CoV-GLUE | Mutations | Mutation
Details of the codons used for the mutation across all lineages (CodonProp is the proportion each codon is used for this AA mutation):
ORF | CodonNum | Mut | ORF1abMut | MutType | RefCodon | MutCodon | AACount | CodonCount | CodonProp | Genome Position |
ORF1ab/nsp3 | 1189 | T1189T | T2007T | syn | acC | acT | 179676 | 179228 | 0.997507 | 6284-6286 |
ORF1ab/nsp3 | 1189 | T1189T | T2007T | syn | acC | acA | 179676 | 422 | 0.00234867 | 6284-6286 |
ORF1ab/nsp3 | 1189 | T1189T | T2007T | syn | acC | acG | 179676 | 26 | 0.000144705 | 6284-6286 |
ORF1ab/nsp3 | 1189 | T1189I | T2007I | nonsyn | aCc | aTc | 21255 | 19006 | 0.89419 | 6284-6286 |
ORF1ab/nsp3 | 1189 | T1189I | T2007I | nonsyn | aCC | aTT | 21255 | 2247 | 0.105716 | 6284-6286 |
ORF1ab/nsp3 | 1189 | T1189I | T2007I | nonsyn | aCC | aTA | 21255 | 2 | 0.0000940955 | 6284-6286 |
ORF1ab/nsp3 | 1189 | T1189A | T2007A | nonsyn | Acc | Gcc | 383 | 383 | 1 | 6284-6286 |
ORF1ab/nsp3 | 1189 | T1189N | T2007N | nonsyn | aCc | aAc | 60 | 51 | 0.85 | 6284-6286 |
ORF1ab/nsp3 | 1189 | T1189N | T2007N | nonsyn | aCC | aAT | 60 | 9 | 0.15 | 6284-6286 |
ORF1ab/nsp3 | 1189 | T1189del | T2007del | del | ACC | --- | 22 | 22 | 1 | 6284-6286 |
ORF1ab/nsp3 | 1189 | T1189S | T2007S | nonsyn | aCc | aGc | 10 | 6 | 0.6 | 6284-6286 |
ORF1ab/nsp3 | 1189 | T1189S | T2007S | nonsyn | Acc | Tcc | 10 | 4 | 0.4 | 6284-6286 |
ORF1ab/nsp3 | 1189 | T1189del2 | T2007del2 | del | ACc | --c | 3 | 3 | 1 | 6284-6286 |
ORF1ab/nsp3 | 1189 | T1189del1 | T2007del1 | del | aCc | a-c | 2 | 2 | 1 | 6284-6286 |
ORF1ab/nsp3 | 1189 | T1189V | T2007V | nonsyn | ACc | GTc | 1 | 1 | 1 | 6284-6286 |
ORF1ab/nsp3 | 1189 | T1189X | T2007X | nonsyn | ACC | TAG | 1 | 1 | 1 | 6284-6286 |
ORF1ab/nsp3 | 1189 | T1189P | T2007P | nonsyn | Acc | Ccc | 1 | 1 | 1 | 6284-6286 |
ORF1ab/nsp3 | 1189 | T1189H | T2007H | nonsyn | ACc | CAc | 1 | 1 | 1 | 6284-6286 |
ORF1ab/nsp3 | 1189 | T1189M | T2007M | nonsyn | aCC | aTG | 1 | 1 | 1 | 6284-6286 |
Details of the mutation no within lineages (LineageCodonProp is the proportion the codon is observed at, at this particular site, on each lineage):
ORF | CodonNum | Mut | RefCodon | MutCodon | CodonCount | AACount | Lineage | LineageCodonProp |
ORF1ab/nsp3 | 1189 | T1189T | acC | acT | 179228 | 179676 | All | 0.034279 |
