CoV-GLUE Mutation

CoV-GLUE Mutation: ORF = ORF1ab/nsp3 : CodonNum = 1198

Details of the codons used for the mutation across all lineages (CodonProp is the proportion each codon is used for this AA mutation):

ORF	CodonNum	Mut	ORF1abMut	MutType	RefCodon	MutCodon	AACount	CodonCount	CodonProp	Genome Position
ORF1ab/nsp3	1198	T1198I	T2016I	nonsyn	aCa	aTa	8183	8183	1	6311-6313
ORF1ab/nsp3	1198	T1198K	T2016K	nonsyn	aCa	aAa	3229	3229	1	6311-6313
ORF1ab/nsp3	1198	T1198T	T2016T	syn	acA	acG	177	132	0.745763	6311-6313
ORF1ab/nsp3	1198	T1198T	T2016T	syn	acA	acT	177	34	0.19209	6311-6313
ORF1ab/nsp3	1198	T1198T	T2016T	syn	acA	acC	177	11	0.0621469	6311-6313
ORF1ab/nsp3	1198	T1198A	T2016A	nonsyn	Aca	Gca	69	69	1	6311-6313
ORF1ab/nsp3	1198	T1198S	T2016S	nonsyn	Aca	Tca	36	36	1	6311-6313
ORF1ab/nsp3	1198	T1198del	T2016del	del	ACA	---	23	23	1	6311-6313
ORF1ab/nsp3	1198	T1198P	T2016P	nonsyn	Aca	Cca	22	22	1	6311-6313
ORF1ab/nsp3	1198	T1198del1	T2016del1	del	acA	ac-	12	10	0.833333	6311-6313
ORF1ab/nsp3	1198	T1198del1	T2016del1	del	aCa	a-a	12	2	0.166667	6311-6313
ORF1ab/nsp3	1198	T1198R	T2016R	nonsyn	aCa	aGa	4	4	1	6311-6313
ORF1ab/nsp3	1198	T1198L	T2016L	nonsyn	ACa	TTa	3	1	0.333333	6311-6313
ORF1ab/nsp3	1198	T1198L	T2016L	nonsyn	ACa	CTa	3	1	0.333333	6311-6313
ORF1ab/nsp3	1198	T1198L	T2016L	nonsyn	ACA	TTG	3	1	0.333333	6311-6313
ORF1ab/nsp3	1198	T1198V	T2016V	nonsyn	ACa	GTa	1	1	1	6311-6313

Details of the mutation no within lineages (LineageCodonProp is the proportion the codon is observed at, at this particular site, on each lineage):

ORF	CodonNum	Mut	RefCodon	MutCodon	CodonCount	AACount	Lineage	LineageCodonProp
ORF1ab/nsp3	1198	T1198I	aCa	aTa	8183	8183	All	0.001565
ORF1ab/nsp3	1198	T1198K	aCa	aAa	3229	3229	All	0.000618
ORF1ab/nsp3	1198	T1198I	aCa	aTa	1593	1593	B.1.1.7	0.001426
ORF1ab/nsp3	1198	T1198K	aCa	aAa	1109	1109	B.6.6	0.985778
ORF1ab/nsp3	1198	T1198K	aCa	aAa	1008	1008	B.6	0.917197
ORF1ab/nsp3	1198	T1198I	aCa	aTa	940	940	B.1.617.2	0.003539
ORF1ab/nsp3	1198	T1198I	aCa	aTa	674	674	AY.4	0.001049
ORF1ab/nsp3	1198	T1198I	aCa	aTa	650	650	B.1.524	0.914205
ORF1ab/nsp3	1198	T1198I	aCa	aTa	486	486	AY.43	0.002153
ORF1ab/nsp3	1198	T1198I	aCa	aTa	354	354	B.1.2	0.003117
ORF1ab/nsp3	1198	T1198I	aCa	aTa	307	307	AY.4.2	0.006658
ORF1ab/nsp3	1198	T1198T	acA	acG	132	177	All	0.000025
ORF1ab/nsp3	1198	T1198T	acA	acT	34	177	All	0.000007
ORF1ab/nsp3	1198	T1198T	acA	acC	11	177	All	0.000002
ORF1ab/nsp3	1198	T1198I	aCa	aTa	164	164	AY.34.1	0.083631
ORF1ab/nsp3	1198	T1198I	aCa	aTa	161	161	AY.120	0.005986
ORF1ab/nsp3	1198	T1198K	aCa	aAa	158	158	B.1.1.41	1
ORF1ab/nsp3	1198	T1198K	aCa	aAa	157	157	B.1.1.7	0.000141
ORF1ab/nsp3	1198	T1198I	aCa	aTa	129	129	AY.44	0.000785
ORF1ab/nsp3	1198	T1198I	aCa	aTa	125	125	B.1.258.17	0.012996
ORF1ab/nsp3	1198	T1198K	aCa	aAa	121	121	B.6.8	1
ORF1ab/nsp3	1198	T1198I	aCa	aTa	112	112	B.1	0.001026
ORF1ab/nsp3	1198	T1198I	aCa	aTa	111	111	P.1	0.001749
ORF1ab/nsp3	1198	T1198K	aCa	aAa	108	108	AY.4	0.000168
ORF1ab/nsp3	1198	T1198I	aCa	aTa	108	108	Q.3	0.015664
ORF1ab/nsp3	1198	T1198I	aCa	aTa	100	100	AY.102	0.002651
ORF1ab/nsp3	1198	T1198T	acA	acG	78	78	AY.103	0.000484
ORF1ab/nsp3	1198	T1198I	aCa	aTa	77	77	P.1.1	0.02446
ORF1ab/nsp3	1198	T1198I	aCa	aTa	71	71	B.1.351.2	0.021483
ORF1ab/nsp3	1198	T1198A	Aca	Gca	69	69	All	0.000013
ORF1ab/nsp3	1198	T1198I	aCa	aTa	68	68	AY.3	0.000676
ORF1ab/nsp3	1198	T1198I	aCa	aTa	66	66	AY.25	0.000397
ORF1ab/nsp3	1198	T1198I	aCa	aTa	62	62	B.1.177	0.000816
ORF1ab/nsp3	1198	T1198I	aCa	aTa	60	60	B.1.36.23	0.983607
ORF1ab/nsp3	1198	T1198I	aCa	aTa	57	57	B.1.1.318	0.0172
ORF1ab/nsp3	1198	T1198I	aCa	aTa	49	49	B.1.1	0.000889
