CoV-GLUE | Mutations | Mutation

CoV-GLUE Mutation: ORF = ORF1ab/nsp3 : CodonNum = 1198

Details of the codons used for the mutation across all lineages (CodonProp is the proportion each codon is used for this AA mutation):

ORFCodonNumMutORF1abMutMutTypeRefCodonMutCodonAACountCodonCountCodonPropGenome Position
ORF1ab/nsp31198T1198IT2016InonsynaCaaTa8183818316311-6313
ORF1ab/nsp31198T1198KT2016KnonsynaCaaAa3229322916311-6313
ORF1ab/nsp31198T1198TT2016TsynacAacG1771320.7457636311-6313
ORF1ab/nsp31198T1198TT2016TsynacAacT177340.192096311-6313
ORF1ab/nsp31198T1198TT2016TsynacAacC177110.06214696311-6313
ORF1ab/nsp31198T1198AT2016AnonsynAcaGca696916311-6313
ORF1ab/nsp31198T1198ST2016SnonsynAcaTca363616311-6313
ORF1ab/nsp31198T1198delT2016deldelACA---232316311-6313
ORF1ab/nsp31198T1198PT2016PnonsynAcaCca222216311-6313
ORF1ab/nsp31198T1198del1T2016del1delacAac-12100.8333336311-6313
ORF1ab/nsp31198T1198del1T2016del1delaCaa-a1220.1666676311-6313
ORF1ab/nsp31198T1198RT2016RnonsynaCaaGa4416311-6313
ORF1ab/nsp31198T1198LT2016LnonsynACaTTa310.3333336311-6313
ORF1ab/nsp31198T1198LT2016LnonsynACaCTa310.3333336311-6313
ORF1ab/nsp31198T1198LT2016LnonsynACATTG310.3333336311-6313
ORF1ab/nsp31198T1198VT2016VnonsynACaGTa1116311-6313

Details of the mutation no within lineages (LineageCodonProp is the proportion the codon is observed at, at this particular site, on each lineage):

ORFCodonNumMutRefCodonMutCodonCodonCountAACountLineageLineageCodonProp
ORF1ab/nsp31198T1198IaCaaTa81838183All0.001565
ORF1ab/nsp31198T1198KaCaaAa32293229All0.000618
ORF1ab/nsp31198T1198IaCaaTa15931593B.1.1.70.001426
ORF1ab/nsp31198T1198KaCaaAa11091109B.6.60.985778
ORF1ab/nsp31198T1198KaCaaAa10081008B.60.917197
ORF1ab/nsp31198T1198IaCaaTa940940B.1.617.20.003539
ORF1ab/nsp31198T1198IaCaaTa674674AY.40.001049
ORF1ab/nsp31198T1198IaCaaTa650650B.1.5240.914205
ORF1ab/nsp31198T1198IaCaaTa486486AY.430.002153
ORF1ab/nsp31198T1198IaCaaTa354354B.1.20.003117
ORF1ab/nsp31198T1198IaCaaTa307307AY.4.20.006658
ORF1ab/nsp31198T1198TacAacG132177All0.000025
ORF1ab/nsp31198T1198TacAacT34177All0.000007
ORF1ab/nsp31198T1198TacAacC11177All0.000002
ORF1ab/nsp31198T1198IaCaaTa164164AY.34.10.083631
ORF1ab/nsp31198T1198IaCaaTa161161AY.1200.005986
ORF1ab/nsp31198T1198KaCaaAa158158B.1.1.411
ORF1ab/nsp31198T1198KaCaaAa157157B.1.1.70.000141
ORF1ab/nsp31198T1198IaCaaTa129129AY.440.000785
ORF1ab/nsp31198T1198IaCaaTa125125B.1.258.170.012996
ORF1ab/nsp31198T1198KaCaaAa121121B.6.81
ORF1ab/nsp31198T1198IaCaaTa112112B.10.001026
ORF1ab/nsp31198T1198IaCaaTa111111P.10.001749
ORF1ab/nsp31198T1198KaCaaAa108108AY.40.000168
ORF1ab/nsp31198T1198IaCaaTa108108Q.30.015664
ORF1ab/nsp31198T1198IaCaaTa100100AY.1020.002651
ORF1ab/nsp31198T1198TacAacG7878AY.1030.000484
ORF1ab/nsp31198T1198IaCaaTa7777P.1.10.02446
ORF1ab/nsp31198T1198IaCaaTa7171B.1.351.20.021483
ORF1ab/nsp31198T1198AAcaGca6969All0.000013
ORF1ab/nsp31198T1198IaCaaTa6868AY.30.000676
ORF1ab/nsp31198T1198IaCaaTa6666AY.250.000397
