CoV-GLUE Mutation

CoV-GLUE Mutation: ORF = ORF1ab/nsp3 : CodonNum = 1189

Details of the codons used for the mutation across all lineages (CodonProp is the proportion each codon is used for this AA mutation):

ORF	CodonNum	Mut	ORF1abMut	MutType	RefCodon	MutCodon	AACount	CodonCount	CodonProp	Genome Position
ORF1ab/nsp3	1189	T1189T	T2007T	syn	acC	acT	179676	179228	0.997507	6284-6286
ORF1ab/nsp3	1189	T1189T	T2007T	syn	acC	acA	179676	422	0.00234867	6284-6286
ORF1ab/nsp3	1189	T1189T	T2007T	syn	acC	acG	179676	26	0.000144705	6284-6286
ORF1ab/nsp3	1189	T1189I	T2007I	nonsyn	aCc	aTc	21255	19006	0.89419	6284-6286
ORF1ab/nsp3	1189	T1189I	T2007I	nonsyn	aCC	aTT	21255	2247	0.105716	6284-6286
ORF1ab/nsp3	1189	T1189I	T2007I	nonsyn	aCC	aTA	21255	2	0.0000940955	6284-6286
ORF1ab/nsp3	1189	T1189A	T2007A	nonsyn	Acc	Gcc	383	383	1	6284-6286
ORF1ab/nsp3	1189	T1189N	T2007N	nonsyn	aCc	aAc	60	51	0.85	6284-6286
ORF1ab/nsp3	1189	T1189N	T2007N	nonsyn	aCC	aAT	60	9	0.15	6284-6286
ORF1ab/nsp3	1189	T1189del	T2007del	del	ACC	---	22	22	1	6284-6286
ORF1ab/nsp3	1189	T1189S	T2007S	nonsyn	aCc	aGc	10	6	0.6	6284-6286
ORF1ab/nsp3	1189	T1189S	T2007S	nonsyn	Acc	Tcc	10	4	0.4	6284-6286
ORF1ab/nsp3	1189	T1189del2	T2007del2	del	ACc	--c	3	3	1	6284-6286
ORF1ab/nsp3	1189	T1189del1	T2007del1	del	aCc	a-c	2	2	1	6284-6286
ORF1ab/nsp3	1189	T1189V	T2007V	nonsyn	ACc	GTc	1	1	1	6284-6286
ORF1ab/nsp3	1189	T1189X	T2007X	nonsyn	ACC	TAG	1	1	1	6284-6286
ORF1ab/nsp3	1189	T1189P	T2007P	nonsyn	Acc	Ccc	1	1	1	6284-6286
ORF1ab/nsp3	1189	T1189H	T2007H	nonsyn	ACc	CAc	1	1	1	6284-6286
ORF1ab/nsp3	1189	T1189M	T2007M	nonsyn	aCC	aTG	1	1	1	6284-6286

Details of the mutation no within lineages (LineageCodonProp is the proportion the codon is observed at, at this particular site, on each lineage):

ORF	CodonNum	Mut	RefCodon	MutCodon	CodonCount	AACount	Lineage	LineageCodonProp
ORF1ab/nsp3	1189	T1189T	acC	acT	179228	179676	All	0.034279
ORF1ab/nsp3	1189	T1189T	acC	acA	422	179676	All	0.000081
ORF1ab/nsp3	1189	T1189T	acC	acG	26	179676	All	0.000005
ORF1ab/nsp3	1189	T1189T	acC	acT	73765	73766	B.1.177	0.971308
ORF1ab/nsp3	1189	T1189T	acC	acA	1	73766	B.1.177	0.000013
ORF1ab/nsp3	1189	T1189I	aCc	aTc	19006	21255	All	0.003635
ORF1ab/nsp3	1189	T1189I	aCC	aTT	2247	21255	All	0.00043
ORF1ab/nsp3	1189	T1189I	aCC	aTA	2	21255	All	0
ORF1ab/nsp3	1189	T1189T	acC	acT	13044	13044	B.1.177.21	0.997476
ORF1ab/nsp3	1189	T1189I	aCc	aTc	8703	8730	B.1.525	0.984836
ORF1ab/nsp3	1189	T1189I	aCC	aTT	25	8730	B.1.525	0.002829
ORF1ab/nsp3	1189	T1189I	aCC	aTA	2	8730	B.1.525	0.000226
ORF1ab/nsp3	1189	T1189T	acC	acT	6570	6570	B.1.177.12	0.996663
ORF1ab/nsp3	1189	T1189T	acC	acT	5962	5962	B.1.177.7	0.982855
ORF1ab/nsp3	1189	T1189T	acC	acT	5359	5359	B.1.177.86	0.983122
ORF1ab/nsp3	1189	T1189T	acC	acT	5234	5234	B.1.177.81	0.990913
ORF1ab/nsp3	1189	T1189T	acC	acT	4727	4727	B.1.177.4	0.997678
ORF1ab/nsp3	1189	T1189T	acC	acT	4452	4452	B.1.177.60	0.972477
ORF1ab/nsp3	1189	T1189T	acC	acT	3512	3512	B.1.177.57	0.986794
ORF1ab/nsp3	1189	T1189T	acC	acT	2562	2562	B.1.177.45	0.976744
ORF1ab/nsp3	1189	T1189T	acC	acT	1972	2216	B.1.1.7	0.001765
ORF1ab/nsp3	1189	T1189T	acC	acA	237	2216	B.1.1.7	0.000212
ORF1ab/nsp3	1189	T1189T	acC	acG	7	2216	B.1.1.7	0.000006
ORF1ab/nsp3	1189	T1189T	acC	acT	2079	2079	B.1.177.82	0.992363
ORF1ab/nsp3	1189	T1189T	acC	acT	1850	1850	B.1.177.44	0.960042
ORF1ab/nsp3	1189	T1189T	acC	acT	1643	1643	B.1.177.54	0.996361
ORF1ab/nsp3	1189	T1189T	acC	acT	1574	1574	B.1.177.15	0.99306
ORF1ab/nsp3	1189	T1189T	acC	acT	1501	1501	B.1.177.16	0.997342
ORF1ab/nsp3	1189	T1189T	acC	acT	1501	1501	B.1.177.65	0.998669
ORF1ab/nsp3	1189	T1189T	acC	acT	1491	1491	B.1.177.56	0.995327
ORF1ab/nsp3	1189	T1189I	aCc	aTc	1454	1470	B.1.232	0.7813
ORF1ab/nsp3	1189	T1189I	aCC	aTT	16	1470	B.1.232	0.008598
ORF1ab/nsp3	1189	T1189T	acC	acT	1444	1451	B.1	0.013226
ORF1ab/nsp3	1189	T1189T	acC	acG	4	1451	B.1	0.000037
ORF1ab/nsp3	1189	T1189T	acC	acA	3	1451	B.1	0.000027
ORF1ab/nsp3	1189	T1189T	acC	acT	1437	1437	B.1.177.35	0.993089
ORF1ab/nsp3	1189	T1189T	acC	acT	1368	1368	B.1.177.87	0.995633
ORF1ab/nsp3	1189	T1189T	acC	acT	1367	1367	B.1.177.77	0.992738
ORF1ab/nsp3	1189	T1189T	acC	acT	1326	1326	B.1.177.8	0.997743
ORF1ab/nsp3	1189	T1189T	acC	acT	1216	1216	B.1.177.17	0.998358
ORF1ab/nsp3	1189	T1189T	acC	acT	1209	1210	B.1.177.73	0.684598
ORF1ab/nsp3	1189	T1189T	acC	acG	1	1210	B.1.177.73	0.000566
ORF1ab/nsp3	1189	T1189I	aCc	aTc	1207	1207	B.1.1.7	0.001081
ORF1ab/nsp3	1189	T1189I	aCC	aTT	1195	1200	B.1.177	0.015735
ORF1ab/nsp3	1189	T1189I	aCc	aTc	5	1200	B.1.177	0.000066
ORF1ab/nsp3	1189	T1189I	aCc	aTc	1177	1196	B.1.565	0.953809
ORF1ab/nsp3	1189	T1189I	aCC	aTT	19	1196	B.1.565	0.015397
ORF1ab/nsp3	1189	T1189I	aCc	aTc	1157	1159	B.1.617.2	0.004357
ORF1ab/nsp3	1189	T1189I	aCC	aTT	2	1159	B.1.617.2	0.000008
ORF1ab/nsp3	1189	T1189I	aCc	aTc	1134	1134	AY.39	0.028023
ORF1ab/nsp3	1189	T1189T	acC	acT	1113	1113	B.1.177.42	0.995528
ORF1ab/nsp3	1189	T1189T	acC	acT	1101	1101	B.1.177.10	0.966637
ORF1ab/nsp3	1189	T1189T	acC	acT	1081	1081	B.1.177.46	0.992654
ORF1ab/nsp3	1189	T1189T	acC	acT	1008	1008	B.1.177.6	0.984375
ORF1ab/nsp3	1189	T1189T	acC	acT	952	952	B.1.177.75	0.990635
ORF1ab/nsp3	1189	T1189T	acC	acT	859	859	B.1.177.18	0.99652
ORF1ab/nsp3	1189	T1189T	acC	acT	838	838	B.1.221	0.059526
ORF1ab/nsp3	1189	T1189T	acC	acT	818	818	B.1.177.62	0.97497
ORF1ab/nsp3	1189	T1189T	acC	acT	805	805	B.1.177.5	1
ORF1ab/nsp3	1189	T1189T	acC	acT	766	766	B.1.177.24	0.992228
ORF1ab/nsp3	1189	T1189T	acC	acT	748	748	B.1.177.9	0.996005
ORF1ab/nsp3	1189	T1189T	acC	acT	744	744	B.1.177.58	0.990679
ORF1ab/nsp3	1189	T1189T	acC	acT	739	739	W.4	0.998649
ORF1ab/nsp3	1189	T1189T	acC	acT	736	736	B.1.177.32	0.993252
ORF1ab/nsp3	1189	T1189T	acC	acT	695	695	B.1.177.19	0.994278
ORF1ab/nsp3	1189	T1189T	acC	acT	674	674	B.1.177.69	1
ORF1ab/nsp3	1189	T1189T	acC	acT	659	659	B.1.177.20	1
ORF1ab/nsp3	1189	T1189T	acC	acT	644	644	B.1.177.43	0.951256
ORF1ab/nsp3	1189	T1189T	acC	acT	605	605	B.1.177.33	0.995066
ORF1ab/nsp3	1189	T1189T	acC	acT	589	589	B.1.177.11	1
ORF1ab/nsp3	1189	T1189T	acC	acT	565	565	B.1.177.52	0.99297
ORF1ab/nsp3	1189	T1189T	acC	acT	541	546	AY.4	0.000842
ORF1ab/nsp3	1189	T1189T	acC	acA	4	546	AY.4	0.000006
ORF1ab/nsp3	1189	T1189T	acC	acG	1	546	AY.4	0.000002
ORF1ab/nsp3	1189	T1189T	acC	acT	523	523	B.1.177.80	1
ORF1ab/nsp3	1189	T1189T	acC	acT	429	429	B.1.177.55	1
ORF1ab/nsp3	1189	T1189T	acC	acT	424	424	B.1.177.79	0.992974
ORF1ab/nsp3	1189	T1189T	acC	acT	413	413	B.1.177.53	0.988038