ORF1ab/nsp3	1198	T1198K	aCa	aAa	45	45	B.1.2	0.000396
ORF1ab/nsp3	1198	T1198I	aCa	aTa	45	45	B.1.596	0.003921
ORF1ab/nsp3	1198	T1198I	aCa	aTa	44	44	AY.103	0.000273
ORF1ab/nsp3	1198	T1198I	aCa	aTa	42	42	AY.39	0.001038
ORF1ab/nsp3	1198	T1198I	aCa	aTa	41	41	AY.13	0.0066
ORF1ab/nsp3	1198	T1198I	aCa	aTa	40	40	AY.98.1	0.001937
ORF1ab/nsp3	1198	T1198I	aCa	aTa	40	40	B.1.427	0.00202
ORF1ab/nsp3	1198	T1198I	aCa	aTa	38	38	B.1.1.222	0.007752
ORF1ab/nsp3	1198	T1198K	aCa	aAa	38	38	B.6.1	1
ORF1ab/nsp3	1198	T1198K	aCa	aAa	38	38	B.6.3	1
ORF1ab/nsp3	1198	T1198S	Aca	Tca	36	36	All	0.000007
ORF1ab/nsp3	1198	T1198K	aCa	aAa	36	36	B.1.637	0.002631
ORF1ab/nsp3	1198	T1198I	aCa	aTa	35	35	B.1.160.14	0.074153
ORF1ab/nsp3	1198	T1198K	aCa	aAa	34	34	AY.121	0.004601
ORF1ab/nsp3	1198	T1198K	aCa	aAa	34	34	B.1.617.2	0.000128
ORF1ab/nsp3	1198	T1198I	aCa	aTa	33	33	C.26	0.242647
ORF1ab/nsp3	1198	T1198I	aCa	aTa	31	31	AY.46	0.003226
ORF1ab/nsp3	1198	T1198I	aCa	aTa	31	31	B.1.177.12	0.004703
ORF1ab/nsp3	1198	T1198I	aCa	aTa	29	29	B.1.1.519	0.001152
ORF1ab/nsp3	1198	T1198I	aCa	aTa	28	28	AY.6	0.001152
ORF1ab/nsp3	1198	T1198K	aCa	aAa	28	28	B.1	0.000256
ORF1ab/nsp3	1198	T1198I	aCa	aTa	28	28	B.1.160	0.000873
ORF1ab/nsp3	1198	T1198I	aCa	aTa	27	27	AY.119	0.000953
ORF1ab/nsp3	1198	T1198I	aCa	aTa	27	27	AY.20	0.001049
ORF1ab/nsp3	1198	T1198I	aCa	aTa	27	27	AY.42	0.001086
ORF1ab/nsp3	1198	T1198I	aCa	aTa	27	27	B.1.1.298	0.023276
ORF1ab/nsp3	1198	T1198I	aCa	aTa	27	27	B.1.526	0.000635
ORF1ab/nsp3	1198	T1198I	aCa	aTa	27	27	B.1.621	0.00239
ORF1ab/nsp3	1198	T1198I	aCa	aTa	26	26	AY.33	0.001736
ORF1ab/nsp3	1198	T1198I	aCa	aTa	25	25	AY.5	0.000516
ORF1ab/nsp3	1198	T1198I	aCa	aTa	25	25	AY.78	0.038521
ORF1ab/nsp3	1198	T1198del	ACA	---	23	23	All	0.000004
ORF1ab/nsp3	1198	T1198I	aCa	aTa	23	23	B.1.466.2	0.008998
ORF1ab/nsp3	1198	T1198I	aCa	aTa	23	23	B.1.637	0.001681
ORF1ab/nsp3	1198	T1198P	Aca	Cca	22	22	All	0.000004
ORF1ab/nsp3	1198	T1198I	aCa	aTa	22	22	B.1.1.284	0.002363
ORF1ab/nsp3	1198	T1198K	aCa	aAa	22	22	B.6.4	1
ORF1ab/nsp3	1198	T1198K	aCa	aAa	21	21	AY.103	0.00013
ORF1ab/nsp3	1198	T1198I	aCa	aTa	20	20	B.1.568	0.022222
ORF1ab/nsp3	1198	T1198I	aCa	aTa	19	19	B.1.351	0.000565
ORF1ab/nsp3	1198	T1198I	aCa	aTa	18	18	B.1.362	0.027735
ORF1ab/nsp3	1198	T1198T	acA	acG	11	17	B.1.1.7	0.00001
ORF1ab/nsp3	1198	T1198T	acA	acT	6	17	B.1.1.7	0.000005
ORF1ab/nsp3	1198	T1198I	aCa	aTa	16	16	A.2.5.1	0.076923
ORF1ab/nsp3	1198	T1198I	aCa	aTa	16	16	AY.118	0.001002
ORF1ab/nsp3	1198	T1198I	aCa	aTa	16	16	B.1.36.29	0.008277
ORF1ab/nsp3	1198	T1198I	aCa	aTa	16	16	B.1.429	0.000376
ORF1ab/nsp3	1198	T1198K	aCa	aAa	16	16	B.6.2	1
ORF1ab/nsp3	1198	T1198I	aCa	aTa	15	15	B.1.221	0.001065
ORF1ab/nsp3	1198	T1198I	aCa	aTa	15	15	P.1.14	0.000717
ORF1ab/nsp3	1198	T1198I	aCa	aTa	14	14	AY.47	0.000435
ORF1ab/nsp3	1198	T1198I	aCa	aTa	14	14	AY.71	0.006651
ORF1ab/nsp3	1198	T1198I	aCa	aTa	14	14	B.1.177.75	0.014568
ORF1ab/nsp3	1198	T1198I	aCa	aTa	14	14	B.1.243	0.000974
ORF1ab/nsp3	1198	T1198I	aCa	aTa	14	14	B.6.6	0.012444
ORF1ab/nsp3	1198	T1198I	aCa	aTa	14	14	Q.8	0.002309
ORF1ab/nsp3	1198	T1198I	aCa	aTa	13	13	AY.9.2	0.000477
ORF1ab/nsp3	1198	T1198I	aCa	aTa	13	13	B.1.258	0.000865
ORF1ab/nsp3	1198	T1198del1	acA	ac-	10	12	All	0.000002
ORF1ab/nsp3	1198	T1198del1	aCa	a-a	2	12	All	0
ORF1ab/nsp3	1198	T1198I	aCa	aTa	12	12	AY.10	0.006359
ORF1ab/nsp3	1198	T1198A	Aca	Gca	12	12	AY.103	0.000075
ORF1ab/nsp3	1198	T1198I	aCa	aTa	12	12	AY.23	0.000837
ORF1ab/nsp3	1198	T1198K	aCa	aAa	12	12	AY.25	0.000072
ORF1ab/nsp3	1198	T1198I	aCa	aTa	12	12	AY.29	0.000189
ORF1ab/nsp3	1198	T1198K	aCa	aAa	12	12	C.37	0.001393
