CoV-GLUE | Mutations | Mutation

CoV-GLUE Mutation: ORF = ORF1ab/nsp3 : CodonNum = 1197

Details of the codons used for the mutation across all lineages (CodonProp is the proportion each codon is used for this AA mutation):

ORFCodonNumMutORF1abMutMutTypeRefCodonMutCodonAACountCodonCountCodonPropGenome Position
ORF1ab/nsp31197S1197SS2015SsynagCagT212492124916308-6310
ORF1ab/nsp31197S1197RS2015RnonsynagCagA151814030.9242426308-6310
ORF1ab/nsp31197S1197RS2015RnonsynAgcCgc15181030.06785246308-6310
ORF1ab/nsp31197S1197RS2015RnonsynagCagG1518120.007905146308-6310
ORF1ab/nsp31197S1197IS2015InonsynaGcaTc1345134516308-6310
ORF1ab/nsp31197S1197GS2015GnonsynAgcGgc4444430.9977486308-6310
ORF1ab/nsp31197S1197GS2015GnonsynAgCGgA44410.002252256308-6310
ORF1ab/nsp31197S1197NS2015NnonsynaGcaAc4354340.9977016308-6310
ORF1ab/nsp31197S1197NS2015NnonsynaGCaAT43510.002298856308-6310
ORF1ab/nsp31197S1197TS2015TnonsynaGcaCc14714716308-6310
ORF1ab/nsp31197S1197delS2015deldelAGC---161616308-6310
ORF1ab/nsp31197S1197CS2015CnonsynAgcTgc101016308-6310
ORF1ab/nsp31197S1197KS2015KnonsynaGCaAA5516308-6310
ORF1ab/nsp31197S1197del1S2015del1delAgc-gc420.56308-6310
ORF1ab/nsp31197S1197del1S2015del1delagCag-410.256308-6310
ORF1ab/nsp31197S1197del1S2015del1delaGca-c410.256308-6310
ORF1ab/nsp31197S1197HS2015HnonsynAGCCAT1116308-6310
ORF1ab/nsp31197S1197YS2015YnonsynAGcTAc1116308-6310

Details of the mutation no within lineages (LineageCodonProp is the proportion the codon is observed at, at this particular site, on each lineage):

ORFCodonNumMutRefCodonMutCodonCodonCountAACountLineageLineageCodonProp
ORF1ab/nsp31197S1197SagCagT2124921249All0.004064
ORF1ab/nsp31197S1197SagCagT1352113521AY.46.60.976316
ORF1ab/nsp31197S1197SagCagT23552355B.1.1.70.002108
ORF1ab/nsp31197S1197RagCagA14031518All0.000268
ORF1ab/nsp31197S1197RAgcCgc1031518All0.00002
ORF1ab/nsp31197S1197RagCagG121518All0.000002
ORF1ab/nsp31197S1197IaGcaTc13451345All0.000257
ORF1ab/nsp31197S1197RagCagA10971097B.6.60.975111
ORF1ab/nsp31197S1197SagCagT856856AY.260.024234
ORF1ab/nsp31197S1197SagCagT680680B.1.1770.008954
ORF1ab/nsp31197S1197IaGcaTc466466AY.50.009623
ORF1ab/nsp31197S1197GAgcGgc443444All0.000085
ORF1ab/nsp31197S1197GAgCGgA1444All0
ORF1ab/nsp31197S1197NaGcaAc434435All0.000083
ORF1ab/nsp31197S1197NaGCaAT1435All0
ORF1ab/nsp31197S1197IaGcaTc300300AY.740.034694
ORF1ab/nsp31197S1197SagCagT287287AY.40.000447
ORF1ab/nsp31197S1197SagCagT240240AY.430.001063
ORF1ab/nsp31197S1197SagCagT239239AY.1140.055235
ORF1ab/nsp31197S1197SagCagT225225B.1.360.032828
ORF1ab/nsp31197S1197SagCagT191191B.1.617.20.000719
ORF1ab/nsp31197S1197SagCagT188188B.10.001722
ORF1ab/nsp31197S1197SagCagT183183AY.960.379668
ORF1ab/nsp31197S1197SagCagT183183B.1.1600.005707
ORF1ab/nsp31197S1197RagCagA180181B.60.163785
ORF1ab/nsp31197S1197RAgcCgc1181B.60.00091
ORF1ab/nsp31197S1197SagCagT170170AY.360.025196
ORF1ab/nsp31197S1197TaGcaCc147147All0.000028
ORF1ab/nsp31197S1197NaGcaAc144144AY.430.000638
ORF1ab/nsp31197S1197SagCagT144144B.1.10.002612
ORF1ab/nsp31197S1197SagCagT135135B.1.1.2280.411585
ORF1ab/nsp31197S1197SagCagT121121AY.920.03476
ORF1ab/nsp31197S1197SagCagT118118B.1.20.001039
ORF1ab/nsp31197S1197GAgcGgc114114B.1.617.20.000429
