CoV-GLUE | Mutations | Mutation

CoV-GLUE Mutation: ORF = ORF1ab/nsp3 : CodonNum = 1192

Details of the codons used for the mutation across all lineages (CodonProp is the proportion each codon is used for this AA mutation):

ORFCodonNumMutORF1abMutMutTypeRefCodonMutCodonAACountCodonCountCodonPropGenome Position
ORF1ab/nsp31192I1192TI2010TnonsynaTaaCa1864186416293-6295
ORF1ab/nsp31192I1192VI2010VnonsynAtaGta7347330.9986386293-6295
ORF1ab/nsp31192I1192VI2010VnonsynAtAGtG73410.00136246293-6295
ORF1ab/nsp31192I1192MI2010MnonsynatAatG62662616293-6295
ORF1ab/nsp31192I1192delI2010deldelATA---191916293-6295
ORF1ab/nsp31192I1192LI2010LnonsynAtaTta12100.8333336293-6295
ORF1ab/nsp31192I1192LI2010LnonsynAtaCta1220.1666676293-6295
ORF1ab/nsp31192I1192II2010IsynatAatT540.86293-6295
ORF1ab/nsp31192I1192II2010IsynatAatC510.26293-6295
ORF1ab/nsp31192I1192KI2010KnonsynaTaaAa1116293-6295
ORF1ab/nsp31192I1192del1I2010del1delatAat-1116293-6295

Details of the mutation no within lineages (LineageCodonProp is the proportion the codon is observed at, at this particular site, on each lineage):

ORFCodonNumMutRefCodonMutCodonCodonCountAACountLineageLineageCodonProp
ORF1ab/nsp31192I1192TaTaaCa18641864All0.000357
ORF1ab/nsp31192I1192TaTaaCa10011001AY.1030.006215
ORF1ab/nsp31192I1192VAtaGta733734All0.00014
ORF1ab/nsp31192I1192VAtAGtG1734All0
ORF1ab/nsp31192I1192MatAatG626626All0.00012
ORF1ab/nsp31192I1192VAtaGta238238AY.40.00037
ORF1ab/nsp31192I1192MatAatG207207B.1.1770.002726
ORF1ab/nsp31192I1192TaTaaCa169169AY.40.000263
ORF1ab/nsp31192I1192TaTaaCa154154B.1.617.20.00058
ORF1ab/nsp31192I1192TaTaaCa138138B.1.1821
ORF1ab/nsp31192I1192MatAatG102102B.1.1.70.000091
ORF1ab/nsp31192I1192TaTaaCa9090B.1.1.70.000081
ORF1ab/nsp31192I1192VAtaGta7070B.1.1.70.000063
ORF1ab/nsp31192I1192VAtaGta6666B.10.000605
ORF1ab/nsp31192I1192VAtaGta4747B.1.617.20.000177
ORF1ab/nsp31192I1192MatAatG4040B.1.619.10.025657
ORF1ab/nsp31192I1192MatAatG3434B.1.617.20.000128
ORF1ab/nsp31192I1192VAtaGta3333AY.430.000146
ORF1ab/nsp31192I1192VAtaGta3030B.1.1770.000395
ORF1ab/nsp31192I1192TaTaaCa2626AY.430.000115
ORF1ab/nsp31192I1192MatAatG2424AY.9.20.000882
ORF1ab/nsp31192I1192MatAatG2222AY.1190.000777
ORF1ab/nsp31192I1192VAtaGta2222AY.4.20.000477
ORF1ab/nsp31192I1192TaTaaCa2222B.1.1.2310.068111
ORF1ab/nsp31192I1192TaTaaCa2020AY.420.000805
ORF1ab/nsp31192I1192delATA---1919All0.000004
ORF1ab/nsp31192I1192MatAatG1919B.1.20.000167
ORF1ab/nsp31192I1192MatAatG1717AY.1030.000106
ORF1ab/nsp31192I1192VAtaGta1717AY.250.000102
ORF1ab/nsp31192I1192TaTaaCa1717R.10.00153
ORF1ab/nsp31192I1192TaTaaCa1616AY.540.001526