ORF1ab/nsp3	1198	T1198K	aCa	aAa	12	12	P.1	0.000189
ORF1ab/nsp3	1198	T1198K	aCa	aAa	11	11	AY.44	0.000067
ORF1ab/nsp3	1198	T1198I	aCa	aTa	11	11	AZ.2	0.009031
ORF1ab/nsp3	1198	T1198K	aCa	aAa	11	11	B	0.001406
ORF1ab/nsp3	1198	T1198I	aCa	aTa	11	11	B.1.1.311	0.00394
ORF1ab/nsp3	1198	T1198A	Aca	Gca	11	11	B.1.1.7	0.00001
ORF1ab/nsp3	1198	T1198K	aCa	aAa	11	11	B.1.177.60	0.002403
ORF1ab/nsp3	1198	T1198K	aCa	aAa	11	11	B.6.5	0.846154
ORF1ab/nsp3	1198	T1198T	acA	acT	10	10	AY.3	0.000099
ORF1ab/nsp3	1198	T1198T	acA	acC	8	10	AY.43	0.000035
ORF1ab/nsp3	1198	T1198T	acA	acG	2	10	AY.43	0.000009
ORF1ab/nsp3	1198	T1198A	Aca	Gca	10	10	B.1	0.000092
ORF1ab/nsp3	1198	T1198K	aCa	aAa	10	10	B.1.1.236	0.068966
ORF1ab/nsp3	1198	T1198I	aCa	aTa	10	10	B.1.1.50	0.006789
ORF1ab/nsp3	1198	T1198K	aCa	aAa	10	10	B.1.1.519	0.000397
ORF1ab/nsp3	1198	T1198S	Aca	Tca	10	10	B.1.1.7	0.000009
ORF1ab/nsp3	1198	T1198I	aCa	aTa	10	10	B.1.177.7	0.001649
ORF1ab/nsp3	1198	T1198I	aCa	aTa	10	10	B.1.36	0.001459
ORF1ab/nsp3	1198	T1198T	acA	acG	10	10	B.1.429	0.000235
ORF1ab/nsp3	1198	T1198K	aCa	aAa	10	10	B.1.617.1	0.00129
ORF1ab/nsp3	1198	T1198I	aCa	aTa	9	9	AY.3.1	0.000767
ORF1ab/nsp3	1198	T1198I	aCa	aTa	9	9	AY.45	0.001095
ORF1ab/nsp3	1198	T1198I	aCa	aTa	9	9	AY.74	0.001041
ORF1ab/nsp3	1198	T1198T	acA	acG	6	9	B.1	0.000055
ORF1ab/nsp3	1198	T1198T	acA	acT	3	9	B.1	0.000027
ORF1ab/nsp3	1198	T1198P	Aca	Cca	9	9	B.1.1.7	0.000008
ORF1ab/nsp3	1198	T1198K	aCa	aAa	9	9	B.1.157	0.026866
ORF1ab/nsp3	1198	T1198I	aCa	aTa	9	9	L.3	0.031915
ORF1ab/nsp3	1198	T1198K	aCa	aAa	8	8	AY.4.2	0.000174
ORF1ab/nsp3	1198	T1198K	aCa	aAa	8	8	AY.43	0.000035
ORF1ab/nsp3	1198	T1198P	Aca	Cca	8	8	AY.9.1	0.00067
ORF1ab/nsp3	1198	T1198I	aCa	aTa	8	8	B.1.1.348	0.006369
ORF1ab/nsp3	1198	T1198K	aCa	aAa	8	8	B.1.160	0.00025
ORF1ab/nsp3	1198	T1198I	aCa	aTa	8	8	B.1.369	0.002282
ORF1ab/nsp3	1198	T1198I	aCa	aTa	8	8	B.1.575	0.002427
ORF1ab/nsp3	1198	T1198I	aCa	aTa	8	8	C.36	0.007286
ORF1ab/nsp3	1198	T1198I	aCa	aTa	8	8	C.37	0.000929
ORF1ab/nsp3	1198	T1198I	aCa	aTa	7	7	AY.110	0.000789
ORF1ab/nsp3	1198	T1198I	aCa	aTa	7	7	AY.111	0.001282
ORF1ab/nsp3	1198	T1198I	aCa	aTa	7	7	AY.39.1	0.000277
ORF1ab/nsp3	1198	T1198I	aCa	aTa	7	7	AY.46.4	0.001152
ORF1ab/nsp3	1198	T1198I	aCa	aTa	7	7	AY.5.3	0.002362
ORF1ab/nsp3	1198	T1198I	aCa	aTa	7	7	AY.61	0.000733
ORF1ab/nsp3	1198	T1198I	aCa	aTa	7	7	AY.75	0.000392
ORF1ab/nsp3	1198	T1198I	aCa	aTa	7	7	B.1.1.37	0.00135
ORF1ab/nsp3	1198	T1198S	Aca	Tca	7	7	B.1.36	0.001021
ORF1ab/nsp3	1198	T1198I	aCa	aTa	7	7	B.1.595	0.001827
ORF1ab/nsp3	1198	T1198I	aCa	aTa	7	7	Q.1	0.000884
ORF1ab/nsp3	1198	T1198I	aCa	aTa	6	6	A.27	0.009934
ORF1ab/nsp3	1198	T1198I	aCa	aTa	6	6	AY.26	0.00017
ORF1ab/nsp3	1198	T1198I	aCa	aTa	6	6	AY.30	0.002374
ORF1ab/nsp3	1198	T1198I	aCa	aTa	6	6	AY.36	0.000889
ORF1ab/nsp3	1198	T1198A	Aca	Gca	6	6	AY.4	0.000009
ORF1ab/nsp3	1198	T1198I	aCa	aTa	6	6	B.1.1.317	0.00247
ORF1ab/nsp3	1198	T1198I	aCa	aTa	6	6	B.1.146	0.025424
ORF1ab/nsp3	1198	T1198I	aCa	aTa	6	6	B.1.221.1	0.017442
ORF1ab/nsp3	1198	T1198A	Aca	Gca	6	6	B.1.526	0.000141
ORF1ab/nsp3	1198	T1198I	aCa	aTa	5	5	AY.100	0.00023
ORF1ab/nsp3	1198	T1198I	aCa	aTa	5	5	AY.117	0.000423
ORF1ab/nsp3	1198	T1198I	aCa	aTa	5	5	AY.12	0.00158
ORF1ab/nsp3	1198	T1198T	acA	acT	5	5	AY.29	0.000079
ORF1ab/nsp3	1198	T1198S	Aca	Tca	5	5	AY.4	0.000008
ORF1ab/nsp3	1198	T1198I	aCa	aTa	5	5	AY.4.2.1	0.000745
ORF1ab/nsp3	1198	T1198K	aCa	aAa	5	5	AY.76	0.024155
ORF1ab/nsp3	1198	T1198I	aCa	aTa	5	5	AY.88	0.004421
ORF1ab/nsp3	1198	T1198I	aCa	aTa	5	5	AY.98	0.000395
ORF1ab/nsp3	1198	T1198del	ACA	---	5	5	B.1.1.7	0.000004
ORF1ab/nsp3	1198	T1198I	aCa	aTa	5	5	B.1.177.33	0.008224