ORF1ab/nsp31197S1197SagCagT105105P.10.001654
ORF1ab/nsp31197S1197TaGcaCc102102B.1.1.70.000091
ORF1ab/nsp31197S1197SagCagT9595AY.1030.00059
ORF1ab/nsp31197S1197SagCagT9393AY.440.000566
ORF1ab/nsp31197S1197IaGcaTc8888B.1.1.70.000079
ORF1ab/nsp31197S1197SagCagT6868AY.98.10.003293
ORF1ab/nsp31197S1197SagCagT6464AY.450.007788
ORF1ab/nsp31197S1197GAgcGgc5959AY.40.000092
ORF1ab/nsp31197S1197RagCagA5054B.1.1.70.000045
ORF1ab/nsp31197S1197RAgcCgc454B.1.1.70.000004
ORF1ab/nsp31197S1197NaGcaAc5353AY.250.000319
ORF1ab/nsp31197S1197SagCagT5353B.1.4290.001247
ORF1ab/nsp31197S1197NaGcaAc4748B.1.1.70.000042
ORF1ab/nsp31197S1197NaGCaAT148B.1.1.70.000001
ORF1ab/nsp31197S1197SagCagT4343AY.750.002409
ORF1ab/nsp31197S1197SagCagT4040AY.470.001244
ORF1ab/nsp31197S1197IaGcaTc4040B.1.617.20.000151
ORF1ab/nsp31197S1197SagCagT3939P.1.140.001864
ORF1ab/nsp31197S1197IaGcaTc3838AY.40.000059
ORF1ab/nsp31197S1197IaGcaTc3737AY.750.002073
ORF1ab/nsp31197S1197GAgcGgc3636AY.1210.004871
ORF1ab/nsp31197S1197IaGcaTc3535B.1.1.500.023761
ORF1ab/nsp31197S1197RAgcCgc3434B.1.1.2200.063197
ORF1ab/nsp31197S1197SagCagT3232B.1.1.3321
ORF1ab/nsp31197S1197SagCagT3232B.1.6210.002833
ORF1ab/nsp31197S1197IaGcaTc3030AY.250.00018
ORF1ab/nsp31197S1197IaGcaTc2929AY.30.000288
ORF1ab/nsp31197S1197GAgcGgc2929B.10.000266
ORF1ab/nsp31197S1197IaGcaTc2929P.1.70.009259
ORF1ab/nsp31197S1197GAgcGgc2828AY.430.000124
ORF1ab/nsp31197S1197NaGcaAc2727B.1.617.20.000102
ORF1ab/nsp31197S1197NaGcaAc2525AY.40.000039
ORF1ab/nsp31197S1197SagCagT2525B.1.177.770.018155
ORF1ab/nsp31197S1197TaGcaCc2525B.1.4590.102041
ORF1ab/nsp31197S1197SagCagT2525C.370.002902
ORF1ab/nsp31197S1197SagCagT2424AY.50.000496
ORF1ab/nsp31197S1197SagCagT2323B.1.5260.000541
ORF1ab/nsp31197S1197GAgcGgc2222AY.1130.003133
ORF1ab/nsp31197S1197RagCagA2122B.6.40.954545
ORF1ab/nsp31197S1197RagCagG122B.6.40.045455
ORF1ab/nsp31197S1197SagCagT2121B.1.1.500.014257
ORF1ab/nsp31197S1197GAgcGgc2121B.1.1.70.000019
ORF1ab/nsp31197S1197SagCagT2020A.10.005637
ORF1ab/nsp31197S1197IaGcaTc2020AY.430.000089
ORF1ab/nsp31197S1197SagCagT2020B.1.3510.000595
ORF1ab/nsp31197S1197NaGcaAc1919AY.1020.000504
ORF1ab/nsp31197S1197SagCagT1818AY.380.008987
ORF1ab/nsp31197S1197NaGcaAc1818B.1.3510.000535
ORF1ab/nsp31197S1197SagCagT1818B.1.428.30.230769
ORF1ab/nsp31197S1197SagCagT1717AY.30.000169
ORF1ab/nsp31197S1197delAGC---1616All0.000003
ORF1ab/nsp31197S1197RagCagA1616B.1.160.160.01487
ORF1ab/nsp31197S1197GAgcGgc1616B.1.20.000141
ORF1ab/nsp31197S1197SagCagT1515AY.540.00143
ORF1ab/nsp31197S1197IaGcaTc1515AY.9.20.000551
ORF1ab/nsp31197S1197RagCagA1115B.10.000101
ORF1ab/nsp31197S1197RAgcCgc315B.10.000027
ORF1ab/nsp31197S1197RagCagG115B.10.000009
ORF1ab/nsp31197S1197NaGcaAc1515B.1.20.000132
ORF1ab/nsp31197S1197SagCagT1515P.1.100.004042
ORF1ab/nsp31197S1197IaGcaTc1414AY.440.000085
ORF1ab/nsp31197S1197IaGcaTc1414B.1.10.000254
ORF1ab/nsp31197S1197SagCagT1313AY.4.20.000282
ORF1ab/nsp31197S1197IaGcaTc1313AY.9.10.001088
ORF1ab/nsp31197S1197SagCagT1313B.1.177.210.000994
ORF1ab/nsp31197S1197SagCagT1313B.1.3490.009292
ORF1ab/nsp31197S1197SagCagT1212AY.99.20.001106
ORF1ab/nsp31197S1197IaGcaTc1212B.10.00011
ORF1ab/nsp31197S1197IaGcaTc1212B.1.1.2650.037855
