CoV-GLUE | Mutations | Mutation

CoV-GLUE Mutation: ORF = ORF1ab/nsp3 : CodonNum = 1195

Details of the codons used for the mutation across all lineages (CodonProp is the proportion each codon is used for this AA mutation):

ORFCodonNumMutORF1abMutMutTypeRefCodonMutCodonAACountCodonCountCodonPropGenome Position
ORF1ab/nsp31195L1195LL2013LsynctTctG2641380.5227276302-6304
ORF1ab/nsp31195L1195LL2013LsynctTctC2641080.4090916302-6304
ORF1ab/nsp31195L1195LL2013LsynctTctA264170.06439396302-6304
ORF1ab/nsp31195L1195LL2013LsynCtTTtG26410.003787886302-6304
ORF1ab/nsp31195L1195IL2013InonsynCttAtt84810.9642866302-6304
ORF1ab/nsp31195L1195IL2013InonsynCtTAtC8430.03571436302-6304
ORF1ab/nsp31195L1195FL2013FnonsynCttTtt383816302-6304
ORF1ab/nsp31195L1195delL2013deldelCTT---161616302-6304
ORF1ab/nsp31195L1195PL2013PnonsyncTtcCt141416302-6304
ORF1ab/nsp31195L1195RL2013RnonsyncTtcGt2216302-6304
ORF1ab/nsp31195L1195del1L2013del1delcTtc-t210.56302-6304
ORF1ab/nsp31195L1195del1L2013del1delCtT-tC210.56302-6304
ORF1ab/nsp31195L1195del2L2013del2delcTTc--1116302-6304

Details of the mutation no within lineages (LineageCodonProp is the proportion the codon is observed at, at this particular site, on each lineage):