ORF1ab/nsp3	1189	T1189T	acC	acT	400	400	B.1.177.76	0.997506
ORF1ab/nsp3	1189	T1189T	acC	acT	398	398	B.1.177.30	1
ORF1ab/nsp3	1189	T1189T	acC	acT	395	395	B.1.177.41	0.9875
ORF1ab/nsp3	1189	T1189A	Acc	Gcc	383	383	All	0.000073
ORF1ab/nsp3	1189	T1189I	aCc	aTc	377	377	AY.43	0.00167
ORF1ab/nsp3	1189	T1189I	aCc	aTc	376	376	AY.103	0.002335
ORF1ab/nsp3	1189	T1189I	aCC	aTT	375	375	B.1.177.83	0.555556
ORF1ab/nsp3	1189	T1189T	acC	acT	370	370	B.1.177.63	1
ORF1ab/nsp3	1189	T1189T	acC	acT	344	344	Z.1	0.99422
ORF1ab/nsp3	1189	T1189I	aCc	aTc	305	305	B.1.1.222	0.06222
ORF1ab/nsp3	1189	T1189I	aCc	aTc	304	304	AY.26	0.008606
ORF1ab/nsp3	1189	T1189T	acC	acT	300	300	B.1.177.23	0.970874
ORF1ab/nsp3	1189	T1189T	acC	acT	296	296	B.1.177.83	0.438519
ORF1ab/nsp3	1189	T1189T	acC	acT	286	286	B.1.177.72	0.969492
ORF1ab/nsp3	1189	T1189T	acC	acT	266	268	B.1.1	0.004825
ORF1ab/nsp3	1189	T1189T	acC	acA	1	268	B.1.1	0.000018
ORF1ab/nsp3	1189	T1189T	acC	acG	1	268	B.1.1	0.000018
ORF1ab/nsp3	1189	T1189I	aCc	aTc	242	263	B.1	0.002217
ORF1ab/nsp3	1189	T1189I	aCC	aTT	21	263	B.1	0.000192
ORF1ab/nsp3	1189	T1189T	acC	acT	246	262	B.1.617.2	0.000926
ORF1ab/nsp3	1189	T1189T	acC	acA	16	262	B.1.617.2	0.00006
ORF1ab/nsp3	1189	T1189T	acC	acT	257	257	U.3	0.992278
ORF1ab/nsp3	1189	T1189T	acC	acT	251	252	AY.25	0.00151
ORF1ab/nsp3	1189	T1189T	acC	acG	1	252	AY.25	0.000006
ORF1ab/nsp3	1189	T1189I	aCc	aTc	243	243	AY.25	0.001462
ORF1ab/nsp3	1189	T1189T	acC	acT	217	226	B.1.2	0.001911
ORF1ab/nsp3	1189	T1189T	acC	acG	7	226	B.1.2	0.000062
ORF1ab/nsp3	1189	T1189T	acC	acA	2	226	B.1.2	0.000018
ORF1ab/nsp3	1189	T1189T	acC	acT	220	220	B.1.177.2	1
ORF1ab/nsp3	1189	T1189T	acC	acT	217	217	B.1.177.51	0.990868
ORF1ab/nsp3	1189	T1189T	acC	acT	205	205	W.2	0.990338
ORF1ab/nsp3	1189	T1189T	acC	acT	202	202	B.1.177.48	0.63125
ORF1ab/nsp3	1189	T1189T	acC	acT	195	195	B.1.177.50	0.915493
ORF1ab/nsp3	1189	T1189T	acC	acT	192	192	B.1.177.40	0.989691
ORF1ab/nsp3	1189	T1189A	Acc	Gcc	191	191	AY.4.2	0.004143
ORF1ab/nsp3	1189	T1189T	acC	acT	190	190	W.3	1
ORF1ab/nsp3	1189	T1189T	acC	acT	182	187	AY.43	0.000806
ORF1ab/nsp3	1189	T1189T	acC	acA	5	187	AY.43	0.000022
ORF1ab/nsp3	1189	T1189T	acC	acT	183	183	B.1.177.85	0.994565
ORF1ab/nsp3	1189	T1189I	aCc	aTc	180	181	B.1.526	0.004231
ORF1ab/nsp3	1189	T1189I	aCC	aTT	1	181	B.1.526	0.000024
ORF1ab/nsp3	1189	T1189I	aCc	aTc	180	180	AY.4	0.00028
ORF1ab/nsp3	1189	T1189T	acC	acT	168	168	B.1.177.70	0.994083
ORF1ab/nsp3	1189	T1189T	acC	acT	167	167	B.1.160	0.005208
ORF1ab/nsp3	1189	T1189I	aCC	aTT	164	164	B.1.177.14	1
ORF1ab/nsp3	1189	T1189T	acC	acA	83	153	AY.44	0.000505
ORF1ab/nsp3	1189	T1189T	acC	acT	70	153	AY.44	0.000426
ORF1ab/nsp3	1189	T1189T	acC	acT	143	143	B.1.177.26	1
ORF1ab/nsp3	1189	T1189T	acC	acT	143	143	B.1.177.84	0.953333
ORF1ab/nsp3	1189	T1189I	aCc	aTc	141	141	B.1.243	0.009811
ORF1ab/nsp3	1189	T1189T	acC	acT	138	138	AA.1	1
ORF1ab/nsp3	1189	T1189T	acC	acT	134	134	B.1.177.28	0.992593
ORF1ab/nsp3	1189	T1189T	acC	acT	131	131	B.1.177.3	1
ORF1ab/nsp3	1189	T1189T	acC	acT	130	130	AA.2	1
ORF1ab/nsp3	1189	T1189T	acC	acT	126	130	AY.103	0.000782
ORF1ab/nsp3	1189	T1189T	acC	acA	4	130	AY.103	0.000025
ORF1ab/nsp3	1189	T1189T	acC	acT	127	127	B.1.177.67	0.969466
ORF1ab/nsp3	1189	T1189I	aCC	aTT	118	118	B.1.177.48	0.36875
ORF1ab/nsp3	1189	T1189T	acC	acT	114	114	B.1.160.30	0.339286
ORF1ab/nsp3	1189	T1189T	acC	acT	114	114	U.2	1
ORF1ab/nsp3	1189	T1189T	acC	acT	110	110	AA.4	1
ORF1ab/nsp3	1189	T1189T	acC	acT	109	109	AA.7	1
ORF1ab/nsp3	1189	T1189T	acC	acT	109	109	W.1	0.947826
ORF1ab/nsp3	1189	T1189T	acC	acT	107	108	AY.3	0.001064
ORF1ab/nsp3	1189	T1189T	acC	acA	1	108	AY.3	0.00001
ORF1ab/nsp3	1189	T1189T	acC	acT	106	106	B.1.177.27	1
ORF1ab/nsp3	1189	T1189I	aCc	aTc	105	105	B.1.621	0.009295
ORF1ab/nsp3	1189	T1189T	acC	acT	102	102	B.1.177.78	0.990291
ORF1ab/nsp3	1189	T1189T	acC	acT	99	99	B.1.177.71	1
ORF1ab/nsp3	1189	T1189T	acC	acT	96	96	B.1.177.38	1
ORF1ab/nsp3	1189	T1189I	aCc	aTc	89	89	B.1.429	0.002094
ORF1ab/nsp3	1189	T1189T	acC	acT	87	87	B.1.427	0.004393
ORF1ab/nsp3	1189	T1189T	acC	acT	86	87	B.1.637	0.006284
ORF1ab/nsp3	1189	T1189T	acC	acG	1	87	B.1.637	0.000073
ORF1ab/nsp3	1189	T1189T	acC	acT	84	84	AY.75.1	0.015146
ORF1ab/nsp3	1189	T1189T	acC	acT	81	81	B.1.177.88	1
ORF1ab/nsp3	1189	T1189I	aCC	aTT	79	79	B.1.177.60	0.017256
ORF1ab/nsp3	1189	T1189T	acC	acT	78	78	U.1	1
ORF1ab/nsp3	1189	T1189T	acC	acT	78	78	Y.1	1
ORF1ab/nsp3	1189	T1189T	acC	acT	77	77	B.1.177.47	1
ORF1ab/nsp3	1189	T1189I	aCc	aTc	76	76	B.1.2	0.000669
ORF1ab/nsp3	1189	T1189T	acC	acT	74	76	P.1	0.001166
ORF1ab/nsp3	1189	T1189T	acC	acA	2	76	P.1	0.000032
ORF1ab/nsp3	1189	T1189T	acC	acT	70	73	AY.102	0.001856
ORF1ab/nsp3	1189	T1189T	acC	acA	3	73	AY.102	0.00008
ORF1ab/nsp3	1189	T1189I	aCc	aTc	72	72	AY.44	0.000438
ORF1ab/nsp3	1189	T1189T	acC	acT	70	71	B.1.526	0.001645
ORF1ab/nsp3	1189	T1189T	acC	acG	1	71	B.1.526	0.000024
ORF1ab/nsp3	1189	T1189I	aCc	aTc	68	70	P.1	0.001071
ORF1ab/nsp3	1189	T1189I	aCC	aTT	2	70	P.1	0.000032
ORF1ab/nsp3	1189	T1189T	acC	acT	63	68	B.1.258	0.004192
ORF1ab/nsp3	1189	T1189T	acC	acA	5	68	B.1.258	0.000333
ORF1ab/nsp3	1189	T1189T	acC	acT	67	67	B.1.177.25	1
ORF1ab/nsp3	1189	T1189T	acC	acT	66	66	B.1.177.74	1
ORF1ab/nsp3	1189	T1189T	acC	acT	65	65	B.1.177.39	1
ORF1ab/nsp3	1189	T1189T	acC	acT	65	65	B.1.177.68	0.984848
ORF1ab/nsp3	1189	T1189T	acC	acT	62	62	AA.5	1
ORF1ab/nsp3	1189	T1189T	acC	acT	62	62	AA.6	1
ORF1ab/nsp3	1189	T1189T	acC	acT	62	62	B.1.177.36	1
ORF1ab/nsp3	1189	T1189T	acC	acT	61	61	B.1.177.59	0.983871
ORF1ab/nsp3	1189	T1189N	aCc	aAc	51	60	All	0.00001
ORF1ab/nsp3	1189	T1189N	aCC	aAT	9	60	All	0.000002
ORF1ab/nsp3	1189	T1189A	Acc	Gcc	60	60	AY.4	0.000093
ORF1ab/nsp3	1189	T1189T	acC	acT	60	60	B.1.1.519	0.002383
ORF1ab/nsp3	1189	T1189I	aCc	aTc	58	58	B.1.1.316	0.053654
ORF1ab/nsp3	1189	T1189T	acC	acT	58	58	B.1.1.37	0.011186
ORF1ab/nsp3	1189	T1189I	aCC	aTT	57	57	B.1.177.73	0.032276
ORF1ab/nsp3	1189	T1189I	aCc	aTc	53	53	AY.102	0.001405
ORF1ab/nsp3	1189	T1189T	acC	acT	52	52	AY.5	0.001074
ORF1ab/nsp3	1189	T1189T	acC	acT	51	52	B.1.596	0.004444
ORF1ab/nsp3	1189	T1189T	acC	acG	1	52	B.1.596	0.000087
ORF1ab/nsp3	1189	T1189I	aCc	aTc	50	50	AY.54	0.004767
ORF1ab/nsp3	1189	T1189A	Acc	Gcc	50	50	B.1.2	0.00044
ORF1ab/nsp3	1189	T1189I	aCc	aTc	44	47	B.1.1	0.000798
ORF1ab/nsp3	1189	T1189I	aCC	aTT	3	47	B.1.1	0.000054
ORF1ab/nsp3	1189	T1189I	aCc	aTc	46	47	C.35	0.035604
ORF1ab/nsp3	1189	T1189I	aCC	aTT	1	47	C.35	0.000774
