CoV-GLUE | Mutations | Mutation
Details of the codons used for the mutation across all lineages (CodonProp is the proportion each codon is used for this AA mutation):
ORF | CodonNum | Mut | ORF1abMut | MutType | RefCodon | MutCodon | AACount | CodonCount | CodonProp | Genome Position |
ORF1ab/nsp3 | 1198 | T1198I | T2016I | nonsyn | aCa | aTa | 8183 | 8183 | 1 | 6311-6313 |
ORF1ab/nsp3 | 1198 | T1198K | T2016K | nonsyn | aCa | aAa | 3229 | 3229 | 1 | 6311-6313 |
ORF1ab/nsp3 | 1198 | T1198T | T2016T | syn | acA | acG | 177 | 132 | 0.745763 | 6311-6313 |
ORF1ab/nsp3 | 1198 | T1198T | T2016T | syn | acA | acT | 177 | 34 | 0.19209 | 6311-6313 |
ORF1ab/nsp3 | 1198 | T1198T | T2016T | syn | acA | acC | 177 | 11 | 0.0621469 | 6311-6313 |
ORF1ab/nsp3 | 1198 | T1198A | T2016A | nonsyn | Aca | Gca | 69 | 69 | 1 | 6311-6313 |
ORF1ab/nsp3 | 1198 | T1198S | T2016S | nonsyn | Aca | Tca | 36 | 36 | 1 | 6311-6313 |
ORF1ab/nsp3 | 1198 | T1198del | T2016del | del | ACA | --- | 23 | 23 | 1 | 6311-6313 |
ORF1ab/nsp3 | 1198 | T1198P | T2016P | nonsyn | Aca | Cca | 22 | 22 | 1 | 6311-6313 |
ORF1ab/nsp3 | 1198 | T1198del1 | T2016del1 | del | acA | ac- | 12 | 10 | 0.833333 | 6311-6313 |
ORF1ab/nsp3 | 1198 | T1198del1 | T2016del1 | del | aCa | a-a | 12 | 2 | 0.166667 | 6311-6313 |
ORF1ab/nsp3 | 1198 | T1198R | T2016R | nonsyn | aCa | aGa | 4 | 4 | 1 | 6311-6313 |
ORF1ab/nsp3 | 1198 | T1198L | T2016L | nonsyn | ACa | TTa | 3 | 1 | 0.333333 | 6311-6313 |
ORF1ab/nsp3 | 1198 | T1198L | T2016L | nonsyn | ACa | CTa | 3 | 1 | 0.333333 | 6311-6313 |
ORF1ab/nsp3 | 1198 | T1198L | T2016L | nonsyn | ACA | TTG | 3 | 1 | 0.333333 | 6311-6313 |
ORF1ab/nsp3 | 1198 | T1198V | T2016V | nonsyn | ACa | GTa | 1 | 1 | 1 | 6311-6313 |
Details of the mutation no within lineages (LineageCodonProp is the proportion the codon is observed at, at this particular site, on each lineage):
ORF | CodonNum | Mut | RefCodon | MutCodon | CodonCount | AACount | Lineage | LineageCodonProp |
ORF1ab/nsp3 | 1198 | T1198I | aCa | aTa | 8183 | 8183 | All | 0.001565 |
ORF1ab/nsp3 | 1198 | T1198K | aCa | aAa | 3229 | 3229 | All | 0.000618 |
ORF1ab/nsp3 | 1198 | T1198I | aCa | aTa | 1593 | 1593 | B.1.1.7 | 0.001426 |
ORF1ab/nsp3 | 1198 | T1198K | aCa | aAa | 1109 | 1109 | B.6.6 | 0.985778 |
ORF1ab/nsp3 | 1198 | T1198K | aCa | aAa | 1008 | 1008 | B.6 | 0.917197 |
ORF1ab/nsp3 | 1198 | T1198I | aCa | aTa | 940 | 940 | B.1.617.2 | 0.003539 |
ORF1ab/nsp3 | 1198 | T1198I | aCa | aTa | 674 | 674 | AY.4 | 0.001049 |
ORF1ab/nsp3 | 1198 | T1198I | aCa | aTa | 650 | 650 | B.1.524 | 0.914205 |
ORF1ab/nsp3 | 1198 | T1198I | aCa | aTa | 486 | 486 | AY.43 | 0.002153 |
ORF1ab/nsp3 | 1198 | T1198I | aCa | aTa | 354 | 354 | B.1.2 | 0.003117 |
ORF1ab/nsp3 | 1198 | T1198I | aCa | aTa | 307 | 307 | AY.4.2 | 0.006658 |
ORF1ab/nsp3 | 1198 | T1198T | acA | acG | 132 | 177 | All | 0.000025 |
ORF1ab/nsp3 | 1198 | T1198T | acA | acT | 34 | 177 | All | 0.000007 |
ORF1ab/nsp3 | 1198 | T1198T | acA | acC | 11 | 177 | All | 0.000002 |
ORF1ab/nsp3 | 1198 | T1198I | aCa | aTa | 164 | 164 | AY.34.1 | 0.083631 |
ORF1ab/nsp3 | 1198 | T1198I | aCa | aTa | 161 | 161 | AY.120 | 0.005986 |
ORF1ab/nsp3 | 1198 | T1198K | aCa | aAa | 158 | 158 | B.1.1.41 | 1 |
ORF1ab/nsp3 | 1198 | T1198K | aCa | aAa | 157 | 157 | B.1.1.7 | 0.000141 |
ORF1ab/nsp3 | 1198 | T1198I | aCa | aTa | 129 | 129 | AY.44 | 0.000785 |
ORF1ab/nsp3 | 1198 | T1198I | aCa | aTa | 125 | 125 | B.1.258.17 | 0.012996 |
ORF1ab/nsp3 | 1198 | T1198K | aCa | aAa | 121 | 121 | B.6.8 | 1 |
ORF1ab/nsp3 | 1198 | T1198I | aCa | aTa | 112 | 112 | B.1 | 0.001026 |
ORF1ab/nsp3 | 1198 | T1198I | aCa | aTa | 111 | 111 | P.1 | 0.001749 |
ORF1ab/nsp3 | 1198 | T1198K | aCa | aAa | 108 | 108 | AY.4 | 0.000168 |
ORF1ab/nsp3 | 1198 | T1198I | aCa | aTa | 108 | 108 | Q.3 | 0.015664 |
ORF1ab/nsp3 | 1198 | T1198I | aCa | aTa | 100 | 100 | AY.102 | 0.002651 |
ORF1ab/nsp3 | 1198 | T1198T | acA | acG | 78 | 78 | AY.103 | 0.000484 |
ORF1ab/nsp3 | 1198 | T1198I | aCa | aTa | 77 | 77 | P.1.1 | 0.02446 |
ORF1ab/nsp3 | 1198 | T1198I | aCa | aTa | 71 | 71 | B.1.351.2 | 0.021483 |
ORF1ab/nsp3 | 1198 | T1198A | Aca | Gca | 69 | 69 | All | 0.000013 |
ORF1ab/nsp3 | 1198 | T1198I | aCa | aTa | 68 | 68 | AY.3 | 0.000676 |
ORF1ab/nsp3 | 1198 | T1198I | aCa | aTa | 66 | 66 | AY.25 | 0.000397 |
ORF1ab/nsp3 | 1198 | T1198I | aCa | aTa | 62 | 62 | B.1.177 | 0.000816 |
ORF1ab/nsp3 | 1198 | T1198I | aCa | aTa | 60 | 60 | B.1.36.23 | 0.983607 |
ORF1ab/nsp3 | 1198 | T1198I | aCa | aTa | 57 | 57 | B.1.1.318 | 0.0172 |
ORF1ab/nsp3 | 1198 | T1198I | aCa | aTa | 49 | 49 | B.1.1 | 0.000889 |
ORF1ab/nsp3 | 1198 | T1198K | aCa | aAa | 45 | 45 | B.1.2 | 0.000396 |
ORF1ab/nsp3 | 1198 | T1198I | aCa | aTa | 45 | 45 | B.1.596 | 0.003921 |