ORF1ab/nsp31198T1198IaCaaTa6262B.1.1770.000816
ORF1ab/nsp31198T1198IaCaaTa6060B.1.36.230.983607
ORF1ab/nsp31198T1198IaCaaTa5757B.1.1.3180.0172
ORF1ab/nsp31198T1198IaCaaTa4949B.1.10.000889
ORF1ab/nsp31198T1198KaCaaAa4545B.1.20.000396
ORF1ab/nsp31198T1198IaCaaTa4545B.1.5960.003921
ORF1ab/nsp31198T1198IaCaaTa4444AY.1030.000273
ORF1ab/nsp31198T1198IaCaaTa4242AY.390.001038
ORF1ab/nsp31198T1198IaCaaTa4141AY.130.0066
ORF1ab/nsp31198T1198IaCaaTa4040AY.98.10.001937
ORF1ab/nsp31198T1198IaCaaTa4040B.1.4270.00202
ORF1ab/nsp31198T1198IaCaaTa3838B.1.1.2220.007752
ORF1ab/nsp31198T1198KaCaaAa3838B.6.11
ORF1ab/nsp31198T1198KaCaaAa3838B.6.31
ORF1ab/nsp31198T1198SAcaTca3636All0.000007
ORF1ab/nsp31198T1198KaCaaAa3636B.1.6370.002631
ORF1ab/nsp31198T1198IaCaaTa3535B.1.160.140.074153
ORF1ab/nsp31198T1198KaCaaAa3434AY.1210.004601
ORF1ab/nsp31198T1198KaCaaAa3434B.1.617.20.000128
ORF1ab/nsp31198T1198IaCaaTa3333C.260.242647
ORF1ab/nsp31198T1198IaCaaTa3131AY.460.003226
ORF1ab/nsp31198T1198IaCaaTa3131B.1.177.120.004703
ORF1ab/nsp31198T1198IaCaaTa2929B.1.1.5190.001152
ORF1ab/nsp31198T1198IaCaaTa2828AY.60.001152
ORF1ab/nsp31198T1198KaCaaAa2828B.10.000256
ORF1ab/nsp31198T1198IaCaaTa2828B.1.1600.000873
ORF1ab/nsp31198T1198IaCaaTa2727AY.1190.000953
ORF1ab/nsp31198T1198IaCaaTa2727AY.200.001049
ORF1ab/nsp31198T1198IaCaaTa2727AY.420.001086
ORF1ab/nsp31198T1198IaCaaTa2727B.1.1.2980.023276
ORF1ab/nsp31198T1198IaCaaTa2727B.1.5260.000635
ORF1ab/nsp31198T1198IaCaaTa2727B.1.6210.00239
ORF1ab/nsp31198T1198IaCaaTa2626AY.330.001736
ORF1ab/nsp31198T1198IaCaaTa2525AY.50.000516
ORF1ab/nsp31198T1198IaCaaTa2525AY.780.038521
ORF1ab/nsp31198T1198delACA---2323All0.000004
ORF1ab/nsp31198T1198IaCaaTa2323B.1.466.20.008998
ORF1ab/nsp31198T1198IaCaaTa2323B.1.6370.001681
ORF1ab/nsp31198T1198PAcaCca2222All0.000004
ORF1ab/nsp31198T1198IaCaaTa2222B.1.1.2840.002363
ORF1ab/nsp31198T1198KaCaaAa2222B.6.41
ORF1ab/nsp31198T1198KaCaaAa2121AY.1030.00013
ORF1ab/nsp31198T1198IaCaaTa2020B.1.5680.022222
ORF1ab/nsp31198T1198IaCaaTa1919B.1.3510.000565
ORF1ab/nsp31198T1198IaCaaTa1818B.1.3620.027735
ORF1ab/nsp31198T1198TacAacG1117B.1.1.70.00001
ORF1ab/nsp31198T1198TacAacT617B.1.1.70.000005
ORF1ab/nsp31198T1198IaCaaTa1616A.2.5.10.076923
ORF1ab/nsp31198T1198IaCaaTa1616AY.1180.001002
ORF1ab/nsp31198T1198IaCaaTa1616B.1.36.290.008277
ORF1ab/nsp31198T1198IaCaaTa1616B.1.4290.000376
ORF1ab/nsp31198T1198KaCaaAa1616B.6.21
ORF1ab/nsp31198T1198IaCaaTa1515B.1.2210.001065
ORF1ab/nsp31198T1198IaCaaTa1515P.1.140.000717
ORF1ab/nsp31198T1198IaCaaTa1414AY.470.000435
ORF1ab/nsp31198T1198IaCaaTa1414AY.710.006651
ORF1ab/nsp31198T1198IaCaaTa1414B.1.177.750.014568
ORF1ab/nsp31198T1198IaCaaTa1414B.1.2430.000974
ORF1ab/nsp31198T1198IaCaaTa1414B.6.60.012444
ORF1ab/nsp31198T1198IaCaaTa1414Q.80.002309
ORF1ab/nsp31198T1198IaCaaTa1313AY.9.20.000477
ORF1ab/nsp31198T1198IaCaaTa1313B.1.2580.000865
ORF1ab/nsp31198T1198del1acAac-1012All0.000002
ORF1ab/nsp31198T1198del1aCaa-a212All0
ORF1ab/nsp31198T1198IaCaaTa1212AY.100.006359
