcaTca11B.1.1.10.000327
ORF1ab/nsp31200P1200SCcaTca11B.1.1.1610.003534
ORF1ab/nsp31200P1200LcCacTa11B.1.1.1740.003378
ORF1ab/nsp31200P1200LcCacTa11B.1.1.1860.003436
ORF1ab/nsp31200P1200PccAccG11B.1.1.1860.003436
ORF1ab/nsp31200P1200LcCacTa11B.1.1.1890.001513
ORF1ab/nsp31200P1200LcCacTa11B.1.1.2140.000055
ORF1ab/nsp31200P1200SCcaTca11B.1.1.2160.00089
ORF1ab/nsp31200P1200PccAccG11B.1.1.2200.001859
ORF1ab/nsp31200P1200TCcaAca11B.1.1.2220.000204
ORF1ab/nsp31200P1200SCcaTca11B.1.1.2220.000204
ORF1ab/nsp31200P1200LcCacTa11B.1.1.2270.004348
ORF1ab/nsp31200P1200SCcaTca11B.1.1.2340.012048
ORF1ab/nsp31200P1200SCcaTca11B.1.1.250.000569
ORF1ab/nsp31200P1200LcCacTa11B.1.1.2620.015152
ORF1ab/nsp31200P1200ACcaGca11B.1.1.280.000311
ORF1ab/nsp31200P1200LcCacTa11B.1.1.280.000311
ORF1ab/nsp31200P1200LcCacTa11B.1.1.2940.001266
ORF1ab/nsp31200P1200SCcaTca11B.1.1.3020.002075
ORF1ab/nsp31200P1200SCcaTca11B.1.1.3050.003861
ORF1ab/nsp31200P1200delCCA---11B.1.1.3150.008475
ORF1ab/nsp31200P1200LcCacTa11B.1.1.3160.000925
ORF1ab/nsp31200P1200SCcaTca11B.1.1.3170.000412
ORF1ab/nsp31200P1200delCCA---11B.1.1.3480.000796
ORF1ab/nsp31200P1200PccAccG11B.1.1.3690.000446
ORF1ab/nsp31200P1200PccAccG11B.1.1.3780.007299
ORF1ab/nsp31200P1200SCcaTca11B.1.1.3980.003226
ORF1ab/nsp31200P1200TCcaAca11B.1.1.4200.001006
ORF1ab/nsp31200P1200SCcaTca11B.1.1.4480.002033
ORF1ab/nsp31200P1200SCcaTca11B.1.1.4640.001473
ORF1ab/nsp31200P1200PccAccG11B.1.1.500.000679
ORF1ab/nsp31200P1200PccAccG11B.1.1.5190.00004
ORF1ab/nsp31200P1200SCcaTca11B.1.1.630.000386
ORF1ab/nsp31200P1200RcCacGa11B.1.1.70.000001
ORF1ab/nsp31200P1200PccAccT11B.1.1.700.000341
ORF1ab/nsp31200P1200LcCacTa11B.1.1.80.003584
ORF1ab/nsp31200P1200SCcaTca11B.1.110.30.000718
ORF1ab/nsp31200P1200TCcaAca11B.1.130.002375
ORF1ab/nsp31200P1200SCcaTca11B.1.1460.004237
ORF1ab/nsp31200P1200TCcaAca11B.1.1570.002985
ORF1ab/nsp31200P1200SCcaTca11B.1.1590.012195
ORF1ab/nsp31200P1200TCcaAca11B.1.1600.000031
ORF1ab/nsp31200P1200SCcaTca11B.1.160.90.007194
ORF1ab/nsp31200P1200SCcaTca11B.1.177.110.001698
ORF1ab/nsp31200P1200LcCacTa11B.1.177.150.000631
ORF1ab/nsp31200P1200SCcaTca11B.1.177.150.000631
ORF1ab/nsp31200P1200SCcaTca11B.1.177.210.000076
ORF1ab/nsp31200P1200LcCacTa11B.1.177.210.000076
ORF1ab/nsp31200P1200PccAccG11B.1.177.310.011494
ORF1ab/nsp31200P1200SCcaTca11B.1.177.350.000691