ORF1ab/nsp3 | 1198 | T1198I | aCa | aTa | 44 | 44 | AY.103 | 0.000273 |
ORF1ab/nsp3 | 1198 | T1198I | aCa | aTa | 42 | 42 | AY.39 | 0.001038 |
ORF1ab/nsp3 | 1198 | T1198I | aCa | aTa | 41 | 41 | AY.13 | 0.0066 |
ORF1ab/nsp3 | 1198 | T1198I | aCa | aTa | 40 | 40 | AY.98.1 | 0.001937 |
ORF1ab/nsp3 | 1198 | T1198I | aCa | aTa | 40 | 40 | B.1.427 | 0.00202 |
ORF1ab/nsp3 | 1198 | T1198I | aCa | aTa | 38 | 38 | B.1.1.222 | 0.007752 |
ORF1ab/nsp3 | 1198 | T1198K | aCa | aAa | 38 | 38 | B.6.1 | 1 |
ORF1ab/nsp3 | 1198 | T1198K | aCa | aAa | 38 | 38 | B.6.3 | 1 |
ORF1ab/nsp3 | 1198 | T1198S | Aca | Tca | 36 | 36 | All | 0.000007 |
ORF1ab/nsp3 | 1198 | T1198K | aCa | aAa | 36 | 36 | B.1.637 | 0.002631 |
ORF1ab/nsp3 | 1198 | T1198I | aCa | aTa | 35 | 35 | B.1.160.14 | 0.074153 |
ORF1ab/nsp3 | 1198 | T1198K | aCa | aAa | 34 | 34 | AY.121 | 0.004601 |
ORF1ab/nsp3 | 1198 | T1198K | aCa | aAa | 34 | 34 | B.1.617.2 | 0.000128 |
ORF1ab/nsp3 | 1198 | T1198I | aCa | aTa | 33 | 33 | C.26 | 0.242647 |
ORF1ab/nsp3 | 1198 | T1198I | aCa | aTa | 31 | 31 | AY.46 | 0.003226 |
ORF1ab/nsp3 | 1198 | T1198I | aCa | aTa | 31 | 31 | B.1.177.12 | 0.004703 |
ORF1ab/nsp3 | 1198 | T1198I | aCa | aTa | 29 | 29 | B.1.1.519 | 0.001152 |
ORF1ab/nsp3 | 1198 | T1198I | aCa | aTa | 28 | 28 | AY.6 | 0.001152 |
ORF1ab/nsp3 | 1198 | T1198K | aCa | aAa | 28 | 28 | B.1 | 0.000256 |
ORF1ab/nsp3 | 1198 | T1198I | aCa | aTa | 28 | 28 | B.1.160 | 0.000873 |
ORF1ab/nsp3 | 1198 | T1198I | aCa | aTa | 27 | 27 | AY.119 | 0.000953 |
ORF1ab/nsp3 | 1198 | T1198I | aCa | aTa | 27 | 27 | AY.20 | 0.001049 |
ORF1ab/nsp3 | 1198 | T1198I | aCa | aTa | 27 | 27 | AY.42 | 0.001086 |
ORF1ab/nsp3 | 1198 | T1198I | aCa | aTa | 27 | 27 | B.1.1.298 | 0.023276 |
ORF1ab/nsp3 | 1198 | T1198I | aCa | aTa | 27 | 27 | B.1.526 | 0.000635 |
ORF1ab/nsp3 | 1198 | T1198I | aCa | aTa | 27 | 27 | B.1.621 | 0.00239 |
ORF1ab/nsp3 | 1198 | T1198I | aCa | aTa | 26 | 26 | AY.33 | 0.001736 |
ORF1ab/nsp3 | 1198 | T1198I | aCa | aTa | 25 | 25 | AY.5 | 0.000516 |
ORF1ab/nsp3 | 1198 | T1198I | aCa | aTa | 25 | 25 | AY.78 | 0.038521 |
ORF1ab/nsp3 | 1198 | T1198del | ACA | --- | 23 | 23 | All | 0.000004 |
ORF1ab/nsp3 | 1198 | T1198I | aCa | aTa | 23 | 23 | B.1.466.2 | 0.008998 |
ORF1ab/nsp3 | 1198 | T1198I | aCa | aTa | 23 | 23 | B.1.637 | 0.001681 |
ORF1ab/nsp3 | 1198 | T1198P | Aca | Cca | 22 | 22 | All | 0.000004 |
ORF1ab/nsp3 | 1198 | T1198I | aCa | aTa | 22 | 22 | B.1.1.284 | 0.002363 |
ORF1ab/nsp3 | 1198 | T1198K | aCa | aAa | 22 | 22 | B.6.4 | 1 |
ORF1ab/nsp3 | 1198 | T1198K | aCa | aAa | 21 | 21 | AY.103 | 0.00013 |
ORF1ab/nsp3 | 1198 | T1198I | aCa | aTa | 20 | 20 | B.1.568 | 0.022222 |
ORF1ab/nsp3 | 1198 | T1198I | aCa | aTa | 19 | 19 | B.1.351 | 0.000565 |
ORF1ab/nsp3 | 1198 | T1198I | aCa | aTa | 18 | 18 | B.1.362 | 0.027735 |
ORF1ab/nsp3 | 1198 | T1198T | acA | acG | 11 | 17 | B.1.1.7 | 0.00001 |
ORF1ab/nsp3 | 1198 | T1198T | acA | acT | 6 | 17 | B.1.1.7 | 0.000005 |
ORF1ab/nsp3 | 1198 | T1198I | aCa | aTa | 16 | 16 | A.2.5.1 | 0.076923 |
ORF1ab/nsp3 | 1198 | T1198I | aCa | aTa | 16 | 16 | AY.118 | 0.001002 |
ORF1ab/nsp3 | 1198 | T1198I | aCa | aTa | 16 | 16 | B.1.36.29 | 0.008277 |
ORF1ab/nsp3 | 1198 | T1198I | aCa | aTa | 16 | 16 | B.1.429 | 0.000376 |
ORF1ab/nsp3 | 1198 | T1198K | aCa | aAa | 16 | 16 | B.6.2 | 1 |
ORF1ab/nsp3 | 1198 | T1198I | aCa | aTa | 15 | 15 | B.1.221 | 0.001065 |
ORF1ab/nsp3 | 1198 | T1198I | aCa | aTa | 15 | 15 | P.1.14 | 0.000717 |
ORF1ab/nsp3 | 1198 | T1198I | aCa | aTa | 14 | 14 | AY.47 | 0.000435 |
ORF1ab/nsp3 | 1198 | T1198I | aCa | aTa | 14 | 14 | AY.71 | 0.006651 |
ORF1ab/nsp3 | 1198 | T1198I | aCa | aTa | 14 | 14 | B.1.177.75 | 0.014568 |
ORF1ab/nsp3 | 1198 | T1198I | aCa | aTa | 14 | 14 | B.1.243 | 0.000974 |
ORF1ab/nsp3 | 1198 | T1198I | aCa | aTa | 14 | 14 | B.6.6 | 0.012444 |
ORF1ab/nsp3 | 1198 | T1198I | aCa | aTa | 14 | 14 | Q.8 | 0.002309 |
ORF1ab/nsp3 | 1198 | T1198I | aCa | aTa | 13 | 13 | AY.9.2 | 0.000477 |
ORF1ab/nsp3 | 1198 | T1198I | aCa | aTa | 13 | 13 | B.1.258 | 0.000865 |
ORF1ab/nsp3 | 1198 | T1198del1 | acA | ac- | 10 | 12 | All | 0.000002 |
ORF1ab/nsp3 | 1198 | T1198del1 | aCa | a-a | 2 | 12 | All | 0 |
ORF1ab/nsp3 | 1198 | T1198I | aCa | aTa | 12 | 12 | AY.10 | 0.006359 |
ORF1ab/nsp3 | 1198 | T1198A | Aca | Gca | 12 | 12 | AY.103 | 0.000075 |
ORF1ab/nsp3 | 1198 | T1198I | aCa | aTa | 12 | 12 | AY.23 | 0.000837 |
ORF1ab/nsp3 | 1198 | T1198K | aCa | aAa | 12 | 12 | AY.25 | 0.000072 |
ORF1ab/nsp3 | 1198 | T1198I | aCa | aTa | 12 | 12 | AY.29 | 0.000189 |
ORF1ab/nsp3 | 1198 | T1198K | aCa | aAa | 12 | 12 | C.37 | 0.001393 |
ORF1ab/nsp3 | 1198 | T1198K | aCa | aAa | 12 | 12 | P.1 | 0.000189 |
ORF1ab/nsp3 | 1198 | T1198K | aCa | aAa | 11 | 11 | AY.44 | 0.000067 |