ORF1ab/nsp31198T1198AAcaGca1212AY.1030.000075
ORF1ab/nsp31198T1198IaCaaTa1212AY.230.000837
ORF1ab/nsp31198T1198KaCaaAa1212AY.250.000072
ORF1ab/nsp31198T1198IaCaaTa1212AY.290.000189
ORF1ab/nsp31198T1198KaCaaAa1212C.370.001393
ORF1ab/nsp31198T1198KaCaaAa1212P.10.000189
ORF1ab/nsp31198T1198KaCaaAa1111AY.440.000067
ORF1ab/nsp31198T1198IaCaaTa1111AZ.20.009031
ORF1ab/nsp31198T1198KaCaaAa1111B0.001406
ORF1ab/nsp31198T1198IaCaaTa1111B.1.1.3110.00394
ORF1ab/nsp31198T1198AAcaGca1111B.1.1.70.00001
ORF1ab/nsp31198T1198KaCaaAa1111B.1.177.600.002403
ORF1ab/nsp31198T1198KaCaaAa1111B.6.50.846154
ORF1ab/nsp31198T1198TacAacT1010AY.30.000099
ORF1ab/nsp31198T1198TacAacC810AY.430.000035
ORF1ab/nsp31198T1198TacAacG210AY.430.000009
ORF1ab/nsp31198T1198AAcaGca1010B.10.000092
ORF1ab/nsp31198T1198KaCaaAa1010B.1.1.2360.068966
ORF1ab/nsp31198T1198IaCaaTa1010B.1.1.500.006789
ORF1ab/nsp31198T1198KaCaaAa1010B.1.1.5190.000397
ORF1ab/nsp31198T1198SAcaTca1010B.1.1.70.000009
ORF1ab/nsp31198T1198IaCaaTa1010B.1.177.70.001649
ORF1ab/nsp31198T1198IaCaaTa1010B.1.360.001459
ORF1ab/nsp31198T1198TacAacG1010B.1.4290.000235
ORF1ab/nsp31198T1198KaCaaAa1010B.1.617.10.00129
ORF1ab/nsp31198T1198IaCaaTa99AY.3.10.000767
ORF1ab/nsp31198T1198IaCaaTa99AY.450.001095
ORF1ab/nsp31198T1198IaCaaTa99AY.740.001041
ORF1ab/nsp31198T1198TacAacG69B.10.000055
ORF1ab/nsp31198T1198TacAacT39B.10.000027
ORF1ab/nsp31198T1198PAcaCca99B.1.1.70.000008
ORF1ab/nsp31198T1198KaCaaAa99B.1.1570.026866
ORF1ab/nsp31198T1198IaCaaTa99L.30.031915
ORF1ab/nsp31198T1198KaCaaAa88AY.4.20.000174
ORF1ab/nsp31198T1198KaCaaAa88AY.430.000035
ORF1ab/nsp31198T1198PAcaCca88AY.9.10.00067
ORF1ab/nsp31198T1198IaCaaTa88B.1.1.3480.006369
ORF1ab/nsp31198T1198KaCaaAa88B.1.1600.00025
ORF1ab/nsp31198T1198IaCaaTa88B.1.3690.002282
ORF1ab/nsp31198T1198IaCaaTa88B.1.5750.002427
ORF1ab/nsp31198T1198IaCaaTa88C.360.007286
ORF1ab/nsp31198T1198IaCaaTa88C.370.000929
ORF1ab/nsp31198T1198IaCaaTa77AY.1100.000789
ORF1ab/nsp31198T1198IaCaaTa77AY.1110.001282
ORF1ab/nsp31198T1198IaCaaTa77AY.39.10.000277
ORF1ab/nsp31198T1198IaCaaTa77AY.46.40.001152
ORF1ab/nsp31198T1198IaCaaTa77AY.5.30.002362
ORF1ab/nsp31198T1198IaCaaTa77AY.610.000733
ORF1ab/nsp31198T1198IaCaaTa77AY.750.000392
ORF1ab/nsp31198T1198IaCaaTa77B.1.1.370.00135
ORF1ab/nsp31198T1198SAcaTca77B.1.360.001021
ORF1ab/nsp31198T1198IaCaaTa77B.1.5950.001827
ORF1ab/nsp31198T1198IaCaaTa77Q.10.000884
ORF1ab/nsp31198T1198IaCaaTa66A.270.009934
ORF1ab/nsp31198T1198IaCaaTa66AY.260.00017
ORF1ab/nsp31198T1198IaCaaTa66AY.300.002374
ORF1ab/nsp31198T1198IaCaaTa66AY.360.000889
ORF1ab/nsp31198T1198AAcaGca66AY.40.000009
ORF1ab/nsp31198T1198IaCaaTa66B.1.1.3170.00247
ORF1ab/nsp31198T1198IaCaaTa66B.1.1460.025424
ORF1ab/nsp31198T1198IaCaaTa66B.1.221.10.017442
ORF1ab/nsp31198T1198AAcaGca66B.1.5260.000141
ORF1ab/nsp31198T1198IaCaaTa55AY.1000.00023
ORF1ab/nsp31198T1198IaCaaTa55AY.1170.000423
ORF1ab/nsp31198T1198IaCaaTa55AY.120.00158
ORF1ab/nsp31198T1198TacAacT55AY.290.000079
ORF1ab/nsp31198T1198SAcaTca55AY.40.000008