ORF1ab/nsp3 | 1189 | T1189T | acC | acA | 422 | 179676 | All | 0.000081 |
ORF1ab/nsp3 | 1189 | T1189T | acC | acG | 26 | 179676 | All | 0.000005 |
ORF1ab/nsp3 | 1189 | T1189T | acC | acT | 73765 | 73766 | B.1.177 | 0.971308 |
ORF1ab/nsp3 | 1189 | T1189T | acC | acA | 1 | 73766 | B.1.177 | 0.000013 |
ORF1ab/nsp3 | 1189 | T1189I | aCc | aTc | 19006 | 21255 | All | 0.003635 |
ORF1ab/nsp3 | 1189 | T1189I | aCC | aTT | 2247 | 21255 | All | 0.00043 |
ORF1ab/nsp3 | 1189 | T1189I | aCC | aTA | 2 | 21255 | All | 0 |
ORF1ab/nsp3 | 1189 | T1189T | acC | acT | 13044 | 13044 | B.1.177.21 | 0.997476 |
ORF1ab/nsp3 | 1189 | T1189I | aCc | aTc | 8703 | 8730 | B.1.525 | 0.984836 |
ORF1ab/nsp3 | 1189 | T1189I | aCC | aTT | 25 | 8730 | B.1.525 | 0.002829 |
ORF1ab/nsp3 | 1189 | T1189I | aCC | aTA | 2 | 8730 | B.1.525 | 0.000226 |
ORF1ab/nsp3 | 1189 | T1189T | acC | acT | 6570 | 6570 | B.1.177.12 | 0.996663 |
ORF1ab/nsp3 | 1189 | T1189T | acC | acT | 5962 | 5962 | B.1.177.7 | 0.982855 |
ORF1ab/nsp3 | 1189 | T1189T | acC | acT | 5359 | 5359 | B.1.177.86 | 0.983122 |
ORF1ab/nsp3 | 1189 | T1189T | acC | acT | 5234 | 5234 | B.1.177.81 | 0.990913 |
ORF1ab/nsp3 | 1189 | T1189T | acC | acT | 4727 | 4727 | B.1.177.4 | 0.997678 |
ORF1ab/nsp3 | 1189 | T1189T | acC | acT | 4452 | 4452 | B.1.177.60 | 0.972477 |
ORF1ab/nsp3 | 1189 | T1189T | acC | acT | 3512 | 3512 | B.1.177.57 | 0.986794 |
ORF1ab/nsp3 | 1189 | T1189T | acC | acT | 2562 | 2562 | B.1.177.45 | 0.976744 |
ORF1ab/nsp3 | 1189 | T1189T | acC | acT | 1972 | 2216 | B.1.1.7 | 0.001765 |
ORF1ab/nsp3 | 1189 | T1189T | acC | acA | 237 | 2216 | B.1.1.7 | 0.000212 |
ORF1ab/nsp3 | 1189 | T1189T | acC | acG | 7 | 2216 | B.1.1.7 | 0.000006 |
ORF1ab/nsp3 | 1189 | T1189T | acC | acT | 2079 | 2079 | B.1.177.82 | 0.992363 |
ORF1ab/nsp3 | 1189 | T1189T | acC | acT | 1850 | 1850 | B.1.177.44 | 0.960042 |
ORF1ab/nsp3 | 1189 | T1189T | acC | acT | 1643 | 1643 | B.1.177.54 | 0.996361 |
ORF1ab/nsp3 | 1189 | T1189T | acC | acT | 1574 | 1574 | B.1.177.15 | 0.99306 |
ORF1ab/nsp3 | 1189 | T1189T | acC | acT | 1501 | 1501 | B.1.177.16 | 0.997342 |
ORF1ab/nsp3 | 1189 | T1189T | acC | acT | 1501 | 1501 | B.1.177.65 | 0.998669 |
ORF1ab/nsp3 | 1189 | T1189T | acC | acT | 1491 | 1491 | B.1.177.56 | 0.995327 |