ORF1ab/nsp3	1189	T1189T	acC	acT	45	45	AA.8	1
ORF1ab/nsp3	1189	T1189I	aCc	aTc	45	45	AY.4.2	0.000976
ORF1ab/nsp3	1189	T1189I	aCC	aTT	45	45	B.1.177.57	0.012644
ORF1ab/nsp3	1189	T1189T	acC	acT	45	45	XA	1
ORF1ab/nsp3	1189	T1189T	acC	acT	44	44	V.1	1
ORF1ab/nsp3	1189	T1189I	aCc	aTc	42	43	B.1.160	0.00131
ORF1ab/nsp3	1189	T1189I	aCC	aTT	1	43	B.1.160	0.000031
ORF1ab/nsp3	1189	T1189T	acC	acT	43	43	B.1.36.29	0.022245
ORF1ab/nsp3	1189	T1189T	acC	acT	40	42	B.1.429	0.000941
ORF1ab/nsp3	1189	T1189T	acC	acA	2	42	B.1.429	0.000047
ORF1ab/nsp3	1189	T1189T	acC	acT	41	41	B.1.177.89	1
ORF1ab/nsp3	1189	T1189T	acC	acT	40	40	B.1.36	0.005836
ORF1ab/nsp3	1189	T1189T	acC	acT	39	39	AY.42	0.001569
ORF1ab/nsp3	1189	T1189T	acC	acT	35	39	AY.47	0.001089
ORF1ab/nsp3	1189	T1189T	acC	acA	4	39	AY.47	0.000124
ORF1ab/nsp3	1189	T1189I	aCC	aTT	39	39	B.1.177.10	0.034241
ORF1ab/nsp3	1189	T1189T	acC	acT	39	39	P.1.14	0.001864
ORF1ab/nsp3	1189	T1189T	acC	acT	38	38	AY.6	0.001563
ORF1ab/nsp3	1189	T1189I	aCc	aTc	37	37	AY.47	0.001151
ORF1ab/nsp3	1189	T1189T	acC	acT	37	37	B.1.177.37	1
ORF1ab/nsp3	1189	T1189T	acC	acT	36	36	AA.3	0.972973
ORF1ab/nsp3	1189	T1189T	acC	acT	33	33	B	0.004218
ORF1ab/nsp3	1189	T1189T	acC	acT	31	31	N.4	0.131915
ORF1ab/nsp3	1189	T1189T	acC	acT	31	31	V.2	1
ORF1ab/nsp3	1189	T1189I	aCc	aTc	30	30	AY.3	0.000298
ORF1ab/nsp3	1189	T1189T	acC	acT	30	30	B.1.160.20	0.267857
ORF1ab/nsp3	1189	T1189T	acC	acT	29	29	B.1.1.306	0.012714
ORF1ab/nsp3	1189	T1189T	acC	acT	23	27	AY.39	0.000568
ORF1ab/nsp3	1189	T1189T	acC	acA	4	27	AY.39	0.000099
ORF1ab/nsp3	1189	T1189I	aCc	aTc	27	27	B.1.1.519	0.001072
ORF1ab/nsp3	1189	T1189T	acC	acT	27	27	B.1.177.49	1
ORF1ab/nsp3	1189	T1189I	aCc	aTc	26	26	C.37	0.003018
ORF1ab/nsp3	1189	T1189T	acC	acT	26	26	C.40	0.722222
ORF1ab/nsp3	1189	T1189T	acC	acT	22	25	AY.39.1	0.000871
ORF1ab/nsp3	1189	T1189T	acC	acA	3	25	AY.39.1	0.000119
ORF1ab/nsp3	1189	T1189T	acC	acT	25	25	B.1.243	0.00174
ORF1ab/nsp3	1189	T1189T	acC	acT	24	24	B.1.1.39	0.012232
ORF1ab/nsp3	1189	T1189I	aCc	aTc	24	24	B.1.1.432	0.03038
ORF1ab/nsp3	1189	T1189T	acC	acT	24	24	B.1.177.66	1
ORF1ab/nsp3	1189	T1189I	aCc	aTc	24	24	B.1.427	0.001212
ORF1ab/nsp3	1189	T1189T	acC	acT	20	23	AY.29	0.000315
ORF1ab/nsp3	1189	T1189T	acC	acA	3	23	AY.29	0.000047
ORF1ab/nsp3	1189	T1189T	acC	acT	21	23	B.1.258.17	0.002183
ORF1ab/nsp3	1189	T1189T	acC	acA	2	23	B.1.258.17	0.000208
ORF1ab/nsp3	1189	T1189del	ACC	---	22	22	All	0.000004
ORF1ab/nsp3	1189	T1189T	acC	acT	22	22	B.1.177.61	0.956522
ORF1ab/nsp3	1189	T1189T	acC	acT	21	22	B.1.351	0.000624
ORF1ab/nsp3	1189	T1189T	acC	acA	1	22	B.1.351	0.00003
ORF1ab/nsp3	1189	T1189T	acC	acT	22	22	P.2	0.004106
ORF1ab/nsp3	1189	T1189I	aCc	aTc	20	20	A	0.00774
ORF1ab/nsp3	1189	T1189I	aCc	aTc	20	20	B.1.1.434	0.006971
ORF1ab/nsp3	1189	T1189I	aCc	aTc	19	20	B.1.221	0.00135
ORF1ab/nsp3	1189	T1189I	aCC	aTT	1	20	B.1.221	0.000071
ORF1ab/nsp3	1189	T1189I	aCc	aTc	20	20	B.1.628	0.007047
ORF1ab/nsp3	1189	T1189I	aCc	aTc	19	19	AY.5	0.000392
ORF1ab/nsp3	1189	T1189I	aCc	aTc	19	19	AY.98	0.001501
ORF1ab/nsp3	1189	T1189I	aCc	aTc	19	19	B.1.1.170	0.023691
ORF1ab/nsp3	1189	T1189T	acC	acT	19	19	B.1.1.434	0.006623
ORF1ab/nsp3	1189	T1189T	acC	acT	19	19	B.1.177.34	1
ORF1ab/nsp3	1189	T1189T	acC	acT	19	19	P.1.7	0.006066
ORF1ab/nsp3	1189	T1189I	aCc	aTc	19	19	P.1.7	0.006066
ORF1ab/nsp3	1189	T1189I	aCc	aTc	19	19	R.1	0.00171
ORF1ab/nsp3	1189	T1189T	acC	acT	17	17	AY.27	0.0011
ORF1ab/nsp3	1189	T1189I	aCc	aTc	17	17	B.1.378	0.116438
ORF1ab/nsp3	1189	T1189I	aCc	aTc	16	16	AY.111	0.00293
ORF1ab/nsp3	1189	T1189T	acC	acT	16	16	AY.113	0.002278
ORF1ab/nsp3	1189	T1189T	acC	acT	16	16	B.1.1.70	0.005457
ORF1ab/nsp3	1189	T1189I	aCc	aTc	16	16	B.1.311	0.004393
ORF1ab/nsp3	1189	T1189T	acC	acT	16	16	B.1.466.2	0.00626
ORF1ab/nsp3	1189	T1189I	aCc	aTc	15	15	AY.42	0.000603
ORF1ab/nsp3	1189	T1189T	acC	acT	15	15	AY.46.6	0.001083
ORF1ab/nsp3	1189	T1189I	aCc	aTc	14	14	AY.116	0.004015
ORF1ab/nsp3	1189	T1189I	aCc	aTc	14	14	AY.23	0.000976
ORF1ab/nsp3	1189	T1189I	aCc	aTc	14	14	AY.4.2.1	0.002086
ORF1ab/nsp3	1189	T1189T	acC	acT	14	14	B.1.1.371	0.145833
ORF1ab/nsp3	1189	T1189T	acC	acT	14	14	B.1.160.32	0.060086
ORF1ab/nsp3	1189	T1189T	acC	acT	14	14	B.1.177.29	0.933333
ORF1ab/nsp3	1189	T1189I	aCc	aTc	14	14	P.2	0.002613
ORF1ab/nsp3	1189	T1189I	aCc	aTc	13	13	AY.20	0.000505
ORF1ab/nsp3	1189	T1189I	aCc	aTc	13	13	AY.33	0.000868
ORF1ab/nsp3	1189	T1189T	acC	acT	13	13	AY.45	0.001582
ORF1ab/nsp3	1189	T1189I	aCc	aTc	13	13	B	0.001662
ORF1ab/nsp3	1189	T1189T	acC	acT	13	13	B.1.36.18	0.005462
ORF1ab/nsp3	1189	T1189I	aCc	aTc	13	13	P.1.14	0.000621
ORF1ab/nsp3	1189	T1189T	acC	acT	12	12	AD.2	0.002628
ORF1ab/nsp3	1189	T1189I	aCc	aTc	12	12	AY.118	0.000752
ORF1ab/nsp3	1189	T1189I	aCc	aTc	12	12	AY.45	0.00146
ORF1ab/nsp3	1189	T1189T	acC	acT	11	12	AY.46	0.001145
ORF1ab/nsp3	1189	T1189T	acC	acA	1	12	AY.46	0.000104
ORF1ab/nsp3	1189	T1189T	acC	acT	12	12	AY.46.2	0.007624
ORF1ab/nsp3	1189	T1189T	acC	acT	10	12	AY.61	0.001048
ORF1ab/nsp3	1189	T1189T	acC	acA	2	12	AY.61	0.00021
ORF1ab/nsp3	1189	T1189I	aCc	aTc	12	12	AY.9	0.000811
ORF1ab/nsp3	1189	T1189I	aCC	aTT	11	12	B.1.177.15	0.00694
ORF1ab/nsp3	1189	T1189I	aCc	aTc	1	12	B.1.177.15	0.000631
ORF1ab/nsp3	1189	T1189T	acC	acT	10	11	AY.23	0.000697
ORF1ab/nsp3	1189	T1189T	acC	acA	1	11	AY.23	0.00007
ORF1ab/nsp3	1189	T1189T	acC	acT	11	11	AY.85	0.004699
ORF1ab/nsp3	1189	T1189T	acC	acT	11	11	B.1.1.170	0.013716
ORF1ab/nsp3	1189	T1189T	acC	acT	11	11	B.1.177.31	0.126437
ORF1ab/nsp3	1189	T1189T	acC	acT	11	11	B.1.177.64	1
ORF1ab/nsp3	1189	T1189T	acC	acT	11	11	B.1.36.39	0.02439
ORF1ab/nsp3	1189	T1189S	aCc	aGc	6	10	All	0.000001
ORF1ab/nsp3	1189	T1189S	Acc	Tcc	4	10	All	0.000001
ORF1ab/nsp3	1189	T1189T	acC	acT	10	10	AY.117	0.000845
ORF1ab/nsp3	1189	T1189T	acC	acT	10	10	AY.7.1	0.001127
ORF1ab/nsp3	1189	T1189I	aCc	aTc	10	10	AZ.2	0.00821
ORF1ab/nsp3	1189	T1189T	acC	acT	10	10	B.1.1.161	0.035336
ORF1ab/nsp3	1189	T1189I	aCc	aTc	10	10	B.1.1.297	0.022371
ORF1ab/nsp3	1189	T1189T	acC	acT	10	10	B.1.218	0.051546
ORF1ab/nsp3	1189	T1189I	aCc	aTc	10	10	B.1.234	0.001319
ORF1ab/nsp3	1189	T1189A	Acc	Gcc	10	10	B.1.349	0.007148
ORF1ab/nsp3	1189	T1189T	acC	acT	10	10	B.1.416.1	0.015625
ORF1ab/nsp3	1189	T1189I	aCc	aTc	10	10	B.1.466.2	0.003912
ORF1ab/nsp3	1189	T1189T	acC	acT	10	10	B.1.588	0.009099
ORF1ab/nsp3	1189	T1189T	acC	acT	9	9	AY.20	0.00035
ORF1ab/nsp3	1189	T1189T	acC	acT	8	9	AY.26	0.000226
ORF1ab/nsp3	1189	T1189T	acC	acA	1	9	AY.26	0.000028
ORF1ab/nsp3	1189	T1189I	aCc	aTc	9	9	AY.39.1	0.000357