ORF1ab/nsp3 | 1198 | T1198I | aCa | aTa | 11 | 11 | AZ.2 | 0.009031 |
ORF1ab/nsp3 | 1198 | T1198K | aCa | aAa | 11 | 11 | B | 0.001406 |
ORF1ab/nsp3 | 1198 | T1198I | aCa | aTa | 11 | 11 | B.1.1.311 | 0.00394 |
ORF1ab/nsp3 | 1198 | T1198A | Aca | Gca | 11 | 11 | B.1.1.7 | 0.00001 |
ORF1ab/nsp3 | 1198 | T1198K | aCa | aAa | 11 | 11 | B.1.177.60 | 0.002403 |
ORF1ab/nsp3 | 1198 | T1198K | aCa | aAa | 11 | 11 | B.6.5 | 0.846154 |
ORF1ab/nsp3 | 1198 | T1198T | acA | acT | 10 | 10 | AY.3 | 0.000099 |
ORF1ab/nsp3 | 1198 | T1198T | acA | acC | 8 | 10 | AY.43 | 0.000035 |
ORF1ab/nsp3 | 1198 | T1198T | acA | acG | 2 | 10 | AY.43 | 0.000009 |
ORF1ab/nsp3 | 1198 | T1198A | Aca | Gca | 10 | 10 | B.1 | 0.000092 |
ORF1ab/nsp3 | 1198 | T1198K | aCa | aAa | 10 | 10 | B.1.1.236 | 0.068966 |
ORF1ab/nsp3 | 1198 | T1198I | aCa | aTa | 10 | 10 | B.1.1.50 | 0.006789 |
ORF1ab/nsp3 | 1198 | T1198K | aCa | aAa | 10 | 10 | B.1.1.519 | 0.000397 |
ORF1ab/nsp3 | 1198 | T1198S | Aca | Tca | 10 | 10 | B.1.1.7 | 0.000009 |
ORF1ab/nsp3 | 1198 | T1198I | aCa | aTa | 10 | 10 | B.1.177.7 | 0.001649 |
ORF1ab/nsp3 | 1198 | T1198I | aCa | aTa | 10 | 10 | B.1.36 | 0.001459 |
ORF1ab/nsp3 | 1198 | T1198T | acA | acG | 10 | 10 | B.1.429 | 0.000235 |
ORF1ab/nsp3 | 1198 | T1198K | aCa | aAa | 10 | 10 | B.1.617.1 | 0.00129 |
ORF1ab/nsp3 | 1198 | T1198I | aCa | aTa | 9 | 9 | AY.3.1 | 0.000767 |
ORF1ab/nsp3 | 1198 | T1198I | aCa | aTa | 9 | 9 | AY.45 | 0.001095 |
ORF1ab/nsp3 | 1198 | T1198I | aCa | aTa | 9 | 9 | AY.74 | 0.001041 |
ORF1ab/nsp3 | 1198 | T1198T | acA | acG | 6 | 9 | B.1 | 0.000055 |
ORF1ab/nsp3 | 1198 | T1198T | acA | acT | 3 | 9 | B.1 | 0.000027 |
ORF1ab/nsp3 | 1198 | T1198P | Aca | Cca | 9 | 9 | B.1.1.7 | 0.000008 |
ORF1ab/nsp3 | 1198 | T1198K | aCa | aAa | 9 | 9 | B.1.157 | 0.026866 |
ORF1ab/nsp3 | 1198 | T1198I | aCa | aTa | 9 | 9 | L.3 | 0.031915 |
ORF1ab/nsp3 | 1198 | T1198K | aCa | aAa | 8 | 8 | AY.4.2 | 0.000174 |
ORF1ab/nsp3 | 1198 | T1198K | aCa | aAa | 8 | 8 | AY.43 | 0.000035 |
ORF1ab/nsp3 | 1198 | T1198P | Aca | Cca | 8 | 8 | AY.9.1 | 0.00067 |
ORF1ab/nsp3 | 1198 | T1198I | aCa | aTa | 8 | 8 | B.1.1.348 | 0.006369 |
ORF1ab/nsp3 | 1198 | T1198K | aCa | aAa | 8 | 8 | B.1.160 | 0.00025 |
ORF1ab/nsp3 | 1198 | T1198I | aCa | aTa | 8 | 8 | B.1.369 | 0.002282 |
ORF1ab/nsp3 | 1198 | T1198I | aCa | aTa | 8 | 8 | B.1.575 | 0.002427 |
ORF1ab/nsp3 | 1198 | T1198I | aCa | aTa | 8 | 8 | C.36 | 0.007286 |
ORF1ab/nsp3 | 1198 | T1198I | aCa | aTa | 8 | 8 | C.37 | 0.000929 |
ORF1ab/nsp3 | 1198 | T1198I | aCa | aTa | 7 | 7 | AY.110 | 0.000789 |
ORF1ab/nsp3 | 1198 | T1198I | aCa | aTa | 7 | 7 | AY.111 | 0.001282 |
ORF1ab/nsp3 | 1198 | T1198I | aCa | aTa | 7 | 7 | AY.39.1 | 0.000277 |
ORF1ab/nsp3 | 1198 | T1198I | aCa | aTa | 7 | 7 | AY.46.4 | 0.001152 |
ORF1ab/nsp3 | 1198 | T1198I | aCa | aTa | 7 | 7 | AY.5.3 | 0.002362 |
ORF1ab/nsp3 | 1198 | T1198I | aCa | aTa | 7 | 7 | AY.61 | 0.000733 |
ORF1ab/nsp3 | 1198 | T1198I | aCa | aTa | 7 | 7 | AY.75 | 0.000392 |
ORF1ab/nsp3 | 1198 | T1198I | aCa | aTa | 7 | 7 | B.1.1.37 | 0.00135 |
ORF1ab/nsp3 | 1198 | T1198S | Aca | Tca | 7 | 7 | B.1.36 | 0.001021 |
ORF1ab/nsp3 | 1198 | T1198I | aCa | aTa | 7 | 7 | B.1.595 | 0.001827 |
ORF1ab/nsp3 | 1198 | T1198I | aCa | aTa | 7 | 7 | Q.1 | 0.000884 |
ORF1ab/nsp3 | 1198 | T1198I | aCa | aTa | 6 | 6 | A.27 | 0.009934 |
ORF1ab/nsp3 | 1198 | T1198I | aCa | aTa | 6 | 6 | AY.26 | 0.00017 |
ORF1ab/nsp3 | 1198 | T1198I | aCa | aTa | 6 | 6 | AY.30 | 0.002374 |
ORF1ab/nsp3 | 1198 | T1198I | aCa | aTa | 6 | 6 | AY.36 | 0.000889 |
ORF1ab/nsp3 | 1198 | T1198A | Aca | Gca | 6 | 6 | AY.4 | 0.000009 |
ORF1ab/nsp3 | 1198 | T1198I | aCa | aTa | 6 | 6 | B.1.1.317 | 0.00247 |
ORF1ab/nsp3 | 1198 | T1198I | aCa | aTa | 6 | 6 | B.1.146 | 0.025424 |
ORF1ab/nsp3 | 1198 | T1198I | aCa | aTa | 6 | 6 | B.1.221.1 | 0.017442 |
ORF1ab/nsp3 | 1198 | T1198A | Aca | Gca | 6 | 6 | B.1.526 | 0.000141 |
ORF1ab/nsp3 | 1198 | T1198I | aCa | aTa | 5 | 5 | AY.100 | 0.00023 |
ORF1ab/nsp3 | 1198 | T1198I | aCa | aTa | 5 | 5 | AY.117 | 0.000423 |
ORF1ab/nsp3 | 1198 | T1198I | aCa | aTa | 5 | 5 | AY.12 | 0.00158 |
ORF1ab/nsp3 | 1198 | T1198T | acA | acT | 5 | 5 | AY.29 | 0.000079 |
ORF1ab/nsp3 | 1198 | T1198S | Aca | Tca | 5 | 5 | AY.4 | 0.000008 |
ORF1ab/nsp3 | 1198 | T1198I | aCa | aTa | 5 | 5 | AY.4.2.1 | 0.000745 |
ORF1ab/nsp3 | 1198 | T1198K | aCa | aAa | 5 | 5 | AY.76 | 0.024155 |
ORF1ab/nsp3 | 1198 | T1198I | aCa | aTa | 5 | 5 | AY.88 | 0.004421 |
ORF1ab/nsp3 | 1198 | T1198I | aCa | aTa | 5 | 5 | AY.98 | 0.000395 |
ORF1ab/nsp3 | 1198 | T1198del | ACA | --- | 5 | 5 | B.1.1.7 | 0.000004 |
ORF1ab/nsp3 | 1198 | T1198I | aCa | aTa | 5 | 5 | B.1.177.33 | 0.008224 |
ORF1ab/nsp3 | 1198 | T1198R | aCa | aGa | 4 | 4 | All | 0.000001 |