ORF1ab/nsp3 | 1189 | T1189I | aCc | aTc | 1454 | 1470 | B.1.232 | 0.7813 |
ORF1ab/nsp3 | 1189 | T1189I | aCC | aTT | 16 | 1470 | B.1.232 | 0.008598 |
ORF1ab/nsp3 | 1189 | T1189T | acC | acT | 1444 | 1451 | B.1 | 0.013226 |
ORF1ab/nsp3 | 1189 | T1189T | acC | acG | 4 | 1451 | B.1 | 0.000037 |
ORF1ab/nsp3 | 1189 | T1189T | acC | acA | 3 | 1451 | B.1 | 0.000027 |
ORF1ab/nsp3 | 1189 | T1189T | acC | acT | 1437 | 1437 | B.1.177.35 | 0.993089 |
ORF1ab/nsp3 | 1189 | T1189T | acC | acT | 1368 | 1368 | B.1.177.87 | 0.995633 |
ORF1ab/nsp3 | 1189 | T1189T | acC | acT | 1367 | 1367 | B.1.177.77 | 0.992738 |
ORF1ab/nsp3 | 1189 | T1189T | acC | acT | 1326 | 1326 | B.1.177.8 | 0.997743 |
ORF1ab/nsp3 | 1189 | T1189T | acC | acT | 1216 | 1216 | B.1.177.17 | 0.998358 |
ORF1ab/nsp3 | 1189 | T1189T | acC | acT | 1209 | 1210 | B.1.177.73 | 0.684598 |
ORF1ab/nsp3 | 1189 | T1189T | acC | acG | 1 | 1210 | B.1.177.73 | 0.000566 |
ORF1ab/nsp3 | 1189 | T1189I | aCc | aTc | 1207 | 1207 | B.1.1.7 | 0.001081 |
ORF1ab/nsp3 | 1189 | T1189I | aCC | aTT | 1195 | 1200 | B.1.177 | 0.015735 |
ORF1ab/nsp3 | 1189 | T1189I | aCc | aTc | 5 | 1200 | B.1.177 | 0.000066 |
ORF1ab/nsp3 | 1189 | T1189I | aCc | aTc | 1177 | 1196 | B.1.565 | 0.953809 |
ORF1ab/nsp3 | 1189 | T1189I | aCC | aTT | 19 | 1196 | B.1.565 | 0.015397 |
ORF1ab/nsp3 | 1189 | T1189I | aCc | aTc | 1157 | 1159 | B.1.617.2 | 0.004357 |
ORF1ab/nsp3 | 1189 | T1189I | aCC | aTT | 2 | 1159 | B.1.617.2 | 0.000008 |
ORF1ab/nsp3 | 1189 | T1189I | aCc | aTc | 1134 | 1134 | AY.39 | 0.028023 |
ORF1ab/nsp3 | 1189 | T1189T | acC | acT | 1113 | 1113 | B.1.177.42 | 0.995528 |
ORF1ab/nsp3 | 1189 | T1189T | acC | acT | 1101 | 1101 | B.1.177.10 | 0.966637 |
ORF1ab/nsp3 | 1189 | T1189T | acC | acT | 1081 | 1081 | B.1.177.46 | 0.992654 |
ORF1ab/nsp3 | 1189 | T1189T | acC | acT | 1008 | 1008 | B.1.177.6 | 0.984375 |
ORF1ab/nsp3 | 1189 | T1189T | acC | acT | 952 | 952 | B.1.177.75 | 0.990635 |
ORF1ab/nsp3 | 1189 | T1189T | acC | acT | 859 | 859 | B.1.177.18 | 0.99652 |
ORF1ab/nsp3 | 1189 | T1189T | acC | acT | 838 | 838 | B.1.221 | 0.059526 |
ORF1ab/nsp3 | 1189 | T1189T | acC | acT | 818 | 818 | B.1.177.62 | 0.97497 |
ORF1ab/nsp3 | 1189 | T1189T | acC | acT | 805 | 805 | B.1.177.5 | 1 |
ORF1ab/nsp3 | 1189 | T1189T | acC | acT | 766 | 766 | B.1.177.24 | 0.992228 |