ORF1ab/nsp31198T1198IaCaaTa55AY.4.2.10.000745
ORF1ab/nsp31198T1198KaCaaAa55AY.760.024155
ORF1ab/nsp31198T1198IaCaaTa55AY.880.004421
ORF1ab/nsp31198T1198IaCaaTa55AY.980.000395
ORF1ab/nsp31198T1198delACA---55B.1.1.70.000004
ORF1ab/nsp31198T1198IaCaaTa55B.1.177.330.008224
ORF1ab/nsp31198T1198RaCaaGa44All0.000001
ORF1ab/nsp31198T1198KaCaaAa44AY.1000.000184
ORF1ab/nsp31198T1198IaCaaTa44AY.1130.00057
ORF1ab/nsp31198T1198KaCaaAa44AY.1180.000251
ORF1ab/nsp31198T1198delACA---44AY.250.000024
ORF1ab/nsp31198T1198IaCaaTa44AY.340.000388
ORF1ab/nsp31198T1198AAcaGca44AY.440.000024
ORF1ab/nsp31198T1198IaCaaTa44AY.46.60.000289
ORF1ab/nsp31198T1198KaCaaAa44AY.710.0019
ORF1ab/nsp31198T1198IaCaaTa44AY.850.001709
ORF1ab/nsp31198T1198IaCaaTa44B.1.1610.068966
ORF1ab/nsp31198T1198IaCaaTa44B.1.177.60.003906
ORF1ab/nsp31198T1198IaCaaTa44B.1.2400.000862
ORF1ab/nsp31198T1198KaCaaAa44B.1.240.10.1
ORF1ab/nsp31198T1198IaCaaTa44B.1.6270.008081
ORF1ab/nsp31198T1198IaCaaTa44B.400.001457
ORF1ab/nsp31198T1198IaCaaTa44D.20.0003
ORF1ab/nsp31198T1198IaCaaTa44P.20.000747
ORF1ab/nsp31198T1198KaCaaAa33A0.001161
ORF1ab/nsp31198T1198IaCaaTa33A.23.10.002113
ORF1ab/nsp31198T1198LACATTG13All0
ORF1ab/nsp31198T1198LACaTTa13All0
ORF1ab/nsp31198T1198LACaCTa13All0
ORF1ab/nsp31198T1198IaCaaTa33AY.1160.00086
ORF1ab/nsp31198T1198IaCaaTa33AY.1210.000406
ORF1ab/nsp31198T1198KaCaaAa33AY.230.000209
ORF1ab/nsp31198T1198KaCaaAa33AY.30.00003
ORF1ab/nsp31198T1198IaCaaTa33AY.4.50.000322
ORF1ab/nsp31198T1198KaCaaAa33AY.460.000312
ORF1ab/nsp31198T1198IaCaaTa33AY.5.40.00083
ORF1ab/nsp31198T1198TacAacG33AY.570.001969
ORF1ab/nsp31198T1198IaCaaTa33AY.950.002283
ORF1ab/nsp31198T1198IaCaaTa33AY.990.003148
ORF1ab/nsp31198T1198IaCaaTa33B.1.1.2140.000166
ORF1ab/nsp31198T1198TacAacG33B.1.1.2160.002671
ORF1ab/nsp31198T1198IaCaaTa33B.1.1.4860.004732
ORF1ab/nsp31198T1198TacAacT23B.1.1770.000026
ORF1ab/nsp31198T1198TacAacG13B.1.1770.000013
ORF1ab/nsp31198T1198IaCaaTa33B.1.177.600.000655
ORF1ab/nsp31198T1198IaCaaTa33B.1.177.650.001996
ORF1ab/nsp31198T1198IaCaaTa33B.1.177.90.003995
ORF1ab/nsp31198T1198IaCaaTa33B.1.2340.000396
ORF1ab/nsp31198T1198IaCaaTa33B.1.3360.007317
ORF1ab/nsp31198T1198IaCaaTa33B.1.36.80.003
ORF1ab/nsp31198T1198IaCaaTa33B.1.3710.003367
ORF1ab/nsp31198T1198KaCaaAa33B.1.3960.002117
ORF1ab/nsp31198T1198IaCaaTa33B.1.438.10.000322
ORF1ab/nsp31198T1198IaCaaTa33B.1.5600.013889
ORF1ab/nsp31198T1198IaCaaTa33B.1.617.10.000387
ORF1ab/nsp31198T1198IaCaaTa33B.1.6280.001057
ORF1ab/nsp31198T1198IaCaaTa22A.2.50.000998
ORF1ab/nsp31198T1198TacAacT22AY.1020.000053
ORF1ab/nsp31198T1198SAcaTca22AY.1130.000285
ORF1ab/nsp31198T1198SAcaTca22AY.1170.000169
ORF1ab/nsp31198T1198IaCaaTa22AY.120.2.10.000997
ORF1ab/nsp31198T1198del1acAac-22AY.250.000012
ORF1ab/nsp31198T1198IaCaaTa22AY.29.10.000441
ORF1ab/nsp31198T1198AAcaGca22AY.3.10.000171
ORF1ab/nsp31198T1198KaCaaAa22AY.320.001065
ORF1ab/nsp31198T1198KaCaaAa22AY.330.000134
ORF1ab/nsp31198T1198TacAacT22AY.330.000134
ORF1ab/nsp31198T1198TacAacC22AY.370.000632
