CoV-GLUE | Mutations | Mutation
Details of the codons used for the mutation across all lineages (CodonProp is the proportion each codon is used for this AA mutation):
ORF | CodonNum | Mut | ORF1abMut | MutType | RefCodon | MutCodon | AACount | CodonCount | CodonProp | Genome Position |
ORF1ab/nsp3 | 1192 | I1192T | I2010T | nonsyn | aTa | aCa | 1864 | 1864 | 1 | 6293-6295 |
ORF1ab/nsp3 | 1192 | I1192V | I2010V | nonsyn | Ata | Gta | 734 | 733 | 0.998638 | 6293-6295 |
ORF1ab/nsp3 | 1192 | I1192V | I2010V | nonsyn | AtA | GtG | 734 | 1 | 0.0013624 | 6293-6295 |
ORF1ab/nsp3 | 1192 | I1192M | I2010M | nonsyn | atA | atG | 626 | 626 | 1 | 6293-6295 |
ORF1ab/nsp3 | 1192 | I1192del | I2010del | del | ATA | --- | 19 | 19 | 1 | 6293-6295 |
ORF1ab/nsp3 | 1192 | I1192L | I2010L | nonsyn | Ata | Tta | 12 | 10 | 0.833333 | 6293-6295 |
ORF1ab/nsp3 | 1192 | I1192L | I2010L | nonsyn | Ata | Cta | 12 | 2 | 0.166667 | 6293-6295 |
ORF1ab/nsp3 | 1192 | I1192I | I2010I | syn | atA | atT | 5 | 4 | 0.8 | 6293-6295 |
ORF1ab/nsp3 | 1192 | I1192I | I2010I | syn | atA | atC | 5 | 1 | 0.2 | 6293-6295 |
ORF1ab/nsp3 | 1192 | I1192K | I2010K | nonsyn | aTa | aAa | 1 | 1 | 1 | 6293-6295 |
ORF1ab/nsp3 | 1192 | I1192del1 | I2010del1 | del | atA | at- | 1 | 1 | 1 | 6293-6295 |
Details of the mutation no within lineages (LineageCodonProp is the proportion the codon is observed at, at this particular site, on each lineage):
ORF | CodonNum | Mut | RefCodon | MutCodon | CodonCount | AACount | Lineage | LineageCodonProp |
ORF1ab/nsp3 | 1192 | I1192T | aTa | aCa | 1864 | 1864 | All | 0.000357 |
ORF1ab/nsp3 | 1192 | I1192T | aTa | aCa | 1001 | 1001 | AY.103 | 0.006215 |
ORF1ab/nsp3 | 1192 | I1192V | Ata | Gta | 733 | 734 | All | 0.00014 |
ORF1ab/nsp3 | 1192 | I1192V | AtA | GtG | 1 | 734 | All | 0 |
ORF1ab/nsp3 | 1192 | I1192M | atA | atG | 626 | 626 | All | 0.00012 |
ORF1ab/nsp3 | 1192 | I1192V | Ata | Gta | 238 | 238 | AY.4 | 0.00037 |
ORF1ab/nsp3 | 1192 | I1192M | atA | atG | 207 | 207 | B.1.177 | 0.002726 |
ORF1ab/nsp3 | 1192 | I1192T | aTa | aCa | 169 | 169 | AY.4 | 0.000263 |
ORF1ab/nsp3 | 1192 | I1192T | aTa | aCa | 154 | 154 | B.1.617.2 | 0.00058 |
ORF1ab/nsp3 | 1192 | I1192T | aTa | aCa | 138 | 138 | B.1.182 | 1 |
ORF1ab/nsp3 | 1192 | I1192M | atA | atG | 102 | 102 | B.1.1.7 | 0.000091 |
ORF1ab/nsp3 | 1192 | I1192T | aTa | aCa | 90 | 90 | B.1.1.7 | 0.000081 |
ORF1ab/nsp3 | 1192 | I1192V | Ata | Gta | 70 | 70 | B.1.1.7 | 0.000063 |
ORF1ab/nsp3 | 1192 | I1192V | Ata | Gta | 66 | 66 | B.1 | 0.000605 |
ORF1ab/nsp3 | 1192 | I1192V | Ata | Gta | 47 | 47 | B.1.617.2 | 0.000177 |