ORF1ab/nsp31192I1192TaTaaCa1515AY.250.00009
ORF1ab/nsp31192I1192TaTaaCa1515B.1.258.110.005945
ORF1ab/nsp31192I1192MatAatG1414AY.40.000022
ORF1ab/nsp31192I1192MatAatG1414B.1.177.600.003058
ORF1ab/nsp31192I1192TaTaaCa1313B.10.000119
ORF1ab/nsp31192I1192LAtaTta1012All0.000002
ORF1ab/nsp31192I1192LAtaCta212All0
ORF1ab/nsp31192I1192VAtaGta1212AY.440.000073
ORF1ab/nsp31192I1192VAtaGta1212AY.60.000494
ORF1ab/nsp31192I1192VAtaGta1111AY.75.10.001983
ORF1ab/nsp31192I1192TaTaaCa1111B.1.2430.000765
ORF1ab/nsp31192I1192VAtaGta1010B.1.1.2910.007424
ORF1ab/nsp31192I1192MatAatG1010B.1.3510.000297
ORF1ab/nsp31192I1192VAtaGta99AY.30.00009
ORF1ab/nsp31192I1192VAtaGta99B.1.2430.000626
ORF1ab/nsp31192I1192VAtaGta88AY.1190.000282
ORF1ab/nsp31192I1192VAtaGta88AY.260.000226
ORF1ab/nsp31192I1192TaTaaCa88AY.440.000049
ORF1ab/nsp31192I1192TaTaaCa88B.1.1.2940.010127
ORF1ab/nsp31192I1192MatAatG88B.1.1.4320.010127
ORF1ab/nsp31192I1192TaTaaCa88B.1.6370.000585
ORF1ab/nsp31192I1192TaTaaCa77AY.1020.000186
ORF1ab/nsp31192I1192TaTaaCa77AY.1180.000439
ORF1ab/nsp31192I1192VAtaGta77AY.290.00011
ORF1ab/nsp31192I1192MatAatG77AY.30.00007
ORF1ab/nsp31192I1192VAtaGta77AY.390.000173
ORF1ab/nsp31192I1192TaTaaCa77AY.4.20.000152
ORF1ab/nsp31192I1192MatAatG77AY.430.000031
ORF1ab/nsp31192I1192VAtaGta77AY.610.000733
ORF1ab/nsp31192I1192TaTaaCa77P.1.140.000335
ORF1ab/nsp31192I1192MatAatG66AY.250.000036
ORF1ab/nsp31192I1192TaTaaCa66AY.260.00017
ORF1ab/nsp31192I1192MatAatG66AY.440.000037
ORF1ab/nsp31192I1192VAtaGta66AY.46.50.00119
ORF1ab/nsp31192I1192MatAatG66B.10.000055
ORF1ab/nsp31192I1192MatAatG66B.1.1.700.002046
ORF1ab/nsp31192I1192IatAatT45All0.000001
ORF1ab/nsp31192I1192IatAatC15All0
ORF1ab/nsp31192I1192TaTaaCa55AY.1200.000186
ORF1ab/nsp31192I1192TaTaaCa55B.1.10.000091
ORF1ab/nsp31192I1192VAtaGta55B.1.20.000044
ORF1ab/nsp31192I1192MatAatG55B.1.5260.000118
ORF1ab/nsp31192I1192MatAatG55B.280.016393
ORF1ab/nsp31192I1192VAtaGta44AY.1030.000025
ORF1ab/nsp31192I1192TaTaaCa44AY.30.00004
ORF1ab/nsp31192I1192MatAatG44AY.390.000099
ORF1ab/nsp31192I1192MatAatG44AY.880.003537
ORF1ab/nsp31192I1192VAtaGta44B.1.1.4160.00362
ORF1ab/nsp31192I1192VAtaGta44B.1.1.5190.000159
ORF1ab/nsp31192I1192TaTaaCa44B.1.1.5190.000159
ORF1ab/nsp31192I1192LAtaTta44B.1.1.70.000004
ORF1ab/nsp31192I1192TaTaaCa44B.1.1600.000125
ORF1ab/nsp31192I1192TaTaaCa44B.1.20.000035
ORF1ab/nsp31192I1192VAtaGta44B.1.2340.000528
ORF1ab/nsp31192I1192TaTaaCa44B.1.3110.001098
ORF1ab/nsp31192I1192VAtaGta44B.1.3960.002823
ORF1ab/nsp31192I1192TaTaaCa44B.1.4290.000094
ORF1ab/nsp31192I1192MatAatG44P.1.150.000929