ORF1ab/nsp3 | 1189 | T1189T | acC | acT | 748 | 748 | B.1.177.9 | 0.996005 |
ORF1ab/nsp3 | 1189 | T1189T | acC | acT | 744 | 744 | B.1.177.58 | 0.990679 |
ORF1ab/nsp3 | 1189 | T1189T | acC | acT | 739 | 739 | W.4 | 0.998649 |
ORF1ab/nsp3 | 1189 | T1189T | acC | acT | 736 | 736 | B.1.177.32 | 0.993252 |
ORF1ab/nsp3 | 1189 | T1189T | acC | acT | 695 | 695 | B.1.177.19 | 0.994278 |
ORF1ab/nsp3 | 1189 | T1189T | acC | acT | 674 | 674 | B.1.177.69 | 1 |
ORF1ab/nsp3 | 1189 | T1189T | acC | acT | 659 | 659 | B.1.177.20 | 1 |
ORF1ab/nsp3 | 1189 | T1189T | acC | acT | 644 | 644 | B.1.177.43 | 0.951256 |
ORF1ab/nsp3 | 1189 | T1189T | acC | acT | 605 | 605 | B.1.177.33 | 0.995066 |
ORF1ab/nsp3 | 1189 | T1189T | acC | acT | 589 | 589 | B.1.177.11 | 1 |
ORF1ab/nsp3 | 1189 | T1189T | acC | acT | 565 | 565 | B.1.177.52 | 0.99297 |
ORF1ab/nsp3 | 1189 | T1189T | acC | acT | 541 | 546 | AY.4 | 0.000842 |
ORF1ab/nsp3 | 1189 | T1189T | acC | acA | 4 | 546 | AY.4 | 0.000006 |
ORF1ab/nsp3 | 1189 | T1189T | acC | acG | 1 | 546 | AY.4 | 0.000002 |
ORF1ab/nsp3 | 1189 | T1189T | acC | acT | 523 | 523 | B.1.177.80 | 1 |
ORF1ab/nsp3 | 1189 | T1189T | acC | acT | 429 | 429 | B.1.177.55 | 1 |
ORF1ab/nsp3 | 1189 | T1189T | acC | acT | 424 | 424 | B.1.177.79 | 0.992974 |
ORF1ab/nsp3 | 1189 | T1189T | acC | acT | 413 | 413 | B.1.177.53 | 0.988038 |
ORF1ab/nsp3 | 1189 | T1189T | acC | acT | 400 | 400 | B.1.177.76 | 0.997506 |
ORF1ab/nsp3 | 1189 | T1189T | acC | acT | 398 | 398 | B.1.177.30 | 1 |
ORF1ab/nsp3 | 1189 | T1189T | acC | acT | 395 | 395 | B.1.177.41 | 0.9875 |
ORF1ab/nsp3 | 1189 | T1189A | Acc | Gcc | 383 | 383 | All | 0.000073 |
ORF1ab/nsp3 | 1189 | T1189I | aCc | aTc | 377 | 377 | AY.43 | 0.00167 |
ORF1ab/nsp3 | 1189 | T1189I | aCc | aTc | 376 | 376 | AY.103 | 0.002335 |
ORF1ab/nsp3 | 1189 | T1189I | aCC | aTT | 375 | 375 | B.1.177.83 | 0.555556 |
ORF1ab/nsp3 | 1189 | T1189T | acC | acT | 370 | 370 | B.1.177.63 | 1 |
ORF1ab/nsp3 | 1189 | T1189T | acC | acT | 344 | 344 | Z.1 | 0.99422 |
ORF1ab/nsp3 | 1189 | T1189I | aCc | aTc | 305 | 305 | B.1.1.222 | 0.06222 |
ORF1ab/nsp3 | 1189 | T1189I | aCc | aTc | 304 | 304 | AY.26 | 0.008606 |
ORF1ab/nsp3 | 1189 | T1189T | acC | acT | 300 | 300 | B.1.177.23 | 0.970874 |
ORF1ab/nsp3 | 1189 | T1189T | acC | acT | 296 | 296 | B.1.177.83 | 0.438519 |