ORF1ab/nsp3	1189	T1189I	aCc	aTc	9	9	AY.46	0.000937
ORF1ab/nsp3	1189	T1189T	acC	acT	9	9	AY.99.2	0.000829
ORF1ab/nsp3	1189	T1189I	aCc	aTc	9	9	B.1.1.1	0.00294
ORF1ab/nsp3	1189	T1189T	acC	acT	9	9	B.1.1.214	0.000499
ORF1ab/nsp3	1189	T1189T	acC	acT	9	9	B.1.1.33	0.003788
ORF1ab/nsp3	1189	T1189N	aCc	aAc	9	9	B.1.1.7	0.000008
ORF1ab/nsp3	1189	T1189I	aCC	aTT	8	9	B.1.177.58	0.010652
ORF1ab/nsp3	1189	T1189I	aCc	aTc	1	9	B.1.177.58	0.001332
ORF1ab/nsp3	1189	T1189I	aCC	aTT	8	9	B.1.177.7	0.001319
ORF1ab/nsp3	1189	T1189I	aCc	aTc	1	9	B.1.177.7	0.000165
ORF1ab/nsp3	1189	T1189I	aCC	aTT	9	9	B.1.177.72	0.030508
ORF1ab/nsp3	1189	T1189T	acC	acT	9	9	B.1.214.2	0.005396
ORF1ab/nsp3	1189	T1189T	acC	acT	9	9	B.1.369	0.002567
ORF1ab/nsp3	1189	T1189T	acC	acT	9	9	B.1.425	0.026946
ORF1ab/nsp3	1189	T1189I	aCc	aTc	8	9	B.1.596	0.000697
ORF1ab/nsp3	1189	T1189I	aCC	aTT	1	9	B.1.596	0.000087
ORF1ab/nsp3	1189	T1189T	acC	acT	9	9	C.37	0.001045
ORF1ab/nsp3	1189	T1189T	acC	acT	9	9	L.1	0.017143
ORF1ab/nsp3	1189	T1189T	acC	acT	9	9	P.1.10	0.002425
ORF1ab/nsp3	1189	T1189T	acC	acT	9	9	Q.4	0.004093
ORF1ab/nsp3	1189	T1189T	acC	acT	6	8	AY.100	0.000276
ORF1ab/nsp3	1189	T1189T	acC	acA	2	8	AY.100	0.000092
ORF1ab/nsp3	1189	T1189T	acC	acT	8	8	AY.109	0.005917
ORF1ab/nsp3	1189	T1189I	aCc	aTc	8	8	AY.117	0.000676
ORF1ab/nsp3	1189	T1189T	acC	acT	8	8	AY.119	0.000282
ORF1ab/nsp3	1189	T1189I	aCc	aTc	8	8	AY.27	0.000518
ORF1ab/nsp3	1189	T1189I	aCc	aTc	7	8	AY.29	0.00011
ORF1ab/nsp3	1189	T1189I	aCC	aTT	1	8	AY.29	0.000016
ORF1ab/nsp3	1189	T1189T	acC	acT	8	8	AY.4.5	0.00086
ORF1ab/nsp3	1189	T1189I	aCc	aTc	8	8	AY.6	0.000329
ORF1ab/nsp3	1189	T1189T	acC	acT	8	8	AY.69	0.001493
ORF1ab/nsp3	1189	T1189T	acC	acT	8	8	B.1.222	0.013536
ORF1ab/nsp3	1189	T1189T	acC	acT	8	8	B.1.240	0.001725
ORF1ab/nsp3	1189	T1189I	aCc	aTc	8	8	B.1.441	0.076923
ORF1ab/nsp3	1189	T1189A	Acc	Gcc	8	8	B.1.617.2	0.00003
ORF1ab/nsp3	1189	T1189N	aCc	aAc	8	8	B.1.621	0.000708
ORF1ab/nsp3	1189	T1189T	acC	acT	8	8	B.1.621	0.000708
ORF1ab/nsp3	1189	T1189T	acC	acT	7	7	A.23.1	0.00493
ORF1ab/nsp3	1189	T1189I	aCc	aTc	7	7	AY.120	0.00026
ORF1ab/nsp3	1189	T1189T	acC	acT	6	7	AY.120	0.000223
ORF1ab/nsp3	1189	T1189T	acC	acA	1	7	AY.120	0.000037
ORF1ab/nsp3	1189	T1189I	aCc	aTc	7	7	AY.16	0.002658
ORF1ab/nsp3	1189	T1189A	Acc	Gcc	7	7	AY.3	0.00007
ORF1ab/nsp3	1189	T1189I	aCc	aTc	7	7	AY.53	0.002013
ORF1ab/nsp3	1189	T1189A	Acc	Gcc	7	7	AY.90	0.004791
ORF1ab/nsp3	1189	T1189T	acC	acT	6	7	AY.98	0.000474
ORF1ab/nsp3	1189	T1189T	acC	acA	1	7	AY.98	0.000079
ORF1ab/nsp3	1189	T1189I	aCc	aTc	7	7	AY.98.1	0.000339
ORF1ab/nsp3	1189	T1189T	acC	acT	7	7	B.1.1.1	0.002287
ORF1ab/nsp3	1189	T1189I	aCc	aTc	7	7	B.1.1.216	0.006233
ORF1ab/nsp3	1189	T1189T	acC	acT	7	7	B.1.1.25	0.00398
ORF1ab/nsp3	1189	T1189T	acC	acT	7	7	B.1.1.28	0.002179
ORF1ab/nsp3	1189	T1189I	aCc	aTc	7	7	B.1.1.284	0.000752
ORF1ab/nsp3	1189	T1189T	acC	acT	7	7	B.1.1.385	0.03125
ORF1ab/nsp3	1189	T1189A	Acc	Gcc	7	7	B.1.1.7	0.000006
ORF1ab/nsp3	1189	T1189N	aCC	aAT	7	7	B.1.177	0.000092
ORF1ab/nsp3	1189	T1189T	acC	acA	6	7	B.1.311	0.001647
ORF1ab/nsp3	1189	T1189T	acC	acT	1	7	B.1.311	0.000275
ORF1ab/nsp3	1189	T1189I	aCc	aTc	7	7	B.1.351	0.000208
ORF1ab/nsp3	1189	T1189I	aCc	aTc	7	7	B.1.36.8	0.007
ORF1ab/nsp3	1189	T1189T	acC	acT	7	7	B.1.617.1	0.000903
ORF1ab/nsp3	1189	T1189T	acC	acT	7	7	B.4.1	0.132075
ORF1ab/nsp3	1189	T1189I	aCc	aTc	6	6	AY.100	0.000276
ORF1ab/nsp3	1189	T1189T	acC	acT	6	6	AY.116	0.001721
ORF1ab/nsp3	1189	T1189I	aCc	aTc	6	6	AY.12	0.001896
ORF1ab/nsp3	1189	T1189T	acC	acT	5	6	AY.33	0.000334
ORF1ab/nsp3	1189	T1189T	acC	acA	1	6	AY.33	0.000067
ORF1ab/nsp3	1189	T1189T	acC	acT	6	6	AY.36	0.000889
ORF1ab/nsp3	1189	T1189I	aCc	aTc	6	6	AY.46.6	0.000433
ORF1ab/nsp3	1189	T1189T	acC	acT	6	6	AY.49	0.019169
ORF1ab/nsp3	1189	T1189I	aCc	aTc	6	6	AY.61	0.000629
ORF1ab/nsp3	1189	T1189I	aCc	aTc	6	6	AY.75	0.000336
ORF1ab/nsp3	1189	T1189T	acC	acT	6	6	AY.9.2	0.00022
ORF1ab/nsp3	1189	T1189T	acC	acT	6	6	B.1.1.10	0.006689
ORF1ab/nsp3	1189	T1189I	aCc	aTc	6	6	B.1.1.26	0.031414
ORF1ab/nsp3	1189	T1189I	aCc	aTc	5	6	B.1.1.372	0.003444
ORF1ab/nsp3	1189	T1189I	aCC	aTT	1	6	B.1.1.372	0.000689
ORF1ab/nsp3	1189	T1189I	aCC	aTT	5	6	B.1.177.43	0.007386
ORF1ab/nsp3	1189	T1189I	aCc	aTc	1	6	B.1.177.43	0.001477
ORF1ab/nsp3	1189	T1189T	acC	acT	6	6	B.1.241	0.00487
ORF1ab/nsp3	1189	T1189I	aCc	aTc	6	6	B.1.369	0.001711
ORF1ab/nsp3	1189	T1189T	acC	acT	6	6	B.1.391	0.006764
ORF1ab/nsp3	1189	T1189T	acC	acT	6	6	B.1.503	0.014925
ORF1ab/nsp3	1189	T1189N	aCc	aAc	6	6	B.1.617.2	0.000023
ORF1ab/nsp3	1189	T1189T	acC	acT	6	6	B.1.627	0.012121
ORF1ab/nsp3	1189	T1189I	aCc	aTc	6	6	N.5	0.010601
ORF1ab/nsp3	1189	T1189T	acC	acT	6	6	Q.1	0.000758
ORF1ab/nsp3	1189	T1189T	acC	acT	4	6	Q.8	0.00066
ORF1ab/nsp3	1189	T1189T	acC	acA	2	6	Q.8	0.00033
ORF1ab/nsp3	1189	T1189T	acC	acT	5	5	AY.114	0.001156
ORF1ab/nsp3	1189	T1189I	aCc	aTc	5	5	AY.119	0.000177
ORF1ab/nsp3	1189	T1189T	acC	acT	5	5	AY.121	0.000677
ORF1ab/nsp3	1189	T1189N	aCc	aAc	5	5	AY.3	0.00005
ORF1ab/nsp3	1189	T1189T	acC	acA	5	5	AY.35	0.001165
ORF1ab/nsp3	1189	T1189I	aCc	aTc	5	5	AY.36	0.000741
ORF1ab/nsp3	1189	T1189T	acC	acT	5	5	AY.79	0.006053
ORF1ab/nsp3	1189	T1189I	aCc	aTc	5	5	AY.99.2	0.000461
ORF1ab/nsp3	1189	T1189T	acC	acT	5	5	B.1.1.315	0.042373
ORF1ab/nsp3	1189	T1189I	aCc	aTc	5	5	B.1.1.318	0.001509
ORF1ab/nsp3	1189	T1189I	aCc	aTc	5	5	B.1.1.33	0.002104
ORF1ab/nsp3	1189	T1189I	aCc	aTc	5	5	B.1.1.39	0.002548
ORF1ab/nsp3	1189	T1189I	aCC	aTT	5	5	B.1.177.44	0.002595
ORF1ab/nsp3	1189	T1189T	acC	acT	5	5	B.1.221.2	0.02008
ORF1ab/nsp3	1189	T1189T	acC	acT	5	5	B.1.234	0.00066
ORF1ab/nsp3	1189	T1189I	aCc	aTc	5	5	B.1.258	0.000333
ORF1ab/nsp3	1189	T1189I	aCc	aTc	5	5	B.1.36.29	0.002587
ORF1ab/nsp3	1189	T1189T	acC	acT	5	5	B.1.577	0.003436
ORF1ab/nsp3	1189	T1189T	acC	acT	5	5	B.1.609	0.002397
ORF1ab/nsp3	1189	T1189T	acC	acT	5	5	C.1	0.011962
ORF1ab/nsp3	1189	T1189T	acC	acT	5	5	D.2	0.000375
ORF1ab/nsp3	1189	T1189T	acC	acT	4	5	P.1.15	0.000929
ORF1ab/nsp3	1189	T1189T	acC	acA	1	5	P.1.15	0.000232
ORF1ab/nsp3	1189	T1189T	acC	acT	5	5	Q.7	0.005556
ORF1ab/nsp3	1189	T1189T	acC	acT	4	4	A.1	0.001127
ORF1ab/nsp3	1189	T1189N	aCc	aAc	3	4	AY.103	0.000019
ORF1ab/nsp3	1189	T1189N	aCC	aAT	1	4	AY.103	0.000006
ORF1ab/nsp3	1189	T1189T	acC	acT	3	4	AY.106	0.001005
ORF1ab/nsp3	1189	T1189T	acC	acA	1	4	AY.106	0.000335
ORF1ab/nsp3	1189	T1189T	acC	acT	4	4	AY.110	0.000451
ORF1ab/nsp3	1189	T1189I	aCc	aTc	4	4	AY.121	0.000541
ORF1ab/nsp3	1189	T1189I	aCc	aTc	4	4	AY.3.1	0.000341