ORF1ab/nsp3 | 1198 | T1198K | aCa | aAa | 4 | 4 | AY.100 | 0.000184 |
ORF1ab/nsp3 | 1198 | T1198I | aCa | aTa | 4 | 4 | AY.113 | 0.00057 |
ORF1ab/nsp3 | 1198 | T1198K | aCa | aAa | 4 | 4 | AY.118 | 0.000251 |
ORF1ab/nsp3 | 1198 | T1198del | ACA | --- | 4 | 4 | AY.25 | 0.000024 |
ORF1ab/nsp3 | 1198 | T1198I | aCa | aTa | 4 | 4 | AY.34 | 0.000388 |
ORF1ab/nsp3 | 1198 | T1198A | Aca | Gca | 4 | 4 | AY.44 | 0.000024 |
ORF1ab/nsp3 | 1198 | T1198I | aCa | aTa | 4 | 4 | AY.46.6 | 0.000289 |
ORF1ab/nsp3 | 1198 | T1198K | aCa | aAa | 4 | 4 | AY.71 | 0.0019 |
ORF1ab/nsp3 | 1198 | T1198I | aCa | aTa | 4 | 4 | AY.85 | 0.001709 |
ORF1ab/nsp3 | 1198 | T1198I | aCa | aTa | 4 | 4 | B.1.161 | 0.068966 |
ORF1ab/nsp3 | 1198 | T1198I | aCa | aTa | 4 | 4 | B.1.177.6 | 0.003906 |
ORF1ab/nsp3 | 1198 | T1198I | aCa | aTa | 4 | 4 | B.1.240 | 0.000862 |
ORF1ab/nsp3 | 1198 | T1198K | aCa | aAa | 4 | 4 | B.1.240.1 | 0.1 |
ORF1ab/nsp3 | 1198 | T1198I | aCa | aTa | 4 | 4 | B.1.627 | 0.008081 |
ORF1ab/nsp3 | 1198 | T1198I | aCa | aTa | 4 | 4 | B.40 | 0.001457 |
ORF1ab/nsp3 | 1198 | T1198I | aCa | aTa | 4 | 4 | D.2 | 0.0003 |
ORF1ab/nsp3 | 1198 | T1198I | aCa | aTa | 4 | 4 | P.2 | 0.000747 |
ORF1ab/nsp3 | 1198 | T1198K | aCa | aAa | 3 | 3 | A | 0.001161 |
ORF1ab/nsp3 | 1198 | T1198I | aCa | aTa | 3 | 3 | A.23.1 | 0.002113 |
ORF1ab/nsp3 | 1198 | T1198L | ACA | TTG | 1 | 3 | All | 0 |
ORF1ab/nsp3 | 1198 | T1198L | ACa | TTa | 1 | 3 | All | 0 |
ORF1ab/nsp3 | 1198 | T1198L | ACa | CTa | 1 | 3 | All | 0 |
ORF1ab/nsp3 | 1198 | T1198I | aCa | aTa | 3 | 3 | AY.116 | 0.00086 |
ORF1ab/nsp3 | 1198 | T1198I | aCa | aTa | 3 | 3 | AY.121 | 0.000406 |
ORF1ab/nsp3 | 1198 | T1198K | aCa | aAa | 3 | 3 | AY.23 | 0.000209 |
ORF1ab/nsp3 | 1198 | T1198K | aCa | aAa | 3 | 3 | AY.3 | 0.00003 |
ORF1ab/nsp3 | 1198 | T1198I | aCa | aTa | 3 | 3 | AY.4.5 | 0.000322 |
ORF1ab/nsp3 | 1198 | T1198K | aCa | aAa | 3 | 3 | AY.46 | 0.000312 |
ORF1ab/nsp3 | 1198 | T1198I | aCa | aTa | 3 | 3 | AY.5.4 | 0.00083 |
ORF1ab/nsp3 | 1198 | T1198T | acA | acG | 3 | 3 | AY.57 | 0.001969 |
ORF1ab/nsp3 | 1198 | T1198I | aCa | aTa | 3 | 3 | AY.95 | 0.002283 |
ORF1ab/nsp3 | 1198 | T1198I | aCa | aTa | 3 | 3 | AY.99 | 0.003148 |
ORF1ab/nsp3 | 1198 | T1198I | aCa | aTa | 3 | 3 | B.1.1.214 | 0.000166 |
ORF1ab/nsp3 | 1198 | T1198T | acA | acG | 3 | 3 | B.1.1.216 | 0.002671 |
ORF1ab/nsp3 | 1198 | T1198I | aCa | aTa | 3 | 3 | B.1.1.486 | 0.004732 |
ORF1ab/nsp3 | 1198 | T1198T | acA | acT | 2 | 3 | B.1.177 | 0.000026 |
ORF1ab/nsp3 | 1198 | T1198T | acA | acG | 1 | 3 | B.1.177 | 0.000013 |
ORF1ab/nsp3 | 1198 | T1198I | aCa | aTa | 3 | 3 | B.1.177.60 | 0.000655 |
ORF1ab/nsp3 | 1198 | T1198I | aCa | aTa | 3 | 3 | B.1.177.65 | 0.001996 |
ORF1ab/nsp3 | 1198 | T1198I | aCa | aTa | 3 | 3 | B.1.177.9 | 0.003995 |
ORF1ab/nsp3 | 1198 | T1198I | aCa | aTa | 3 | 3 | B.1.234 | 0.000396 |
ORF1ab/nsp3 | 1198 | T1198I | aCa | aTa | 3 | 3 | B.1.336 | 0.007317 |
ORF1ab/nsp3 | 1198 | T1198I | aCa | aTa | 3 | 3 | B.1.36.8 | 0.003 |
ORF1ab/nsp3 | 1198 | T1198I | aCa | aTa | 3 | 3 | B.1.371 | 0.003367 |
ORF1ab/nsp3 | 1198 | T1198K | aCa | aAa | 3 | 3 | B.1.396 | 0.002117 |
ORF1ab/nsp3 | 1198 | T1198I | aCa | aTa | 3 | 3 | B.1.438.1 | 0.000322 |
ORF1ab/nsp3 | 1198 | T1198I | aCa | aTa | 3 | 3 | B.1.560 | 0.013889 |
ORF1ab/nsp3 | 1198 | T1198I | aCa | aTa | 3 | 3 | B.1.617.1 | 0.000387 |
ORF1ab/nsp3 | 1198 | T1198I | aCa | aTa | 3 | 3 | B.1.628 | 0.001057 |
ORF1ab/nsp3 | 1198 | T1198I | aCa | aTa | 2 | 2 | A.2.5 | 0.000998 |
ORF1ab/nsp3 | 1198 | T1198T | acA | acT | 2 | 2 | AY.102 | 0.000053 |
ORF1ab/nsp3 | 1198 | T1198S | Aca | Tca | 2 | 2 | AY.113 | 0.000285 |
ORF1ab/nsp3 | 1198 | T1198S | Aca | Tca | 2 | 2 | AY.117 | 0.000169 |
ORF1ab/nsp3 | 1198 | T1198I | aCa | aTa | 2 | 2 | AY.120.2.1 | 0.000997 |
ORF1ab/nsp3 | 1198 | T1198del1 | acA | ac- | 2 | 2 | AY.25 | 0.000012 |
ORF1ab/nsp3 | 1198 | T1198I | aCa | aTa | 2 | 2 | AY.29.1 | 0.000441 |
ORF1ab/nsp3 | 1198 | T1198A | Aca | Gca | 2 | 2 | AY.3.1 | 0.000171 |
ORF1ab/nsp3 | 1198 | T1198K | aCa | aAa | 2 | 2 | AY.32 | 0.001065 |
ORF1ab/nsp3 | 1198 | T1198K | aCa | aAa | 2 | 2 | AY.33 | 0.000134 |
ORF1ab/nsp3 | 1198 | T1198T | acA | acT | 2 | 2 | AY.33 | 0.000134 |
ORF1ab/nsp3 | 1198 | T1198T | acA | acC | 2 | 2 | AY.37 | 0.000632 |
ORF1ab/nsp3 | 1198 | T1198K | aCa | aAa | 2 | 2 | AY.39 | 0.000049 |
ORF1ab/nsp3 | 1198 | T1198I | aCa | aTa | 2 | 2 | AY.58 | 0.001815 |
ORF1ab/nsp3 | 1198 | T1198K | aCa | aAa | 2 | 2 | AY.6 | 0.000082 |
ORF1ab/nsp3 | 1198 | T1198I | aCa | aTa | 2 | 2 | AY.62 | 0.000871 |
ORF1ab/nsp3 | 1198 | T1198I | aCa | aTa | 2 | 2 | AY.68 | 0.000547 |
ORF1ab/nsp3 | 1198 | T1198I | aCa | aTa | 2 | 2 | AY.75.1 | 0.000361 |
ORF1ab/nsp3 | 1198 | T1198I | aCa | aTa | 2 | 2 | AY.9 | 0.000135 |