ORF1ab/nsp3 | 1192 | I1192M | atA | atG | 40 | 40 | B.1.619.1 | 0.025657 |
ORF1ab/nsp3 | 1192 | I1192M | atA | atG | 34 | 34 | B.1.617.2 | 0.000128 |
ORF1ab/nsp3 | 1192 | I1192V | Ata | Gta | 33 | 33 | AY.43 | 0.000146 |
ORF1ab/nsp3 | 1192 | I1192V | Ata | Gta | 30 | 30 | B.1.177 | 0.000395 |
ORF1ab/nsp3 | 1192 | I1192T | aTa | aCa | 26 | 26 | AY.43 | 0.000115 |
ORF1ab/nsp3 | 1192 | I1192M | atA | atG | 24 | 24 | AY.9.2 | 0.000882 |
ORF1ab/nsp3 | 1192 | I1192M | atA | atG | 22 | 22 | AY.119 | 0.000777 |
ORF1ab/nsp3 | 1192 | I1192V | Ata | Gta | 22 | 22 | AY.4.2 | 0.000477 |
ORF1ab/nsp3 | 1192 | I1192T | aTa | aCa | 22 | 22 | B.1.1.231 | 0.068111 |
ORF1ab/nsp3 | 1192 | I1192T | aTa | aCa | 20 | 20 | AY.42 | 0.000805 |
ORF1ab/nsp3 | 1192 | I1192del | ATA | --- | 19 | 19 | All | 0.000004 |
ORF1ab/nsp3 | 1192 | I1192M | atA | atG | 19 | 19 | B.1.2 | 0.000167 |
ORF1ab/nsp3 | 1192 | I1192M | atA | atG | 17 | 17 | AY.103 | 0.000106 |
ORF1ab/nsp3 | 1192 | I1192V | Ata | Gta | 17 | 17 | AY.25 | 0.000102 |
ORF1ab/nsp3 | 1192 | I1192T | aTa | aCa | 17 | 17 | R.1 | 0.00153 |
ORF1ab/nsp3 | 1192 | I1192T | aTa | aCa | 16 | 16 | AY.54 | 0.001526 |
ORF1ab/nsp3 | 1192 | I1192T | aTa | aCa | 15 | 15 | AY.25 | 0.00009 |
ORF1ab/nsp3 | 1192 | I1192T | aTa | aCa | 15 | 15 | B.1.258.11 | 0.005945 |
ORF1ab/nsp3 | 1192 | I1192M | atA | atG | 14 | 14 | AY.4 | 0.000022 |
ORF1ab/nsp3 | 1192 | I1192M | atA | atG | 14 | 14 | B.1.177.60 | 0.003058 |
ORF1ab/nsp3 | 1192 | I1192T | aTa | aCa | 13 | 13 | B.1 | 0.000119 |
ORF1ab/nsp3 | 1192 | I1192L | Ata | Tta | 10 | 12 | All | 0.000002 |
ORF1ab/nsp3 | 1192 | I1192L | Ata | Cta | 2 | 12 | All | 0 |
ORF1ab/nsp3 | 1192 | I1192V | Ata | Gta | 12 | 12 | AY.44 | 0.000073 |
ORF1ab/nsp3 | 1192 | I1192V | Ata | Gta | 12 | 12 | AY.6 | 0.000494 |
ORF1ab/nsp3 | 1192 | I1192V | Ata | Gta | 11 | 11 | AY.75.1 | 0.001983 |
ORF1ab/nsp3 | 1192 | I1192T | aTa | aCa | 11 | 11 | B.1.243 | 0.000765 |
ORF1ab/nsp3 | 1192 | I1192V | Ata | Gta | 10 | 10 | B.1.1.291 | 0.007424 |
ORF1ab/nsp3 | 1192 | I1192M | atA | atG | 10 | 10 | B.1.351 | 0.000297 |
ORF1ab/nsp3 | 1192 | I1192V | Ata | Gta | 9 | 9 | AY.3 | 0.00009 |
ORF1ab/nsp3 | 1192 | I1192V | Ata | Gta | 9 | 9 | B.1.243 | 0.000626 |
ORF1ab/nsp3 | 1192 | I1192V | Ata | Gta | 8 | 8 | AY.119 | 0.000282 |
ORF1ab/nsp3 | 1192 | I1192V | Ata | Gta | 8 | 8 | AY.26 | 0.000226 |
ORF1ab/nsp3 | 1192 | I1192T | aTa | aCa | 8 | 8 | AY.44 | 0.000049 |
ORF1ab/nsp3 | 1192 | I1192T | aTa | aCa | 8 | 8 | B.1.1.294 | 0.010127 |
ORF1ab/nsp3 | 1192 | I1192M | atA | atG | 8 | 8 | B.1.1.432 | 0.010127 |