ORF1ab/nsp3 | 1189 | T1189T | acC | acT | 286 | 286 | B.1.177.72 | 0.969492 |
ORF1ab/nsp3 | 1189 | T1189T | acC | acT | 266 | 268 | B.1.1 | 0.004825 |
ORF1ab/nsp3 | 1189 | T1189T | acC | acA | 1 | 268 | B.1.1 | 0.000018 |
ORF1ab/nsp3 | 1189 | T1189T | acC | acG | 1 | 268 | B.1.1 | 0.000018 |
ORF1ab/nsp3 | 1189 | T1189I | aCc | aTc | 242 | 263 | B.1 | 0.002217 |
ORF1ab/nsp3 | 1189 | T1189I | aCC | aTT | 21 | 263 | B.1 | 0.000192 |
ORF1ab/nsp3 | 1189 | T1189T | acC | acT | 246 | 262 | B.1.617.2 | 0.000926 |
ORF1ab/nsp3 | 1189 | T1189T | acC | acA | 16 | 262 | B.1.617.2 | 0.00006 |
ORF1ab/nsp3 | 1189 | T1189T | acC | acT | 257 | 257 | U.3 | 0.992278 |
ORF1ab/nsp3 | 1189 | T1189T | acC | acT | 251 | 252 | AY.25 | 0.00151 |
ORF1ab/nsp3 | 1189 | T1189T | acC | acG | 1 | 252 | AY.25 | 0.000006 |
ORF1ab/nsp3 | 1189 | T1189I | aCc | aTc | 243 | 243 | AY.25 | 0.001462 |
ORF1ab/nsp3 | 1189 | T1189T | acC | acT | 217 | 226 | B.1.2 | 0.001911 |
ORF1ab/nsp3 | 1189 | T1189T | acC | acG | 7 | 226 | B.1.2 | 0.000062 |
ORF1ab/nsp3 | 1189 | T1189T | acC | acA | 2 | 226 | B.1.2 | 0.000018 |
ORF1ab/nsp3 | 1189 | T1189T | acC | acT | 220 | 220 | B.1.177.2 | 1 |
ORF1ab/nsp3 | 1189 | T1189T | acC | acT | 217 | 217 | B.1.177.51 | 0.990868 |
ORF1ab/nsp3 | 1189 | T1189T | acC | acT | 205 | 205 | W.2 | 0.990338 |
ORF1ab/nsp3 | 1189 | T1189T | acC | acT | 202 | 202 | B.1.177.48 | 0.63125 |
ORF1ab/nsp3 | 1189 | T1189T | acC | acT | 195 | 195 | B.1.177.50 | 0.915493 |
ORF1ab/nsp3 | 1189 | T1189T | acC | acT | 192 | 192 | B.1.177.40 | 0.989691 |
ORF1ab/nsp3 | 1189 | T1189A | Acc | Gcc | 191 | 191 | AY.4.2 | 0.004143 |
ORF1ab/nsp3 | 1189 | T1189T | acC | acT | 190 | 190 | W.3 | 1 |
ORF1ab/nsp3 | 1189 | T1189T | acC | acT | 182 | 187 | AY.43 | 0.000806 |
ORF1ab/nsp3 | 1189 | T1189T | acC | acA | 5 | 187 | AY.43 | 0.000022 |
ORF1ab/nsp3 | 1189 | T1189T | acC | acT | 183 | 183 | B.1.177.85 | 0.994565 |
ORF1ab/nsp3 | 1189 | T1189I | aCc | aTc | 180 | 181 | B.1.526 | 0.004231 |
ORF1ab/nsp3 | 1189 | T1189I | aCC | aTT | 1 | 181 | B.1.526 | 0.000024 |
ORF1ab/nsp3 | 1189 | T1189I | aCc | aTc | 180 | 180 | AY.4 | 0.00028 |
ORF1ab/nsp3 | 1189 | T1189T | acC | acT | 168 | 168 | B.1.177.70 | 0.994083 |
ORF1ab/nsp3 | 1189 | T1189T | acC | acT | 167 | 167 | B.1.160 | 0.005208 |