ORF1ab/nsp3 | 1198 | T1198T | acA | acT | 2 | 2 | AY.9.1 | 0.000167 |
ORF1ab/nsp3 | 1198 | T1198I | aCa | aTa | 2 | 2 | AY.91 | 0.001461 |
ORF1ab/nsp3 | 1198 | T1198I | aCa | aTa | 2 | 2 | AY.92 | 0.000575 |
ORF1ab/nsp3 | 1198 | T1198I | aCa | aTa | 2 | 2 | AY.94 | 0.000885 |
ORF1ab/nsp3 | 1198 | T1198I | aCa | aTa | 2 | 2 | B | 0.000256 |
ORF1ab/nsp3 | 1198 | T1198R | aCa | aGa | 2 | 2 | B.1 | 0.000018 |
ORF1ab/nsp3 | 1198 | T1198P | Aca | Cca | 2 | 2 | B.1 | 0.000018 |
ORF1ab/nsp3 | 1198 | T1198del | ACA | --- | 2 | 2 | B.1 | 0.000018 |
ORF1ab/nsp3 | 1198 | T1198K | aCa | aAa | 2 | 2 | B.1.1 | 0.000036 |
ORF1ab/nsp3 | 1198 | T1198A | Aca | Gca | 2 | 2 | B.1.1.137 | 0.025 |
ORF1ab/nsp3 | 1198 | T1198I | aCa | aTa | 2 | 2 | B.1.1.176 | 0.000879 |
ORF1ab/nsp3 | 1198 | T1198I | aCa | aTa | 2 | 2 | B.1.1.28 | 0.000622 |
ORF1ab/nsp3 | 1198 | T1198K | aCa | aAa | 2 | 2 | B.1.1.306 | 0.000877 |
ORF1ab/nsp3 | 1198 | T1198K | aCa | aAa | 2 | 2 | B.1.1.318 | 0.000604 |
ORF1ab/nsp3 | 1198 | T1198K | aCa | aAa | 2 | 2 | B.1.1.354 | 0.008772 |
ORF1ab/nsp3 | 1198 | T1198I | aCa | aTa | 2 | 2 | B.1.1.417 | 0.005405 |
ORF1ab/nsp3 | 1198 | T1198I | aCa | aTa | 2 | 2 | B.1.1.434 | 0.000697 |
ORF1ab/nsp3 | 1198 | T1198del1 | acA | ac- | 2 | 2 | B.1.1.7 | 0.000002 |
ORF1ab/nsp3 | 1198 | T1198I | aCa | aTa | 2 | 2 | B.1.1.89 | 0.012121 |
ORF1ab/nsp3 | 1198 | T1198T | acA | acG | 2 | 2 | B.1.160 | 0.000062 |
ORF1ab/nsp3 | 1198 | T1198I | aCa | aTa | 2 | 2 | B.1.177.35 | 0.001382 |
ORF1ab/nsp3 | 1198 | T1198I | aCa | aTa | 2 | 2 | B.1.177.57 | 0.000562 |
ORF1ab/nsp3 | 1198 | T1198I | aCa | aTa | 2 | 2 | B.1.177.58 | 0.002663 |
ORF1ab/nsp3 | 1198 | T1198K | aCa | aAa | 2 | 2 | B.1.177.81 | 0.000379 |
ORF1ab/nsp3 | 1198 | T1198I | aCa | aTa | 2 | 2 | B.1.177.81 | 0.000379 |
ORF1ab/nsp3 | 1198 | T1198del1 | acA | ac- | 2 | 2 | B.1.2 | 0.000018 |
ORF1ab/nsp3 | 1198 | T1198T | acA | acG | 2 | 2 | B.1.243 | 0.000139 |
ORF1ab/nsp3 | 1198 | T1198K | aCa | aAa | 2 | 2 | B.1.258 | 0.000133 |
ORF1ab/nsp3 | 1198 | T1198T | acA | acG | 2 | 2 | B.1.258.17 | 0.000208 |
ORF1ab/nsp3 | 1198 | T1198I | aCa | aTa | 2 | 2 | B.1.260 | 0.006689 |
ORF1ab/nsp3 | 1198 | T1198I | aCa | aTa | 2 | 2 | B.1.311 | 0.000549 |
ORF1ab/nsp3 | 1198 | T1198I | aCa | aTa | 2 | 2 | B.1.346 | 0.002621 |
ORF1ab/nsp3 | 1198 | T1198K | aCa | aAa | 2 | 2 | B.1.351 | 0.000059 |
ORF1ab/nsp3 | 1198 | T1198K | aCa | aAa | 2 | 2 | B.1.36 | 0.000292 |
ORF1ab/nsp3 | 1198 | T1198I | aCa | aTa | 2 | 2 | B.1.367 | 0.001585 |
ORF1ab/nsp3 | 1198 | T1198K | aCa | aAa | 2 | 2 | B.1.369 | 0.00057 |
ORF1ab/nsp3 | 1198 | T1198I | aCa | aTa | 2 | 2 | B.1.400 | 0.000858 |
ORF1ab/nsp3 | 1198 | T1198I | aCa | aTa | 2 | 2 | B.1.403 | 0.006536 |
ORF1ab/nsp3 | 1198 | T1198A | Aca | Gca | 2 | 2 | B.1.429 | 0.000047 |
ORF1ab/nsp3 | 1198 | T1198K | aCa | aAa | 2 | 2 | B.1.429 | 0.000047 |
ORF1ab/nsp3 | 1198 | T1198K | aCa | aAa | 2 | 2 | B.1.551 | 0.002581 |
ORF1ab/nsp3 | 1198 | T1198I | aCa | aTa | 2 | 2 | B.1.582 | 0.000981 |
ORF1ab/nsp3 | 1198 | T1198T | acA | acG | 2 | 2 | B.1.617.2 | 0.000008 |
ORF1ab/nsp3 | 1198 | T1198A | Aca | Gca | 2 | 2 | B.1.621 | 0.000177 |
ORF1ab/nsp3 | 1198 | T1198I | aCa | aTa | 2 | 2 | C.36.3 | 0.001134 |
ORF1ab/nsp3 | 1198 | T1198T | acA | acG | 2 | 2 | C.37 | 0.000232 |
ORF1ab/nsp3 | 1198 | T1198I | aCa | aTa | 2 | 2 | C.37.1 | 0.005236 |
ORF1ab/nsp3 | 1198 | T1198del1 | acA | ac- | 2 | 2 | P.1 | 0.000032 |
ORF1ab/nsp3 | 1198 | T1198I | aCa | aTa | 2 | 2 | P.1.10 | 0.000539 |
ORF1ab/nsp3 | 1198 | T1198T | acA | acG | 2 | 2 | P.1.15 | 0.000465 |
ORF1ab/nsp3 | 1198 | T1198K | aCa | aAa | 2 | 2 | P.1.15 | 0.000465 |
ORF1ab/nsp3 | 1198 | T1198I | aCa | aTa | 2 | 2 | P.1.15 | 0.000465 |
ORF1ab/nsp3 | 1198 | T1198I | aCa | aTa | 2 | 2 | P.1.16 | 0.000748 |
ORF1ab/nsp3 | 1198 | T1198K | aCa | aAa | 2 | 2 | P.1.7 | 0.000639 |
ORF1ab/nsp3 | 1198 | T1198K | aCa | aAa | 2 | 2 | Q.3 | 0.00029 |
ORF1ab/nsp3 | 1198 | T1198I | aCa | aTa | 1 | 1 | A.1 | 0.000282 |
ORF1ab/nsp3 | 1198 | T1198I | aCa | aTa | 1 | 1 | A.2 | 0.000662 |
ORF1ab/nsp3 | 1198 | T1198S | Aca | Tca | 1 | 1 | A.2 | 0.000662 |
ORF1ab/nsp3 | 1198 | T1198K | aCa | aAa | 1 | 1 | A.2.5 | 0.000499 |
ORF1ab/nsp3 | 1198 | T1198I | aCa | aTa | 1 | 1 | A.2.5.3 | 0.010309 |
ORF1ab/nsp3 | 1198 | T1198I | aCa | aTa | 1 | 1 | A.5 | 0.001923 |
ORF1ab/nsp3 | 1198 | T1198I | aCa | aTa | 1 | 1 | AH.3 | 0.003802 |
ORF1ab/nsp3 | 1198 | T1198I | aCa | aTa | 1 | 1 | AK.1 | 0.012658 |
ORF1ab/nsp3 | 1198 | T1198V | ACa | GTa | 1 | 1 | All | 0 |
ORF1ab/nsp3 | 1198 | T1198K | aCa | aAa | 1 | 1 | AU.1 | 0.001266 |
ORF1ab/nsp3 | 1198 | T1198I | aCa | aTa | 1 | 1 | AU.3 | 0.00211 |
ORF1ab/nsp3 | 1198 | T1198I | aCa | aTa | 1 | 1 | AY.1 | 0.000396 |