ORF1ab/nsp3	1198	T1198R	aCa	aGa	4	4	All	0.000001
ORF1ab/nsp3	1198	T1198K	aCa	aAa	4	4	AY.100	0.000184
ORF1ab/nsp3	1198	T1198I	aCa	aTa	4	4	AY.113	0.00057
ORF1ab/nsp3	1198	T1198K	aCa	aAa	4	4	AY.118	0.000251
ORF1ab/nsp3	1198	T1198del	ACA	---	4	4	AY.25	0.000024
ORF1ab/nsp3	1198	T1198I	aCa	aTa	4	4	AY.34	0.000388
ORF1ab/nsp3	1198	T1198A	Aca	Gca	4	4	AY.44	0.000024
ORF1ab/nsp3	1198	T1198I	aCa	aTa	4	4	AY.46.6	0.000289
ORF1ab/nsp3	1198	T1198K	aCa	aAa	4	4	AY.71	0.0019
ORF1ab/nsp3	1198	T1198I	aCa	aTa	4	4	AY.85	0.001709
ORF1ab/nsp3	1198	T1198I	aCa	aTa	4	4	B.1.161	0.068966
ORF1ab/nsp3	1198	T1198I	aCa	aTa	4	4	B.1.177.6	0.003906
ORF1ab/nsp3	1198	T1198I	aCa	aTa	4	4	B.1.240	0.000862
ORF1ab/nsp3	1198	T1198K	aCa	aAa	4	4	B.1.240.1	0.1
ORF1ab/nsp3	1198	T1198I	aCa	aTa	4	4	B.1.627	0.008081
ORF1ab/nsp3	1198	T1198I	aCa	aTa	4	4	B.40	0.001457
ORF1ab/nsp3	1198	T1198I	aCa	aTa	4	4	D.2	0.0003
ORF1ab/nsp3	1198	T1198I	aCa	aTa	4	4	P.2	0.000747
ORF1ab/nsp3	1198	T1198K	aCa	aAa	3	3	A	0.001161
ORF1ab/nsp3	1198	T1198I	aCa	aTa	3	3	A.23.1	0.002113
ORF1ab/nsp3	1198	T1198L	ACA	TTG	1	3	All	0
ORF1ab/nsp3	1198	T1198L	ACa	TTa	1	3	All	0
ORF1ab/nsp3	1198	T1198L	ACa	CTa	1	3	All	0
ORF1ab/nsp3	1198	T1198I	aCa	aTa	3	3	AY.116	0.00086
ORF1ab/nsp3	1198	T1198I	aCa	aTa	3	3	AY.121	0.000406
ORF1ab/nsp3	1198	T1198K	aCa	aAa	3	3	AY.23	0.000209
ORF1ab/nsp3	1198	T1198K	aCa	aAa	3	3	AY.3	0.00003
ORF1ab/nsp3	1198	T1198I	aCa	aTa	3	3	AY.4.5	0.000322
ORF1ab/nsp3	1198	T1198K	aCa	aAa	3	3	AY.46	0.000312
ORF1ab/nsp3	1198	T1198I	aCa	aTa	3	3	AY.5.4	0.00083
ORF1ab/nsp3	1198	T1198T	acA	acG	3	3	AY.57	0.001969
ORF1ab/nsp3	1198	T1198I	aCa	aTa	3	3	AY.95	0.002283
ORF1ab/nsp3	1198	T1198I	aCa	aTa	3	3	AY.99	0.003148
ORF1ab/nsp3	1198	T1198I	aCa	aTa	3	3	B.1.1.214	0.000166
ORF1ab/nsp3	1198	T1198T	acA	acG	3	3	B.1.1.216	0.002671
ORF1ab/nsp3	1198	T1198I	aCa	aTa	3	3	B.1.1.486	0.004732
ORF1ab/nsp3	1198	T1198T	acA	acT	2	3	B.1.177	0.000026
ORF1ab/nsp3	1198	T1198T	acA	acG	1	3	B.1.177	0.000013
ORF1ab/nsp3	1198	T1198I	aCa	aTa	3	3	B.1.177.60	0.000655
ORF1ab/nsp3	1198	T1198I	aCa	aTa	3	3	B.1.177.65	0.001996
ORF1ab/nsp3	1198	T1198I	aCa	aTa	3	3	B.1.177.9	0.003995
ORF1ab/nsp3	1198	T1198I	aCa	aTa	3	3	B.1.234	0.000396
ORF1ab/nsp3	1198	T1198I	aCa	aTa	3	3	B.1.336	0.007317
ORF1ab/nsp3	1198	T1198I	aCa	aTa	3	3	B.1.36.8	0.003
ORF1ab/nsp3	1198	T1198I	aCa	aTa	3	3	B.1.371	0.003367
ORF1ab/nsp3	1198	T1198K	aCa	aAa	3	3	B.1.396	0.002117
ORF1ab/nsp3	1198	T1198I	aCa	aTa	3	3	B.1.438.1	0.000322
ORF1ab/nsp3	1198	T1198I	aCa	aTa	3	3	B.1.560	0.013889
ORF1ab/nsp3	1198	T1198I	aCa	aTa	3	3	B.1.617.1	0.000387
ORF1ab/nsp3	1198	T1198I	aCa	aTa	3	3	B.1.628	0.001057
ORF1ab/nsp3	1198	T1198I	aCa	aTa	2	2	A.2.5	0.000998
ORF1ab/nsp3	1198	T1198T	acA	acT	2	2	AY.102	0.000053
ORF1ab/nsp3	1198	T1198S	Aca	Tca	2	2	AY.113	0.000285
ORF1ab/nsp3	1198	T1198S	Aca	Tca	2	2	AY.117	0.000169
ORF1ab/nsp3	1198	T1198I	aCa	aTa	2	2	AY.120.2.1	0.000997
ORF1ab/nsp3	1198	T1198del1	acA	ac-	2	2	AY.25	0.000012
ORF1ab/nsp3	1198	T1198I	aCa	aTa	2	2	AY.29.1	0.000441
ORF1ab/nsp3	1198	T1198A	Aca	Gca	2	2	AY.3.1	0.000171
ORF1ab/nsp3	1198	T1198K	aCa	aAa	2	2	AY.32	0.001065
ORF1ab/nsp3	1198	T1198K	aCa	aAa	2	2	AY.33	0.000134
ORF1ab/nsp3	1198	T1198T	acA	acT	2	2	AY.33	0.000134
ORF1ab/nsp3	1198	T1198T	acA	acC	2	2	AY.37	0.000632
ORF1ab/nsp3	1198	T1198K	aCa	aAa	2	2	AY.39	0.000049
ORF1ab/nsp3	1198	T1198I	aCa	aTa	2	2	AY.58	0.001815
ORF1ab/nsp3	1198	T1198K	aCa	aAa	2	2	AY.6	0.000082
ORF1ab/nsp3	1198	T1198I	aCa	aTa	2	2	AY.62	0.000871
ORF1ab/nsp3	1198	T1198I	aCa	aTa	2	2	AY.68	0.000547
ORF1ab/nsp3	1198	T1198I	aCa	aTa	2	2	AY.75.1	0.000361
ORF1ab/nsp3	1198	T1198I	aCa	aTa	2	2	AY.9	0.000135