ORF1ab/nsp31192I1192TaTaaCa33AY.1000.000138
ORF1ab/nsp31192I1192MatAatG33AY.1020.00008
ORF1ab/nsp31192I1192VAtaGta33AY.1200.000112
ORF1ab/nsp31192I1192TaTaaCa33AY.290.000047
ORF1ab/nsp31192I1192VAtaGta33AY.3.10.000256
ORF1ab/nsp31192I1192TaTaaCa33AY.470.000093
ORF1ab/nsp31192I1192MatAatG33AY.470.000093
ORF1ab/nsp31192I1192VAtaGta33AY.50.000062
ORF1ab/nsp31192I1192TaTaaCa33AY.610.000314
ORF1ab/nsp31192I1192MatAatG33AY.7.10.000338
ORF1ab/nsp31192I1192delATA---33B.1.1.70.000003
ORF1ab/nsp31192I1192TaTaaCa33B.1.1770.00004
ORF1ab/nsp31192I1192VAtaGta33B.1.5260.000071
ORF1ab/nsp31192I1192VAtaGta22A.23.10.001408
ORF1ab/nsp31192I1192VAtaGta22AY.350.000466
ORF1ab/nsp31192I1192TaTaaCa22AY.390.000049
ORF1ab/nsp31192I1192VAtaGta22AY.420.00008
ORF1ab/nsp31192I1192TaTaaCa22AY.460.000208
ORF1ab/nsp31192I1192VAtaGta22AY.460.000208
ORF1ab/nsp31192I1192MatAatG22AY.46.20.001271
ORF1ab/nsp31192I1192MatAatG22AY.50.000041
ORF1ab/nsp31192I1192MatAatG22AY.60.000082
ORF1ab/nsp31192I1192MatAatG22AY.700.000417
ORF1ab/nsp31192I1192VAtaGta22AY.740.000231
ORF1ab/nsp31192I1192TaTaaCa22AY.740.000231
ORF1ab/nsp31192I1192VAtaGta22AY.9.10.000167
ORF1ab/nsp31192I1192MatAatG22AY.98.10.000097
ORF1ab/nsp31192I1192VAtaGta22AY.98.10.000097
ORF1ab/nsp31192I1192TaTaaCa22AY.99.20.000184
ORF1ab/nsp31192I1192delATA---22B.10.000018
ORF1ab/nsp31192I1192VAtaGta22B.1.10.000036
ORF1ab/nsp31192I1192VAtaGta22B.1.1.2220.000408
ORF1ab/nsp31192I1192MatAatG22B.1.1.280.000622
ORF1ab/nsp31192I1192delATA---22B.1.1.3150.016949
ORF1ab/nsp31192I1192TaTaaCa22B.1.1.3260.003521
ORF1ab/nsp31192I1192VAtaGta22B.1.1600.000062
ORF1ab/nsp31192I1192MatAatG22B.1.177.730.001133
ORF1ab/nsp31192I1192MatAatG22B.1.3690.00057
ORF1ab/nsp31192I1192VAtaGta22B.1.4290.000047
ORF1ab/nsp31192I1192MatAatG22B.1.4290.000047
ORF1ab/nsp31192I1192VAtaGta22B.1.5270.007407
ORF1ab/nsp31192I1192VAtaGta22B.1.5870.003795
ORF1ab/nsp31192I1192VAtaGta22B.1.6230.001073
ORF1ab/nsp31192I1192MatAatG22B.1.6370.000146
ORF1ab/nsp31192I1192VAtaGta22P.10.000032
ORF1ab/nsp31192I1192TaTaaCa22P.10.000032
ORF1ab/nsp31192I1192VAtaGta22P.1.150.000465
ORF1ab/nsp31192I1192TaTaaCa11A.2.50.000499
ORF1ab/nsp31192I1192TaTaaCa11A.2.5.20.001572
ORF1ab/nsp31192I1192TaTaaCa11A.50.001923
ORF1ab/nsp31192I1192VAtaGta11AA.40.009091
ORF1ab/nsp31192I1192TaTaaCa11AD.20.000219
ORF1ab/nsp31192I1192VAtaGta11AE.80.000489
ORF1ab/nsp31192I1192del1atAat-11All0
ORF1ab/nsp31192I1192KaTaaAa11All0
ORF1ab/nsp31192I1192TaTaaCa11AM.40.003571
ORF1ab/nsp31192I1192TaTaaCa11AY.100.00053
ORF1ab/nsp31192I1192MatAatG11AY.1000.000046
ORF1ab/nsp31192I1192delATA---11AY.1010.00049
ORF1ab/nsp31192I1192VAtaGta11AY.1020.000027