ORF1ab/nsp3 | 1198 | T1198T | acA | acG | 1 | 1 | AY.100 | 0.000046 |
ORF1ab/nsp3 | 1198 | T1198I | aCa | aTa | 1 | 1 | AY.101 | 0.00049 |
ORF1ab/nsp3 | 1198 | T1198del | ACA | --- | 1 | 1 | AY.101 | 0.00049 |
ORF1ab/nsp3 | 1198 | T1198R | aCa | aGa | 1 | 1 | AY.102 | 0.000027 |
ORF1ab/nsp3 | 1198 | T1198A | Aca | Gca | 1 | 1 | AY.102 | 0.000027 |
ORF1ab/nsp3 | 1198 | T1198I | aCa | aTa | 1 | 1 | AY.105 | 0.000643 |
ORF1ab/nsp3 | 1198 | T1198A | Aca | Gca | 1 | 1 | AY.105 | 0.000643 |
ORF1ab/nsp3 | 1198 | T1198I | aCa | aTa | 1 | 1 | AY.106 | 0.000335 |
ORF1ab/nsp3 | 1198 | T1198I | aCa | aTa | 1 | 1 | AY.108 | 0.001103 |
ORF1ab/nsp3 | 1198 | T1198K | aCa | aAa | 1 | 1 | AY.111 | 0.000183 |
ORF1ab/nsp3 | 1198 | T1198K | aCa | aAa | 1 | 1 | AY.119 | 0.000035 |
ORF1ab/nsp3 | 1198 | T1198K | aCa | aAa | 1 | 1 | AY.120 | 0.000037 |
ORF1ab/nsp3 | 1198 | T1198I | aCa | aTa | 1 | 1 | AY.120.2 | 0.001285 |
ORF1ab/nsp3 | 1198 | T1198K | aCa | aAa | 1 | 1 | AY.14 | 0.000088 |
ORF1ab/nsp3 | 1198 | T1198I | aCa | aTa | 1 | 1 | AY.16 | 0.00038 |
ORF1ab/nsp3 | 1198 | T1198I | aCa | aTa | 1 | 1 | AY.16.1 | 0.00047 |
ORF1ab/nsp3 | 1198 | T1198K | aCa | aAa | 1 | 1 | AY.2 | 0.000356 |
ORF1ab/nsp3 | 1198 | T1198K | aCa | aAa | 1 | 1 | AY.20 | 0.000039 |
ORF1ab/nsp3 | 1198 | T1198S | Aca | Tca | 1 | 1 | AY.20 | 0.000039 |
ORF1ab/nsp3 | 1198 | T1198S | Aca | Tca | 1 | 1 | AY.25 | 0.000006 |
ORF1ab/nsp3 | 1198 | T1198T | acA | acT | 1 | 1 | AY.25 | 0.000006 |
ORF1ab/nsp3 | 1198 | T1198K | aCa | aAa | 1 | 1 | AY.26 | 0.000028 |
ORF1ab/nsp3 | 1198 | T1198S | Aca | Tca | 1 | 1 | AY.26 | 0.000028 |
ORF1ab/nsp3 | 1198 | T1198I | aCa | aTa | 1 | 1 | AY.27 | 0.000065 |
ORF1ab/nsp3 | 1198 | T1198L | ACA | TTG | 1 | 1 | AY.30 | 0.000396 |
ORF1ab/nsp3 | 1198 | T1198S | Aca | Tca | 1 | 1 | AY.30 | 0.000396 |
ORF1ab/nsp3 | 1198 | T1198I | aCa | aTa | 1 | 1 | AY.35 | 0.000233 |
ORF1ab/nsp3 | 1198 | T1198K | aCa | aAa | 1 | 1 | AY.35 | 0.000233 |
ORF1ab/nsp3 | 1198 | T1198K | aCa | aAa | 1 | 1 | AY.37 | 0.000316 |
ORF1ab/nsp3 | 1198 | T1198I | aCa | aTa | 1 | 1 | AY.37 | 0.000316 |
ORF1ab/nsp3 | 1198 | T1198I | aCa | aTa | 1 | 1 | AY.38 | 0.000499 |
ORF1ab/nsp3 | 1198 | T1198K | aCa | aAa | 1 | 1 | AY.39.1 | 0.00004 |
ORF1ab/nsp3 | 1198 | T1198I | aCa | aTa | 1 | 1 | AY.39.2 | 0.001541 |
ORF1ab/nsp3 | 1198 | T1198T | acA | acT | 1 | 1 | AY.4 | 0.000002 |
ORF1ab/nsp3 | 1198 | T1198K | aCa | aAa | 1 | 1 | AY.42 | 0.00004 |
ORF1ab/nsp3 | 1198 | T1198V | ACa | GTa | 1 | 1 | AY.43 | 0.000004 |
ORF1ab/nsp3 | 1198 | T1198A | Aca | Gca | 1 | 1 | AY.43 | 0.000004 |
ORF1ab/nsp3 | 1198 | T1198L | ACa | TTa | 1 | 1 | AY.44 | 0.000006 |
ORF1ab/nsp3 | 1198 | T1198T | acA | acC | 1 | 1 | AY.44 | 0.000006 |
ORF1ab/nsp3 | 1198 | T1198K | aCa | aAa | 1 | 1 | AY.45 | 0.000122 |
ORF1ab/nsp3 | 1198 | T1198I | aCa | aTa | 1 | 1 | AY.46.2 | 0.000635 |
ORF1ab/nsp3 | 1198 | T1198K | aCa | aAa | 1 | 1 | AY.47 | 0.000031 |
ORF1ab/nsp3 | 1198 | T1198K | aCa | aAa | 1 | 1 | AY.48 | 0.000465 |
ORF1ab/nsp3 | 1198 | T1198I | aCa | aTa | 1 | 1 | AY.49 | 0.003195 |
ORF1ab/nsp3 | 1198 | T1198K | aCa | aAa | 1 | 1 | AY.5 | 0.000021 |
ORF1ab/nsp3 | 1198 | T1198I | aCa | aTa | 1 | 1 | AY.51 | 0.000909 |
ORF1ab/nsp3 | 1198 | T1198K | aCa | aAa | 1 | 1 | AY.62 | 0.000436 |
ORF1ab/nsp3 | 1198 | T1198del | ACA | --- | 1 | 1 | AY.66 | 0.00107 |
ORF1ab/nsp3 | 1198 | T1198P | Aca | Cca | 1 | 1 | AY.7.2 | 0.000559 |
ORF1ab/nsp3 | 1198 | T1198I | aCa | aTa | 1 | 1 | AY.73 | 0.000665 |
ORF1ab/nsp3 | 1198 | T1198R | aCa | aGa | 1 | 1 | AY.75 | 0.000056 |
ORF1ab/nsp3 | 1198 | T1198I | aCa | aTa | 1 | 1 | AY.77 | 0.001127 |
ORF1ab/nsp3 | 1198 | T1198K | aCa | aAa | 1 | 1 | AY.79 | 0.001211 |
ORF1ab/nsp3 | 1198 | T1198I | aCa | aTa | 1 | 1 | AY.82 | 0.001357 |
ORF1ab/nsp3 | 1198 | T1198del | ACA | --- | 1 | 1 | AY.85 | 0.000427 |
ORF1ab/nsp3 | 1198 | T1198A | Aca | Gca | 1 | 1 | AY.9 | 0.000068 |
ORF1ab/nsp3 | 1198 | T1198I | aCa | aTa | 1 | 1 | AY.9.1 | 0.000084 |
ORF1ab/nsp3 | 1198 | T1198K | aCa | aAa | 1 | 1 | AY.9.1 | 0.000084 |
ORF1ab/nsp3 | 1198 | T1198P | Aca | Cca | 1 | 1 | AY.9.2 | 0.000037 |
ORF1ab/nsp3 | 1198 | T1198A | Aca | Gca | 1 | 1 | AY.98 | 0.000079 |
ORF1ab/nsp3 | 1198 | T1198K | aCa | aAa | 1 | 1 | AY.98 | 0.000079 |
ORF1ab/nsp3 | 1198 | T1198del | ACA | --- | 1 | 1 | AY.99 | 0.001049 |
ORF1ab/nsp3 | 1198 | T1198K | aCa | aAa | 1 | 1 | AZ.2 | 0.000821 |
ORF1ab/nsp3 | 1198 | T1198T | acA | acG | 1 | 1 | B | 0.000128 |
ORF1ab/nsp3 | 1198 | T1198K | aCa | aAa | 1 | 1 | B.1.1.1 | 0.000327 |
ORF1ab/nsp3 | 1198 | T1198I | aCa | aTa | 1 | 1 | B.1.1.1 | 0.000327 |
ORF1ab/nsp3 | 1198 | T1198K | aCa | aAa | 1 | 1 | B.1.1.161 | 0.003534 |
ORF1ab/nsp3 | 1198 | T1198I | aCa | aTa | 1 | 1 | B.1.1.200 | 0.007463 |