ORF1ab/nsp31197S1197GAgcGgc1111B.1.1.580.05914
ORF1ab/nsp31197S1197SagCagT1111Q.10.00139
ORF1ab/nsp31197S1197CAgcTgc1010All0.000002
ORF1ab/nsp31197S1197SagCagT1010AY.1090.007396
ORF1ab/nsp31197S1197GAgcGgc1010AY.440.000061
ORF1ab/nsp31197S1197SagCagT1010B.1.1.2770.007587
ORF1ab/nsp31197S1197NaGcaAc1010B.1.4260.010091
ORF1ab/nsp31197S1197SagCagT1010B.1.4270.000505
ORF1ab/nsp31197S1197NaGcaAc1010P.10.000158
ORF1ab/nsp31197S1197SagCagT99B.1.1.3060.003946
ORF1ab/nsp31197S1197IaGcaTc99B.1.20.000079
ORF1ab/nsp31197S1197SagCagT99B.1.3890.009018
ORF1ab/nsp31197S1197RAgcCgc89B.1.617.20.00003
ORF1ab/nsp31197S1197RagCagA19B.1.617.20.000004
ORF1ab/nsp31197S1197GAgcGgc88AY.250.000048
ORF1ab/nsp31197S1197IaGcaTc88AY.290.000126
ORF1ab/nsp31197S1197IaGcaTc88AY.390.000198
ORF1ab/nsp31197S1197SagCagT88B.1.1.610.070175
ORF1ab/nsp31197S1197SagCagT88B.1.177.460.007346
ORF1ab/nsp31197S1197IaGcaTc88P.10.000126
ORF1ab/nsp31197S1197SagCagT77A.2.50.003493
ORF1ab/nsp31197S1197SagCagT77AY.410.002058
ORF1ab/nsp31197S1197RAgcCgc77AY.670.00325
ORF1ab/nsp31197S1197SagCagT77B.1.2340.000924
ORF1ab/nsp31197S1197SagCagT77B.1.2430.000487
ORF1ab/nsp31197S1197SagCagT77B.1.258.170.000728
ORF1ab/nsp31197S1197SagCagT77B.1.2800.05
ORF1ab/nsp31197S1197SagCagT77B.1.36.170.003458
ORF1ab/nsp31197S1197SagCagT77B.1.6370.000512
ORF1ab/nsp31197S1197IaGcaTc66AY.1030.000037
ORF1ab/nsp31197S1197GAgcGgc66AY.1030.000037
ORF1ab/nsp31197S1197RAgcCgc66AY.1210.000812
ORF1ab/nsp31197S1197GAgcGgc66AY.340.000582
ORF1ab/nsp31197S1197RagCagG56AY.390.000124
ORF1ab/nsp31197S1197RAgcCgc16AY.390.000025
ORF1ab/nsp31197S1197NaGcaAc66AY.440.000037
ORF1ab/nsp31197S1197SagCagT66B.1.1.3260.010563
ORF1ab/nsp31197S1197IaGcaTc66B.1.1600.000187
ORF1ab/nsp31197S1197SagCagT66B.1.2580.000399
ORF1ab/nsp31197S1197IaGcaTc66B.1.36.290.003104
ORF1ab/nsp31197S1197IaGcaTc66B.1.4290.000141
ORF1ab/nsp31197S1197SagCagT66B.1.5750.00182
ORF1ab/nsp31197S1197SagCagT66B.1.5950.001566
ORF1ab/nsp31197S1197KaGCaAA55All0.000001
ORF1ab/nsp31197S1197SagCagT55AY.1200.000186
ORF1ab/nsp31197S1197SagCagT55AY.120.10.001605
ORF1ab/nsp31197S1197SagCagT55AY.230.000349
ORF1ab/nsp31197S1197GAgcGgc55AY.590.002648
ORF1ab/nsp31197S1197GAgcGgc55AY.620.002179
ORF1ab/nsp31197S1197GAgcGgc55AY.90.000338
ORF1ab/nsp31197S1197SagCagT55AY.980.000395
ORF1ab/nsp31197S1197NaGcaAc55B.10.000046
ORF1ab/nsp31197S1197RAgcCgc35B.1.10.000054
ORF1ab/nsp31197S1197RagCagA25B.1.10.000036
ORF1ab/nsp31197S1197IaGcaTc55B.1.1.2840.000537
ORF1ab/nsp31197S1197NaGcaAc55B.1.1770.000066
ORF1ab/nsp31197S1197SagCagT55B.1.177.440.002595
ORF1ab/nsp31197S1197SagCagT55B.1.177.600.001092
ORF1ab/nsp31197S1197SagCagT55B.1.177.860.000917
ORF1ab/nsp31197S1197GAgcGgc55B.1.4270.000252
ORF1ab/nsp31197S1197SagCagT55B.1.5090.004329
ORF1ab/nsp31197S1197KaGCaAA55B.6.60.004444
ORF1ab/nsp31197S1197RagCagA35P.10.000047
ORF1ab/nsp31197S1197RAgcCgc25P.10.000032
ORF1ab/nsp31197S1197NaGcaAc55P.1.70.001596
ORF1ab/nsp31197S1197del1Agc-gc24All0
ORF1ab/nsp31197S1197del1agCag-14All0
ORF1ab/nsp31197S1197del1aGca-c14All0
ORF1ab/nsp31197S1197IaGcaTc44AY.1020.000106
ORF1ab/nsp31197S1197SagCagT44AY.250.000024
ORF1ab/nsp31197S1197IaGcaTc44AY.270.000259
ORF1ab/nsp31197S1197SagCagT44AY.330.000267