ORF1ab/nsp3 | 1192 | I1192T | aTa | aCa | 8 | 8 | B.1.637 | 0.000585 |
ORF1ab/nsp3 | 1192 | I1192T | aTa | aCa | 7 | 7 | AY.102 | 0.000186 |
ORF1ab/nsp3 | 1192 | I1192T | aTa | aCa | 7 | 7 | AY.118 | 0.000439 |
ORF1ab/nsp3 | 1192 | I1192V | Ata | Gta | 7 | 7 | AY.29 | 0.00011 |
ORF1ab/nsp3 | 1192 | I1192M | atA | atG | 7 | 7 | AY.3 | 0.00007 |
ORF1ab/nsp3 | 1192 | I1192V | Ata | Gta | 7 | 7 | AY.39 | 0.000173 |
ORF1ab/nsp3 | 1192 | I1192T | aTa | aCa | 7 | 7 | AY.4.2 | 0.000152 |
ORF1ab/nsp3 | 1192 | I1192M | atA | atG | 7 | 7 | AY.43 | 0.000031 |
ORF1ab/nsp3 | 1192 | I1192V | Ata | Gta | 7 | 7 | AY.61 | 0.000733 |
ORF1ab/nsp3 | 1192 | I1192T | aTa | aCa | 7 | 7 | P.1.14 | 0.000335 |
ORF1ab/nsp3 | 1192 | I1192M | atA | atG | 6 | 6 | AY.25 | 0.000036 |
ORF1ab/nsp3 | 1192 | I1192T | aTa | aCa | 6 | 6 | AY.26 | 0.00017 |
ORF1ab/nsp3 | 1192 | I1192M | atA | atG | 6 | 6 | AY.44 | 0.000037 |
ORF1ab/nsp3 | 1192 | I1192V | Ata | Gta | 6 | 6 | AY.46.5 | 0.00119 |
ORF1ab/nsp3 | 1192 | I1192M | atA | atG | 6 | 6 | B.1 | 0.000055 |
ORF1ab/nsp3 | 1192 | I1192M | atA | atG | 6 | 6 | B.1.1.70 | 0.002046 |
ORF1ab/nsp3 | 1192 | I1192I | atA | atT | 4 | 5 | All | 0.000001 |
ORF1ab/nsp3 | 1192 | I1192I | atA | atC | 1 | 5 | All | 0 |
ORF1ab/nsp3 | 1192 | I1192T | aTa | aCa | 5 | 5 | AY.120 | 0.000186 |
ORF1ab/nsp3 | 1192 | I1192T | aTa | aCa | 5 | 5 | B.1.1 | 0.000091 |
ORF1ab/nsp3 | 1192 | I1192V | Ata | Gta | 5 | 5 | B.1.2 | 0.000044 |
ORF1ab/nsp3 | 1192 | I1192M | atA | atG | 5 | 5 | B.1.526 | 0.000118 |
ORF1ab/nsp3 | 1192 | I1192M | atA | atG | 5 | 5 | B.28 | 0.016393 |
ORF1ab/nsp3 | 1192 | I1192V | Ata | Gta | 4 | 4 | AY.103 | 0.000025 |
ORF1ab/nsp3 | 1192 | I1192T | aTa | aCa | 4 | 4 | AY.3 | 0.00004 |
ORF1ab/nsp3 | 1192 | I1192M | atA | atG | 4 | 4 | AY.39 | 0.000099 |
ORF1ab/nsp3 | 1192 | I1192M | atA | atG | 4 | 4 | AY.88 | 0.003537 |
ORF1ab/nsp3 | 1192 | I1192V | Ata | Gta | 4 | 4 | B.1.1.416 | 0.00362 |
ORF1ab/nsp3 | 1192 | I1192V | Ata | Gta | 4 | 4 | B.1.1.519 | 0.000159 |
ORF1ab/nsp3 | 1192 | I1192T | aTa | aCa | 4 | 4 | B.1.1.519 | 0.000159 |
ORF1ab/nsp3 | 1192 | I1192L | Ata | Tta | 4 | 4 | B.1.1.7 | 0.000004 |
ORF1ab/nsp3 | 1192 | I1192T | aTa | aCa | 4 | 4 | B.1.160 | 0.000125 |
ORF1ab/nsp3 | 1192 | I1192T | aTa | aCa | 4 | 4 | B.1.2 | 0.000035 |
ORF1ab/nsp3 | 1192 | I1192V | Ata | Gta | 4 | 4 | B.1.234 | 0.000528 |
ORF1ab/nsp3 | 1192 | I1192T | aTa | aCa | 4 | 4 | B.1.311 | 0.001098 |
ORF1ab/nsp3 | 1192 | I1192V | Ata | Gta | 4 | 4 | B.1.396 | 0.002823 |
ORF1ab/nsp3 | 1192 | I1192T | aTa | aCa | 4 | 4 | B.1.429 | 0.000094 |
ORF1ab/nsp3 | 1192 | I1192M | atA | atG | 4 | 4 | P.1.15 | 0.000929 |