ORF1ab/nsp3 | 1198 | T1198I | aCa | aTa | 1 | 1 | B.1.1.207 | 0.001182 |
ORF1ab/nsp3 | 1198 | T1198I | aCa | aTa | 1 | 1 | B.1.1.220 | 0.001859 |
ORF1ab/nsp3 | 1198 | T1198L | ACa | CTa | 1 | 1 | B.1.1.222 | 0.000204 |
ORF1ab/nsp3 | 1198 | T1198I | aCa | aTa | 1 | 1 | B.1.1.25 | 0.000569 |
ORF1ab/nsp3 | 1198 | T1198I | aCa | aTa | 1 | 1 | B.1.1.265 | 0.003155 |
ORF1ab/nsp3 | 1198 | T1198I | aCa | aTa | 1 | 1 | B.1.1.274 | 0.005051 |
ORF1ab/nsp3 | 1198 | T1198I | aCa | aTa | 1 | 1 | B.1.1.277 | 0.000759 |
ORF1ab/nsp3 | 1198 | T1198I | aCa | aTa | 1 | 1 | B.1.1.306 | 0.000438 |
ORF1ab/nsp3 | 1198 | T1198del | ACA | --- | 1 | 1 | B.1.1.315 | 0.008475 |
ORF1ab/nsp3 | 1198 | T1198I | aCa | aTa | 1 | 1 | B.1.1.322 | 0.008772 |
ORF1ab/nsp3 | 1198 | T1198I | aCa | aTa | 1 | 1 | B.1.1.33 | 0.000421 |
ORF1ab/nsp3 | 1198 | T1198I | aCa | aTa | 1 | 1 | B.1.1.338 | 0.017241 |
ORF1ab/nsp3 | 1198 | T1198del | ACA | --- | 1 | 1 | B.1.1.348 | 0.000796 |
ORF1ab/nsp3 | 1198 | T1198I | aCa | aTa | 1 | 1 | B.1.1.366 | 0.015873 |
ORF1ab/nsp3 | 1198 | T1198I | aCa | aTa | 1 | 1 | B.1.1.372 | 0.000689 |
ORF1ab/nsp3 | 1198 | T1198I | aCa | aTa | 1 | 1 | B.1.1.374 | 0.002375 |
ORF1ab/nsp3 | 1198 | T1198K | aCa | aAa | 1 | 1 | B.1.1.389 | 0.006061 |
ORF1ab/nsp3 | 1198 | T1198A | Aca | Gca | 1 | 1 | B.1.1.402 | 0.011111 |
ORF1ab/nsp3 | 1198 | T1198I | aCa | aTa | 1 | 1 | B.1.1.409 | 0.002833 |
ORF1ab/nsp3 | 1198 | T1198A | Aca | Gca | 1 | 1 | B.1.1.409 | 0.002833 |
ORF1ab/nsp3 | 1198 | T1198I | aCa | aTa | 1 | 1 | B.1.1.440 | 0.011765 |
ORF1ab/nsp3 | 1198 | T1198K | aCa | aAa | 1 | 1 | B.1.1.46 | 0.004367 |
ORF1ab/nsp3 | 1198 | T1198T | acA | acG | 1 | 1 | B.1.1.519 | 0.00004 |
ORF1ab/nsp3 | 1198 | T1198A | Aca | Gca | 1 | 1 | B.1.1.519 | 0.00004 |
ORF1ab/nsp3 | 1198 | T1198I | aCa | aTa | 1 | 1 | B.1.1.521 | 0.005348 |
ORF1ab/nsp3 | 1198 | T1198I | aCa | aTa | 1 | 1 | B.1.1.523 | 0.001563 |
ORF1ab/nsp3 | 1198 | T1198I | aCa | aTa | 1 | 1 | B.1.1.525 | 0.005464 |
ORF1ab/nsp3 | 1198 | T1198I | aCa | aTa | 1 | 1 | B.1.1.54 | 0.003021 |
ORF1ab/nsp3 | 1198 | T1198I | aCa | aTa | 1 | 1 | B.1.1.63 | 0.000386 |
ORF1ab/nsp3 | 1198 | T1198I | aCa | aTa | 1 | 1 | B.1.1.70 | 0.000341 |
ORF1ab/nsp3 | 1198 | T1198I | aCa | aTa | 1 | 1 | B.1.1.71 | 0.006061 |
ORF1ab/nsp3 | 1198 | T1198I | aCa | aTa | 1 | 1 | B.1.111 | 0.001175 |
ORF1ab/nsp3 | 1198 | T1198I | aCa | aTa | 1 | 1 | B.1.116 | 0.011628 |
ORF1ab/nsp3 | 1198 | T1198K | aCa | aAa | 1 | 1 | B.1.128 | 0.000635 |
ORF1ab/nsp3 | 1198 | T1198I | aCa | aTa | 1 | 1 | B.1.157 | 0.002985 |
ORF1ab/nsp3 | 1198 | T1198I | aCa | aTa | 1 | 1 | B.1.160.16 | 0.000929 |
ORF1ab/nsp3 | 1198 | T1198A | Aca | Gca | 1 | 1 | B.1.177 | 0.000013 |
ORF1ab/nsp3 | 1198 | T1198del | ACA | --- | 1 | 1 | B.1.177 | 0.000013 |
ORF1ab/nsp3 | 1198 | T1198I | aCa | aTa | 1 | 1 | B.1.177.10 | 0.000878 |
ORF1ab/nsp3 | 1198 | T1198I | aCa | aTa | 1 | 1 | B.1.177.11 | 0.001698 |
ORF1ab/nsp3 | 1198 | T1198del1 | aCa | a-a | 1 | 1 | B.1.177.12 | 0.000152 |
ORF1ab/nsp3 | 1198 | T1198I | aCa | aTa | 1 | 1 | B.1.177.15 | 0.000631 |
ORF1ab/nsp3 | 1198 | T1198I | aCa | aTa | 1 | 1 | B.1.177.16 | 0.000664 |
ORF1ab/nsp3 | 1198 | T1198I | aCa | aTa | 1 | 1 | B.1.177.21 | 0.000076 |
ORF1ab/nsp3 | 1198 | T1198I | aCa | aTa | 1 | 1 | B.1.177.32 | 0.00135 |
ORF1ab/nsp3 | 1198 | T1198K | aCa | aAa | 1 | 1 | B.1.177.43 | 0.001477 |
ORF1ab/nsp3 | 1198 | T1198S | Aca | Tca | 1 | 1 | B.1.177.44 | 0.000519 |
ORF1ab/nsp3 | 1198 | T1198I | aCa | aTa | 1 | 1 | B.1.177.44 | 0.000519 |
ORF1ab/nsp3 | 1198 | T1198del | ACA | --- | 1 | 1 | B.1.177.62 | 0.001192 |
ORF1ab/nsp3 | 1198 | T1198I | aCa | aTa | 1 | 1 | B.1.177.73 | 0.000566 |
ORF1ab/nsp3 | 1198 | T1198I | aCa | aTa | 1 | 1 | B.1.205 | 0.02381 |
ORF1ab/nsp3 | 1198 | T1198I | aCa | aTa | 1 | 1 | B.1.206 | 0.000816 |
ORF1ab/nsp3 | 1198 | T1198I | aCa | aTa | 1 | 1 | B.1.210 | 0.002132 |
ORF1ab/nsp3 | 1198 | T1198A | Aca | Gca | 1 | 1 | B.1.214.2 | 0.0006 |
ORF1ab/nsp3 | 1198 | T1198I | aCa | aTa | 1 | 1 | B.1.218 | 0.005155 |
ORF1ab/nsp3 | 1198 | T1198I | aCa | aTa | 1 | 1 | B.1.221.3 | 0.000833 |
ORF1ab/nsp3 | 1198 | T1198I | aCa | aTa | 1 | 1 | B.1.232 | 0.000537 |
ORF1ab/nsp3 | 1198 | T1198I | aCa | aTa | 1 | 1 | B.1.236 | 0.002053 |
ORF1ab/nsp3 | 1198 | T1198K | aCa | aAa | 1 | 1 | B.1.239 | 0.001221 |
ORF1ab/nsp3 | 1198 | T1198I | aCa | aTa | 1 | 1 | B.1.258.22 | 0.002667 |
ORF1ab/nsp3 | 1198 | T1198K | aCa | aAa | 1 | 1 | B.1.260 | 0.003344 |
ORF1ab/nsp3 | 1198 | T1198K | aCa | aAa | 1 | 1 | B.1.284 | 0.013158 |
ORF1ab/nsp3 | 1198 | T1198I | aCa | aTa | 1 | 1 | B.1.338 | 0.008621 |
ORF1ab/nsp3 | 1198 | T1198I | aCa | aTa | 1 | 1 | B.1.351.3 | 0.000876 |
ORF1ab/nsp3 | 1198 | T1198I | aCa | aTa | 1 | 1 | B.1.357 | 0.009524 |