ORF1ab/nsp31197S1197TaGcaCc44AY.40.000006
ORF1ab/nsp31197S1197SagCagT44AY.4.40.001637
ORF1ab/nsp31197S1197SagCagT44AY.580.00363
ORF1ab/nsp31197S1197SagCagT44AY.810.007968
ORF1ab/nsp31197S1197SagCagT44AY.9.20.000147
ORF1ab/nsp31197S1197SagCagT44B.1.1.3040.011236
ORF1ab/nsp31197S1197SagCagT44B.1.1.370.000771
ORF1ab/nsp31197S1197SagCagT44B.1.1.5260.014184
ORF1ab/nsp31197S1197SagCagT44B.1.1110.0047
ORF1ab/nsp31197S1197SagCagT44B.1.177.230.012945
ORF1ab/nsp31197S1197SagCagT44B.1.2060.003263
ORF1ab/nsp31197S1197SagCagT44B.1.214.20.002398
ORF1ab/nsp31197S1197SagCagT44B.1.2210.000284
ORF1ab/nsp31197S1197SagCagT44B.1.2400.000862
ORF1ab/nsp31197S1197IaGcaTc44B.1.2430.000278
ORF1ab/nsp31197S1197SagCagT44B.1.4560.013072
ORF1ab/nsp31197S1197SagCagT44B.1.4690.01444
ORF1ab/nsp31197S1197SagCagT44B.1.5960.000349
ORF1ab/nsp31197S1197SagCagT44B.1.6000.023392
ORF1ab/nsp31197S1197SagCagT44D.20.0003
ORF1ab/nsp31197S1197SagCagT44P.20.000747
ORF1ab/nsp31197S1197GAgcGgc33AY.1000.000138
ORF1ab/nsp31197S1197SagCagT33AY.1130.000427
ORF1ab/nsp31197S1197IaGcaTc33AY.1160.00086
ORF1ab/nsp31197S1197RagCagA23AY.200.000078
ORF1ab/nsp31197S1197RAgcCgc13AY.200.000039
ORF1ab/nsp31197S1197GAgcGgc33AY.290.000047
ORF1ab/nsp31197S1197RAgcCgc23AY.30.00002
ORF1ab/nsp31197S1197RagCagA13AY.30.00001
ORF1ab/nsp31197S1197SagCagT33AY.320.001597
ORF1ab/nsp31197S1197IaGcaTc33AY.330.0002
ORF1ab/nsp31197S1197RAgcCgc23AY.40.000003
ORF1ab/nsp31197S1197RagCagA13AY.40.000002
ORF1ab/nsp31197S1197SagCagT33AY.460.000312
ORF1ab/nsp31197S1197RagCagA33B0.000383
ORF1ab/nsp31197S1197TaGcaCc33B.10.000027
ORF1ab/nsp31197S1197SagCagT33B.1.1.10.00098
ORF1ab/nsp31197S1197SagCagT33B.1.1.1530.003286
ORF1ab/nsp31197S1197SagCagT33B.1.1.250.001706
ORF1ab/nsp31197S1197NaGcaAc33B.1.1.2840.000322
ORF1ab/nsp31197S1197IaGcaTc33B.1.1.3480.002389
ORF1ab/nsp31197S1197delAGC---33B.1.1.70.000003
ORF1ab/nsp31197S1197RAgcCgc33B.1.20.000026
ORF1ab/nsp31197S1197IaGcaTc33B.1.2400.000647
ORF1ab/nsp31197S1197SagCagT33B.1.3110.000824
ORF1ab/nsp31197S1197IaGcaTc33B.1.3510.000089
ORF1ab/nsp31197S1197SagCagT33B.1.36.100.014354
ORF1ab/nsp31197S1197SagCagT33B.1.36.80.003
ORF1ab/nsp31197S1197SagCagT33B.1.4250.008982
ORF1ab/nsp31197S1197SagCagT33B.1.5240.004219
ORF1ab/nsp31197S1197SagCagT33B.1.5250.000339
ORF1ab/nsp31197S1197SagCagT33B.1.6090.001438
ORF1ab/nsp31197S1197GAgcGgc33P.20.00056
ORF1ab/nsp31197S1197SagCagT33Q.30.000435
ORF1ab/nsp31197S1197SagCagT22A.2.5.20.003145
ORF1ab/nsp31197S1197GAgcGgc22AY.1020.000053
ORF1ab/nsp31197S1197SagCagT22AY.1020.000053
ORF1ab/nsp31197S1197RAgcCgc22AY.1020.000053
ORF1ab/nsp31197S1197RagCagG22AY.1190.000071
ORF1ab/nsp31197S1197GAgcGgc22AY.1190.000071
ORF1ab/nsp31197S1197RagCagA22AY.20.000712
ORF1ab/nsp31197S1197NaGcaAc22AY.200.000078
ORF1ab/nsp31197S1197GAgcGgc22AY.230.000139
ORF1ab/nsp31197S1197RAgcCgc22AY.250.000012
ORF1ab/nsp31197S1197CAgcTgc22AY.30.00002
ORF1ab/nsp31197S1197SagCagT22AY.370.000632
ORF1ab/nsp31197S1197NaGcaAc22AY.390.000049
ORF1ab/nsp31197S1197SagCagT22AY.39.10.000079
ORF1ab/nsp31197S1197RAgcCgc22AY.4.20.000043
ORF1ab/nsp31197S1197SagCagT22AY.4.30.001684
ORF1ab/nsp31197S1197SagCagT22AY.4.50.000215
ORF1ab/nsp31197S1197NaGcaAc22AY.420.00008
ORF1ab/nsp31197S1197RagCagA22AY.440.000012