ORF1ab/nsp3 | 1192 | I1192T | aTa | aCa | 3 | 3 | AY.100 | 0.000138 |
ORF1ab/nsp3 | 1192 | I1192M | atA | atG | 3 | 3 | AY.102 | 0.00008 |
ORF1ab/nsp3 | 1192 | I1192V | Ata | Gta | 3 | 3 | AY.120 | 0.000112 |
ORF1ab/nsp3 | 1192 | I1192T | aTa | aCa | 3 | 3 | AY.29 | 0.000047 |
ORF1ab/nsp3 | 1192 | I1192V | Ata | Gta | 3 | 3 | AY.3.1 | 0.000256 |
ORF1ab/nsp3 | 1192 | I1192T | aTa | aCa | 3 | 3 | AY.47 | 0.000093 |
ORF1ab/nsp3 | 1192 | I1192M | atA | atG | 3 | 3 | AY.47 | 0.000093 |
ORF1ab/nsp3 | 1192 | I1192V | Ata | Gta | 3 | 3 | AY.5 | 0.000062 |
ORF1ab/nsp3 | 1192 | I1192T | aTa | aCa | 3 | 3 | AY.61 | 0.000314 |
ORF1ab/nsp3 | 1192 | I1192M | atA | atG | 3 | 3 | AY.7.1 | 0.000338 |
ORF1ab/nsp3 | 1192 | I1192del | ATA | --- | 3 | 3 | B.1.1.7 | 0.000003 |
ORF1ab/nsp3 | 1192 | I1192T | aTa | aCa | 3 | 3 | B.1.177 | 0.00004 |
ORF1ab/nsp3 | 1192 | I1192V | Ata | Gta | 3 | 3 | B.1.526 | 0.000071 |
ORF1ab/nsp3 | 1192 | I1192V | Ata | Gta | 2 | 2 | A.23.1 | 0.001408 |
ORF1ab/nsp3 | 1192 | I1192V | Ata | Gta | 2 | 2 | AY.35 | 0.000466 |
ORF1ab/nsp3 | 1192 | I1192T | aTa | aCa | 2 | 2 | AY.39 | 0.000049 |
ORF1ab/nsp3 | 1192 | I1192V | Ata | Gta | 2 | 2 | AY.42 | 0.00008 |
ORF1ab/nsp3 | 1192 | I1192T | aTa | aCa | 2 | 2 | AY.46 | 0.000208 |
ORF1ab/nsp3 | 1192 | I1192V | Ata | Gta | 2 | 2 | AY.46 | 0.000208 |
ORF1ab/nsp3 | 1192 | I1192M | atA | atG | 2 | 2 | AY.46.2 | 0.001271 |
ORF1ab/nsp3 | 1192 | I1192M | atA | atG | 2 | 2 | AY.5 | 0.000041 |
ORF1ab/nsp3 | 1192 | I1192M | atA | atG | 2 | 2 | AY.6 | 0.000082 |
ORF1ab/nsp3 | 1192 | I1192M | atA | atG | 2 | 2 | AY.70 | 0.000417 |
ORF1ab/nsp3 | 1192 | I1192V | Ata | Gta | 2 | 2 | AY.74 | 0.000231 |
ORF1ab/nsp3 | 1192 | I1192T | aTa | aCa | 2 | 2 | AY.74 | 0.000231 |
ORF1ab/nsp3 | 1192 | I1192V | Ata | Gta | 2 | 2 | AY.9.1 | 0.000167 |
ORF1ab/nsp3 | 1192 | I1192M | atA | atG | 2 | 2 | AY.98.1 | 0.000097 |
ORF1ab/nsp3 | 1192 | I1192V | Ata | Gta | 2 | 2 | AY.98.1 | 0.000097 |
ORF1ab/nsp3 | 1192 | I1192T | aTa | aCa | 2 | 2 | AY.99.2 | 0.000184 |
ORF1ab/nsp3 | 1192 | I1192del | ATA | --- | 2 | 2 | B.1 | 0.000018 |
ORF1ab/nsp3 | 1192 | I1192V | Ata | Gta | 2 | 2 | B.1.1 | 0.000036 |
ORF1ab/nsp3 | 1192 | I1192V | Ata | Gta | 2 | 2 | B.1.1.222 | 0.000408 |
ORF1ab/nsp3 | 1192 | I1192M | atA | atG | 2 | 2 | B.1.1.28 | 0.000622 |
ORF1ab/nsp3 | 1192 | I1192del | ATA | --- | 2 | 2 | B.1.1.315 | 0.016949 |
ORF1ab/nsp3 | 1192 | I1192T | aTa | aCa | 2 | 2 | B.1.1.326 | 0.003521 |
ORF1ab/nsp3 | 1192 | I1192V | Ata | Gta | 2 | 2 | B.1.160 | 0.000062 |