ORF1ab/nsp31198T1198KaCaaAa22AY.390.000049
ORF1ab/nsp31198T1198IaCaaTa22AY.580.001815
ORF1ab/nsp31198T1198KaCaaAa22AY.60.000082
ORF1ab/nsp31198T1198IaCaaTa22AY.620.000871
ORF1ab/nsp31198T1198IaCaaTa22AY.680.000547
ORF1ab/nsp31198T1198IaCaaTa22AY.75.10.000361
ORF1ab/nsp31198T1198IaCaaTa22AY.90.000135
ORF1ab/nsp31198T1198TacAacT22AY.9.10.000167
ORF1ab/nsp31198T1198IaCaaTa22AY.910.001461
ORF1ab/nsp31198T1198IaCaaTa22AY.920.000575
ORF1ab/nsp31198T1198IaCaaTa22AY.940.000885
ORF1ab/nsp31198T1198IaCaaTa22B0.000256
ORF1ab/nsp31198T1198RaCaaGa22B.10.000018
ORF1ab/nsp31198T1198PAcaCca22B.10.000018
ORF1ab/nsp31198T1198delACA---22B.10.000018
ORF1ab/nsp31198T1198KaCaaAa22B.1.10.000036
ORF1ab/nsp31198T1198AAcaGca22B.1.1.1370.025
ORF1ab/nsp31198T1198IaCaaTa22B.1.1.1760.000879
ORF1ab/nsp31198T1198IaCaaTa22B.1.1.280.000622
ORF1ab/nsp31198T1198KaCaaAa22B.1.1.3060.000877
ORF1ab/nsp31198T1198KaCaaAa22B.1.1.3180.000604
ORF1ab/nsp31198T1198KaCaaAa22B.1.1.3540.008772
ORF1ab/nsp31198T1198IaCaaTa22B.1.1.4170.005405
ORF1ab/nsp31198T1198IaCaaTa22B.1.1.4340.000697
ORF1ab/nsp31198T1198del1acAac-22B.1.1.70.000002
ORF1ab/nsp31198T1198IaCaaTa22B.1.1.890.012121
ORF1ab/nsp31198T1198TacAacG22B.1.1600.000062
ORF1ab/nsp31198T1198IaCaaTa22B.1.177.350.001382
ORF1ab/nsp31198T1198IaCaaTa22B.1.177.570.000562
ORF1ab/nsp31198T1198IaCaaTa22B.1.177.580.002663
ORF1ab/nsp31198T1198KaCaaAa22B.1.177.810.000379
ORF1ab/nsp31198T1198IaCaaTa22B.1.177.810.000379
ORF1ab/nsp31198T1198del1acAac-22B.1.20.000018
ORF1ab/nsp31198T1198TacAacG22B.1.2430.000139
ORF1ab/nsp31198T1198KaCaaAa22B.1.2580.000133
ORF1ab/nsp31198T1198TacAacG22B.1.258.170.000208
ORF1ab/nsp31198T1198IaCaaTa22B.1.2600.006689
ORF1ab/nsp31198T1198IaCaaTa22B.1.3110.000549
ORF1ab/nsp31198T1198IaCaaTa22B.1.3460.002621
ORF1ab/nsp31198T1198KaCaaAa22B.1.3510.000059
ORF1ab/nsp31198T1198KaCaaAa22B.1.360.000292
ORF1ab/nsp31198T1198IaCaaTa22B.1.3670.001585
ORF1ab/nsp31198T1198KaCaaAa22B.1.3690.00057
ORF1ab/nsp31198T1198IaCaaTa22B.1.4000.000858
ORF1ab/nsp31198T1198IaCaaTa22B.1.4030.006536
ORF1ab/nsp31198T1198AAcaGca22B.1.4290.000047
ORF1ab/nsp31198T1198KaCaaAa22B.1.4290.000047
ORF1ab/nsp31198T1198KaCaaAa22B.1.5510.002581
ORF1ab/nsp31198T1198IaCaaTa22B.1.5820.000981
ORF1ab/nsp31198T1198TacAacG22B.1.617.20.000008
ORF1ab/nsp31198T1198AAcaGca22B.1.6210.000177
ORF1ab/nsp31198T1198IaCaaTa22C.36.30.001134
ORF1ab/nsp31198T1198TacAacG22C.370.000232
ORF1ab/nsp31198T1198IaCaaTa22C.37.10.005236
ORF1ab/nsp31198T1198del1acAac-22P.10.000032
ORF1ab/nsp31198T1198IaCaaTa22P.1.100.000539
ORF1ab/nsp31198T1198TacAacG22P.1.150.000465
ORF1ab/nsp31198T1198KaCaaAa22P.1.150.000465
ORF1ab/nsp31198T1198IaCaaTa22P.1.150.000465
ORF1ab/nsp31198T1198IaCaaTa22P.1.160.000748
ORF1ab/nsp31198T1198KaCaaAa22P.1.70.000639
ORF1ab/nsp31198T1198KaCaaAa22Q.30.00029
ORF1ab/nsp31198T1198IaCaaTa11A.10.000282
ORF1ab/nsp31198T1198IaCaaTa11A.20.000662
ORF1ab/nsp31198T1198SAcaTca11A.20.000662
ORF1ab/nsp31198T1198KaCaaAa11A.2.50.000499
ORF1ab/nsp31198T1198IaCaaTa11A.2.5.30.010309