ORF1ab/nsp3	1189	T1189T	acC	acT	4	4	AY.4.2	0.000087
ORF1ab/nsp3	1189	T1189A	Acc	Gcc	4	4	AY.44	0.000024
ORF1ab/nsp3	1189	T1189A	Acc	Gcc	4	4	AY.46.4	0.000658
ORF1ab/nsp3	1189	T1189I	aCc	aTc	4	4	AY.55	0.00367
ORF1ab/nsp3	1189	T1189I	aCc	aTc	4	4	AY.59	0.002119
ORF1ab/nsp3	1189	T1189A	Acc	Gcc	4	4	AY.75	0.000224
ORF1ab/nsp3	1189	T1189T	acC	acT	4	4	AY.75	0.000224
ORF1ab/nsp3	1189	T1189T	acC	acA	2	4	AY.9	0.000135
ORF1ab/nsp3	1189	T1189T	acC	acT	2	4	AY.9	0.000135
ORF1ab/nsp3	1189	T1189I	aCc	aTc	4	4	AY.9.2	0.000147
ORF1ab/nsp3	1189	T1189T	acC	acT	4	4	AY.98.1	0.000194
ORF1ab/nsp3	1189	T1189T	acC	acT	4	4	B.1.1.189	0.006051
ORF1ab/nsp3	1189	T1189T	acC	acT	4	4	B.1.1.216	0.003562
ORF1ab/nsp3	1189	T1189T	acC	acT	4	4	B.1.1.253	0.010025
ORF1ab/nsp3	1189	T1189I	aCc	aTc	4	4	B.1.1.306	0.001754
ORF1ab/nsp3	1189	T1189I	aCc	aTc	4	4	B.1.1.309	0.023392
ORF1ab/nsp3	1189	T1189del	ACC	---	4	4	B.1.1.7	0.000004
ORF1ab/nsp3	1189	T1189I	aCC	aTT	4	4	B.1.177.4	0.000844
ORF1ab/nsp3	1189	T1189N	aCc	aAc	4	4	B.1.2	0.000035
ORF1ab/nsp3	1189	T1189T	acC	acT	4	4	B.1.236	0.008214
ORF1ab/nsp3	1189	T1189T	acC	acT	4	4	B.1.258.11	0.001585
ORF1ab/nsp3	1189	T1189T	acC	acT	4	4	B.1.324	0.006421
ORF1ab/nsp3	1189	T1189I	aCc	aTc	4	4	B.1.36	0.000584
ORF1ab/nsp3	1189	T1189S	aCc	aGc	4	4	B.1.36.18	0.001681
ORF1ab/nsp3	1189	T1189T	acC	acT	4	4	B.1.36.7	0.016
ORF1ab/nsp3	1189	T1189I	aCc	aTc	3	4	B.1.416	0.003807
ORF1ab/nsp3	1189	T1189I	aCC	aTT	1	4	B.1.416	0.001269
ORF1ab/nsp3	1189	T1189T	acC	acT	4	4	B.1.509	0.003463
ORF1ab/nsp3	1189	T1189T	acC	acT	4	4	B.1.538	0.032258
ORF1ab/nsp3	1189	T1189T	acC	acT	4	4	B.1.561	0.001588
ORF1ab/nsp3	1189	T1189I	aCc	aTc	4	4	B.1.575.1	0.009756
ORF1ab/nsp3	1189	T1189T	acC	acT	4	4	B.1.595	0.001044
ORF1ab/nsp3	1189	T1189T	acC	acT	4	4	B.1.621.1	0.002023
ORF1ab/nsp3	1189	T1189T	acC	acT	4	4	B.1.9.4	0.02454
ORF1ab/nsp3	1189	T1189I	aCc	aTc	3	4	B.1.9.4	0.018405
ORF1ab/nsp3	1189	T1189I	aCC	aTT	1	4	B.1.9.4	0.006135
ORF1ab/nsp3	1189	T1189I	aCc	aTc	4	4	P.6	0.012579
ORF1ab/nsp3	1189	T1189I	aCc	aTc	3	3	A.1	0.000846
ORF1ab/nsp3	1189	T1189del2	ACc	--c	3	3	All	0.000001
ORF1ab/nsp3	1189	T1189T	acC	acT	3	3	AP.1	0.004505
ORF1ab/nsp3	1189	T1189T	acC	acT	3	3	AY.101	0.001471
ORF1ab/nsp3	1189	T1189I	aCc	aTc	3	3	AY.107	0.001398
ORF1ab/nsp3	1189	T1189I	aCc	aTc	3	3	AY.110	0.000338
ORF1ab/nsp3	1189	T1189T	acC	acT	3	3	AY.16	0.001139
ORF1ab/nsp3	1189	T1189T	acC	acT	2	3	AY.16.1	0.00094
ORF1ab/nsp3	1189	T1189T	acC	acA	1	3	AY.16.1	0.00047
ORF1ab/nsp3	1189	T1189T	acC	acT	3	3	AY.4.2.1	0.000447
ORF1ab/nsp3	1189	T1189T	acC	acT	3	3	AY.4.4	0.001227
ORF1ab/nsp3	1189	T1189N	aCc	aAc	3	3	AY.43	0.000013
ORF1ab/nsp3	1189	T1189T	acC	acT	3	3	AY.54	0.000286
ORF1ab/nsp3	1189	T1189I	aCc	aTc	3	3	AY.63	0.001161
ORF1ab/nsp3	1189	T1189T	acC	acT	3	3	AY.74	0.000347
ORF1ab/nsp3	1189	T1189T	acC	acT	3	3	AY.78	0.004622
ORF1ab/nsp3	1189	T1189T	acC	acT	3	3	AY.83	0.005172
ORF1ab/nsp3	1189	T1189I	aCc	aTc	3	3	AY.99.1	0.004658
ORF1ab/nsp3	1189	T1189I	aCc	aTc	3	3	B.1.1.189	0.004539
ORF1ab/nsp3	1189	T1189T	acC	acT	3	3	B.1.1.222	0.000612
ORF1ab/nsp3	1189	T1189I	aCc	aTc	3	3	B.1.1.253	0.007519
ORF1ab/nsp3	1189	T1189I	aCc	aTc	3	3	B.1.1.294	0.003797
ORF1ab/nsp3	1189	T1189T	acC	acT	3	3	B.1.1.372	0.002066
ORF1ab/nsp3	1189	T1189I	aCc	aTc	3	3	B.1.1.397	0.006757
ORF1ab/nsp3	1189	T1189T	acC	acT	3	3	B.1.1.398	0.009677
ORF1ab/nsp3	1189	T1189T	acC	acT	3	3	B.1.1.416	0.002715
ORF1ab/nsp3	1189	T1189T	acC	acT	3	3	B.1.1.47	0.016043
ORF1ab/nsp3	1189	T1189A	Acc	Gcc	3	3	B.1.1.519	0.000119
ORF1ab/nsp3	1189	T1189T	acC	acT	3	3	B.1.1.521	0.016043
ORF1ab/nsp3	1189	T1189I	aCc	aTc	3	3	B.1.1.526	0.010638
ORF1ab/nsp3	1189	T1189I	aCc	aTc	3	3	B.1.1.63	0.001157
ORF1ab/nsp3	1189	T1189I	aCc	aTc	3	3	B.1.157	0.008955
ORF1ab/nsp3	1189	T1189T	acC	acT	3	3	B.1.160.16	0.002788
ORF1ab/nsp3	1189	T1189I	aCC	aTT	3	3	B.1.177.46	0.002755
ORF1ab/nsp3	1189	T1189I	aCC	aTT	3	3	B.1.177.81	0.000568
ORF1ab/nsp3	1189	T1189T	acC	acT	2	3	B.1.210	0.004264
ORF1ab/nsp3	1189	T1189T	acC	acA	1	3	B.1.210	0.002132
ORF1ab/nsp3	1189	T1189I	aCc	aTc	3	3	B.1.221.1	0.008721
ORF1ab/nsp3	1189	T1189I	aCC	aTT	2	3	B.1.258.17	0.000208
ORF1ab/nsp3	1189	T1189I	aCc	aTc	1	3	B.1.258.17	0.000104
ORF1ab/nsp3	1189	T1189T	acC	acT	3	3	B.1.258.7	0.005736
ORF1ab/nsp3	1189	T1189T	acC	acT	3	3	B.1.260	0.010033
ORF1ab/nsp3	1189	T1189A	Acc	Gcc	3	3	B.1.351	0.000089
ORF1ab/nsp3	1189	T1189T	acC	acT	3	3	B.1.362	0.004622
ORF1ab/nsp3	1189	T1189T	acC	acT	3	3	B.1.375	0.002459
ORF1ab/nsp3	1189	T1189T	acC	acT	3	3	B.1.389	0.003006
ORF1ab/nsp3	1189	T1189T	acC	acT	2	3	B.1.438.1	0.000215
ORF1ab/nsp3	1189	T1189T	acC	acA	1	3	B.1.438.1	0.000107
ORF1ab/nsp3	1189	T1189T	acC	acT	3	3	B.1.541	0.013274
ORF1ab/nsp3	1189	T1189T	acC	acT	3	3	B.1.575	0.00091
ORF1ab/nsp3	1189	T1189T	acC	acT	3	3	B.1.576	0.00272
ORF1ab/nsp3	1189	T1189I	aCc	aTc	3	3	B.1.617.1	0.000387
ORF1ab/nsp3	1189	T1189I	aCc	aTc	3	3	B.40	0.001093
ORF1ab/nsp3	1189	T1189T	acC	acT	2	3	C.36.3	0.001134
ORF1ab/nsp3	1189	T1189T	acC	acA	1	3	C.36.3	0.000567
ORF1ab/nsp3	1189	T1189T	acC	acT	2	2	A	0.000774
ORF1ab/nsp3	1189	T1189I	aCc	aTc	2	2	A.2.5.1	0.009615
ORF1ab/nsp3	1189	T1189del1	aCc	a-c	2	2	All	0
ORF1ab/nsp3	1189	T1189T	acC	acT	2	2	AU.2	0.004843
ORF1ab/nsp3	1189	T1189I	aCc	aTc	2	2	AY.10	0.00106
ORF1ab/nsp3	1189	T1189T	acC	acT	2	2	AY.111	0.000366
ORF1ab/nsp3	1189	T1189T	acC	acT	2	2	AY.116.1	0.000623
ORF1ab/nsp3	1189	T1189T	acC	acT	2	2	AY.118	0.000125
ORF1ab/nsp3	1189	T1189T	acC	acT	2	2	AY.12	0.000632
ORF1ab/nsp3	1189	T1189T	acC	acT	2	2	AY.120.2	0.002571
ORF1ab/nsp3	1189	T1189I	aCc	aTc	2	2	AY.2	0.000712
ORF1ab/nsp3	1189	T1189N	aCc	aAc	2	2	AY.20	0.000078
ORF1ab/nsp3	1189	T1189T	acC	acT	2	2	AY.22	0.004184
ORF1ab/nsp3	1189	T1189A	Acc	Gcc	2	2	AY.25	0.000012
ORF1ab/nsp3	1189	T1189del	ACC	---	2	2	AY.25	0.000012
ORF1ab/nsp3	1189	T1189I	aCc	aTc	2	2	AY.28	0.003781
ORF1ab/nsp3	1189	T1189I	aCc	aTc	2	2	AY.30	0.000791
ORF1ab/nsp3	1189	T1189A	Acc	Gcc	2	2	AY.33	0.000134
ORF1ab/nsp3	1189	T1189T	acC	acT	2	2	AY.34	0.000194
ORF1ab/nsp3	1189	T1189I	aCc	aTc	2	2	AY.34.1	0.00102
ORF1ab/nsp3	1189	T1189T	acC	acT	2	2	AY.38	0.000999
ORF1ab/nsp3	1189	T1189I	aCc	aTc	2	2	AY.4.5	0.000215
ORF1ab/nsp3	1189	T1189T	acC	acT	2	2	AY.40	0.001929
ORF1ab/nsp3	1189	T1189I	aCc	aTc	2	2	AY.46.2	0.001271
ORF1ab/nsp3	1189	T1189I	aCc	aTc	2	2	AY.52	0.001629
ORF1ab/nsp3	1189	T1189I	aCc	aTc	2	2	AY.60	0.001876
ORF1ab/nsp3	1189	T1189T	acC	acT	2	2	AY.63	0.000774
ORF1ab/nsp3	1189	T1189I	aCc	aTc	2	2	AY.65	0.001066
ORF1ab/nsp3	1189	T1189I	aCc	aTc	2	2	AY.71	0.00095