ORF1ab/nsp31197S1197NaGcaAc22AY.450.000243
ORF1ab/nsp31197S1197GAgcGgc22AY.460.000208
ORF1ab/nsp31197S1197IaGcaTc22AY.470.000062
ORF1ab/nsp31197S1197NaGcaAc22AY.50.000041
ORF1ab/nsp31197S1197IaGcaTc22AY.520.001629
ORF1ab/nsp31197S1197GAgcGgc22AY.60.000082
ORF1ab/nsp31197S1197RAgcCgc22AY.740.000231
ORF1ab/nsp31197S1197IaGcaTc22AY.75.10.000361
ORF1ab/nsp31197S1197SagCagT22AY.870.001665
ORF1ab/nsp31197S1197SagCagT22AY.9.10.000167
ORF1ab/nsp31197S1197SagCagT22AY.9.2.10.003953
ORF1ab/nsp31197S1197IaGcaTc22AY.910.001461
ORF1ab/nsp31197S1197IaGcaTc22AY.980.000158
ORF1ab/nsp31197S1197SagCagT22B0.000256
ORF1ab/nsp31197S1197del1agCag-12B.10.000009
ORF1ab/nsp31197S1197del1aGca-c12B.10.000009
ORF1ab/nsp31197S1197GAgcGgc22B.1.10.000036
ORF1ab/nsp31197S1197SagCagT22B.1.1.1980.002937
ORF1ab/nsp31197S1197NaGcaAc22B.1.1.2220.000408
ORF1ab/nsp31197S1197GAgcGgc22B.1.1.2840.000215
ORF1ab/nsp31197S1197SagCagT22B.1.1.3720.001377
ORF1ab/nsp31197S1197RAgcCgc22B.1.1.3860.133333
ORF1ab/nsp31197S1197SagCagT22B.1.1.390.001019
ORF1ab/nsp31197S1197SagCagT22B.1.1.4480.004065
ORF1ab/nsp31197S1197GAgcGgc22B.1.1.4870.011173
ORF1ab/nsp31197S1197SagCagT22B.1.130.004751
ORF1ab/nsp31197S1197IaGcaTc22B.1.160.110.011429
ORF1ab/nsp31197S1197SagCagT22B.1.160.160.001859
ORF1ab/nsp31197S1197IaGcaTc22B.1.1770.000026
ORF1ab/nsp31197S1197SagCagT22B.1.177.170.001642
ORF1ab/nsp31197S1197SagCagT22B.1.1920.018519
ORF1ab/nsp31197S1197IaGcaTc22B.1.2210.000142
ORF1ab/nsp31197S1197GAgcGgc22B.1.2210.000142
ORF1ab/nsp31197S1197IaGcaTc22B.1.2340.000264
ORF1ab/nsp31197S1197IaGcaTc22B.1.2580.000133
ORF1ab/nsp31197S1197NaGcaAc22B.1.258.170.000208
ORF1ab/nsp31197S1197RAgcCgc22B.1.3360.004878
ORF1ab/nsp31197S1197SagCagT22B.1.351.20.000605
ORF1ab/nsp31197S1197SagCagT22B.1.351.30.001753
ORF1ab/nsp31197S1197IaGcaTc22B.1.36.10.002281
ORF1ab/nsp31197S1197SagCagT22B.1.36.220.002415
ORF1ab/nsp31197S1197SagCagT22B.1.36.290.001035
ORF1ab/nsp31197S1197SagCagT22B.1.36.360.001204
ORF1ab/nsp31197S1197NaGcaAc22B.1.3690.00057
ORF1ab/nsp31197S1197SagCagT22B.1.4110.007407
ORF1ab/nsp31197S1197SagCagT22B.1.4590.008163
ORF1ab/nsp31197S1197RagCagA22B.1.466.20.000782
ORF1ab/nsp31197S1197SagCagT22B.1.564.10.003155
ORF1ab/nsp31197S1197SagCagT22B.1.5650.001621
ORF1ab/nsp31197S1197IaGcaTc22B.1.617.10.000258
ORF1ab/nsp31197S1197TaGcaCc22B.1.617.20.000008
ORF1ab/nsp31197S1197GAgcGgc22B.1.6210.000177
ORF1ab/nsp31197S1197SagCagT22B.1.780.017094
ORF1ab/nsp31197S1197SagCagT22B.60.00182
ORF1ab/nsp31197S1197SagCagT22C.160.002121
ORF1ab/nsp31197S1197GAgcGgc22C.36.30.001134
ORF1ab/nsp31197S1197SagCagT22P.1.170.000324
ORF1ab/nsp31197S1197SagCagT22P.1.20.002312
ORF1ab/nsp31197S1197SagCagT22P.1.70.000639
ORF1ab/nsp31197S1197RagCagA22Q.80.00033
ORF1ab/nsp31197S1197SagCagT11A.180.05
ORF1ab/nsp31197S1197IaGcaTc11A.20.000662
ORF1ab/nsp31197S1197SagCagT11A.210.00277
ORF1ab/nsp31197S1197SagCagT11A.50.001923
ORF1ab/nsp31197S1197YAGcTAc11All0
ORF1ab/nsp31197S1197HAGCCAT11All0
ORF1ab/nsp31197S1197IaGcaTc11AY.1000.000046
ORF1ab/nsp31197S1197NaGcaAc11AY.1000.000046
ORF1ab/nsp31197S1197SagCagT11AY.1010.00049
ORF1ab/nsp31197S1197delAGC---11AY.1010.00049
ORF1ab/nsp31197S1197CAgcTgc11AY.1030.000006
ORF1ab/nsp31197S1197RAgcCgc11AY.1030.000006