ORF1ab/nsp3 | 1189 | T1189I | aCC | aTT | 164 | 164 | B.1.177.14 | 1 |
ORF1ab/nsp3 | 1189 | T1189T | acC | acA | 83 | 153 | AY.44 | 0.000505 |
ORF1ab/nsp3 | 1189 | T1189T | acC | acT | 70 | 153 | AY.44 | 0.000426 |
ORF1ab/nsp3 | 1189 | T1189T | acC | acT | 143 | 143 | B.1.177.26 | 1 |
ORF1ab/nsp3 | 1189 | T1189T | acC | acT | 143 | 143 | B.1.177.84 | 0.953333 |
ORF1ab/nsp3 | 1189 | T1189I | aCc | aTc | 141 | 141 | B.1.243 | 0.009811 |
ORF1ab/nsp3 | 1189 | T1189T | acC | acT | 138 | 138 | AA.1 | 1 |
ORF1ab/nsp3 | 1189 | T1189T | acC | acT | 134 | 134 | B.1.177.28 | 0.992593 |
ORF1ab/nsp3 | 1189 | T1189T | acC | acT | 131 | 131 | B.1.177.3 | 1 |
ORF1ab/nsp3 | 1189 | T1189T | acC | acT | 130 | 130 | AA.2 | 1 |
ORF1ab/nsp3 | 1189 | T1189T | acC | acT | 126 | 130 | AY.103 | 0.000782 |
ORF1ab/nsp3 | 1189 | T1189T | acC | acA | 4 | 130 | AY.103 | 0.000025 |
ORF1ab/nsp3 | 1189 | T1189T | acC | acT | 127 | 127 | B.1.177.67 | 0.969466 |
ORF1ab/nsp3 | 1189 | T1189I | aCC | aTT | 118 | 118 | B.1.177.48 | 0.36875 |
ORF1ab/nsp3 | 1189 | T1189T | acC | acT | 114 | 114 | B.1.160.30 | 0.339286 |
ORF1ab/nsp3 | 1189 | T1189T | acC | acT | 114 | 114 | U.2 | 1 |
ORF1ab/nsp3 | 1189 | T1189T | acC | acT | 110 | 110 | AA.4 | 1 |
ORF1ab/nsp3 | 1189 | T1189T | acC | acT | 109 | 109 | AA.7 | 1 |
ORF1ab/nsp3 | 1189 | T1189T | acC | acT | 109 | 109 | W.1 | 0.947826 |
ORF1ab/nsp3 | 1189 | T1189T | acC | acT | 107 | 108 | AY.3 | 0.001064 |
ORF1ab/nsp3 | 1189 | T1189T | acC | acA | 1 | 108 | AY.3 | 0.00001 |
ORF1ab/nsp3 | 1189 | T1189T | acC | acT | 106 | 106 | B.1.177.27 | 1 |
ORF1ab/nsp3 | 1189 | T1189I | aCc | aTc | 105 | 105 | B.1.621 | 0.009295 |
ORF1ab/nsp3 | 1189 | T1189T | acC | acT | 102 | 102 | B.1.177.78 | 0.990291 |
ORF1ab/nsp3 | 1189 | T1189T | acC | acT | 99 | 99 | B.1.177.71 | 1 |
ORF1ab/nsp3 | 1189 | T1189T | acC | acT | 96 | 96 | B.1.177.38 | 1 |
ORF1ab/nsp3 | 1189 | T1189I | aCc | aTc | 89 | 89 | B.1.429 | 0.002094 |
ORF1ab/nsp3 | 1189 | T1189T | acC | acT | 87 | 87 | B.1.427 | 0.004393 |
ORF1ab/nsp3 | 1189 | T1189T | acC | acT | 86 | 87 | B.1.637 | 0.006284 |
ORF1ab/nsp3 | 1189 | T1189T | acC | acG | 1 | 87 | B.1.637 | 0.000073 |
ORF1ab/nsp3 | 1189 | T1189T | acC | acT | 84 | 84 | AY.75.1 | 0.015146 |
ORF1ab/nsp3 | 1189 | T1189T | acC | acT | 81 | 81 | B.1.177.88 | 1 |