ORF1ab/nsp3	1198	T1198T	acA	acT	2	2	AY.9.1	0.000167
ORF1ab/nsp3	1198	T1198I	aCa	aTa	2	2	AY.91	0.001461
ORF1ab/nsp3	1198	T1198I	aCa	aTa	2	2	AY.92	0.000575
ORF1ab/nsp3	1198	T1198I	aCa	aTa	2	2	AY.94	0.000885
ORF1ab/nsp3	1198	T1198I	aCa	aTa	2	2	B	0.000256
ORF1ab/nsp3	1198	T1198R	aCa	aGa	2	2	B.1	0.000018
ORF1ab/nsp3	1198	T1198P	Aca	Cca	2	2	B.1	0.000018
ORF1ab/nsp3	1198	T1198del	ACA	---	2	2	B.1	0.000018
ORF1ab/nsp3	1198	T1198K	aCa	aAa	2	2	B.1.1	0.000036
ORF1ab/nsp3	1198	T1198A	Aca	Gca	2	2	B.1.1.137	0.025
ORF1ab/nsp3	1198	T1198I	aCa	aTa	2	2	B.1.1.176	0.000879
ORF1ab/nsp3	1198	T1198I	aCa	aTa	2	2	B.1.1.28	0.000622
ORF1ab/nsp3	1198	T1198K	aCa	aAa	2	2	B.1.1.306	0.000877
ORF1ab/nsp3	1198	T1198K	aCa	aAa	2	2	B.1.1.318	0.000604
ORF1ab/nsp3	1198	T1198K	aCa	aAa	2	2	B.1.1.354	0.008772
ORF1ab/nsp3	1198	T1198I	aCa	aTa	2	2	B.1.1.417	0.005405
ORF1ab/nsp3	1198	T1198I	aCa	aTa	2	2	B.1.1.434	0.000697
ORF1ab/nsp3	1198	T1198del1	acA	ac-	2	2	B.1.1.7	0.000002
ORF1ab/nsp3	1198	T1198I	aCa	aTa	2	2	B.1.1.89	0.012121
ORF1ab/nsp3	1198	T1198T	acA	acG	2	2	B.1.160	0.000062
ORF1ab/nsp3	1198	T1198I	aCa	aTa	2	2	B.1.177.35	0.001382
ORF1ab/nsp3	1198	T1198I	aCa	aTa	2	2	B.1.177.57	0.000562
ORF1ab/nsp3	1198	T1198I	aCa	aTa	2	2	B.1.177.58	0.002663
ORF1ab/nsp3	1198	T1198K	aCa	aAa	2	2	B.1.177.81	0.000379
ORF1ab/nsp3	1198	T1198I	aCa	aTa	2	2	B.1.177.81	0.000379
ORF1ab/nsp3	1198	T1198del1	acA	ac-	2	2	B.1.2	0.000018
ORF1ab/nsp3	1198	T1198T	acA	acG	2	2	B.1.243	0.000139
ORF1ab/nsp3	1198	T1198K	aCa	aAa	2	2	B.1.258	0.000133
ORF1ab/nsp3	1198	T1198T	acA	acG	2	2	B.1.258.17	0.000208
ORF1ab/nsp3	1198	T1198I	aCa	aTa	2	2	B.1.260	0.006689
ORF1ab/nsp3	1198	T1198I	aCa	aTa	2	2	B.1.311	0.000549
ORF1ab/nsp3	1198	T1198I	aCa	aTa	2	2	B.1.346	0.002621
ORF1ab/nsp3	1198	T1198K	aCa	aAa	2	2	B.1.351	0.000059
ORF1ab/nsp3	1198	T1198K	aCa	aAa	2	2	B.1.36	0.000292
ORF1ab/nsp3	1198	T1198I	aCa	aTa	2	2	B.1.367	0.001585
ORF1ab/nsp3	1198	T1198K	aCa	aAa	2	2	B.1.369	0.00057
ORF1ab/nsp3	1198	T1198I	aCa	aTa	2	2	B.1.400	0.000858
ORF1ab/nsp3	1198	T1198I	aCa	aTa	2	2	B.1.403	0.006536
ORF1ab/nsp3	1198	T1198A	Aca	Gca	2	2	B.1.429	0.000047
ORF1ab/nsp3	1198	T1198K	aCa	aAa	2	2	B.1.429	0.000047
ORF1ab/nsp3	1198	T1198K	aCa	aAa	2	2	B.1.551	0.002581
ORF1ab/nsp3	1198	T1198I	aCa	aTa	2	2	B.1.582	0.000981
ORF1ab/nsp3	1198	T1198T	acA	acG	2	2	B.1.617.2	0.000008
ORF1ab/nsp3	1198	T1198A	Aca	Gca	2	2	B.1.621	0.000177
ORF1ab/nsp3	1198	T1198I	aCa	aTa	2	2	C.36.3	0.001134
ORF1ab/nsp3	1198	T1198T	acA	acG	2	2	C.37	0.000232
ORF1ab/nsp3	1198	T1198I	aCa	aTa	2	2	C.37.1	0.005236
ORF1ab/nsp3	1198	T1198del1	acA	ac-	2	2	P.1	0.000032
ORF1ab/nsp3	1198	T1198I	aCa	aTa	2	2	P.1.10	0.000539
ORF1ab/nsp3	1198	T1198T	acA	acG	2	2	P.1.15	0.000465
ORF1ab/nsp3	1198	T1198K	aCa	aAa	2	2	P.1.15	0.000465
ORF1ab/nsp3	1198	T1198I	aCa	aTa	2	2	P.1.15	0.000465
ORF1ab/nsp3	1198	T1198I	aCa	aTa	2	2	P.1.16	0.000748
ORF1ab/nsp3	1198	T1198K	aCa	aAa	2	2	P.1.7	0.000639
ORF1ab/nsp3	1198	T1198K	aCa	aAa	2	2	Q.3	0.00029
ORF1ab/nsp3	1198	T1198I	aCa	aTa	1	1	A.1	0.000282
ORF1ab/nsp3	1198	T1198I	aCa	aTa	1	1	A.2	0.000662
ORF1ab/nsp3	1198	T1198S	Aca	Tca	1	1	A.2	0.000662
ORF1ab/nsp3	1198	T1198K	aCa	aAa	1	1	A.2.5	0.000499
ORF1ab/nsp3	1198	T1198I	aCa	aTa	1	1	A.2.5.3	0.010309
ORF1ab/nsp3	1198	T1198I	aCa	aTa	1	1	A.5	0.001923
ORF1ab/nsp3	1198	T1198I	aCa	aTa	1	1	AH.3	0.003802
ORF1ab/nsp3	1198	T1198I	aCa	aTa	1	1	AK.1	0.012658
ORF1ab/nsp3	1198	T1198V	ACa	GTa	1	1	All	0
ORF1ab/nsp3	1198	T1198K	aCa	aAa	1	1	AU.1	0.001266
ORF1ab/nsp3	1198	T1198I	aCa	aTa	1	1	AU.3	0.00211
ORF1ab/nsp3	1198	T1198I	aCa	aTa	1	1	AY.1	0.000396
ORF1ab/nsp3	1198	T1198T	acA	acG	1	1	AY.100	0.000046