ORF1ab/nsp3 | 1198 | T1198I | aCa | aTa | 1 | 1 | B.1.36.10 | 0.004785 |
ORF1ab/nsp3 | 1198 | T1198K | aCa | aAa | 1 | 1 | B.1.36.10 | 0.004785 |
ORF1ab/nsp3 | 1198 | T1198I | aCa | aTa | 1 | 1 | B.1.36.17 | 0.000494 |
ORF1ab/nsp3 | 1198 | T1198I | aCa | aTa | 1 | 1 | B.1.36.36 | 0.000602 |
ORF1ab/nsp3 | 1198 | T1198I | aCa | aTa | 1 | 1 | B.1.362.2 | 0.004717 |
ORF1ab/nsp3 | 1198 | T1198I | aCa | aTa | 1 | 1 | B.1.396 | 0.000706 |
ORF1ab/nsp3 | 1198 | T1198I | aCa | aTa | 1 | 1 | B.1.397 | 0.004854 |
ORF1ab/nsp3 | 1198 | T1198del1 | acA | ac- | 1 | 1 | B.1.399 | 0.001934 |
ORF1ab/nsp3 | 1198 | T1198I | aCa | aTa | 1 | 1 | B.1.409 | 0.000781 |
ORF1ab/nsp3 | 1198 | T1198K | aCa | aAa | 1 | 1 | B.1.411 | 0.003704 |
ORF1ab/nsp3 | 1198 | T1198K | aCa | aAa | 1 | 1 | B.1.416 | 0.001269 |
ORF1ab/nsp3 | 1198 | T1198I | aCa | aTa | 1 | 1 | B.1.432 | 0.011236 |
ORF1ab/nsp3 | 1198 | T1198K | aCa | aAa | 1 | 1 | B.1.438.1 | 0.000107 |
ORF1ab/nsp3 | 1198 | T1198P | Aca | Cca | 1 | 1 | B.1.438.1 | 0.000107 |
ORF1ab/nsp3 | 1198 | T1198S | Aca | Tca | 1 | 1 | B.1.462 | 0.007246 |
ORF1ab/nsp3 | 1198 | T1198I | aCa | aTa | 1 | 1 | B.1.468 | 0.005714 |
ORF1ab/nsp3 | 1198 | T1198I | aCa | aTa | 1 | 1 | B.1.470 | 0.001404 |
ORF1ab/nsp3 | 1198 | T1198I | aCa | aTa | 1 | 1 | B.1.517 | 0.000427 |
ORF1ab/nsp3 | 1198 | T1198I | aCa | aTa | 1 | 1 | B.1.525 | 0.000113 |
ORF1ab/nsp3 | 1198 | T1198K | aCa | aAa | 1 | 1 | B.1.526 | 0.000024 |
ORF1ab/nsp3 | 1198 | T1198I | aCa | aTa | 1 | 1 | B.1.544 | 0.006024 |
ORF1ab/nsp3 | 1198 | T1198I | aCa | aTa | 1 | 1 | B.1.588 | 0.00091 |
ORF1ab/nsp3 | 1198 | T1198S | Aca | Tca | 1 | 1 | B.1.595 | 0.000261 |
ORF1ab/nsp3 | 1198 | T1198T | acA | acG | 1 | 1 | B.1.596 | 0.000087 |
ORF1ab/nsp3 | 1198 | T1198I | aCa | aTa | 1 | 1 | B.1.596.1 | 0.009346 |
ORF1ab/nsp3 | 1198 | T1198I | aCa | aTa | 1 | 1 | B.1.605 | 0.005952 |
ORF1ab/nsp3 | 1198 | T1198I | aCa | aTa | 1 | 1 | B.1.609 | 0.000479 |
ORF1ab/nsp3 | 1198 | T1198I | aCa | aTa | 1 | 1 | B.1.612 | 0.002653 |
ORF1ab/nsp3 | 1198 | T1198S | Aca | Tca | 1 | 1 | B.1.617.2 | 0.000004 |
ORF1ab/nsp3 | 1198 | T1198I | aCa | aTa | 1 | 1 | B.1.620 | 0.000946 |
ORF1ab/nsp3 | 1198 | T1198K | aCa | aAa | 1 | 1 | B.1.623 | 0.000536 |
ORF1ab/nsp3 | 1198 | T1198del | ACA | --- | 1 | 1 | B.1.630 | 0.005236 |
ORF1ab/nsp3 | 1198 | T1198del1 | aCa | a-a | 1 | 1 | B.1.637 | 0.000073 |
ORF1ab/nsp3 | 1198 | T1198I | aCa | aTa | 1 | 1 | B.1.9.4 | 0.006135 |
ORF1ab/nsp3 | 1198 | T1198I | aCa | aTa | 1 | 1 | B.11 | 0.005128 |
ORF1ab/nsp3 | 1198 | T1198T | acA | acG | 1 | 1 | B.19 | 0.037037 |
ORF1ab/nsp3 | 1198 | T1198T | acA | acG | 1 | 1 | B.20 | 0.023256 |
ORF1ab/nsp3 | 1198 | T1198I | aCa | aTa | 1 | 1 | B.52 | 0.010101 |
ORF1ab/nsp3 | 1198 | T1198I | aCa | aTa | 1 | 1 | C.1.2 | 0.004255 |
ORF1ab/nsp3 | 1198 | T1198K | aCa | aAa | 1 | 1 | C.11 | 0.010638 |
ORF1ab/nsp3 | 1198 | T1198I | aCa | aTa | 1 | 1 | C.14 | 0.004329 |
ORF1ab/nsp3 | 1198 | T1198del | ACA | --- | 1 | 1 | C.37 | 0.000116 |
ORF1ab/nsp3 | 1198 | T1198I | aCa | aTa | 1 | 1 | C.40 | 0.027778 |
ORF1ab/nsp3 | 1198 | T1198del1 | acA | ac- | 1 | 1 | D.2 | 0.000075 |
ORF1ab/nsp3 | 1198 | T1198K | aCa | aAa | 1 | 1 | D.2 | 0.000075 |
ORF1ab/nsp3 | 1198 | T1198A | Aca | Gca | 1 | 1 | D.2 | 0.000075 |
ORF1ab/nsp3 | 1198 | T1198I | aCa | aTa | 1 | 1 | N.3 | 0.005814 |
ORF1ab/nsp3 | 1198 | T1198I | aCa | aTa | 1 | 1 | N.5 | 0.001767 |
ORF1ab/nsp3 | 1198 | T1198S | Aca | Tca | 1 | 1 | P.1 | 0.000016 |
ORF1ab/nsp3 | 1198 | T1198del | ACA | --- | 1 | 1 | P.1 | 0.000016 |
ORF1ab/nsp3 | 1198 | T1198A | Aca | Gca | 1 | 1 | P.1 | 0.000016 |
ORF1ab/nsp3 | 1198 | T1198I | aCa | aTa | 1 | 1 | P.1.12 | 0.000484 |
ORF1ab/nsp3 | 1198 | T1198K | aCa | aAa | 1 | 1 | P.1.13 | 0.000898 |
ORF1ab/nsp3 | 1198 | T1198I | aCa | aTa | 1 | 1 | P.1.17 | 0.000162 |
ORF1ab/nsp3 | 1198 | T1198K | aCa | aAa | 1 | 1 | P.1.2 | 0.001156 |
ORF1ab/nsp3 | 1198 | T1198I | aCa | aTa | 1 | 1 | P.1.6 | 0.001946 |
ORF1ab/nsp3 | 1198 | T1198I | aCa | aTa | 1 | 1 | P.1.7 | 0.000319 |
ORF1ab/nsp3 | 1198 | T1198I | aCa | aTa | 1 | 1 | Q.2 | 0.000613 |
ORF1ab/nsp3 | 1198 | T1198del | ACA | --- | 1 | 1 | Q.8 | 0.000165 |
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CoV-GLUE is still in development. CoV-GLUE was originally developed as part of COG-UK by Josh Singer using the GLUE framework at the MRC-University of Glasgow Centre for Virus Research (CVR). In 2021 it was redeveloped by Richard Orton to scale to the millions of genome sequences available. We acknowledge support from the MRC (MC_UU_12014/12), WT (220977/Z/20/Z) and UKRI G2P (MR/W005611/1). Please contact Richard Orton with any queries: Richard.Orton@glasgow.ac.uk
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