ORF1ab/nsp31198T1198IaCaaTa11A.50.001923
ORF1ab/nsp31198T1198IaCaaTa11AH.30.003802
ORF1ab/nsp31198T1198IaCaaTa11AK.10.012658
ORF1ab/nsp31198T1198VACaGTa11All0
ORF1ab/nsp31198T1198KaCaaAa11AU.10.001266
ORF1ab/nsp31198T1198IaCaaTa11AU.30.00211
ORF1ab/nsp31198T1198IaCaaTa11AY.10.000396
ORF1ab/nsp31198T1198TacAacG11AY.1000.000046
ORF1ab/nsp31198T1198IaCaaTa11AY.1010.00049
ORF1ab/nsp31198T1198delACA---11AY.1010.00049
ORF1ab/nsp31198T1198RaCaaGa11AY.1020.000027
ORF1ab/nsp31198T1198AAcaGca11AY.1020.000027
ORF1ab/nsp31198T1198IaCaaTa11AY.1050.000643
ORF1ab/nsp31198T1198AAcaGca11AY.1050.000643
ORF1ab/nsp31198T1198IaCaaTa11AY.1060.000335
ORF1ab/nsp31198T1198IaCaaTa11AY.1080.001103
ORF1ab/nsp31198T1198KaCaaAa11AY.1110.000183
ORF1ab/nsp31198T1198KaCaaAa11AY.1190.000035
ORF1ab/nsp31198T1198KaCaaAa11AY.1200.000037
ORF1ab/nsp31198T1198IaCaaTa11AY.120.20.001285
ORF1ab/nsp31198T1198KaCaaAa11AY.140.000088
ORF1ab/nsp31198T1198IaCaaTa11AY.160.00038
ORF1ab/nsp31198T1198IaCaaTa11AY.16.10.00047
ORF1ab/nsp31198T1198KaCaaAa11AY.20.000356
ORF1ab/nsp31198T1198KaCaaAa11AY.200.000039
ORF1ab/nsp31198T1198SAcaTca11AY.200.000039
ORF1ab/nsp31198T1198SAcaTca11AY.250.000006
ORF1ab/nsp31198T1198TacAacT11AY.250.000006
ORF1ab/nsp31198T1198KaCaaAa11AY.260.000028
ORF1ab/nsp31198T1198SAcaTca11AY.260.000028
ORF1ab/nsp31198T1198IaCaaTa11AY.270.000065
ORF1ab/nsp31198T1198LACATTG11AY.300.000396
ORF1ab/nsp31198T1198SAcaTca11AY.300.000396
ORF1ab/nsp31198T1198IaCaaTa11AY.350.000233
ORF1ab/nsp31198T1198KaCaaAa11AY.350.000233
ORF1ab/nsp31198T1198KaCaaAa11AY.370.000316
ORF1ab/nsp31198T1198IaCaaTa11AY.370.000316
ORF1ab/nsp31198T1198IaCaaTa11AY.380.000499
ORF1ab/nsp31198T1198KaCaaAa11AY.39.10.00004
ORF1ab/nsp31198T1198IaCaaTa11AY.39.20.001541
ORF1ab/nsp31198T1198TacAacT11AY.40.000002
ORF1ab/nsp31198T1198KaCaaAa11AY.420.00004
ORF1ab/nsp31198T1198VACaGTa11AY.430.000004
ORF1ab/nsp31198T1198AAcaGca11AY.430.000004
ORF1ab/nsp31198T1198LACaTTa11AY.440.000006
ORF1ab/nsp31198T1198TacAacC11AY.440.000006
ORF1ab/nsp31198T1198KaCaaAa11AY.450.000122
ORF1ab/nsp31198T1198IaCaaTa11AY.46.20.000635
ORF1ab/nsp31198T1198KaCaaAa11AY.470.000031
ORF1ab/nsp31198T1198KaCaaAa11AY.480.000465
ORF1ab/nsp31198T1198IaCaaTa11AY.490.003195
ORF1ab/nsp31198T1198KaCaaAa11AY.50.000021
ORF1ab/nsp31198T1198IaCaaTa11AY.510.000909
ORF1ab/nsp31198T1198KaCaaAa11AY.620.000436
ORF1ab/nsp31198T1198delACA---11AY.660.00107
ORF1ab/nsp31198T1198PAcaCca11AY.7.20.000559
ORF1ab/nsp31198T1198IaCaaTa11AY.730.000665
ORF1ab/nsp31198T1198RaCaaGa11AY.750.000056
ORF1ab/nsp31198T1198IaCaaTa11AY.770.001127
ORF1ab/nsp31198T1198KaCaaAa11AY.790.001211
ORF1ab/nsp31198T1198IaCaaTa11AY.820.001357
ORF1ab/nsp31198T1198delACA---11AY.850.000427
ORF1ab/nsp31198T1198AAcaGca11AY.90.000068
ORF1ab/nsp31198T1198IaCaaTa11AY.9.10.000084
ORF1ab/nsp31198T1198KaCaaAa11AY.9.10.000084
ORF1ab/nsp31198T1198PAcaCca11AY.9.20.000037
ORF1ab/nsp31198T1198AAcaGca11AY.980.000079
ORF1ab/nsp31198T1198KaCaaAa11AY.980.000079
ORF1ab/nsp31198T1198delACA---11AY.990.001049