ORF1ab/nsp3	1198	T1198I	aCa	aTa	1	1	AY.101	0.00049
ORF1ab/nsp3	1198	T1198del	ACA	---	1	1	AY.101	0.00049
ORF1ab/nsp3	1198	T1198R	aCa	aGa	1	1	AY.102	0.000027
ORF1ab/nsp3	1198	T1198A	Aca	Gca	1	1	AY.102	0.000027
ORF1ab/nsp3	1198	T1198I	aCa	aTa	1	1	AY.105	0.000643
ORF1ab/nsp3	1198	T1198A	Aca	Gca	1	1	AY.105	0.000643
ORF1ab/nsp3	1198	T1198I	aCa	aTa	1	1	AY.106	0.000335
ORF1ab/nsp3	1198	T1198I	aCa	aTa	1	1	AY.108	0.001103
ORF1ab/nsp3	1198	T1198K	aCa	aAa	1	1	AY.111	0.000183
ORF1ab/nsp3	1198	T1198K	aCa	aAa	1	1	AY.119	0.000035
ORF1ab/nsp3	1198	T1198K	aCa	aAa	1	1	AY.120	0.000037
ORF1ab/nsp3	1198	T1198I	aCa	aTa	1	1	AY.120.2	0.001285
ORF1ab/nsp3	1198	T1198K	aCa	aAa	1	1	AY.14	0.000088
ORF1ab/nsp3	1198	T1198I	aCa	aTa	1	1	AY.16	0.00038
ORF1ab/nsp3	1198	T1198I	aCa	aTa	1	1	AY.16.1	0.00047
ORF1ab/nsp3	1198	T1198K	aCa	aAa	1	1	AY.2	0.000356
ORF1ab/nsp3	1198	T1198K	aCa	aAa	1	1	AY.20	0.000039
ORF1ab/nsp3	1198	T1198S	Aca	Tca	1	1	AY.20	0.000039
ORF1ab/nsp3	1198	T1198S	Aca	Tca	1	1	AY.25	0.000006
ORF1ab/nsp3	1198	T1198T	acA	acT	1	1	AY.25	0.000006
ORF1ab/nsp3	1198	T1198K	aCa	aAa	1	1	AY.26	0.000028
ORF1ab/nsp3	1198	T1198S	Aca	Tca	1	1	AY.26	0.000028
ORF1ab/nsp3	1198	T1198I	aCa	aTa	1	1	AY.27	0.000065
ORF1ab/nsp3	1198	T1198L	ACA	TTG	1	1	AY.30	0.000396
ORF1ab/nsp3	1198	T1198S	Aca	Tca	1	1	AY.30	0.000396
ORF1ab/nsp3	1198	T1198I	aCa	aTa	1	1	AY.35	0.000233
ORF1ab/nsp3	1198	T1198K	aCa	aAa	1	1	AY.35	0.000233
ORF1ab/nsp3	1198	T1198K	aCa	aAa	1	1	AY.37	0.000316
ORF1ab/nsp3	1198	T1198I	aCa	aTa	1	1	AY.37	0.000316
ORF1ab/nsp3	1198	T1198I	aCa	aTa	1	1	AY.38	0.000499
ORF1ab/nsp3	1198	T1198K	aCa	aAa	1	1	AY.39.1	0.00004
ORF1ab/nsp3	1198	T1198I	aCa	aTa	1	1	AY.39.2	0.001541
ORF1ab/nsp3	1198	T1198T	acA	acT	1	1	AY.4	0.000002
ORF1ab/nsp3	1198	T1198K	aCa	aAa	1	1	AY.42	0.00004
ORF1ab/nsp3	1198	T1198V	ACa	GTa	1	1	AY.43	0.000004
ORF1ab/nsp3	1198	T1198A	Aca	Gca	1	1	AY.43	0.000004
ORF1ab/nsp3	1198	T1198L	ACa	TTa	1	1	AY.44	0.000006
ORF1ab/nsp3	1198	T1198T	acA	acC	1	1	AY.44	0.000006
ORF1ab/nsp3	1198	T1198K	aCa	aAa	1	1	AY.45	0.000122
ORF1ab/nsp3	1198	T1198I	aCa	aTa	1	1	AY.46.2	0.000635
ORF1ab/nsp3	1198	T1198K	aCa	aAa	1	1	AY.47	0.000031
ORF1ab/nsp3	1198	T1198K	aCa	aAa	1	1	AY.48	0.000465
ORF1ab/nsp3	1198	T1198I	aCa	aTa	1	1	AY.49	0.003195
ORF1ab/nsp3	1198	T1198K	aCa	aAa	1	1	AY.5	0.000021
ORF1ab/nsp3	1198	T1198I	aCa	aTa	1	1	AY.51	0.000909
ORF1ab/nsp3	1198	T1198K	aCa	aAa	1	1	AY.62	0.000436
ORF1ab/nsp3	1198	T1198del	ACA	---	1	1	AY.66	0.00107
ORF1ab/nsp3	1198	T1198P	Aca	Cca	1	1	AY.7.2	0.000559
ORF1ab/nsp3	1198	T1198I	aCa	aTa	1	1	AY.73	0.000665
ORF1ab/nsp3	1198	T1198R	aCa	aGa	1	1	AY.75	0.000056
ORF1ab/nsp3	1198	T1198I	aCa	aTa	1	1	AY.77	0.001127
ORF1ab/nsp3	1198	T1198K	aCa	aAa	1	1	AY.79	0.001211
ORF1ab/nsp3	1198	T1198I	aCa	aTa	1	1	AY.82	0.001357
ORF1ab/nsp3	1198	T1198del	ACA	---	1	1	AY.85	0.000427
ORF1ab/nsp3	1198	T1198A	Aca	Gca	1	1	AY.9	0.000068
ORF1ab/nsp3	1198	T1198I	aCa	aTa	1	1	AY.9.1	0.000084
ORF1ab/nsp3	1198	T1198K	aCa	aAa	1	1	AY.9.1	0.000084
ORF1ab/nsp3	1198	T1198P	Aca	Cca	1	1	AY.9.2	0.000037
ORF1ab/nsp3	1198	T1198A	Aca	Gca	1	1	AY.98	0.000079
ORF1ab/nsp3	1198	T1198K	aCa	aAa	1	1	AY.98	0.000079
ORF1ab/nsp3	1198	T1198del	ACA	---	1	1	AY.99	0.001049
ORF1ab/nsp3	1198	T1198K	aCa	aAa	1	1	AZ.2	0.000821
ORF1ab/nsp3	1198	T1198T	acA	acG	1	1	B	0.000128
ORF1ab/nsp3	1198	T1198K	aCa	aAa	1	1	B.1.1.1	0.000327
ORF1ab/nsp3	1198	T1198I	aCa	aTa	1	1	B.1.1.1	0.000327
ORF1ab/nsp3	1198	T1198K	aCa	aAa	1	1	B.1.1.161	0.003534
ORF1ab/nsp3	1198	T1198I	aCa	aTa	1	1	B.1.1.200	0.007463
ORF1ab/nsp3	1198	T1198I	aCa	aTa	1	1	B.1.1.207	0.001182
ORF1ab/nsp3	1198	T1198I	aCa	aTa	1	1	B.1.1.220	0.001859