ORF1ab/nsp31200P1200LcCacTa11B.1.177.440.000519
ORF1ab/nsp31200P1200LcCacTa11B.1.177.450.000381
ORF1ab/nsp31200P1200LcCacTa11B.1.177.530.002392
ORF1ab/nsp31200P1200SCcaTca11B.1.177.560.000668
ORF1ab/nsp31200P1200SCcaTca11B.1.177.570.000281
ORF1ab/nsp31200P1200SCcaTca11B.1.177.580.001332
ORF1ab/nsp31200P1200delCCA---11B.1.177.620.001192
ORF1ab/nsp31200P1200PccAccG11B.1.177.70.000165
ORF1ab/nsp31200P1200TCcaAca11B.1.177.750.001041
ORF1ab/nsp31200P1200SCcaTca11B.1.177.860.000183
ORF1ab/nsp31200P1200SCcaTca11B.1.177.870.000728
ORF1ab/nsp31200P1200PccAccG11B.1.1790.003759
ORF1ab/nsp31200P1200delCCA---11B.1.20.000009
ORF1ab/nsp31200P1200PccAccG11B.1.2140.003663
ORF1ab/nsp31200P1200PccAccG11B.1.214.20.0006
ORF1ab/nsp31200P1200PccAccG11B.1.2210.000071
ORF1ab/nsp31200P1200SCcaTca11B.1.221.40.004167
ORF1ab/nsp31200P1200LcCacTa11B.1.2320.000537
ORF1ab/nsp31200P1200PccAccT11B.1.2340.000132
ORF1ab/nsp31200P1200LcCacTa11B.1.2340.000132
ORF1ab/nsp31200P1200SCcaTca11B.1.2370.004975
ORF1ab/nsp31200P1200PccAccG11B.1.2410.000812
ORF1ab/nsp31200P1200SCcaTca11B.1.258.110.000396
ORF1ab/nsp31200P1200SCcaTca11B.1.258.170.000104
ORF1ab/nsp31200P1200QcCacAa11B.1.2600.003344
ORF1ab/nsp31200P1200SCcaTca11B.1.3190.003049
ORF1ab/nsp31200P1200SCcaTca11B.1.3260.007576
ORF1ab/nsp31200P1200SCcaTca11B.1.3360.002439
ORF1ab/nsp31200P1200SCcaTca11B.1.3440.008197
ORF1ab/nsp31200P1200PccAccG11B.1.3490.000715
ORF1ab/nsp31200P1200SCcaTca11B.1.351.20.000303
ORF1ab/nsp31200P1200LcCacTa11B.1.351.30.000876
ORF1ab/nsp31200P1200LCCaTTa11B.1.360.000146
ORF1ab/nsp31200P1200LcCacTa11B.1.36.170.000494
ORF1ab/nsp31200P1200SCcaTca11B.1.36.180.00042
ORF1ab/nsp31200P1200QcCacAa11B.1.36.290.000517
ORF1ab/nsp31200P1200SCcaTca11B.1.36.290.000517
ORF1ab/nsp31200P1200SCcaTca11B.1.3620.001541
ORF1ab/nsp31200P1200SCcaTca11B.1.3660.004878
ORF1ab/nsp31200P1200LcCacTa11B.1.3670.000792
ORF1ab/nsp31200P1200SCcaTca11B.1.3690.000285
ORF1ab/nsp31200P1200SCcaTca11B.1.3980.002976
ORF1ab/nsp31200P1200PccAccG11B.1.3990.001934
ORF1ab/nsp31200P1200LcCacTa11B.1.4020.009804
ORF1ab/nsp31200P1200PccAccG11B.1.4040.001302
ORF1ab/nsp31200P1200SCcaTca11B.1.4090.000781
ORF1ab/nsp31200P1200PccAccT11B.1.416.10.001563
ORF1ab/nsp31200P1200PccAccG11B.1.4270.00005
ORF1ab/nsp31200P1200TCcaAca11B.1.4270.00005