ORFCodonNumMutRefCodonMutCodonCodonCountAACountLineageLineageCodonProp
ORF1ab/nsp31195L1195LctTctG138264All0.000026
ORF1ab/nsp31195L1195LctTctC108264All0.000021
ORF1ab/nsp31195L1195LctTctA17264All0.000003
ORF1ab/nsp31195L1195LCtTTtG1264All0
ORF1ab/nsp31195L1195ICttAtt8184All0.000015
ORF1ab/nsp31195L1195ICtTAtC384All0.000001
ORF1ab/nsp31195L1195LctTctG8484B.1.1.4400.988235
ORF1ab/nsp31195L1195FCttTtt3838All0.000007
ORF1ab/nsp31195L1195LctTctG2837B.1.1.70.000025
ORF1ab/nsp31195L1195LctTctC937B.1.1.70.000008
ORF1ab/nsp31195L1195ICttAtt3535B.1.1.70.000031
ORF1ab/nsp31195L1195ICttAtt2222AY.40.000034
ORF1ab/nsp31195L1195LctTctC2222P.10.000347
ORF1ab/nsp31195L1195LctTctC1818AY.230.001255
ORF1ab/nsp31195L1195LctTctG1518B.10.000137
ORF1ab/nsp31195L1195LctTctA118B.10.000009
ORF1ab/nsp31195L1195LctTctC118B.10.000009
ORF1ab/nsp31195L1195LCtTTtG118B.10.000009
ORF1ab/nsp31195L1195delCTT---1616All0.000003
ORF1ab/nsp31195L1195PcTtcCt1414All0.000003
ORF1ab/nsp31195L1195LctTctC1111B.1.177.600.002403
ORF1ab/nsp31195L1195LctTctC88AY.430.000035
ORF1ab/nsp31195L1195LctTctC78B.1.617.20.000026
ORF1ab/nsp31195L1195LctTctA18B.1.617.20.000004
ORF1ab/nsp31195L1195FCttTtt77B.1.1.70.000006
ORF1ab/nsp31195L1195FCttTtt66AY.40.000009
ORF1ab/nsp31195L1195LctTctC66AY.440.000037
ORF1ab/nsp31195L1195LctTctC35AY.40.000005
ORF1ab/nsp31195L1195LctTctG15AY.40.000002
ORF1ab/nsp31195L1195LctTctA15AY.40.000002
ORF1ab/nsp31195L1195LctTctG45B.1.10.000073
ORF1ab/nsp31195L1195LctTctC15B.1.10.000018
ORF1ab/nsp31195L1195LctTctG35B.1.20.000026
ORF1ab/nsp31195L1195LctTctC25B.1.20.000018
ORF1ab/nsp31195L1195LctTctA55B.1.258.110.001982
ORF1ab/nsp31195L1195LctTctC44AY.390.000099
ORF1ab/nsp31195L1195ICttAtt44AY.430.000018
ORF1ab/nsp31195L1195ICttAtt44B.10.000037
ORF1ab/nsp31195L1195LctTctC33AY.200.000117
ORF1ab/nsp31195L1195LctTctA33AY.420.000121
ORF1ab/nsp31195L1195LctTctC33AY.930.000819
ORF1ab/nsp31195L1195FCttTtt33B.10.000027
ORF1ab/nsp31195L1195delCTT---33B.1.1.70.000003
ORF1ab/nsp31195L1195FCttTtt33B.1.617.20.000011
ORF1ab/nsp31195L1195RcTtcGt22All0
ORF1ab/nsp31195L1195del1CtT-tC12All0
ORF1ab/nsp31195L1195del1cTtc-t12All0
ORF1ab/nsp31195L1195LctTctC12AY.250.000006
ORF1ab/nsp31195L1195LctTctG12AY.250.000006
ORF1ab/nsp31195L1195ICttAtt22AY.390.000049
ORF1ab/nsp31195L1195PcTtcCt22AY.40.000003
ORF1ab/nsp31195L1195FCttTtt22AY.46.60.000144
ORF1ab/nsp31195L1195PcTtcCt22B.1.10.000036
ORF1ab/nsp31195L1195FCttTtt22B.1.5250.000226
ORF1ab/nsp31195L1195LctTctA22P.30.00319
ORF1ab/nsp31195L1195ICttAtt11A0.000387
ORF1ab/nsp31195L1195del2cTTc--11All0
ORF1ab/nsp31195L1195FCttTtt11AY.1000.000046
ORF1ab/nsp31195L1195delCTT---11AY.1010.00049
ORF1ab/nsp31195L1195LctTctC11AY.1020.000027
ORF1ab/nsp31195L1195LctTctC11AY.1030.000006
ORF1ab/nsp31195L1195ICttAtt11AY.1030.000006
ORF1ab/nsp31195L1195FCttTtt11AY.1030.000006
ORF1ab/nsp31195L1195FCttTtt11AY.1180.000063
ORF1ab/nsp31195L1195FCttTtt11AY.1190.000035
ORF1ab/nsp31195L1195PcTtcCt11AY.130.000161