ORF1ab/nsp3 | 1189 | T1189I | aCC | aTT | 79 | 79 | B.1.177.60 | 0.017256 |
ORF1ab/nsp3 | 1189 | T1189T | acC | acT | 78 | 78 | U.1 | 1 |
ORF1ab/nsp3 | 1189 | T1189T | acC | acT | 78 | 78 | Y.1 | 1 |
ORF1ab/nsp3 | 1189 | T1189T | acC | acT | 77 | 77 | B.1.177.47 | 1 |
ORF1ab/nsp3 | 1189 | T1189I | aCc | aTc | 76 | 76 | B.1.2 | 0.000669 |
ORF1ab/nsp3 | 1189 | T1189T | acC | acT | 74 | 76 | P.1 | 0.001166 |
ORF1ab/nsp3 | 1189 | T1189T | acC | acA | 2 | 76 | P.1 | 0.000032 |
ORF1ab/nsp3 | 1189 | T1189T | acC | acT | 70 | 73 | AY.102 | 0.001856 |
ORF1ab/nsp3 | 1189 | T1189T | acC | acA | 3 | 73 | AY.102 | 0.00008 |
ORF1ab/nsp3 | 1189 | T1189I | aCc | aTc | 72 | 72 | AY.44 | 0.000438 |
ORF1ab/nsp3 | 1189 | T1189T | acC | acT | 70 | 71 | B.1.526 | 0.001645 |
ORF1ab/nsp3 | 1189 | T1189T | acC | acG | 1 | 71 | B.1.526 | 0.000024 |
ORF1ab/nsp3 | 1189 | T1189I | aCc | aTc | 68 | 70 | P.1 | 0.001071 |
ORF1ab/nsp3 | 1189 | T1189I | aCC | aTT | 2 | 70 | P.1 | 0.000032 |
ORF1ab/nsp3 | 1189 | T1189T | acC | acT | 63 | 68 | B.1.258 | 0.004192 |
ORF1ab/nsp3 | 1189 | T1189T | acC | acA | 5 | 68 | B.1.258 | 0.000333 |
ORF1ab/nsp3 | 1189 | T1189T | acC | acT | 67 | 67 | B.1.177.25 | 1 |
ORF1ab/nsp3 | 1189 | T1189T | acC | acT | 66 | 66 | B.1.177.74 | 1 |
ORF1ab/nsp3 | 1189 | T1189T | acC | acT | 65 | 65 | B.1.177.39 | 1 |
ORF1ab/nsp3 | 1189 | T1189T | acC | acT | 65 | 65 | B.1.177.68 | 0.984848 |
ORF1ab/nsp3 | 1189 | T1189T | acC | acT | 62 | 62 | AA.5 | 1 |
ORF1ab/nsp3 | 1189 | T1189T | acC | acT | 62 | 62 | AA.6 | 1 |
ORF1ab/nsp3 | 1189 | T1189T | acC | acT | 62 | 62 | B.1.177.36 | 1 |
ORF1ab/nsp3 | 1189 | T1189T | acC | acT | 61 | 61 | B.1.177.59 | 0.983871 |
ORF1ab/nsp3 | 1189 | T1189N | aCc | aAc | 51 | 60 | All | 0.00001 |
ORF1ab/nsp3 | 1189 | T1189N | aCC | aAT | 9 | 60 | All | 0.000002 |
ORF1ab/nsp3 | 1189 | T1189A | Acc | Gcc | 60 | 60 | AY.4 | 0.000093 |
ORF1ab/nsp3 | 1189 | T1189T | acC | acT | 60 | 60 | B.1.1.519 | 0.002383 |
ORF1ab/nsp3 | 1189 | T1189I | aCc | aTc | 58 | 58 | B.1.1.316 | 0.053654 |
ORF1ab/nsp3 | 1189 | T1189T | acC | acT | 58 | 58 | B.1.1.37 | 0.011186 |
ORF1ab/nsp3 | 1189 | T1189I | aCC | aTT | 57 | 57 | B.1.177.73 | 0.032276 |
ORF1ab/nsp3 | 1189 | T1189I | aCc | aTc | 53 | 53 | AY.102 | 0.001405 |
ORF1ab/nsp3 | 1189 | T1189T | acC | acT | 52 | 52 | AY.5 | 0.001074 |