ORF1ab/nsp3 | 1192 | I1192M | atA | atG | 2 | 2 | B.1.177.73 | 0.001133 |
ORF1ab/nsp3 | 1192 | I1192M | atA | atG | 2 | 2 | B.1.369 | 0.00057 |
ORF1ab/nsp3 | 1192 | I1192V | Ata | Gta | 2 | 2 | B.1.429 | 0.000047 |
ORF1ab/nsp3 | 1192 | I1192M | atA | atG | 2 | 2 | B.1.429 | 0.000047 |
ORF1ab/nsp3 | 1192 | I1192V | Ata | Gta | 2 | 2 | B.1.527 | 0.007407 |
ORF1ab/nsp3 | 1192 | I1192V | Ata | Gta | 2 | 2 | B.1.587 | 0.003795 |
ORF1ab/nsp3 | 1192 | I1192V | Ata | Gta | 2 | 2 | B.1.623 | 0.001073 |
ORF1ab/nsp3 | 1192 | I1192M | atA | atG | 2 | 2 | B.1.637 | 0.000146 |
ORF1ab/nsp3 | 1192 | I1192V | Ata | Gta | 2 | 2 | P.1 | 0.000032 |
ORF1ab/nsp3 | 1192 | I1192T | aTa | aCa | 2 | 2 | P.1 | 0.000032 |
ORF1ab/nsp3 | 1192 | I1192V | Ata | Gta | 2 | 2 | P.1.15 | 0.000465 |
ORF1ab/nsp3 | 1192 | I1192T | aTa | aCa | 1 | 1 | A.2.5 | 0.000499 |
ORF1ab/nsp3 | 1192 | I1192T | aTa | aCa | 1 | 1 | A.2.5.2 | 0.001572 |
ORF1ab/nsp3 | 1192 | I1192T | aTa | aCa | 1 | 1 | A.5 | 0.001923 |
ORF1ab/nsp3 | 1192 | I1192V | Ata | Gta | 1 | 1 | AA.4 | 0.009091 |
ORF1ab/nsp3 | 1192 | I1192T | aTa | aCa | 1 | 1 | AD.2 | 0.000219 |
ORF1ab/nsp3 | 1192 | I1192V | Ata | Gta | 1 | 1 | AE.8 | 0.000489 |
ORF1ab/nsp3 | 1192 | I1192del1 | atA | at- | 1 | 1 | All | 0 |
ORF1ab/nsp3 | 1192 | I1192K | aTa | aAa | 1 | 1 | All | 0 |
ORF1ab/nsp3 | 1192 | I1192T | aTa | aCa | 1 | 1 | AM.4 | 0.003571 |
ORF1ab/nsp3 | 1192 | I1192T | aTa | aCa | 1 | 1 | AY.10 | 0.00053 |
ORF1ab/nsp3 | 1192 | I1192M | atA | atG | 1 | 1 | AY.100 | 0.000046 |
ORF1ab/nsp3 | 1192 | I1192del | ATA | --- | 1 | 1 | AY.101 | 0.00049 |
ORF1ab/nsp3 | 1192 | I1192V | Ata | Gta | 1 | 1 | AY.102 | 0.000027 |
ORF1ab/nsp3 | 1192 | I1192V | Ata | Gta | 1 | 1 | AY.117 | 0.000085 |
ORF1ab/nsp3 | 1192 | I1192T | aTa | aCa | 1 | 1 | AY.117 | 0.000085 |
ORF1ab/nsp3 | 1192 | I1192V | Ata | Gta | 1 | 1 | AY.121 | 0.000135 |
ORF1ab/nsp3 | 1192 | I1192V | Ata | Gta | 1 | 1 | AY.13 | 0.000161 |
ORF1ab/nsp3 | 1192 | I1192T | aTa | aCa | 1 | 1 | AY.16 | 0.00038 |
ORF1ab/nsp3 | 1192 | I1192M | atA | atG | 1 | 1 | AY.16 | 0.00038 |
ORF1ab/nsp3 | 1192 | I1192M | atA | atG | 1 | 1 | AY.23 | 0.00007 |
ORF1ab/nsp3 | 1192 | I1192V | Ata | Gta | 1 | 1 | AY.23 | 0.00007 |
ORF1ab/nsp3 | 1192 | I1192V | Ata | Gta | 1 | 1 | AY.23.1 | 0.000417 |
ORF1ab/nsp3 | 1192 | I1192del | ATA | --- | 1 | 1 | AY.25 | 0.000006 |
ORF1ab/nsp3 | 1192 | I1192M | atA | atG | 1 | 1 | AY.27 | 0.000065 |
ORF1ab/nsp3 | 1192 | I1192T | aTa | aCa | 1 | 1 | AY.29.1 | 0.000221 |
ORF1ab/nsp3 | 1192 | I1192T | aTa | aCa | 1 | 1 | AY.33 | 0.000067 |
ORF1ab/nsp3 | 1192 | I1192V | Ata | Gta | 1 | 1 | AY.33 | 0.000067 |
