CoV-GLUEGenomeCountriesLineagesMutationsInsertionsDeletionsUpdated:

CoV-GLUE | Mutations | Mutation

CoV-GLUE Mutation: ORF = ORF1ab/nsp3 : CodonNum = 1198 & Codon = aAa

Details of the codons used for the mutation across all lineages (CodonProp is the proportion each codon is used for this AA mutation):

ORFCodonNumMutORF1abMutMutTypeRefCodonMutCodonAACountCodonCountCodonPropGenome Position
ORF1ab/nsp31198T1198KT2016KnonsynaCaaAa3229322916311-6313

Details of the mutation no within lineages (LineageCodonProp is the proportion the codon is observed at, at this particular site, on each lineage):

ORFCodonNumMutRefCodonMutCodonCodonCountAACountLineageLineageCodonProp
ORF1ab/nsp31198T1198KaCaaAa32293229All0.000618
ORF1ab/nsp31198T1198KaCaaAa11091109B.6.60.985778
ORF1ab/nsp31198T1198KaCaaAa10081008B.60.917197
ORF1ab/nsp31198T1198KaCaaAa158158B.1.1.411
ORF1ab/nsp31198T1198KaCaaAa157157B.1.1.70.000141
ORF1ab/nsp31198T1198KaCaaAa121121B.6.81
ORF1ab/nsp31198T1198KaCaaAa108108AY.40.000168
ORF1ab/nsp31198T1198KaCaaAa4545B.1.20.000396
ORF1ab/nsp31198T1198KaCaaAa3838B.6.11
ORF1ab/nsp31198T1198KaCaaAa3838B.6.31
ORF1ab/nsp31198T1198KaCaaAa3636B.1.6370.002631
ORF1ab/nsp31198T1198KaCaaAa3434AY.1210.004601
ORF1ab/nsp31198T1198KaCaaAa3434B.1.617.20.000128
ORF1ab/nsp31198T1198KaCaaAa2828B.10.000256
ORF1ab/nsp31198T1198KaCaaAa2222B.6.41
ORF1ab/nsp31198T1198KaCaaAa2121AY.1030.00013
ORF1ab/nsp31198T1198KaCaaAa1616B.6.21
ORF1ab/nsp31198T1198KaCaaAa1212AY.250.000072
ORF1ab/nsp31198T1198KaCaaAa1212C.370.001393
ORF1ab/nsp31198T1198KaCaaAa1212P.10.000189
ORF1ab/nsp31198T1198KaCaaAa1111AY.440.000067
ORF1ab/nsp31198T1198KaCaaAa1111B0.001406
ORF1ab/nsp31198T1198KaCaaAa1111B.1.177.600.002403
ORF1ab/nsp31198T1198KaCaaAa1111B.6.50.846154
ORF1ab/nsp31198T1198KaCaaAa1010B.1.1.2360.068966
ORF1ab/nsp31198T1198KaCaaAa1010B.1.1.5190.000397
ORF1ab/nsp31198T1198KaCaaAa1010B.1.617.10.00129
ORF1ab/nsp31198T1198KaCaaAa99B.1.1570.026866
ORF1ab/nsp31198T1198KaCaaAa88AY.4.20.000174
ORF1ab/nsp31198T1198KaCaaAa88AY.430.000035
ORF1ab/nsp31198T1198KaCaaAa88B.1.1600.00025
ORF1ab/nsp31198T1198KaCaaAa55AY.760.024155
ORF1ab/nsp31198T1198KaCaaAa44AY.1000.000184
ORF1ab/nsp31198T1198KaCaaAa44AY.1180.000251
ORF1ab/nsp31198T1198KaCaaAa44AY.710.0019
ORF1ab/nsp31198T1198KaCaaAa44B.1.240.10.1
ORF1ab/nsp31198T1198KaCaaAa33A0.001161
ORF1ab/nsp31198T1198KaCaaAa33AY.230.000209
ORF1ab/nsp31198T1198KaCaaAa33AY.30.00003
ORF1ab/nsp31198T1198KaCaaAa33AY.460.000312
ORF1ab/nsp31198T1198KaCaaAa33B.1.3960.002117
ORF1ab/nsp31198T1198KaCaaAa22AY.320.001065
ORF1ab/nsp31198T1198KaCaaAa22AY.330.000134
ORF1ab/nsp31198T1198KaCaaAa22AY.390.000049
ORF1ab/nsp31198T1198KaCaaAa22AY.60.000082
ORF1ab/nsp31198T1198KaCaaAa22B.1.10.000036
ORF1ab/nsp31198T1198KaCaaAa22B.1.1.3060.000877
ORF1ab/nsp31198T1198KaCaaAa22B.1.1.3180.000604
ORF1ab/nsp31198T1198KaCaaAa22B.1.1.3540.008772