ORF1ab/nsp31198T1198KaCaaAa11AZ.20.000821
ORF1ab/nsp31198T1198TacAacG11B0.000128
ORF1ab/nsp31198T1198KaCaaAa11B.1.1.10.000327
ORF1ab/nsp31198T1198IaCaaTa11B.1.1.10.000327
ORF1ab/nsp31198T1198KaCaaAa11B.1.1.1610.003534
ORF1ab/nsp31198T1198IaCaaTa11B.1.1.2000.007463
ORF1ab/nsp31198T1198IaCaaTa11B.1.1.2070.001182
ORF1ab/nsp31198T1198IaCaaTa11B.1.1.2200.001859
ORF1ab/nsp31198T1198LACaCTa11B.1.1.2220.000204
ORF1ab/nsp31198T1198IaCaaTa11B.1.1.250.000569
ORF1ab/nsp31198T1198IaCaaTa11B.1.1.2650.003155
ORF1ab/nsp31198T1198IaCaaTa11B.1.1.2740.005051
ORF1ab/nsp31198T1198IaCaaTa11B.1.1.2770.000759
ORF1ab/nsp31198T1198IaCaaTa11B.1.1.3060.000438
ORF1ab/nsp31198T1198delACA---11B.1.1.3150.008475
ORF1ab/nsp31198T1198IaCaaTa11B.1.1.3220.008772
ORF1ab/nsp31198T1198IaCaaTa11B.1.1.330.000421
ORF1ab/nsp31198T1198IaCaaTa11B.1.1.3380.017241
ORF1ab/nsp31198T1198delACA---11B.1.1.3480.000796
ORF1ab/nsp31198T1198IaCaaTa11B.1.1.3660.015873
ORF1ab/nsp31198T1198IaCaaTa11B.1.1.3720.000689
ORF1ab/nsp31198T1198IaCaaTa11B.1.1.3740.002375
ORF1ab/nsp31198T1198KaCaaAa11B.1.1.3890.006061
ORF1ab/nsp31198T1198AAcaGca11B.1.1.4020.011111
ORF1ab/nsp31198T1198IaCaaTa11B.1.1.4090.002833
ORF1ab/nsp31198T1198AAcaGca11B.1.1.4090.002833
ORF1ab/nsp31198T1198IaCaaTa11B.1.1.4400.011765
ORF1ab/nsp31198T1198KaCaaAa11B.1.1.460.004367
ORF1ab/nsp31198T1198TacAacG11B.1.1.5190.00004
ORF1ab/nsp31198T1198AAcaGca11B.1.1.5190.00004
ORF1ab/nsp31198T1198IaCaaTa11B.1.1.5210.005348
ORF1ab/nsp31198T1198IaCaaTa11B.1.1.5230.001563
ORF1ab/nsp31198T1198IaCaaTa11B.1.1.5250.005464
ORF1ab/nsp31198T1198IaCaaTa11B.1.1.540.003021
ORF1ab/nsp31198T1198IaCaaTa11B.1.1.630.000386
ORF1ab/nsp31198T1198IaCaaTa11B.1.1.700.000341
ORF1ab/nsp31198T1198IaCaaTa11B.1.1.710.006061
ORF1ab/nsp31198T1198IaCaaTa11B.1.1110.001175
ORF1ab/nsp31198T1198IaCaaTa11B.1.1160.011628
ORF1ab/nsp31198T1198KaCaaAa11B.1.1280.000635
ORF1ab/nsp31198T1198IaCaaTa11B.1.1570.002985
ORF1ab/nsp31198T1198IaCaaTa11B.1.160.160.000929
ORF1ab/nsp31198T1198AAcaGca11B.1.1770.000013
ORF1ab/nsp31198T1198delACA---11B.1.1770.000013
ORF1ab/nsp31198T1198IaCaaTa11B.1.177.100.000878
ORF1ab/nsp31198T1198IaCaaTa11B.1.177.110.001698
ORF1ab/nsp31198T1198del1aCaa-a11B.1.177.120.000152
ORF1ab/nsp31198T1198IaCaaTa11B.1.177.150.000631
ORF1ab/nsp31198T1198IaCaaTa11B.1.177.160.000664
ORF1ab/nsp31198T1198IaCaaTa11B.1.177.210.000076
ORF1ab/nsp31198T1198IaCaaTa11B.1.177.320.00135
ORF1ab/nsp31198T1198KaCaaAa11B.1.177.430.001477
ORF1ab/nsp31198T1198SAcaTca11B.1.177.440.000519
ORF1ab/nsp31198T1198IaCaaTa11B.1.177.440.000519
ORF1ab/nsp31198T1198delACA---11B.1.177.620.001192
ORF1ab/nsp31198T1198IaCaaTa11B.1.177.730.000566
ORF1ab/nsp31198T1198IaCaaTa11B.1.2050.02381
ORF1ab/nsp31198T1198IaCaaTa11B.1.2060.000816
ORF1ab/nsp31198T1198IaCaaTa11B.1.2100.002132
ORF1ab/nsp31198T1198AAcaGca11B.1.214.20.0006
ORF1ab/nsp31198T1198IaCaaTa11B.1.2180.005155
ORF1ab/nsp31198T1198IaCaaTa11B.1.221.30.000833
ORF1ab/nsp31198T1198IaCaaTa11B.1.2320.000537