ORF1ab/nsp31192I1192VAtaGta11AY.1170.000085
ORF1ab/nsp31192I1192TaTaaCa11AY.1170.000085
ORF1ab/nsp31192I1192VAtaGta11AY.1210.000135
ORF1ab/nsp31192I1192VAtaGta11AY.130.000161
ORF1ab/nsp31192I1192TaTaaCa11AY.160.00038
ORF1ab/nsp31192I1192MatAatG11AY.160.00038
ORF1ab/nsp31192I1192MatAatG11AY.230.00007
ORF1ab/nsp31192I1192VAtaGta11AY.230.00007
ORF1ab/nsp31192I1192VAtaGta11AY.23.10.000417
ORF1ab/nsp31192I1192delATA---11AY.250.000006
ORF1ab/nsp31192I1192MatAatG11AY.270.000065
ORF1ab/nsp31192I1192TaTaaCa11AY.29.10.000221
ORF1ab/nsp31192I1192TaTaaCa11AY.330.000067
ORF1ab/nsp31192I1192VAtaGta11AY.330.000067
ORF1ab/nsp31192I1192TaTaaCa11AY.340.000097
ORF1ab/nsp31192I1192VAtaGta11AY.34.10.00051
ORF1ab/nsp31192I1192MatAatG11AY.39.10.00004
ORF1ab/nsp31192I1192IatAatT11AY.40.000002
ORF1ab/nsp31192I1192LAtaTta11AY.40.000002
ORF1ab/nsp31192I1192delATA---11AY.430.000004
ORF1ab/nsp31192I1192TaTaaCa11AY.450.000122
ORF1ab/nsp31192I1192TaTaaCa11AY.46.20.000635
ORF1ab/nsp31192I1192MatAatG11AY.46.40.000165
ORF1ab/nsp31192I1192TaTaaCa11AY.46.40.000165
ORF1ab/nsp31192I1192VAtaGta11AY.5.30.000337
ORF1ab/nsp31192I1192VAtaGta11AY.540.000095
ORF1ab/nsp31192I1192TaTaaCa11AY.590.00053
ORF1ab/nsp31192I1192delATA---11AY.660.00107
ORF1ab/nsp31192I1192LAtaTta11AY.670.000464
ORF1ab/nsp31192I1192VAtaGta11AY.70.000196
ORF1ab/nsp31192I1192TaTaaCa11AY.75.10.00018
ORF1ab/nsp31192I1192delATA---11AY.850.000427
ORF1ab/nsp31192I1192TaTaaCa11AY.90.000068
ORF1ab/nsp31192I1192VAtAGtG11AY.9.20.000037
ORF1ab/nsp31192I1192TaTaaCa11AY.9.20.000037
ORF1ab/nsp31192I1192TaTaaCa11AY.920.000287
ORF1ab/nsp31192I1192LAtaTta11AY.930.000273
ORF1ab/nsp31192I1192MatAatG11AY.950.000761
ORF1ab/nsp31192I1192VAtaGta11AY.980.000079
ORF1ab/nsp31192I1192MatAatG11B0.000128
ORF1ab/nsp31192I1192IatAatT11B.10.000009
ORF1ab/nsp31192I1192LAtaTta11B.10.000009
ORF1ab/nsp31192I1192delATA---11B.1.10.000018
ORF1ab/nsp31192I1192MatAatG11B.1.1.2160.00089
ORF1ab/nsp31192I1192VAtaGta11B.1.1.3060.000438
ORF1ab/nsp31192I1192VAtaGta11B.1.1.3170.000412
ORF1ab/nsp31192I1192delATA---11B.1.1.3480.000796
ORF1ab/nsp31192I1192VAtaGta11B.1.1.3620.005618
ORF1ab/nsp31192I1192IatAatC11B.1.1.70.000001
ORF1ab/nsp31192I1192TaTaaCa11B.1.1.80.003584
ORF1ab/nsp31192I1192MatAatG11B.1.1600.000031
ORF1ab/nsp31192I1192TaTaaCa11B.1.160.120.00641
ORF1ab/nsp31192I1192delATA---11B.1.1770.000013
ORF1ab/nsp31192I1192TaTaaCa11B.1.177.120.000152
ORF1ab/nsp31192I1192LAtaCta11B.1.177.40.000211
ORF1ab/nsp31192I1192LAtaTta11B.1.177.620.001192
ORF1ab/nsp31192I1192TaTaaCa11B.1.177.620.001192
ORF1ab/nsp31192I1192delATA---11B.1.177.620.001192