ORF1ab/nsp31198T1198KaCaaAa22B.1.177.810.000379
ORF1ab/nsp31198T1198KaCaaAa22B.1.2580.000133
ORF1ab/nsp31198T1198KaCaaAa22B.1.3510.000059
ORF1ab/nsp31198T1198KaCaaAa22B.1.360.000292
ORF1ab/nsp31198T1198KaCaaAa22B.1.3690.00057
ORF1ab/nsp31198T1198KaCaaAa22B.1.4290.000047
ORF1ab/nsp31198T1198KaCaaAa22B.1.5510.002581
ORF1ab/nsp31198T1198KaCaaAa22P.1.150.000465
ORF1ab/nsp31198T1198KaCaaAa22P.1.70.000639
ORF1ab/nsp31198T1198KaCaaAa22Q.30.00029
ORF1ab/nsp31198T1198KaCaaAa11A.2.50.000499
ORF1ab/nsp31198T1198KaCaaAa11AU.10.001266
ORF1ab/nsp31198T1198KaCaaAa11AY.1110.000183
ORF1ab/nsp31198T1198KaCaaAa11AY.1190.000035
ORF1ab/nsp31198T1198KaCaaAa11AY.1200.000037
ORF1ab/nsp31198T1198KaCaaAa11AY.140.000088
ORF1ab/nsp31198T1198KaCaaAa11AY.20.000356
ORF1ab/nsp31198T1198KaCaaAa11AY.200.000039
ORF1ab/nsp31198T1198KaCaaAa11AY.260.000028
ORF1ab/nsp31198T1198KaCaaAa11AY.350.000233
ORF1ab/nsp31198T1198KaCaaAa11AY.370.000316
ORF1ab/nsp31198T1198KaCaaAa11AY.39.10.00004
ORF1ab/nsp31198T1198KaCaaAa11AY.420.00004
ORF1ab/nsp31198T1198KaCaaAa11AY.450.000122
ORF1ab/nsp31198T1198KaCaaAa11AY.470.000031
ORF1ab/nsp31198T1198KaCaaAa11AY.480.000465
ORF1ab/nsp31198T1198KaCaaAa11AY.50.000021
ORF1ab/nsp31198T1198KaCaaAa11AY.620.000436
ORF1ab/nsp31198T1198KaCaaAa11AY.790.001211
ORF1ab/nsp31198T1198KaCaaAa11AY.9.10.000084
ORF1ab/nsp31198T1198KaCaaAa11AY.980.000079
ORF1ab/nsp31198T1198KaCaaAa11AZ.20.000821
ORF1ab/nsp31198T1198KaCaaAa11B.1.1.10.000327
ORF1ab/nsp31198T1198KaCaaAa11B.1.1.1610.003534
ORF1ab/nsp31198T1198KaCaaAa11B.1.1.3890.006061
ORF1ab/nsp31198T1198KaCaaAa11B.1.1.460.004367
ORF1ab/nsp31198T1198KaCaaAa11B.1.1280.000635
ORF1ab/nsp31198T1198KaCaaAa11B.1.177.430.001477
ORF1ab/nsp31198T1198KaCaaAa11B.1.2390.001221
ORF1ab/nsp31198T1198KaCaaAa11B.1.2600.003344
ORF1ab/nsp31198T1198KaCaaAa11B.1.2840.013158
ORF1ab/nsp31198T1198KaCaaAa11B.1.36.100.004785
ORF1ab/nsp31198T1198KaCaaAa11B.1.4110.003704
ORF1ab/nsp31198T1198KaCaaAa11B.1.4160.001269
ORF1ab/nsp31198T1198KaCaaAa11B.1.438.10.000107
ORF1ab/nsp31198T1198KaCaaAa11B.1.5260.000024
ORF1ab/nsp31198T1198KaCaaAa11B.1.6230.000536
ORF1ab/nsp31198T1198KaCaaAa11C.110.010638
ORF1ab/nsp31198T1198KaCaaAa11D.20.000075
ORF1ab/nsp31198T1198KaCaaAa11P.1.130.000898
ORF1ab/nsp31198T1198KaCaaAa11P.1.20.001156

CoV-GLUE is still in development. CoV-GLUE was originally developed as part of COG-UK by Josh Singer using the GLUE framework at the MRC-University of Glasgow Centre for Virus Research (CVR). In 2021 it was redeveloped by Richard Orton to scale to the millions of genome sequences available. We acknowledge support from the MRC (MC_UU_12014/12), WT (220977/Z/20/Z) and UKRI G2P (MR/W005611/1). Please contact Richard Orton with any queries: Richard.Orton@glasgow.ac.uk

CoV-GLUE uses sequence data from GISAID. GISAID data provided via this web application is subject to GISAID's Terms and Conditions.