ORF1ab/nsp3	1189	T1189T	acC	acT	2	2	AY.91	0.001461
ORF1ab/nsp3	1189	T1189T	acC	acT	2	2	AY.92	0.000575
ORF1ab/nsp3	1189	T1189I	aCc	aTc	2	2	AY.92	0.000575
ORF1ab/nsp3	1189	T1189T	acC	acT	2	2	AY.93	0.000546
ORF1ab/nsp3	1189	T1189N	aCc	aAc	2	2	B.1	0.000018
ORF1ab/nsp3	1189	T1189del	ACC	---	2	2	B.1	0.000018
ORF1ab/nsp3	1189	T1189I	aCc	aTc	2	2	B.1.1.10	0.00223
ORF1ab/nsp3	1189	T1189T	acC	acT	2	2	B.1.1.198	0.002937
ORF1ab/nsp3	1189	T1189T	acC	acT	2	2	B.1.1.204	0.006079
ORF1ab/nsp3	1189	T1189I	aCc	aTc	2	2	B.1.1.263	0.003115
ORF1ab/nsp3	1189	T1189I	aCc	aTc	2	2	B.1.1.28	0.000622
ORF1ab/nsp3	1189	T1189del	ACC	---	2	2	B.1.1.315	0.016949
ORF1ab/nsp3	1189	T1189A	Acc	Gcc	2	2	B.1.1.33	0.000842
ORF1ab/nsp3	1189	T1189I	aCc	aTc	2	2	B.1.1.351	0.005587
ORF1ab/nsp3	1189	T1189T	acC	acT	2	2	B.1.1.356	0.017094
ORF1ab/nsp3	1189	T1189I	aCc	aTc	2	2	B.1.1.374	0.004751
ORF1ab/nsp3	1189	T1189T	acC	acT	2	2	B.1.1.409	0.005666
ORF1ab/nsp3	1189	T1189I	aCc	aTc	2	2	B.1.1.429	0.009217
ORF1ab/nsp3	1189	T1189I	aCc	aTc	2	2	B.1.1.47	0.010695
ORF1ab/nsp3	1189	T1189T	acC	acT	2	2	B.1.1.523	0.003125
ORF1ab/nsp3	1189	T1189T	acC	acT	2	2	B.1.160.10	0.016129
ORF1ab/nsp3	1189	T1189T	acC	acT	2	2	B.1.160.14	0.004237
ORF1ab/nsp3	1189	T1189S	Acc	Tcc	2	2	B.1.160.16	0.001859
ORF1ab/nsp3	1189	T1189T	acC	acT	2	2	B.1.160.9	0.014388
ORF1ab/nsp3	1189	T1189I	aCC	aTT	2	2	B.1.177.21	0.000153
ORF1ab/nsp3	1189	T1189I	aCC	aTT	2	2	B.1.177.65	0.001331
ORF1ab/nsp3	1189	T1189I	aCC	aTT	2	2	B.1.177.82	0.000955
ORF1ab/nsp3	1189	T1189I	aCC	aTT	2	2	B.1.177.86	0.000367
ORF1ab/nsp3	1189	T1189I	aCc	aTc	2	2	B.1.22	0.002635
ORF1ab/nsp3	1189	T1189N	aCc	aAc	2	2	B.1.221	0.000142
ORF1ab/nsp3	1189	T1189T	acC	acT	2	2	B.1.221.1	0.005814
ORF1ab/nsp3	1189	T1189T	acC	acT	2	2	B.1.223	0.005556
ORF1ab/nsp3	1189	T1189I	aCc	aTc	2	2	B.1.239	0.002442
ORF1ab/nsp3	1189	T1189I	aCc	aTc	2	2	B.1.315	0.012121
ORF1ab/nsp3	1189	T1189T	acC	acT	2	2	B.1.329	0.001215
ORF1ab/nsp3	1189	T1189I	aCc	aTc	2	2	B.1.349	0.00143
ORF1ab/nsp3	1189	T1189T	acC	acT	2	2	B.1.351.5	0.001199
ORF1ab/nsp3	1189	T1189I	aCc	aTc	2	2	B.1.36.19	0.018519
ORF1ab/nsp3	1189	T1189T	acC	acT	2	2	B.1.36.27	0.001527
ORF1ab/nsp3	1189	T1189T	acC	acT	1	2	B.1.36.35	0.002604
ORF1ab/nsp3	1189	T1189T	acC	acA	1	2	B.1.36.35	0.002604
ORF1ab/nsp3	1189	T1189T	acC	acT	2	2	B.1.367	0.001585
ORF1ab/nsp3	1189	T1189I	aCc	aTc	1	2	B.1.389	0.001002
ORF1ab/nsp3	1189	T1189I	aCC	aTT	1	2	B.1.389	0.001002
ORF1ab/nsp3	1189	T1189I	aCc	aTc	2	2	B.1.396	0.001411
ORF1ab/nsp3	1189	T1189T	acC	acT	2	2	B.1.397	0.009709
ORF1ab/nsp3	1189	T1189T	acC	acT	2	2	B.1.416	0.002538
ORF1ab/nsp3	1189	T1189T	acC	acT	2	2	B.1.424	0.016129
ORF1ab/nsp3	1189	T1189T	acC	acT	2	2	B.1.462	0.014493
ORF1ab/nsp3	1189	T1189I	aCc	aTc	2	2	B.1.462	0.014493
ORF1ab/nsp3	1189	T1189T	acC	acT	2	2	B.1.470	0.002809
ORF1ab/nsp3	1189	T1189T	acC	acT	2	2	B.1.473	0.038462
ORF1ab/nsp3	1189	T1189T	acC	acT	2	2	B.1.530	0.014286
ORF1ab/nsp3	1189	T1189T	acC	acT	2	2	B.1.533	0.019231
ORF1ab/nsp3	1189	T1189I	aCc	aTc	2	2	B.1.540	0.019417
ORF1ab/nsp3	1189	T1189I	aCc	aTc	2	2	B.1.551	0.002581
ORF1ab/nsp3	1189	T1189T	acC	acT	2	2	B.1.564.1	0.003155
ORF1ab/nsp3	1189	T1189T	acC	acT	2	2	B.1.580	0.00813
ORF1ab/nsp3	1189	T1189T	acC	acT	2	2	B.1.582	0.000981
ORF1ab/nsp3	1189	T1189I	aCc	aTc	2	2	B.1.619.1	0.001283
ORF1ab/nsp3	1189	T1189T	acC	acT	2	2	B.1.619.1	0.001283
ORF1ab/nsp3	1189	T1189I	aCc	aTc	2	2	B.1.623	0.001073
ORF1ab/nsp3	1189	T1189T	acC	acT	2	2	B.1.628	0.000705
ORF1ab/nsp3	1189	T1189I	aCc	aTc	2	2	B.1.637	0.000146
ORF1ab/nsp3	1189	T1189N	aCc	aAc	2	2	B.1.637	0.000146
ORF1ab/nsp3	1189	T1189T	acC	acT	2	2	B.1.91	0.004149
ORF1ab/nsp3	1189	T1189I	aCc	aTc	2	2	B.23	0.005848
ORF1ab/nsp3	1189	T1189I	aCc	aTc	2	2	C.16	0.002121
ORF1ab/nsp3	1189	T1189T	acC	acT	2	2	C.30	0.003454
ORF1ab/nsp3	1189	T1189T	acC	acT	2	2	C.36	0.001821
ORF1ab/nsp3	1189	T1189I	aCc	aTc	2	2	D.2	0.00015
ORF1ab/nsp3	1189	T1189T	acC	acT	2	2	K.1	0.047619
ORF1ab/nsp3	1189	T1189I	aCc	aTc	2	2	P.1.1	0.000635
ORF1ab/nsp3	1189	T1189I	aCc	aTc	2	2	P.1.12	0.000968
ORF1ab/nsp3	1189	T1189T	acC	acT	2	2	P.1.12	0.000968
ORF1ab/nsp3	1189	T1189I	aCc	aTc	2	2	P.1.15	0.000465
ORF1ab/nsp3	1189	T1189I	aCc	aTc	2	2	P.1.16	0.000748
ORF1ab/nsp3	1189	T1189T	acC	acT	2	2	P.1.17	0.000324
ORF1ab/nsp3	1189	T1189T	acC	acT	2	2	P.7	0.008734
ORF1ab/nsp3	1189	T1189I	aCc	aTc	2	2	Q.8	0.00033
ORF1ab/nsp3	1189	T1189T	acC	acT	2	2	R.1	0.00018
ORF1ab/nsp3	1189	T1189I	aCc	aTc	1	1	A.2	0.000662
ORF1ab/nsp3	1189	T1189T	acC	acT	1	1	A.2	0.000662
ORF1ab/nsp3	1189	T1189S	Acc	Tcc	1	1	A.2.4	0.003367
ORF1ab/nsp3	1189	T1189T	acC	acT	1	1	A.2.5	0.000499
ORF1ab/nsp3	1189	T1189A	Acc	Gcc	1	1	A.2.5	0.000499
ORF1ab/nsp3	1189	T1189I	aCc	aTc	1	1	A.2.5.3	0.010309
ORF1ab/nsp3	1189	T1189I	aCc	aTc	1	1	AE.8	0.000489
ORF1ab/nsp3	1189	T1189T	acC	acT	1	1	AH.3	0.003802
ORF1ab/nsp3	1189	T1189X	ACC	TAG	1	1	All	0
ORF1ab/nsp3	1189	T1189M	aCC	aTG	1	1	All	0
ORF1ab/nsp3	1189	T1189V	ACc	GTc	1	1	All	0
ORF1ab/nsp3	1189	T1189H	ACc	CAc	1	1	All	0
ORF1ab/nsp3	1189	T1189P	Acc	Ccc	1	1	All	0
ORF1ab/nsp3	1189	T1189T	acC	acT	1	1	AM.4	0.003571
ORF1ab/nsp3	1189	T1189T	acC	acT	1	1	AN.1	0.02
ORF1ab/nsp3	1189	T1189I	aCc	aTc	1	1	AU.1	0.001266
ORF1ab/nsp3	1189	T1189T	acC	acT	1	1	AY.1	0.000396
ORF1ab/nsp3	1189	T1189del	ACC	---	1	1	AY.101	0.00049
ORF1ab/nsp3	1189	T1189I	aCc	aTc	1	1	AY.101	0.00049
ORF1ab/nsp3	1189	T1189A	Acc	Gcc	1	1	AY.102	0.000027
ORF1ab/nsp3	1189	T1189T	acC	acT	1	1	AY.105	0.000643
ORF1ab/nsp3	1189	T1189I	aCc	aTc	1	1	AY.105	0.000643
ORF1ab/nsp3	1189	T1189T	acC	acT	1	1	AY.108	0.001103
ORF1ab/nsp3	1189	T1189T	acC	acT	1	1	AY.11	0.001339
ORF1ab/nsp3	1189	T1189I	aCc	aTc	1	1	AY.113	0.000142
ORF1ab/nsp3	1189	T1189N	aCc	aAc	1	1	AY.113	0.000142
ORF1ab/nsp3	1189	T1189I	aCc	aTc	1	1	AY.114	0.000231
ORF1ab/nsp3	1189	T1189A	Acc	Gcc	1	1	AY.118	0.000063
ORF1ab/nsp3	1189	T1189A	Acc	Gcc	1	1	AY.119	0.000035
ORF1ab/nsp3	1189	T1189T	acC	acT	1	1	AY.120.2.1	0.000498
ORF1ab/nsp3	1189	T1189I	aCc	aTc	1	1	AY.13	0.000161
ORF1ab/nsp3	1189	T1189I	aCc	aTc	1	1	AY.14	0.000088
ORF1ab/nsp3	1189	T1189T	acC	acT	1	1	AY.14	0.000088
ORF1ab/nsp3	1189	T1189I	aCc	aTc	1	1	AY.16.1	0.00047
ORF1ab/nsp3	1189	T1189A	Acc	Gcc	1	1	AY.20	0.000039
ORF1ab/nsp3	1189	T1189T	acC	acT	1	1	AY.24	0.000431
ORF1ab/nsp3	1189	T1189N	aCc	aAc	1	1	AY.25	0.000006
ORF1ab/nsp3	1189	T1189A	Acc	Gcc	1	1	AY.29	0.000016
ORF1ab/nsp3	1189	T1189T	acC	acT	1	1	AY.29.1	0.000221
ORF1ab/nsp3	1189	T1189A	Acc	Gcc	1	1	AY.3.1	0.000085
ORF1ab/nsp3	1189	T1189T	acC	acT	1	1	AY.3.1	0.000085