ORF1ab/nsp31200P1200PccAccG11B.1.4330.003195
ORF1ab/nsp31200P1200LcCacTa11B.1.4590.004082
ORF1ab/nsp31200P1200QcCacAa11B.1.4620.007246
ORF1ab/nsp31200P1200SCcaTca11B.1.4630.008065
ORF1ab/nsp31200P1200SCcaTca11B.1.4740.001901
ORF1ab/nsp31200P1200SCcaTca11B.1.5170.000427
ORF1ab/nsp31200P1200PccAccG11B.1.5170.000427
ORF1ab/nsp31200P1200LcCacTa11B.1.5210.004975
ORF1ab/nsp31200P1200SCcaTca11B.1.5230.002451
ORF1ab/nsp31200P1200LcCacTa11B.1.5250.000113
ORF1ab/nsp31200P1200SCcaTca11B.1.5640.000426
ORF1ab/nsp31200P1200SCcaTca11B.1.5760.000907
ORF1ab/nsp31200P1200SCcaTca11B.1.5820.000491
ORF1ab/nsp31200P1200LcCacTa11B.1.5950.000261
ORF1ab/nsp31200P1200LcCacTa11B.1.5960.000087
ORF1ab/nsp31200P1200LcCacTa11B.1.617.10.000129
ORF1ab/nsp31200P1200SCcaTca11B.1.617.10.000129
ORF1ab/nsp31200P1200PccAccG11B.1.6200.000946
ORF1ab/nsp31200P1200LcCacTa11B.1.6280.000352
ORF1ab/nsp31200P1200delCCA---11B.1.6300.005236
ORF1ab/nsp31200P1200SCcaTca11B.1.6310.003367
ORF1ab/nsp31200P1200PccAccG11B.1.6310.003367
ORF1ab/nsp31200P1200SCcaTca11B.1.6340.003425
ORF1ab/nsp31200P1200SCcaTca11B.1.810.021277
ORF1ab/nsp31200P1200SCcaTca11B.1.9.50.005682
ORF1ab/nsp31200P1200SCcaTca11B.270.015385
ORF1ab/nsp31200P1200SCcaTca11B.30.000831
ORF1ab/nsp31200P1200LcCacTa11B.390.002331
ORF1ab/nsp31200P1200TCcaAca11B.4.50.011905
ORF1ab/nsp31200P1200SCcaTca11B.60.00091
ORF1ab/nsp31200P1200TCcaAca11B.60.00091
ORF1ab/nsp31200P1200SCcaTca11B.6.60.000889
ORF1ab/nsp31200P1200LcCacTa11C.160.00106
ORF1ab/nsp31200P1200SCcaTca11C.270.018519
ORF1ab/nsp31200P1200SCcaTca11C.300.001727
ORF1ab/nsp31200P1200SCcaTca11C.330.058824
ORF1ab/nsp31200P1200LcCacTa11C.350.000774
ORF1ab/nsp31200P1200PccAccG11C.350.000774
ORF1ab/nsp31200P1200TCcaAca11C.360.000911
ORF1ab/nsp31200P1200SCcaTca11C.360.000911
ORF1ab/nsp31200P1200TCcaAca11C.36.30.000567
ORF1ab/nsp31200P1200LcCacTa11L.30.003546
ORF1ab/nsp31200P1200PccAccG11N.10.016949
ORF1ab/nsp31200P1200PccAccG11N.40.004255
ORF1ab/nsp31200P1200PccAccG11N.60.007092
ORF1ab/nsp31200P1200del1ccAcc-11P.10.000016
ORF1ab/nsp31200P1200delCCA---11P.10.000016
ORF1ab/nsp31200P1200SCcATcG11P.1.10.000318
ORF1ab/nsp31200P1200LcCAcTG11P.1.150.000232
ORF1ab/nsp31200P1200LcCAcTG11P.1.70.000319
ORF1ab/nsp31200P1200LcCacTa11P.30.001595
ORF1ab/nsp31200P1200PccAccG11Q.10.000126
ORF1ab/nsp31200P1200SCcaTca11Q.10.000126