ORF1ab/nsp3	1198	T1198L	ACa	CTa	1	1	B.1.1.222	0.000204
ORF1ab/nsp3	1198	T1198I	aCa	aTa	1	1	B.1.1.25	0.000569
ORF1ab/nsp3	1198	T1198I	aCa	aTa	1	1	B.1.1.265	0.003155
ORF1ab/nsp3	1198	T1198I	aCa	aTa	1	1	B.1.1.274	0.005051
ORF1ab/nsp3	1198	T1198I	aCa	aTa	1	1	B.1.1.277	0.000759
ORF1ab/nsp3	1198	T1198I	aCa	aTa	1	1	B.1.1.306	0.000438
ORF1ab/nsp3	1198	T1198del	ACA	---	1	1	B.1.1.315	0.008475
ORF1ab/nsp3	1198	T1198I	aCa	aTa	1	1	B.1.1.322	0.008772
ORF1ab/nsp3	1198	T1198I	aCa	aTa	1	1	B.1.1.33	0.000421
ORF1ab/nsp3	1198	T1198I	aCa	aTa	1	1	B.1.1.338	0.017241
ORF1ab/nsp3	1198	T1198del	ACA	---	1	1	B.1.1.348	0.000796
ORF1ab/nsp3	1198	T1198I	aCa	aTa	1	1	B.1.1.366	0.015873
ORF1ab/nsp3	1198	T1198I	aCa	aTa	1	1	B.1.1.372	0.000689
ORF1ab/nsp3	1198	T1198I	aCa	aTa	1	1	B.1.1.374	0.002375
ORF1ab/nsp3	1198	T1198K	aCa	aAa	1	1	B.1.1.389	0.006061
ORF1ab/nsp3	1198	T1198A	Aca	Gca	1	1	B.1.1.402	0.011111
ORF1ab/nsp3	1198	T1198I	aCa	aTa	1	1	B.1.1.409	0.002833
ORF1ab/nsp3	1198	T1198A	Aca	Gca	1	1	B.1.1.409	0.002833
ORF1ab/nsp3	1198	T1198I	aCa	aTa	1	1	B.1.1.440	0.011765
ORF1ab/nsp3	1198	T1198K	aCa	aAa	1	1	B.1.1.46	0.004367
ORF1ab/nsp3	1198	T1198T	acA	acG	1	1	B.1.1.519	0.00004
ORF1ab/nsp3	1198	T1198A	Aca	Gca	1	1	B.1.1.519	0.00004
ORF1ab/nsp3	1198	T1198I	aCa	aTa	1	1	B.1.1.521	0.005348
ORF1ab/nsp3	1198	T1198I	aCa	aTa	1	1	B.1.1.523	0.001563
ORF1ab/nsp3	1198	T1198I	aCa	aTa	1	1	B.1.1.525	0.005464
ORF1ab/nsp3	1198	T1198I	aCa	aTa	1	1	B.1.1.54	0.003021
ORF1ab/nsp3	1198	T1198I	aCa	aTa	1	1	B.1.1.63	0.000386
ORF1ab/nsp3	1198	T1198I	aCa	aTa	1	1	B.1.1.70	0.000341
ORF1ab/nsp3	1198	T1198I	aCa	aTa	1	1	B.1.1.71	0.006061
ORF1ab/nsp3	1198	T1198I	aCa	aTa	1	1	B.1.111	0.001175
ORF1ab/nsp3	1198	T1198I	aCa	aTa	1	1	B.1.116	0.011628
ORF1ab/nsp3	1198	T1198K	aCa	aAa	1	1	B.1.128	0.000635
ORF1ab/nsp3	1198	T1198I	aCa	aTa	1	1	B.1.157	0.002985
ORF1ab/nsp3	1198	T1198I	aCa	aTa	1	1	B.1.160.16	0.000929
ORF1ab/nsp3	1198	T1198A	Aca	Gca	1	1	B.1.177	0.000013
ORF1ab/nsp3	1198	T1198del	ACA	---	1	1	B.1.177	0.000013
ORF1ab/nsp3	1198	T1198I	aCa	aTa	1	1	B.1.177.10	0.000878
ORF1ab/nsp3	1198	T1198I	aCa	aTa	1	1	B.1.177.11	0.001698
ORF1ab/nsp3	1198	T1198del1	aCa	a-a	1	1	B.1.177.12	0.000152
ORF1ab/nsp3	1198	T1198I	aCa	aTa	1	1	B.1.177.15	0.000631
ORF1ab/nsp3	1198	T1198I	aCa	aTa	1	1	B.1.177.16	0.000664
ORF1ab/nsp3	1198	T1198I	aCa	aTa	1	1	B.1.177.21	0.000076
ORF1ab/nsp3	1198	T1198I	aCa	aTa	1	1	B.1.177.32	0.00135
ORF1ab/nsp3	1198	T1198K	aCa	aAa	1	1	B.1.177.43	0.001477
ORF1ab/nsp3	1198	T1198S	Aca	Tca	1	1	B.1.177.44	0.000519
ORF1ab/nsp3	1198	T1198I	aCa	aTa	1	1	B.1.177.44	0.000519
ORF1ab/nsp3	1198	T1198del	ACA	---	1	1	B.1.177.62	0.001192
ORF1ab/nsp3	1198	T1198I	aCa	aTa	1	1	B.1.177.73	0.000566
ORF1ab/nsp3	1198	T1198I	aCa	aTa	1	1	B.1.205	0.02381
ORF1ab/nsp3	1198	T1198I	aCa	aTa	1	1	B.1.206	0.000816
ORF1ab/nsp3	1198	T1198I	aCa	aTa	1	1	B.1.210	0.002132
ORF1ab/nsp3	1198	T1198A	Aca	Gca	1	1	B.1.214.2	0.0006
ORF1ab/nsp3	1198	T1198I	aCa	aTa	1	1	B.1.218	0.005155
ORF1ab/nsp3	1198	T1198I	aCa	aTa	1	1	B.1.221.3	0.000833
ORF1ab/nsp3	1198	T1198I	aCa	aTa	1	1	B.1.232	0.000537
ORF1ab/nsp3	1198	T1198I	aCa	aTa	1	1	B.1.236	0.002053
ORF1ab/nsp3	1198	T1198K	aCa	aAa	1	1	B.1.239	0.001221
ORF1ab/nsp3	1198	T1198I	aCa	aTa	1	1	B.1.258.22	0.002667
ORF1ab/nsp3	1198	T1198K	aCa	aAa	1	1	B.1.260	0.003344
ORF1ab/nsp3	1198	T1198K	aCa	aAa	1	1	B.1.284	0.013158
ORF1ab/nsp3	1198	T1198I	aCa	aTa	1	1	B.1.338	0.008621
ORF1ab/nsp3	1198	T1198I	aCa	aTa	1	1	B.1.351.3	0.000876
ORF1ab/nsp3	1198	T1198I	aCa	aTa	1	1	B.1.357	0.009524
ORF1ab/nsp3	1198	T1198I	aCa	aTa	1	1	B.1.36.10	0.004785
ORF1ab/nsp3	1198	T1198K	aCa	aAa	1	1	B.1.36.10	0.004785