ORF1ab/nsp31198T1198IaCaaTa11B.1.2360.002053
ORF1ab/nsp31198T1198KaCaaAa11B.1.2390.001221
ORF1ab/nsp31198T1198IaCaaTa11B.1.258.220.002667
ORF1ab/nsp31198T1198KaCaaAa11B.1.2600.003344
ORF1ab/nsp31198T1198KaCaaAa11B.1.2840.013158
ORF1ab/nsp31198T1198IaCaaTa11B.1.3380.008621
ORF1ab/nsp31198T1198IaCaaTa11B.1.351.30.000876
ORF1ab/nsp31198T1198IaCaaTa11B.1.3570.009524
ORF1ab/nsp31198T1198IaCaaTa11B.1.36.100.004785
ORF1ab/nsp31198T1198KaCaaAa11B.1.36.100.004785
ORF1ab/nsp31198T1198IaCaaTa11B.1.36.170.000494
ORF1ab/nsp31198T1198IaCaaTa11B.1.36.360.000602
ORF1ab/nsp31198T1198IaCaaTa11B.1.362.20.004717
ORF1ab/nsp31198T1198IaCaaTa11B.1.3960.000706
ORF1ab/nsp31198T1198IaCaaTa11B.1.3970.004854
ORF1ab/nsp31198T1198del1acAac-11B.1.3990.001934
ORF1ab/nsp31198T1198IaCaaTa11B.1.4090.000781
ORF1ab/nsp31198T1198KaCaaAa11B.1.4110.003704
ORF1ab/nsp31198T1198KaCaaAa11B.1.4160.001269
ORF1ab/nsp31198T1198IaCaaTa11B.1.4320.011236
ORF1ab/nsp31198T1198KaCaaAa11B.1.438.10.000107
ORF1ab/nsp31198T1198PAcaCca11B.1.438.10.000107
ORF1ab/nsp31198T1198SAcaTca11B.1.4620.007246
ORF1ab/nsp31198T1198IaCaaTa11B.1.4680.005714
ORF1ab/nsp31198T1198IaCaaTa11B.1.4700.001404
ORF1ab/nsp31198T1198IaCaaTa11B.1.5170.000427
ORF1ab/nsp31198T1198IaCaaTa11B.1.5250.000113
ORF1ab/nsp31198T1198KaCaaAa11B.1.5260.000024
ORF1ab/nsp31198T1198IaCaaTa11B.1.5440.006024
ORF1ab/nsp31198T1198IaCaaTa11B.1.5880.00091
ORF1ab/nsp31198T1198SAcaTca11B.1.5950.000261
ORF1ab/nsp31198T1198TacAacG11B.1.5960.000087
ORF1ab/nsp31198T1198IaCaaTa11B.1.596.10.009346
ORF1ab/nsp31198T1198IaCaaTa11B.1.6050.005952
ORF1ab/nsp31198T1198IaCaaTa11B.1.6090.000479
ORF1ab/nsp31198T1198IaCaaTa11B.1.6120.002653
ORF1ab/nsp31198T1198SAcaTca11B.1.617.20.000004
ORF1ab/nsp31198T1198IaCaaTa11B.1.6200.000946
ORF1ab/nsp31198T1198KaCaaAa11B.1.6230.000536
ORF1ab/nsp31198T1198delACA---11B.1.6300.005236
ORF1ab/nsp31198T1198del1aCaa-a11B.1.6370.000073
ORF1ab/nsp31198T1198IaCaaTa11B.1.9.40.006135
ORF1ab/nsp31198T1198IaCaaTa11B.110.005128
ORF1ab/nsp31198T1198TacAacG11B.190.037037
ORF1ab/nsp31198T1198TacAacG11B.200.023256
ORF1ab/nsp31198T1198IaCaaTa11B.520.010101
ORF1ab/nsp31198T1198IaCaaTa11C.1.20.004255
ORF1ab/nsp31198T1198KaCaaAa11C.110.010638
ORF1ab/nsp31198T1198IaCaaTa11C.140.004329
ORF1ab/nsp31198T1198delACA---11C.370.000116
ORF1ab/nsp31198T1198IaCaaTa11C.400.027778
ORF1ab/nsp31198T1198del1acAac-11D.20.000075
ORF1ab/nsp31198T1198KaCaaAa11D.20.000075
ORF1ab/nsp31198T1198AAcaGca11D.20.000075
ORF1ab/nsp31198T1198IaCaaTa11N.30.005814
ORF1ab/nsp31198T1198IaCaaTa11N.50.001767
ORF1ab/nsp31198T1198SAcaTca11P.10.000016
ORF1ab/nsp31198T1198delACA---11P.10.000016
ORF1ab/nsp31198T1198AAcaGca11P.10.000016
ORF1ab/nsp31198T1198IaCaaTa11P.1.120.000484
ORF1ab/nsp31198T1198KaCaaAa11P.1.130.000898
ORF1ab/nsp31198T1198IaCaaTa11P.1.170.000162
ORF1ab/nsp31198T1198KaCaaAa11P.1.20.001156
ORF1ab/nsp31198T1198IaCaaTa11P.1.60.001946
ORF1ab/nsp31198T1198IaCaaTa11P.1.70.000319
ORF1ab/nsp31198T1198IaCaaTa11Q.20.000613
ORF1ab/nsp31198T1198delACA---11Q.80.000165