ORF1ab/nsp31197S1197NaGcaAc11AY.1030.000006
ORF1ab/nsp31197S1197RAgcCgc11AY.1130.000142
ORF1ab/nsp31197S1197GAgcGgc11AY.1160.000287
ORF1ab/nsp31197S1197SagCagT11AY.1170.000085
ORF1ab/nsp31197S1197RAgcCgc11AY.1180.000063
ORF1ab/nsp31197S1197SagCagT11AY.1180.000063
ORF1ab/nsp31197S1197IaGcaTc11AY.1180.000063
ORF1ab/nsp31197S1197GAgcGgc11AY.1180.000063
ORF1ab/nsp31197S1197NaGcaAc11AY.1190.000035
ORF1ab/nsp31197S1197IaGcaTc11AY.1200.000037
ORF1ab/nsp31197S1197GAgcGgc11AY.120.2.10.000498
ORF1ab/nsp31197S1197IaGcaTc11AY.130.000161
ORF1ab/nsp31197S1197RAgcCgc11AY.140.000088
ORF1ab/nsp31197S1197SagCagT11AY.16.10.00047
ORF1ab/nsp31197S1197SagCagT11AY.200.000039
ORF1ab/nsp31197S1197TaGcaCc11AY.250.000006
ORF1ab/nsp31197S1197delAGC---11AY.250.000006
ORF1ab/nsp31197S1197IaGcaTc11AY.260.000028
ORF1ab/nsp31197S1197RAgcCgc11AY.290.000016
ORF1ab/nsp31197S1197GAgcGgc11AY.30.00001
ORF1ab/nsp31197S1197GAgcGgc11AY.3.10.000085
ORF1ab/nsp31197S1197RagCagG11AY.300.000396
ORF1ab/nsp31197S1197IaGcaTc11AY.300.000396
ORF1ab/nsp31197S1197NaGcaAc11AY.310.018519
ORF1ab/nsp31197S1197GAgcGgc11AY.330.000067
ORF1ab/nsp31197S1197NaGcaAc11AY.330.000067
ORF1ab/nsp31197S1197NaGcaAc11AY.370.000316
ORF1ab/nsp31197S1197NaGcaAc11AY.380.000499
ORF1ab/nsp31197S1197GAgcGgc11AY.390.000025
ORF1ab/nsp31197S1197CAgcTgc11AY.390.000025
ORF1ab/nsp31197S1197CAgcTgc11AY.40.000002
ORF1ab/nsp31197S1197TaGcaCc11AY.4.20.000022
ORF1ab/nsp31197S1197GAgcGgc11AY.4.20.000022
ORF1ab/nsp31197S1197SagCagT11AY.4.2.10.000149
ORF1ab/nsp31197S1197NaGcaAc11AY.410.000294
ORF1ab/nsp31197S1197SagCagT11AY.420.00004
ORF1ab/nsp31197S1197TaGcaCc11AY.430.000004
ORF1ab/nsp31197S1197RAgcCgc11AY.430.000004
ORF1ab/nsp31197S1197HAGCCAT11AY.440.000006
ORF1ab/nsp31197S1197GAgcGgc11AY.450.000122
ORF1ab/nsp31197S1197RagCagG11AY.460.000104
ORF1ab/nsp31197S1197SagCagT11AY.46.10.001027
ORF1ab/nsp31197S1197GAgcGgc11AY.46.40.000165
ORF1ab/nsp31197S1197SagCagT11AY.46.50.000198
ORF1ab/nsp31197S1197GAgcGgc11AY.470.000031
ORF1ab/nsp31197S1197NaGcaAc11AY.480.000465
ORF1ab/nsp31197S1197RAgcCgc11AY.50.000021
ORF1ab/nsp31197S1197GAgcGgc11AY.50.000021
ORF1ab/nsp31197S1197TaGcaCc11AY.550.000917
ORF1ab/nsp31197S1197SagCagT11AY.590.00053
ORF1ab/nsp31197S1197NaGcaAc11AY.590.00053
ORF1ab/nsp31197S1197IaGcaTc11AY.60.000041
ORF1ab/nsp31197S1197RAgcCgc11AY.60.000041
ORF1ab/nsp31197S1197IaGcaTc11AY.610.000105
ORF1ab/nsp31197S1197IaGcaTc11AY.620.000436
ORF1ab/nsp31197S1197delAGC---11AY.660.00107
ORF1ab/nsp31197S1197NaGcaAc11AY.670.000464
ORF1ab/nsp31197S1197IaGcaTc11AY.670.000464
ORF1ab/nsp31197S1197SagCagT11AY.680.000274
ORF1ab/nsp31197S1197NaGcaAc11AY.7.10.000113
ORF1ab/nsp31197S1197NaGcaAc11AY.710.000475
ORF1ab/nsp31197S1197RagCagA11AY.750.000056
ORF1ab/nsp31197S1197GAgcGgc11AY.750.000056
ORF1ab/nsp31197S1197SagCagT11AY.75.10.00018
ORF1ab/nsp31197S1197IaGcaTc11AY.770.001127
ORF1ab/nsp31197S1197IaGcaTc11AY.840.000437
ORF1ab/nsp31197S1197delAGC---11AY.850.000427
ORF1ab/nsp31197S1197SagCagT11AY.930.000273
ORF1ab/nsp31197S1197TaGcaCc11AY.980.000079
ORF1ab/nsp31197S1197GAgcGgc11AY.980.000079
ORF1ab/nsp31197S1197TaGcaCc11AY.98.10.000048
ORF1ab/nsp31197S1197delAGC---11AY.990.001049
ORF1ab/nsp31197S1197GAgcGgc11B0.000128