ORF1ab/nsp3	1198	T1198I	aCa	aTa	1	1	B.1.36.17	0.000494
ORF1ab/nsp3	1198	T1198I	aCa	aTa	1	1	B.1.36.36	0.000602
ORF1ab/nsp3	1198	T1198I	aCa	aTa	1	1	B.1.362.2	0.004717
ORF1ab/nsp3	1198	T1198I	aCa	aTa	1	1	B.1.396	0.000706
ORF1ab/nsp3	1198	T1198I	aCa	aTa	1	1	B.1.397	0.004854
ORF1ab/nsp3	1198	T1198del1	acA	ac-	1	1	B.1.399	0.001934
ORF1ab/nsp3	1198	T1198I	aCa	aTa	1	1	B.1.409	0.000781
ORF1ab/nsp3	1198	T1198K	aCa	aAa	1	1	B.1.411	0.003704
ORF1ab/nsp3	1198	T1198K	aCa	aAa	1	1	B.1.416	0.001269
ORF1ab/nsp3	1198	T1198I	aCa	aTa	1	1	B.1.432	0.011236
ORF1ab/nsp3	1198	T1198K	aCa	aAa	1	1	B.1.438.1	0.000107
ORF1ab/nsp3	1198	T1198P	Aca	Cca	1	1	B.1.438.1	0.000107
ORF1ab/nsp3	1198	T1198S	Aca	Tca	1	1	B.1.462	0.007246
ORF1ab/nsp3	1198	T1198I	aCa	aTa	1	1	B.1.468	0.005714
ORF1ab/nsp3	1198	T1198I	aCa	aTa	1	1	B.1.470	0.001404
ORF1ab/nsp3	1198	T1198I	aCa	aTa	1	1	B.1.517	0.000427
ORF1ab/nsp3	1198	T1198I	aCa	aTa	1	1	B.1.525	0.000113
ORF1ab/nsp3	1198	T1198K	aCa	aAa	1	1	B.1.526	0.000024
ORF1ab/nsp3	1198	T1198I	aCa	aTa	1	1	B.1.544	0.006024
ORF1ab/nsp3	1198	T1198I	aCa	aTa	1	1	B.1.588	0.00091
ORF1ab/nsp3	1198	T1198S	Aca	Tca	1	1	B.1.595	0.000261
ORF1ab/nsp3	1198	T1198T	acA	acG	1	1	B.1.596	0.000087
ORF1ab/nsp3	1198	T1198I	aCa	aTa	1	1	B.1.596.1	0.009346
ORF1ab/nsp3	1198	T1198I	aCa	aTa	1	1	B.1.605	0.005952
ORF1ab/nsp3	1198	T1198I	aCa	aTa	1	1	B.1.609	0.000479
ORF1ab/nsp3	1198	T1198I	aCa	aTa	1	1	B.1.612	0.002653
ORF1ab/nsp3	1198	T1198S	Aca	Tca	1	1	B.1.617.2	0.000004
ORF1ab/nsp3	1198	T1198I	aCa	aTa	1	1	B.1.620	0.000946
ORF1ab/nsp3	1198	T1198K	aCa	aAa	1	1	B.1.623	0.000536
ORF1ab/nsp3	1198	T1198del	ACA	---	1	1	B.1.630	0.005236
ORF1ab/nsp3	1198	T1198del1	aCa	a-a	1	1	B.1.637	0.000073
ORF1ab/nsp3	1198	T1198I	aCa	aTa	1	1	B.1.9.4	0.006135
ORF1ab/nsp3	1198	T1198I	aCa	aTa	1	1	B.11	0.005128
ORF1ab/nsp3	1198	T1198T	acA	acG	1	1	B.19	0.037037
ORF1ab/nsp3	1198	T1198T	acA	acG	1	1	B.20	0.023256
ORF1ab/nsp3	1198	T1198I	aCa	aTa	1	1	B.52	0.010101
ORF1ab/nsp3	1198	T1198I	aCa	aTa	1	1	C.1.2	0.004255
ORF1ab/nsp3	1198	T1198K	aCa	aAa	1	1	C.11	0.010638
ORF1ab/nsp3	1198	T1198I	aCa	aTa	1	1	C.14	0.004329
ORF1ab/nsp3	1198	T1198del	ACA	---	1	1	C.37	0.000116
ORF1ab/nsp3	1198	T1198I	aCa	aTa	1	1	C.40	0.027778
ORF1ab/nsp3	1198	T1198del1	acA	ac-	1	1	D.2	0.000075
ORF1ab/nsp3	1198	T1198K	aCa	aAa	1	1	D.2	0.000075
ORF1ab/nsp3	1198	T1198A	Aca	Gca	1	1	D.2	0.000075
ORF1ab/nsp3	1198	T1198I	aCa	aTa	1	1	N.3	0.005814
ORF1ab/nsp3	1198	T1198I	aCa	aTa	1	1	N.5	0.001767
ORF1ab/nsp3	1198	T1198S	Aca	Tca	1	1	P.1	0.000016
ORF1ab/nsp3	1198	T1198del	ACA	---	1	1	P.1	0.000016
ORF1ab/nsp3	1198	T1198A	Aca	Gca	1	1	P.1	0.000016
ORF1ab/nsp3	1198	T1198I	aCa	aTa	1	1	P.1.12	0.000484
ORF1ab/nsp3	1198	T1198K	aCa	aAa	1	1	P.1.13	0.000898
ORF1ab/nsp3	1198	T1198I	aCa	aTa	1	1	P.1.17	0.000162
ORF1ab/nsp3	1198	T1198K	aCa	aAa	1	1	P.1.2	0.001156
ORF1ab/nsp3	1198	T1198I	aCa	aTa	1	1	P.1.6	0.001946
ORF1ab/nsp3	1198	T1198I	aCa	aTa	1	1	P.1.7	0.000319
ORF1ab/nsp3	1198	T1198I	aCa	aTa	1	1	Q.2	0.000613
ORF1ab/nsp3	1198	T1198del	ACA	---	1	1	Q.8	0.000165

CoV-GLUE is still in development. CoV-GLUE was originally developed as part of COG-UK by Josh Singer using the GLUE framework at the MRC-University of Glasgow Centre for Virus Research (CVR). In 2021 it was redeveloped by Richard Orton to scale to the millions of genome sequences available. We acknowledge support from the MRC (MC_UU_12014/12), WT (220977/Z/20/Z) and UKRI G2P (MR/W005611/1). Please contact Richard Orton with any queries: Richard.Orton@glasgow.ac.uk

CoV-GLUE uses sequence data from GISAID. GISAID data provided via this web application is subject to GISAID's Terms and Conditions.