ORF1ab/nsp31195L1195FCttTtt11AY.250.000006
ORF1ab/nsp31195L1195delCTT---11AY.250.000006
ORF1ab/nsp31195L1195FCttTtt11AY.30.00001
ORF1ab/nsp31195L1195FCttTtt11AY.330.000067
ORF1ab/nsp31195L1195PcTtcCt11AY.330.000067
ORF1ab/nsp31195L1195LctTctC11AY.360.000148
ORF1ab/nsp31195L1195FCttTtt11AY.390.000025
ORF1ab/nsp31195L1195PcTtcCt11AY.4.50.000107
ORF1ab/nsp31195L1195ICtTAtC11AY.440.000006
ORF1ab/nsp31195L1195LctTctC11AY.460.000104
ORF1ab/nsp31195L1195LctTctA11AY.46.20.000635
ORF1ab/nsp31195L1195LctTctC11AY.46.60.000072
ORF1ab/nsp31195L1195ICttAtt11AY.520.000814
ORF1ab/nsp31195L1195FCttTtt11AY.60.000041
ORF1ab/nsp31195L1195delCTT---11AY.660.00107
ORF1ab/nsp31195L1195delCTT---11AY.850.000427
ORF1ab/nsp31195L1195PcTtcCt11AY.9.20.000037
ORF1ab/nsp31195L1195ICttAtt11AY.950.000761
ORF1ab/nsp31195L1195FCttTtt11AY.950.000761
ORF1ab/nsp31195L1195delCTT---11AY.990.001049
ORF1ab/nsp31195L1195LctTctC11B0.000128
ORF1ab/nsp31195L1195ICttAtt11B0.000128
ORF1ab/nsp31195L1195PcTtcCt11B0.000128
ORF1ab/nsp31195L1195PcTtcCt11B.10.000009
ORF1ab/nsp31195L1195delCTT---11B.10.000009
ORF1ab/nsp31195L1195LctTctC11B.1.1.3110.000358
ORF1ab/nsp31195L1195delCTT---11B.1.1.3150.008475
ORF1ab/nsp31195L1195delCTT---11B.1.1.3480.000796
ORF1ab/nsp31195L1195FCttTtt11B.1.1.5190.00004
ORF1ab/nsp31195L1195LctTctC11B.1.1.5210.005348
ORF1ab/nsp31195L1195PcTtcCt11B.1.1.70.000001
ORF1ab/nsp31195L1195ICttAtt11B.1.1180.006711
ORF1ab/nsp31195L1195FCttTtt11B.1.1770.000013
ORF1ab/nsp31195L1195delCTT---11B.1.1770.000013
ORF1ab/nsp31195L1195ICttAtt11B.1.1770.000013
ORF1ab/nsp31195L1195LctTctC11B.1.1770.000013
ORF1ab/nsp31195L1195LctTctG11B.1.177.210.000076
ORF1ab/nsp31195L1195delCTT---11B.1.177.620.001192
ORF1ab/nsp31195L1195del2cTTc--11B.1.20.000009
ORF1ab/nsp31195L1195FCttTtt11B.1.20.000009
ORF1ab/nsp31195L1195RcTtcGt11B.1.20.000009
ORF1ab/nsp31195L1195LctTctG11B.1.2060.000816
ORF1ab/nsp31195L1195ICttAtt11B.1.3010.005917
ORF1ab/nsp31195L1195RcTtcGt11B.1.3320.003497
ORF1ab/nsp31195L1195LctTctA11B.1.3510.00003
ORF1ab/nsp31195L1195PcTtcCt11B.1.351.50.0006
ORF1ab/nsp31195L1195ICttAtt11B.1.36.160.001425
ORF1ab/nsp31195L1195FCttTtt11B.1.3610.001289
ORF1ab/nsp31195L1195PcTtcCt11B.1.3990.001934
ORF1ab/nsp31195L1195ICttAtt11B.1.4270.00005
ORF1ab/nsp31195L1195LctTctA11B.1.4290.000024
ORF1ab/nsp31195L1195ICttAtt11B.1.4290.000024
ORF1ab/nsp31195L1195ICttAtt11B.1.5260.000024
ORF1ab/nsp31195L1195FCttTtt11B.1.5960.000087
ORF1ab/nsp31195L1195del1CtT-tC11B.1.617.20.000004
ORF1ab/nsp31195L1195ICttAtt11B.1.617.20.000004
ORF1ab/nsp31195L1195LctTctA11B.1.6210.000089
ORF1ab/nsp31195L1195PcTtcCt11B.1.6210.000089
ORF1ab/nsp31195L1195ICttAtt11B.1.6230.000536
ORF1ab/nsp31195L1195delCTT---11B.1.6300.005236
ORF1ab/nsp31195L1195ICtTAtC11C.350.000774
ORF1ab/nsp31195L1195delCTT---11C.370.000116
ORF1ab/nsp31195L1195del1cTtc-t11D.20.000075
ORF1ab/nsp31195L1195ICtTAtC11P.10.000016
ORF1ab/nsp31195L1195delCTT---11P.10.000016