ORF1ab/nsp3 | 1192 | I1192T | aTa | aCa | 1 | 1 | AY.34 | 0.000097 |
ORF1ab/nsp3 | 1192 | I1192V | Ata | Gta | 1 | 1 | AY.34.1 | 0.00051 |
ORF1ab/nsp3 | 1192 | I1192M | atA | atG | 1 | 1 | AY.39.1 | 0.00004 |
ORF1ab/nsp3 | 1192 | I1192I | atA | atT | 1 | 1 | AY.4 | 0.000002 |
ORF1ab/nsp3 | 1192 | I1192L | Ata | Tta | 1 | 1 | AY.4 | 0.000002 |
ORF1ab/nsp3 | 1192 | I1192del | ATA | --- | 1 | 1 | AY.43 | 0.000004 |
ORF1ab/nsp3 | 1192 | I1192T | aTa | aCa | 1 | 1 | AY.45 | 0.000122 |
ORF1ab/nsp3 | 1192 | I1192T | aTa | aCa | 1 | 1 | AY.46.2 | 0.000635 |
ORF1ab/nsp3 | 1192 | I1192M | atA | atG | 1 | 1 | AY.46.4 | 0.000165 |
ORF1ab/nsp3 | 1192 | I1192T | aTa | aCa | 1 | 1 | AY.46.4 | 0.000165 |
ORF1ab/nsp3 | 1192 | I1192V | Ata | Gta | 1 | 1 | AY.5.3 | 0.000337 |
ORF1ab/nsp3 | 1192 | I1192V | Ata | Gta | 1 | 1 | AY.54 | 0.000095 |
ORF1ab/nsp3 | 1192 | I1192T | aTa | aCa | 1 | 1 | AY.59 | 0.00053 |
ORF1ab/nsp3 | 1192 | I1192del | ATA | --- | 1 | 1 | AY.66 | 0.00107 |
ORF1ab/nsp3 | 1192 | I1192L | Ata | Tta | 1 | 1 | AY.67 | 0.000464 |
ORF1ab/nsp3 | 1192 | I1192V | Ata | Gta | 1 | 1 | AY.7 | 0.000196 |
ORF1ab/nsp3 | 1192 | I1192T | aTa | aCa | 1 | 1 | AY.75.1 | 0.00018 |
ORF1ab/nsp3 | 1192 | I1192del | ATA | --- | 1 | 1 | AY.85 | 0.000427 |
ORF1ab/nsp3 | 1192 | I1192T | aTa | aCa | 1 | 1 | AY.9 | 0.000068 |
ORF1ab/nsp3 | 1192 | I1192V | AtA | GtG | 1 | 1 | AY.9.2 | 0.000037 |
ORF1ab/nsp3 | 1192 | I1192T | aTa | aCa | 1 | 1 | AY.9.2 | 0.000037 |
ORF1ab/nsp3 | 1192 | I1192T | aTa | aCa | 1 | 1 | AY.92 | 0.000287 |
ORF1ab/nsp3 | 1192 | I1192L | Ata | Tta | 1 | 1 | AY.93 | 0.000273 |
ORF1ab/nsp3 | 1192 | I1192M | atA | atG | 1 | 1 | AY.95 | 0.000761 |
ORF1ab/nsp3 | 1192 | I1192V | Ata | Gta | 1 | 1 | AY.98 | 0.000079 |
ORF1ab/nsp3 | 1192 | I1192M | atA | atG | 1 | 1 | B | 0.000128 |
ORF1ab/nsp3 | 1192 | I1192I | atA | atT | 1 | 1 | B.1 | 0.000009 |
ORF1ab/nsp3 | 1192 | I1192L | Ata | Tta | 1 | 1 | B.1 | 0.000009 |
ORF1ab/nsp3 | 1192 | I1192del | ATA | --- | 1 | 1 | B.1.1 | 0.000018 |
ORF1ab/nsp3 | 1192 | I1192M | atA | atG | 1 | 1 | B.1.1.216 | 0.00089 |
ORF1ab/nsp3 | 1192 | I1192V | Ata | Gta | 1 | 1 | B.1.1.306 | 0.000438 |
ORF1ab/nsp3 | 1192 | I1192V | Ata | Gta | 1 | 1 | B.1.1.317 | 0.000412 |
ORF1ab/nsp3 | 1192 | I1192del | ATA | --- | 1 | 1 | B.1.1.348 | 0.000796 |
ORF1ab/nsp3 | 1192 | I1192V | Ata | Gta | 1 | 1 | B.1.1.362 | 0.005618 |
ORF1ab/nsp3 | 1192 | I1192I | atA | atC | 1 | 1 | B.1.1.7 | 0.000001 |
ORF1ab/nsp3 | 1192 | I1192T | aTa | aCa | 1 | 1 | B.1.1.8 | 0.003584 |
ORF1ab/nsp3 | 1192 | I1192M | atA | atG | 1 | 1 | B.1.160 | 0.000031 |