ORF1ab/nsp3	1189	T1189I	aCc	aTc	1	1	AY.32	0.000532
ORF1ab/nsp3	1189	T1189I	aCc	aTc	1	1	AY.34	0.000097
ORF1ab/nsp3	1189	T1189I	aCc	aTc	1	1	AY.37	0.000316
ORF1ab/nsp3	1189	T1189A	Acc	Gcc	1	1	AY.39	0.000025
ORF1ab/nsp3	1189	T1189S	aCc	aGc	1	1	AY.4	0.000002
ORF1ab/nsp3	1189	T1189del	ACC	---	1	1	AY.4	0.000002
ORF1ab/nsp3	1189	T1189A	Acc	Gcc	1	1	AY.42	0.00004
ORF1ab/nsp3	1189	T1189del	ACC	---	1	1	AY.43	0.000004
ORF1ab/nsp3	1189	T1189del1	aCc	a-c	1	1	AY.43	0.000004
ORF1ab/nsp3	1189	T1189A	Acc	Gcc	1	1	AY.43	0.000004
ORF1ab/nsp3	1189	T1189del2	ACc	--c	1	1	AY.44	0.000006
ORF1ab/nsp3	1189	T1189I	aCc	aTc	1	1	AY.46.1	0.001027
ORF1ab/nsp3	1189	T1189T	acC	acT	1	1	AY.46.4	0.000165
ORF1ab/nsp3	1189	T1189I	aCc	aTc	1	1	AY.46.4	0.000165
ORF1ab/nsp3	1189	T1189I	aCc	aTc	1	1	AY.46.5	0.000198
ORF1ab/nsp3	1189	T1189T	acC	acT	1	1	AY.46.5	0.000198
ORF1ab/nsp3	1189	T1189A	Acc	Gcc	1	1	AY.47	0.000031
ORF1ab/nsp3	1189	T1189A	Acc	Gcc	1	1	AY.5	0.000021
ORF1ab/nsp3	1189	T1189I	aCc	aTc	1	1	AY.5.3	0.000337
ORF1ab/nsp3	1189	T1189T	acC	acT	1	1	AY.5.4	0.000277
ORF1ab/nsp3	1189	T1189I	aCc	aTc	1	1	AY.5.4	0.000277
ORF1ab/nsp3	1189	T1189T	acC	acT	1	1	AY.51	0.000909
ORF1ab/nsp3	1189	T1189T	acC	acT	1	1	AY.58	0.000907
ORF1ab/nsp3	1189	T1189T	acC	acT	1	1	AY.59	0.00053
ORF1ab/nsp3	1189	T1189del2	ACc	--c	1	1	AY.61	0.000105
ORF1ab/nsp3	1189	T1189I	aCc	aTc	1	1	AY.62	0.000436
ORF1ab/nsp3	1189	T1189T	acC	acT	1	1	AY.64	0.000595
ORF1ab/nsp3	1189	T1189I	aCc	aTc	1	1	AY.64	0.000595
ORF1ab/nsp3	1189	T1189del	ACC	---	1	1	AY.66	0.00107
ORF1ab/nsp3	1189	T1189T	acC	acT	1	1	AY.67	0.000464
ORF1ab/nsp3	1189	T1189I	aCc	aTc	1	1	AY.68	0.000274
ORF1ab/nsp3	1189	T1189T	acC	acT	1	1	AY.68	0.000274
ORF1ab/nsp3	1189	T1189I	aCc	aTc	1	1	AY.7	0.000196
ORF1ab/nsp3	1189	T1189I	aCc	aTc	1	1	AY.7.1	0.000113
ORF1ab/nsp3	1189	T1189A	Acc	Gcc	1	1	AY.71	0.000475
ORF1ab/nsp3	1189	T1189I	aCc	aTc	1	1	AY.74	0.000116
ORF1ab/nsp3	1189	T1189I	aCc	aTc	1	1	AY.75.1	0.00018
ORF1ab/nsp3	1189	T1189T	acC	acT	1	1	AY.76	0.004831
ORF1ab/nsp3	1189	T1189I	aCc	aTc	1	1	AY.79	0.001211
ORF1ab/nsp3	1189	T1189I	aCc	aTc	1	1	AY.80	0.001129
ORF1ab/nsp3	1189	T1189del	ACC	---	1	1	AY.85	0.000427
ORF1ab/nsp3	1189	T1189I	aCc	aTc	1	1	AY.87	0.000833
ORF1ab/nsp3	1189	T1189I	aCc	aTc	1	1	AY.88	0.000884
ORF1ab/nsp3	1189	T1189I	aCc	aTc	1	1	AY.89	0.004902
ORF1ab/nsp3	1189	T1189T	acC	acT	1	1	AY.9.1	0.000084
ORF1ab/nsp3	1189	T1189I	aCc	aTc	1	1	AY.90	0.000684
ORF1ab/nsp3	1189	T1189T	acC	acT	1	1	AY.95	0.000761
ORF1ab/nsp3	1189	T1189T	acC	acT	1	1	AZ.2.1	0.00813
ORF1ab/nsp3	1189	T1189A	Acc	Gcc	1	1	B.1	0.000009
ORF1ab/nsp3	1189	T1189N	aCc	aAc	1	1	B.1.1	0.000018
ORF1ab/nsp3	1189	T1189del	ACC	---	1	1	B.1.1	0.000018
ORF1ab/nsp3	1189	T1189T	acC	acT	1	1	B.1.1.101	0.01
ORF1ab/nsp3	1189	T1189T	acC	acT	1	1	B.1.1.12	0.007463
ORF1ab/nsp3	1189	T1189I	aCc	aTc	1	1	B.1.1.121	0.002427
ORF1ab/nsp3	1189	T1189I	aCc	aTc	1	1	B.1.1.128	0.007092
ORF1ab/nsp3	1189	T1189T	acC	acT	1	1	B.1.1.129	0.009174
ORF1ab/nsp3	1189	T1189T	acC	acT	1	1	B.1.1.13	0.035714
ORF1ab/nsp3	1189	T1189I	aCc	aTc	1	1	B.1.1.133	0.008475
ORF1ab/nsp3	1189	T1189I	aCc	aTc	1	1	B.1.1.135	0.004695
ORF1ab/nsp3	1189	T1189T	acC	acT	1	1	B.1.1.15	0.013514
ORF1ab/nsp3	1189	T1189T	acC	acT	1	1	B.1.1.153	0.001095
ORF1ab/nsp3	1189	T1189T	acC	acT	1	1	B.1.1.176	0.000439
ORF1ab/nsp3	1189	T1189I	aCc	aTc	1	1	B.1.1.214	0.000055
ORF1ab/nsp3	1189	T1189T	acC	acT	1	1	B.1.1.228	0.003049
ORF1ab/nsp3	1189	T1189I	aCc	aTc	1	1	B.1.1.228	0.003049
ORF1ab/nsp3	1189	T1189T	acC	acT	1	1	B.1.1.231	0.003096
ORF1ab/nsp3	1189	T1189T	acC	acT	1	1	B.1.1.234	0.012048
ORF1ab/nsp3	1189	T1189T	acC	acT	1	1	B.1.1.240	0.004695
ORF1ab/nsp3	1189	T1189I	aCc	aTc	1	1	B.1.1.25	0.000569
ORF1ab/nsp3	1189	T1189T	acC	acT	1	1	B.1.1.255	0.00303
ORF1ab/nsp3	1189	T1189I	aCc	aTc	1	1	B.1.1.274	0.005051
ORF1ab/nsp3	1189	T1189T	acC	acT	1	1	B.1.1.279	0.001121
ORF1ab/nsp3	1189	T1189T	acC	acT	1	1	B.1.1.294	0.001266
ORF1ab/nsp3	1189	T1189I	aCc	aTc	1	1	B.1.1.301	0.001179
ORF1ab/nsp3	1189	T1189T	acC	acT	1	1	B.1.1.302	0.002075
ORF1ab/nsp3	1189	T1189I	aCc	aTc	1	1	B.1.1.311	0.000358
ORF1ab/nsp3	1189	T1189T	acC	acT	1	1	B.1.1.311	0.000358
ORF1ab/nsp3	1189	T1189T	acC	acT	1	1	B.1.1.312	0.001912
ORF1ab/nsp3	1189	T1189T	acC	acA	1	1	B.1.1.316	0.000925
ORF1ab/nsp3	1189	T1189T	acC	acT	1	1	B.1.1.317	0.000412
ORF1ab/nsp3	1189	T1189T	acC	acT	1	1	B.1.1.318	0.000302
ORF1ab/nsp3	1189	T1189I	aCc	aTc	1	1	B.1.1.322	0.008772
ORF1ab/nsp3	1189	T1189I	aCc	aTc	1	1	B.1.1.347	0.018182
ORF1ab/nsp3	1189	T1189del	ACC	---	1	1	B.1.1.348	0.000796
ORF1ab/nsp3	1189	T1189I	aCc	aTc	1	1	B.1.1.365	0.005587
ORF1ab/nsp3	1189	T1189T	acC	acT	1	1	B.1.1.377	0.001381
ORF1ab/nsp3	1189	T1189T	acC	acT	1	1	B.1.1.397	0.002252
ORF1ab/nsp3	1189	T1189I	aCc	aTc	1	1	B.1.1.412	0.007634
ORF1ab/nsp3	1189	T1189I	aCc	aTc	1	1	B.1.1.413	0.006897
ORF1ab/nsp3	1189	T1189T	acC	acT	1	1	B.1.1.420	0.001006
ORF1ab/nsp3	1189	T1189T	acC	acT	1	1	B.1.1.44	0.00241
ORF1ab/nsp3	1189	T1189T	acC	acT	1	1	B.1.1.442	0.018519
ORF1ab/nsp3	1189	T1189T	acC	acT	1	1	B.1.1.445	0.037037
ORF1ab/nsp3	1189	T1189T	acC	acT	1	1	B.1.1.448	0.002033
ORF1ab/nsp3	1189	T1189T	acC	acT	1	1	B.1.1.46	0.004367
ORF1ab/nsp3	1189	T1189I	aCc	aTc	1	1	B.1.1.464	0.001473
ORF1ab/nsp3	1189	T1189N	aCc	aAc	1	1	B.1.1.519	0.00004
ORF1ab/nsp3	1189	T1189I	aCc	aTc	1	1	B.1.1.57	0.011494
ORF1ab/nsp3	1189	T1189I	aCc	aTc	1	1	B.1.1.61	0.008772
ORF1ab/nsp3	1189	T1189T	acC	acT	1	1	B.1.1.63	0.000386
ORF1ab/nsp3	1189	T1189P	Acc	Ccc	1	1	B.1.1.7	0.000001
ORF1ab/nsp3	1189	T1189del2	ACc	--c	1	1	B.1.1.7	0.000001
ORF1ab/nsp3	1189	T1189T	acC	acT	1	1	B.1.1.89	0.006061
ORF1ab/nsp3	1189	T1189T	acC	acT	1	1	B.1.1.95	0.019608
ORF1ab/nsp3	1189	T1189T	acC	acT	1	1	B.1.103	0.019231
ORF1ab/nsp3	1189	T1189I	aCc	aTc	1	1	B.1.105	0.009615
ORF1ab/nsp3	1189	T1189I	aCc	aTc	1	1	B.1.110	0.004525
ORF1ab/nsp3	1189	T1189T	acC	acT	1	1	B.1.110.3	0.000718
ORF1ab/nsp3	1189	T1189T	acC	acT	1	1	B.1.127	0.002198
ORF1ab/nsp3	1189	T1189T	acC	acT	1	1	B.1.157	0.002985
ORF1ab/nsp3	1189	T1189T	acC	acT	1	1	B.1.160.26	0.002421
ORF1ab/nsp3	1189	T1189T	acC	acT	1	1	B.1.160.28	0.002924
ORF1ab/nsp3	1189	T1189T	acC	acT	1	1	B.1.160.8	0.001289
ORF1ab/nsp3	1189	T1189T	acC	acT	1	1	B.1.170	0.00431
ORF1ab/nsp3	1189	T1189del	ACC	---	1	1	B.1.177	0.000013
ORF1ab/nsp3	1189	T1189I	aCC	aTT	1	1	B.1.177.12	0.000152
ORF1ab/nsp3	1189	T1189I	aCC	aTT	1	1	B.1.177.18	0.00116
ORF1ab/nsp3	1189	T1189I	aCC	aTT	1	1	B.1.177.24	0.001295
ORF1ab/nsp3	1189	T1189I	aCC	aTT	1	1	B.1.177.40	0.005155
ORF1ab/nsp3	1189	T1189I	aCC	aTT	1	1	B.1.177.51	0.004566