ORF1ab/nsp31197S1197delAGC---11B.10.000009
ORF1ab/nsp31197S1197CAgcTgc11B.10.000009
ORF1ab/nsp31197S1197NaGcaAc11B.1.10.000018
ORF1ab/nsp31197S1197YAGcTAc11B.1.10.000018
ORF1ab/nsp31197S1197CAgcTgc11B.1.10.000018
ORF1ab/nsp31197S1197GAgcGgc11B.1.1.1480.008772
ORF1ab/nsp31197S1197del1Agc-gc11B.1.1.1690.018182
ORF1ab/nsp31197S1197SagCagT11B.1.1.1860.003436
ORF1ab/nsp31197S1197SagCagT11B.1.1.1920.002309
ORF1ab/nsp31197S1197IaGcaTc11B.1.1.2140.000055
ORF1ab/nsp31197S1197SagCagT11B.1.1.2160.00089
ORF1ab/nsp31197S1197CAgcTgc11B.1.1.2220.000204
ORF1ab/nsp31197S1197TaGcaCc11B.1.1.2680.014925
ORF1ab/nsp31197S1197IaGcaTc11B.1.1.280.000311
ORF1ab/nsp31197S1197SagCagT11B.1.1.280.000311
ORF1ab/nsp31197S1197SagCagT11B.1.1.3030.002762
ORF1ab/nsp31197S1197delAGC---11B.1.1.3150.008475
ORF1ab/nsp31197S1197NaGcaAc11B.1.1.3180.000302
ORF1ab/nsp31197S1197SagCagT11B.1.1.3180.000302
ORF1ab/nsp31197S1197IaGcaTc11B.1.1.3200.018182
ORF1ab/nsp31197S1197IaGcaTc11B.1.1.330.000421
ORF1ab/nsp31197S1197SagCagT11B.1.1.330.000421
ORF1ab/nsp31197S1197NaGcaAc11B.1.1.340.013158
ORF1ab/nsp31197S1197delAGC---11B.1.1.3480.000796
ORF1ab/nsp31197S1197IaGcaTc11B.1.1.3690.000446
ORF1ab/nsp31197S1197IaGcaTc11B.1.1.370.000193
ORF1ab/nsp31197S1197NaGcaAc11B.1.1.3730.02381
ORF1ab/nsp31197S1197GAgCGgA11B.1.1.4020.011111
ORF1ab/nsp31197S1197IaGcaTc11B.1.1.4210.030303
ORF1ab/nsp31197S1197NaGcaAc11B.1.1.4330.001425
ORF1ab/nsp31197S1197IaGcaTc11B.1.1.4480.002033
ORF1ab/nsp31197S1197SagCagT11B.1.1.470.005348
ORF1ab/nsp31197S1197CAgcTgc11B.1.1.70.000001
ORF1ab/nsp31197S1197IaGcaTc11B.1.1.700.000341
ORF1ab/nsp31197S1197SagCagT11B.1.1390.000733
ORF1ab/nsp31197S1197RagCagA11B.1.1570.002985
ORF1ab/nsp31197S1197IaGcaTc11B.1.1580.02381
ORF1ab/nsp31197S1197RagCagA11B.1.1600.000031
ORF1ab/nsp31197S1197GAgcGgc11B.1.1770.000013
ORF1ab/nsp31197S1197delAGC---11B.1.1770.000013
ORF1ab/nsp31197S1197GAgcGgc11B.1.177.210.000076
ORF1ab/nsp31197S1197SagCagT11B.1.177.40.000211
ORF1ab/nsp31197S1197RAgcCgc11B.1.177.430.001477
ORF1ab/nsp31197S1197SagCagT11B.1.177.560.000668
ORF1ab/nsp31197S1197SagCagT11B.1.177.570.000281
ORF1ab/nsp31197S1197SagCagT11B.1.177.60.000977
ORF1ab/nsp31197S1197delAGC---11B.1.177.620.001192
ORF1ab/nsp31197S1197SagCagT11B.1.177.730.000566
ORF1ab/nsp31197S1197SagCagT11B.1.177.750.001041
ORF1ab/nsp31197S1197SagCagT11B.1.177.820.000477
ORF1ab/nsp31197S1197SagCagT11B.1.177.830.001481
ORF1ab/nsp31197S1197NaGcaAc11B.1.1780.02381
ORF1ab/nsp31197S1197SagCagT11B.1.1900.01
ORF1ab/nsp31197S1197TaGcaCc11B.1.20.000009
ORF1ab/nsp31197S1197IaGcaTc11B.1.2060.000816
ORF1ab/nsp31197S1197SagCagT11B.1.2080.04
ORF1ab/nsp31197S1197NaGcaAc11B.1.2210.000071
ORF1ab/nsp31197S1197IaGcaTc11B.1.2230.002778
ORF1ab/nsp31197S1197SagCagT11B.1.2270.047619
ORF1ab/nsp31197S1197SagCagT11B.1.2360.002053
ORF1ab/nsp31197S1197GAgcGgc11B.1.2400.000216
ORF1ab/nsp31197S1197SagCagT11B.1.2410.000812
ORF1ab/nsp31197S1197NaGcaAc11B.1.2580.000067
ORF1ab/nsp31197S1197RagCagG11B.1.2580.000067
ORF1ab/nsp31197S1197SagCagT11B.1.2650.001271
ORF1ab/nsp31197S1197SagCagT11B.1.2810.021739
ORF1ab/nsp31197S1197GAgcGgc11B.1.3510.00003
ORF1ab/nsp31197S1197TaGcaCc11B.1.3570.009524
ORF1ab/nsp31197S1197IaGcaTc11B.1.360.000146