ORF1ab/nsp3 | 1192 | I1192T | aTa | aCa | 1 | 1 | B.1.160.12 | 0.00641 |
ORF1ab/nsp3 | 1192 | I1192del | ATA | --- | 1 | 1 | B.1.177 | 0.000013 |
ORF1ab/nsp3 | 1192 | I1192T | aTa | aCa | 1 | 1 | B.1.177.12 | 0.000152 |
ORF1ab/nsp3 | 1192 | I1192L | Ata | Cta | 1 | 1 | B.1.177.4 | 0.000211 |
ORF1ab/nsp3 | 1192 | I1192L | Ata | Tta | 1 | 1 | B.1.177.62 | 0.001192 |
ORF1ab/nsp3 | 1192 | I1192T | aTa | aCa | 1 | 1 | B.1.177.62 | 0.001192 |
ORF1ab/nsp3 | 1192 | I1192del | ATA | --- | 1 | 1 | B.1.177.62 | 0.001192 |
ORF1ab/nsp3 | 1192 | I1192M | atA | atG | 1 | 1 | B.1.177.69 | 0.001484 |
ORF1ab/nsp3 | 1192 | I1192M | atA | atG | 1 | 1 | B.1.177.79 | 0.002342 |
ORF1ab/nsp3 | 1192 | I1192M | atA | atG | 1 | 1 | B.1.177.81 | 0.000189 |
ORF1ab/nsp3 | 1192 | I1192M | atA | atG | 1 | 1 | B.1.177.83 | 0.001481 |
ORF1ab/nsp3 | 1192 | I1192T | aTa | aCa | 1 | 1 | B.1.199 | 0.004132 |
ORF1ab/nsp3 | 1192 | I1192del1 | atA | at- | 1 | 1 | B.1.2 | 0.000009 |
ORF1ab/nsp3 | 1192 | I1192V | Ata | Gta | 1 | 1 | B.1.221 | 0.000071 |
ORF1ab/nsp3 | 1192 | I1192T | aTa | aCa | 1 | 1 | B.1.237 | 0.004975 |
ORF1ab/nsp3 | 1192 | I1192I | atA | atT | 1 | 1 | B.1.241 | 0.000812 |
ORF1ab/nsp3 | 1192 | I1192L | Ata | Cta | 1 | 1 | B.1.243 | 0.00007 |
ORF1ab/nsp3 | 1192 | I1192T | aTa | aCa | 1 | 1 | B.1.258 | 0.000067 |
ORF1ab/nsp3 | 1192 | I1192M | atA | atG | 1 | 1 | B.1.258.11 | 0.000396 |
ORF1ab/nsp3 | 1192 | I1192V | Ata | Gta | 1 | 1 | B.1.311 | 0.000275 |
ORF1ab/nsp3 | 1192 | I1192M | atA | atG | 1 | 1 | B.1.340 | 0.004292 |
ORF1ab/nsp3 | 1192 | I1192V | Ata | Gta | 1 | 1 | B.1.346 | 0.001311 |
ORF1ab/nsp3 | 1192 | I1192V | Ata | Gta | 1 | 1 | B.1.351 | 0.00003 |
ORF1ab/nsp3 | 1192 | I1192T | aTa | aCa | 1 | 1 | B.1.351 | 0.00003 |
ORF1ab/nsp3 | 1192 | I1192T | aTa | aCa | 1 | 1 | B.1.351.2 | 0.000303 |
ORF1ab/nsp3 | 1192 | I1192T | aTa | aCa | 1 | 1 | B.1.36 | 0.000146 |
ORF1ab/nsp3 | 1192 | I1192M | atA | atG | 1 | 1 | B.1.36.29 | 0.000517 |
ORF1ab/nsp3 | 1192 | I1192V | Ata | Gta | 1 | 1 | B.1.369 | 0.000285 |
ORF1ab/nsp3 | 1192 | I1192M | atA | atG | 1 | 1 | B.1.377 | 0.004566 |
ORF1ab/nsp3 | 1192 | I1192M | atA | atG | 1 | 1 | B.1.396 | 0.000706 |
ORF1ab/nsp3 | 1192 | I1192V | Ata | Gta | 1 | 1 | B.1.422 | 0.000812 |
ORF1ab/nsp3 | 1192 | I1192M | atA | atG | 1 | 1 | B.1.427 | 0.00005 |
ORF1ab/nsp3 | 1192 | I1192T | aTa | aCa | 1 | 1 | B.1.427 | 0.00005 |
ORF1ab/nsp3 | 1192 | I1192V | Ata | Gta | 1 | 1 | B.1.428 | 0.00102 |
ORF1ab/nsp3 | 1192 | I1192V | Ata | Gta | 1 | 1 | B.1.517 | 0.000427 |
ORF1ab/nsp3 | 1192 | I1192M | atA | atG | 1 | 1 | B.1.576 | 0.000907 |