ORF1ab/nsp3	1189	T1189I	aCC	aTT	1	1	B.1.177.53	0.002392
ORF1ab/nsp3	1189	T1189I	aCC	aTT	1	1	B.1.177.56	0.000668
ORF1ab/nsp3	1189	T1189del	ACC	---	1	1	B.1.177.62	0.001192
ORF1ab/nsp3	1189	T1189I	aCC	aTT	1	1	B.1.177.78	0.009709
ORF1ab/nsp3	1189	T1189I	aCC	aTT	1	1	B.1.177.87	0.000728
ORF1ab/nsp3	1189	T1189I	aCC	aTT	1	1	B.1.177.9	0.001332
ORF1ab/nsp3	1189	T1189H	ACc	CAc	1	1	B.1.2	0.000009
ORF1ab/nsp3	1189	T1189I	aCc	aTc	1	1	B.1.214	0.003663
ORF1ab/nsp3	1189	T1189T	acC	acT	1	1	B.1.22	0.001318
ORF1ab/nsp3	1189	T1189T	acC	acT	1	1	B.1.221.4	0.004167
ORF1ab/nsp3	1189	T1189I	aCc	aTc	1	1	B.1.237	0.004975
ORF1ab/nsp3	1189	T1189T	acC	acT	1	1	B.1.239	0.001221
ORF1ab/nsp3	1189	T1189I	aCc	aTc	1	1	B.1.241	0.000812
ORF1ab/nsp3	1189	T1189A	Acc	Gcc	1	1	B.1.258	0.000067
ORF1ab/nsp3	1189	T1189T	acC	acT	1	1	B.1.268	0.010417
ORF1ab/nsp3	1189	T1189T	acC	acT	1	1	B.1.281	0.021739
ORF1ab/nsp3	1189	T1189T	acC	acT	1	1	B.1.284	0.013158
ORF1ab/nsp3	1189	T1189T	acC	acT	1	1	B.1.293	0.0125
ORF1ab/nsp3	1189	T1189A	Acc	Gcc	1	1	B.1.311	0.000275
ORF1ab/nsp3	1189	T1189T	acC	acG	1	1	B.1.333	0.010526
ORF1ab/nsp3	1189	T1189I	aCc	aTc	1	1	B.1.346	0.001311
ORF1ab/nsp3	1189	T1189T	acC	acT	1	1	B.1.356	0.001727
ORF1ab/nsp3	1189	T1189T	acC	acT	1	1	B.1.36.1	0.00114
ORF1ab/nsp3	1189	T1189I	aCc	aTc	1	1	B.1.36.10	0.004785
ORF1ab/nsp3	1189	T1189T	acC	acT	1	1	B.1.36.17	0.000494
ORF1ab/nsp3	1189	T1189T	acC	acT	1	1	B.1.36.19	0.009259
ORF1ab/nsp3	1189	T1189T	acC	acT	1	1	B.1.36.22	0.001208
ORF1ab/nsp3	1189	T1189del1	aCc	a-c	1	1	B.1.36.29	0.000517
ORF1ab/nsp3	1189	T1189T	acC	acT	1	1	B.1.36.31	0.001751
ORF1ab/nsp3	1189	T1189T	acC	acT	1	1	B.1.36.9	0.003215
ORF1ab/nsp3	1189	T1189T	acC	acT	1	1	B.1.366	0.004878
ORF1ab/nsp3	1189	T1189I	aCc	aTc	1	1	B.1.367	0.000792
ORF1ab/nsp3	1189	T1189T	acC	acT	1	1	B.1.380	0.006623
ORF1ab/nsp3	1189	T1189T	acC	acT	1	1	B.1.381	0.007812
ORF1ab/nsp3	1189	T1189T	acC	acT	1	1	B.1.382	0.008929
ORF1ab/nsp3	1189	T1189I	aCc	aTc	1	1	B.1.398	0.002976
ORF1ab/nsp3	1189	T1189I	aCc	aTc	1	1	B.1.400	0.000429
ORF1ab/nsp3	1189	T1189T	acC	acT	1	1	B.1.400	0.000429
ORF1ab/nsp3	1189	T1189T	acC	acT	1	1	B.1.408	0.00369
ORF1ab/nsp3	1189	T1189T	acC	acT	1	1	B.1.423	0.010204
ORF1ab/nsp3	1189	T1189I	aCc	aTc	1	1	B.1.426	0.001009
ORF1ab/nsp3	1189	T1189N	aCC	aAT	1	1	B.1.429	0.000024
ORF1ab/nsp3	1189	T1189T	acC	acT	1	1	B.1.443	0.004673
ORF1ab/nsp3	1189	T1189T	acC	acT	1	1	B.1.448	0.002625
ORF1ab/nsp3	1189	T1189T	acC	acT	1	1	B.1.450	0.011364
ORF1ab/nsp3	1189	T1189I	aCc	aTc	1	1	B.1.452	0.013699
ORF1ab/nsp3	1189	T1189T	acC	acT	1	1	B.1.456	0.003268
ORF1ab/nsp3	1189	T1189I	aCc	aTc	1	1	B.1.465	0.003802
ORF1ab/nsp3	1189	T1189T	acC	acT	1	1	B.1.466	0.023256
ORF1ab/nsp3	1189	T1189T	acC	acT	1	1	B.1.468	0.005714
ORF1ab/nsp3	1189	T1189T	acC	acT	1	1	B.1.469	0.00361
ORF1ab/nsp3	1189	T1189I	aCc	aTc	1	1	B.1.470	0.001404
ORF1ab/nsp3	1189	T1189T	acC	acT	1	1	B.1.474	0.001901
ORF1ab/nsp3	1189	T1189T	acC	acT	1	1	B.1.499	0.00105
ORF1ab/nsp3	1189	T1189I	aCc	aTc	1	1	B.1.517	0.000427
ORF1ab/nsp3	1189	T1189I	aCc	aTc	1	1	B.1.524	0.001406
ORF1ab/nsp3	1189	T1189M	aCC	aTG	1	1	B.1.525	0.000113
ORF1ab/nsp3	1189	T1189V	ACc	GTc	1	1	B.1.525	0.000113
ORF1ab/nsp3	1189	T1189T	acC	acT	1	1	B.1.540	0.009709
ORF1ab/nsp3	1189	T1189I	aCc	aTc	1	1	B.1.547	0.02439
ORF1ab/nsp3	1189	T1189T	acC	acA	1	1	B.1.551	0.00129
ORF1ab/nsp3	1189	T1189A	Acc	Gcc	1	1	B.1.564	0.000426
ORF1ab/nsp3	1189	T1189I	aCc	aTc	1	1	B.1.564	0.000426
ORF1ab/nsp3	1189	T1189I	aCc	aTc	1	1	B.1.567	0.003333
ORF1ab/nsp3	1189	T1189T	acC	acT	1	1	B.1.575.1	0.002439
ORF1ab/nsp3	1189	T1189I	aCc	aTc	1	1	B.1.577	0.000687
ORF1ab/nsp3	1189	T1189I	aCc	aTc	1	1	B.1.580	0.004065
ORF1ab/nsp3	1189	T1189T	acC	acT	1	1	B.1.581	0.009434
ORF1ab/nsp3	1189	T1189I	aCc	aTc	1	1	B.1.585	0.027778
ORF1ab/nsp3	1189	T1189I	aCC	aTT	1	1	B.1.588	0.00091
ORF1ab/nsp3	1189	T1189I	aCc	aTc	1	1	B.1.595	0.000261
ORF1ab/nsp3	1189	T1189T	acC	acT	1	1	B.1.599	0.00365
ORF1ab/nsp3	1189	T1189T	acC	acT	1	1	B.1.600	0.005848
ORF1ab/nsp3	1189	T1189I	aCc	aTc	1	1	B.1.609	0.000479
ORF1ab/nsp3	1189	T1189I	aCc	aTc	1	1	B.1.621.1	0.000506
ORF1ab/nsp3	1189	T1189T	acC	acT	1	1	B.1.623	0.000536
ORF1ab/nsp3	1189	T1189del	ACC	---	1	1	B.1.630	0.005236
ORF1ab/nsp3	1189	T1189I	aCc	aTc	1	1	B.1.631	0.003367
ORF1ab/nsp3	1189	T1189T	acC	acT	1	1	B.1.633	0.041667
ORF1ab/nsp3	1189	T1189T	acC	acT	1	1	B.1.78	0.008547
ORF1ab/nsp3	1189	T1189T	acC	acT	1	1	B.1.9	0.006173
ORF1ab/nsp3	1189	T1189T	acC	acT	1	1	B.1.94	0.027027
ORF1ab/nsp3	1189	T1189T	acC	acT	1	1	B.3	0.000831
ORF1ab/nsp3	1189	T1189I	aCc	aTc	1	1	B.6	0.00091
ORF1ab/nsp3	1189	T1189T	acC	acT	1	1	C.27	0.018519
ORF1ab/nsp3	1189	T1189X	ACC	TAG	1	1	C.35	0.000774
ORF1ab/nsp3	1189	T1189T	acC	acT	1	1	C.35	0.000774
ORF1ab/nsp3	1189	T1189I	aCc	aTc	1	1	C.36	0.000911
ORF1ab/nsp3	1189	T1189del	ACC	---	1	1	C.37	0.000116
ORF1ab/nsp3	1189	T1189T	acC	acT	1	1	N.9	0.005952
ORF1ab/nsp3	1189	T1189S	aCc	aGc	1	1	P.1	0.000016
ORF1ab/nsp3	1189	T1189del	ACC	---	1	1	P.1	0.000016
ORF1ab/nsp3	1189	T1189T	acC	acT	1	1	P.1.1	0.000318
ORF1ab/nsp3	1189	T1189I	aCc	aTc	1	1	P.1.10	0.000269
ORF1ab/nsp3	1189	T1189T	acC	acT	1	1	P.1.13	0.000898
ORF1ab/nsp3	1189	T1189N	aCc	aAc	1	1	P.1.14	0.000048
ORF1ab/nsp3	1189	T1189A	Acc	Gcc	1	1	P.1.14	0.000048
ORF1ab/nsp3	1189	T1189T	acC	acT	1	1	P.1.16	0.000374
ORF1ab/nsp3	1189	T1189I	aCc	aTc	1	1	P.1.17	0.000162
ORF1ab/nsp3	1189	T1189T	acC	acT	1	1	P.1.2	0.001156
ORF1ab/nsp3	1189	T1189I	aCc	aTc	1	1	P.1.4	0.000977
ORF1ab/nsp3	1189	T1189T	acC	acT	1	1	P.1.6	0.001946
ORF1ab/nsp3	1189	T1189T	acC	acA	1	1	P.1.8	0.004785
ORF1ab/nsp3	1189	T1189I	aCc	aTc	1	1	P.3	0.001595
ORF1ab/nsp3	1189	T1189T	acC	acT	1	1	P.3	0.001595
ORF1ab/nsp3	1189	T1189I	aCc	aTc	1	1	Q.1	0.000126
ORF1ab/nsp3	1189	T1189T	acC	acA	1	1	Q.3	0.000145
ORF1ab/nsp3	1189	T1189S	Acc	Tcc	1	1	Q.3	0.000145
ORF1ab/nsp3	1189	T1189A	Acc	Gcc	1	1	R.1	0.00009

CoV-GLUE is still in development. CoV-GLUE was originally developed as part of COG-UK by Josh Singer using the GLUE framework at the MRC-University of Glasgow Centre for Virus Research (CVR). In 2021 it was redeveloped by Richard Orton to scale to the millions of genome sequences available. We acknowledge support from the MRC (MC_UU_12014/12), WT (220977/Z/20/Z) and UKRI G2P (MR/W005611/1). Please contact Richard Orton with any queries: Richard.Orton@glasgow.ac.uk

CoV-GLUE uses sequence data from GISAID. GISAID data provided via this web application is subject to GISAID's Terms and Conditions.