ORF1ab/nsp31197S1197RagCagA11B.1.36.100.004785
ORF1ab/nsp31197S1197GAgcGgc11B.1.36.180.00042
ORF1ab/nsp31197S1197SagCagT11B.1.36.190.009259
ORF1ab/nsp31197S1197SagCagT11B.1.36.240.006173
ORF1ab/nsp31197S1197GAgcGgc11B.1.362.20.004717
ORF1ab/nsp31197S1197SagCagT11B.1.3660.004878
ORF1ab/nsp31197S1197IaGcaTc11B.1.3670.000792
ORF1ab/nsp31197S1197SagCagT11B.1.3690.000285
ORF1ab/nsp31197S1197RagCagA11B.1.3750.00082
ORF1ab/nsp31197S1197SagCagT11B.1.3910.001127
ORF1ab/nsp31197S1197SagCagT11B.1.3930.028571
ORF1ab/nsp31197S1197SagCagT11B.1.3980.002976
ORF1ab/nsp31197S1197SagCagT11B.1.3990.001934
ORF1ab/nsp31197S1197SagCagT11B.1.4040.001302
ORF1ab/nsp31197S1197IaGcaTc11B.1.4060.006061
ORF1ab/nsp31197S1197IaGcaTc11B.1.4220.000812
ORF1ab/nsp31197S1197RAgcCgc11B.1.4250.002994
ORF1ab/nsp31197S1197IaGcaTc11B.1.4270.00005
ORF1ab/nsp31197S1197SagCagT11B.1.438.10.000107
ORF1ab/nsp31197S1197SagCagT11B.1.4530.003236
ORF1ab/nsp31197S1197IaGcaTc11B.1.4560.003268
ORF1ab/nsp31197S1197SagCagT11B.1.4620.007246
ORF1ab/nsp31197S1197GAgcGgc11B.1.466.20.000391
ORF1ab/nsp31197S1197NaGcaAc11B.1.4740.001901
ORF1ab/nsp31197S1197SagCagT11B.1.4920.007042
ORF1ab/nsp31197S1197SagCagT11B.1.5030.002488
ORF1ab/nsp31197S1197IaGcaTc11B.1.5210.004975
ORF1ab/nsp31197S1197TaGcaCc11B.1.5250.000113
ORF1ab/nsp31197S1197RAgcCgc11B.1.5250.000113
ORF1ab/nsp31197S1197IaGcaTc11B.1.5260.000024
ORF1ab/nsp31197S1197SagCagT11B.1.5380.008065
ORF1ab/nsp31197S1197SagCagT11B.1.5460.003704
ORF1ab/nsp31197S1197SagCagT11B.1.5510.00129
ORF1ab/nsp31197S1197IaGcaTc11B.1.5610.000397
ORF1ab/nsp31197S1197SagCagT11B.1.5660.019231
ORF1ab/nsp31197S1197RAgcCgc11B.1.5820.000491
ORF1ab/nsp31197S1197SagCagT11B.1.5820.000491
ORF1ab/nsp31197S1197SagCagT11B.1.5850.027778
ORF1ab/nsp31197S1197SagCagT11B.1.5900.004545
ORF1ab/nsp31197S1197IaGcaTc11B.1.5950.000261
ORF1ab/nsp31197S1197GAgcGgc11B.1.5960.000087
ORF1ab/nsp31197S1197SagCagT11B.1.6060.006024
ORF1ab/nsp31197S1197RagCagA11B.1.617.10.000129
ORF1ab/nsp31197S1197SagCagT11B.1.617.10.000129
ORF1ab/nsp31197S1197NaGcaAc11B.1.617.10.000129
ORF1ab/nsp31197S1197CAgcTgc11B.1.617.20.000004
ORF1ab/nsp31197S1197del1Agc-gc11B.1.617.20.000004
ORF1ab/nsp31197S1197SagCagT11B.1.6280.000352
ORF1ab/nsp31197S1197delAGC---11B.1.6300.005236
ORF1ab/nsp31197S1197SagCagT11B.1.6340.003425
ORF1ab/nsp31197S1197GAgcGgc11B.1.6370.000073
ORF1ab/nsp31197S1197RAgcCgc11B.1.6370.000073
ORF1ab/nsp31197S1197NaGcaAc11B.1.6370.000073
ORF1ab/nsp31197S1197SagCagT11B.290.003509
ORF1ab/nsp31197S1197RagCagA11B.6.30.026316
ORF1ab/nsp31197S1197SagCagT11B.6.50.076923
ORF1ab/nsp31197S1197IaGcaTc11C.120.007194
ORF1ab/nsp31197S1197NaGcaAc11C.160.00106
ORF1ab/nsp31197S1197SagCagT11C.230.005814
ORF1ab/nsp31197S1197TaGcaCc11C.350.000774
ORF1ab/nsp31197S1197GAgcGgc11C.360.000911
ORF1ab/nsp31197S1197delAGC---11C.370.000116
ORF1ab/nsp31197S1197IaGcaTc11D.20.000075
ORF1ab/nsp31197S1197delAGC---11P.10.000016
ORF1ab/nsp31197S1197NaGcaAc11P.1.120.000484
ORF1ab/nsp31197S1197SagCagT11P.1.150.000232
ORF1ab/nsp31197S1197IaGcaTc11P.1.170.000162
ORF1ab/nsp31197S1197IaGcaTc11Q.10.000126
ORF1ab/nsp31197S1197SagCagT11Q.20.000613
ORF1ab/nsp31197S1197RAgcCgc11Q.30.000145
ORF1ab/nsp31197S1197IaGcaTc11Q.80.000165