ORF1ab/nsp3 | 1192 | I1192V | Ata | Gta | 1 | 1 | B.1.576 | 0.000907 |
ORF1ab/nsp3 | 1192 | I1192I | atA | atT | 1 | 1 | B.1.577 | 0.000687 |
ORF1ab/nsp3 | 1192 | I1192V | Ata | Gta | 1 | 1 | B.1.595 | 0.000261 |
ORF1ab/nsp3 | 1192 | I1192L | Ata | Tta | 1 | 1 | B.1.617.2 | 0.000004 |
ORF1ab/nsp3 | 1192 | I1192M | atA | atG | 1 | 1 | B.1.621 | 0.000089 |
ORF1ab/nsp3 | 1192 | I1192T | aTa | aCa | 1 | 1 | B.1.621 | 0.000089 |
ORF1ab/nsp3 | 1192 | I1192V | Ata | Gta | 1 | 1 | B.1.621 | 0.000089 |
ORF1ab/nsp3 | 1192 | I1192del | ATA | --- | 1 | 1 | B.1.630 | 0.005236 |
ORF1ab/nsp3 | 1192 | I1192V | Ata | Gta | 1 | 1 | B.1.637 | 0.000073 |
ORF1ab/nsp3 | 1192 | I1192M | atA | atG | 1 | 1 | C.1.2 | 0.004255 |
ORF1ab/nsp3 | 1192 | I1192T | aTa | aCa | 1 | 1 | C.2.1 | 0.006667 |
ORF1ab/nsp3 | 1192 | I1192K | aTa | aAa | 1 | 1 | C.35 | 0.000774 |
ORF1ab/nsp3 | 1192 | I1192T | aTa | aCa | 1 | 1 | C.36 | 0.000911 |
ORF1ab/nsp3 | 1192 | I1192del | ATA | --- | 1 | 1 | C.37 | 0.000116 |
ORF1ab/nsp3 | 1192 | I1192T | aTa | aCa | 1 | 1 | D.2 | 0.000075 |
ORF1ab/nsp3 | 1192 | I1192T | aTa | aCa | 1 | 1 | N.5 | 0.001767 |
ORF1ab/nsp3 | 1192 | I1192M | atA | atG | 1 | 1 | P.1 | 0.000016 |
ORF1ab/nsp3 | 1192 | I1192del | ATA | --- | 1 | 1 | P.1 | 0.000016 |
ORF1ab/nsp3 | 1192 | I1192V | Ata | Gta | 1 | 1 | P.1.12 | 0.000484 |
ORF1ab/nsp3 | 1192 | I1192V | Ata | Gta | 1 | 1 | P.1.14 | 0.000048 |
ORF1ab/nsp3 | 1192 | I1192V | Ata | Gta | 1 | 1 | P.1.2 | 0.001156 |
ORF1ab/nsp3 | 1192 | I1192T | aTa | aCa | 1 | 1 | P.1.4 | 0.000977 |
ORF1ab/nsp3 | 1192 | I1192T | aTa | aCa | 1 | 1 | P.1.8 | 0.004785 |
ORF1ab/nsp3 | 1192 | I1192V | Ata | Gta | 1 | 1 | P.7 | 0.004367 |
ORF1ab/nsp3 | 1192 | I1192T | aTa | aCa | 1 | 1 | Q.1 | 0.000126 |
ORF1ab/nsp3 | 1192 | I1192V | Ata | Gta | 1 | 1 | Q.1 | 0.000126 |
ORF1ab/nsp3 | 1192 | I1192M | atA | atG | 1 | 1 | Q.3 | 0.000145 |
ORF1ab/nsp3 | 1192 | I1192V | Ata | Gta | 1 | 1 | R.1 | 0.00009 |
ORF1ab/nsp3 | 1192 | I1192M | atA | atG | 1 | 1 | R.1 | 0.00009 |
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CoV-GLUE is still in development. CoV-GLUE was originally developed as part of COG-UK by Josh Singer using the GLUE framework at the MRC-University of Glasgow Centre for Virus Research (CVR). In 2021 it was redeveloped by Richard Orton to scale to the millions of genome sequences available. We acknowledge support from the MRC (MC_UU_12014/12), WT (220977/Z/20/Z) and UKRI G2P (MR/W005611/1). Please contact Richard Orton with any queries: Richard.Orton@glasgow.ac.uk
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