ORF1ab/nsp31192I1192MatAatG11B.1.177.690.001484
ORF1ab/nsp31192I1192MatAatG11B.1.177.790.002342
ORF1ab/nsp31192I1192MatAatG11B.1.177.810.000189
ORF1ab/nsp31192I1192MatAatG11B.1.177.830.001481
ORF1ab/nsp31192I1192TaTaaCa11B.1.1990.004132
ORF1ab/nsp31192I1192del1atAat-11B.1.20.000009
ORF1ab/nsp31192I1192VAtaGta11B.1.2210.000071
ORF1ab/nsp31192I1192TaTaaCa11B.1.2370.004975
ORF1ab/nsp31192I1192IatAatT11B.1.2410.000812
ORF1ab/nsp31192I1192LAtaCta11B.1.2430.00007
ORF1ab/nsp31192I1192TaTaaCa11B.1.2580.000067
ORF1ab/nsp31192I1192MatAatG11B.1.258.110.000396
ORF1ab/nsp31192I1192VAtaGta11B.1.3110.000275
ORF1ab/nsp31192I1192MatAatG11B.1.3400.004292
ORF1ab/nsp31192I1192VAtaGta11B.1.3460.001311
ORF1ab/nsp31192I1192VAtaGta11B.1.3510.00003
ORF1ab/nsp31192I1192TaTaaCa11B.1.3510.00003
ORF1ab/nsp31192I1192TaTaaCa11B.1.351.20.000303
ORF1ab/nsp31192I1192TaTaaCa11B.1.360.000146
ORF1ab/nsp31192I1192MatAatG11B.1.36.290.000517
ORF1ab/nsp31192I1192VAtaGta11B.1.3690.000285
ORF1ab/nsp31192I1192MatAatG11B.1.3770.004566
ORF1ab/nsp31192I1192MatAatG11B.1.3960.000706
ORF1ab/nsp31192I1192VAtaGta11B.1.4220.000812
ORF1ab/nsp31192I1192MatAatG11B.1.4270.00005
ORF1ab/nsp31192I1192TaTaaCa11B.1.4270.00005
ORF1ab/nsp31192I1192VAtaGta11B.1.4280.00102
ORF1ab/nsp31192I1192VAtaGta11B.1.5170.000427
ORF1ab/nsp31192I1192MatAatG11B.1.5760.000907
ORF1ab/nsp31192I1192VAtaGta11B.1.5760.000907
ORF1ab/nsp31192I1192IatAatT11B.1.5770.000687
ORF1ab/nsp31192I1192VAtaGta11B.1.5950.000261
ORF1ab/nsp31192I1192LAtaTta11B.1.617.20.000004
ORF1ab/nsp31192I1192MatAatG11B.1.6210.000089
ORF1ab/nsp31192I1192TaTaaCa11B.1.6210.000089
ORF1ab/nsp31192I1192VAtaGta11B.1.6210.000089
ORF1ab/nsp31192I1192delATA---11B.1.6300.005236
ORF1ab/nsp31192I1192VAtaGta11B.1.6370.000073
ORF1ab/nsp31192I1192MatAatG11C.1.20.004255
ORF1ab/nsp31192I1192TaTaaCa11C.2.10.006667
ORF1ab/nsp31192I1192KaTaaAa11C.350.000774
ORF1ab/nsp31192I1192TaTaaCa11C.360.000911
ORF1ab/nsp31192I1192delATA---11C.370.000116
ORF1ab/nsp31192I1192TaTaaCa11D.20.000075
ORF1ab/nsp31192I1192TaTaaCa11N.50.001767
ORF1ab/nsp31192I1192MatAatG11P.10.000016
ORF1ab/nsp31192I1192delATA---11P.10.000016
ORF1ab/nsp31192I1192VAtaGta11P.1.120.000484
ORF1ab/nsp31192I1192VAtaGta11P.1.140.000048
ORF1ab/nsp31192I1192VAtaGta11P.1.20.001156
ORF1ab/nsp31192I1192TaTaaCa11P.1.40.000977
ORF1ab/nsp31192I1192TaTaaCa11P.1.80.004785
ORF1ab/nsp31192I1192VAtaGta11P.70.004367
ORF1ab/nsp31192I1192TaTaaCa11Q.10.000126
ORF1ab/nsp31192I1192VAtaGta11Q.10.000126
ORF1ab/nsp31192I1192MatAatG11Q.30.000145
ORF1ab/nsp31192I1192VAtaGta11R.10.00009
ORF1ab/nsp31192I1192MatAatG11R.10.00009