ORF1ab/nsp3 | 1189 | T1189T | acC | acT | 51 | 52 | B.1.596 | 0.004444 |
ORF1ab/nsp3 | 1189 | T1189T | acC | acG | 1 | 52 | B.1.596 | 0.000087 |
ORF1ab/nsp3 | 1189 | T1189I | aCc | aTc | 50 | 50 | AY.54 | 0.004767 |
ORF1ab/nsp3 | 1189 | T1189A | Acc | Gcc | 50 | 50 | B.1.2 | 0.00044 |
ORF1ab/nsp3 | 1189 | T1189I | aCc | aTc | 44 | 47 | B.1.1 | 0.000798 |
ORF1ab/nsp3 | 1189 | T1189I | aCC | aTT | 3 | 47 | B.1.1 | 0.000054 |
ORF1ab/nsp3 | 1189 | T1189I | aCc | aTc | 46 | 47 | C.35 | 0.035604 |
ORF1ab/nsp3 | 1189 | T1189I | aCC | aTT | 1 | 47 | C.35 | 0.000774 |
ORF1ab/nsp3 | 1189 | T1189T | acC | acT | 45 | 45 | AA.8 | 1 |
ORF1ab/nsp3 | 1189 | T1189I | aCc | aTc | 45 | 45 | AY.4.2 | 0.000976 |
ORF1ab/nsp3 | 1189 | T1189I | aCC | aTT | 45 | 45 | B.1.177.57 | 0.012644 |
ORF1ab/nsp3 | 1189 | T1189T | acC | acT | 45 | 45 | XA | 1 |
ORF1ab/nsp3 | 1189 | T1189T | acC | acT | 44 | 44 | V.1 | 1 |
ORF1ab/nsp3 | 1189 | T1189I | aCc | aTc | 42 | 43 | B.1.160 | 0.00131 |
ORF1ab/nsp3 | 1189 | T1189I | aCC | aTT | 1 | 43 | B.1.160 | 0.000031 |
ORF1ab/nsp3 | 1189 | T1189T | acC | acT | 43 | 43 | B.1.36.29 | 0.022245 |
ORF1ab/nsp3 | 1189 | T1189T | acC | acT | 40 | 42 | B.1.429 | 0.000941 |
ORF1ab/nsp3 | 1189 | T1189T | acC | acA | 2 | 42 | B.1.429 | 0.000047 |
ORF1ab/nsp3 | 1189 | T1189T | acC | acT | 41 | 41 | B.1.177.89 | 1 |
ORF1ab/nsp3 | 1189 | T1189T | acC | acT | 40 | 40 | B.1.36 | 0.005836 |
ORF1ab/nsp3 | 1189 | T1189T | acC | acT | 39 | 39 | AY.42 | 0.001569 |
ORF1ab/nsp3 | 1189 | T1189T | acC | acT | 35 | 39 | AY.47 | 0.001089 |
ORF1ab/nsp3 | 1189 | T1189T | acC | acA | 4 | 39 | AY.47 | 0.000124 |
ORF1ab/nsp3 | 1189 | T1189I | aCC | aTT | 39 | 39 | B.1.177.10 | 0.034241 |
ORF1ab/nsp3 | 1189 | T1189T | acC | acT | 39 | 39 | P.1.14 | 0.001864 |
ORF1ab/nsp3 | 1189 | T1189T | acC | acT | 38 | 38 | AY.6 | 0.001563 |
ORF1ab/nsp3 | 1189 | T1189I | aCc | aTc | 37 | 37 | AY.47 | 0.001151 |
ORF1ab/nsp3 | 1189 | T1189T | acC | acT | 37 | 37 | B.1.177.37 | 1 |
ORF1ab/nsp3 | 1189 | T1189T | acC | acT | 36 | 36 | AA.3 | 0.972973 |
ORF1ab/nsp3 | 1189 | T1189T | acC | acT | 33 | 33 | B | 0.004218 |
ORF1ab/nsp3 | 1189 | T1189T | acC | acT | 31 | 31 | N.4 | 0.131915 |
ORF1ab/nsp3 | 1189 | T1189T | acC | acT | 31 | 31 | V.2 | 1 |
ORF1ab/nsp3 | 1189 | T1189I | aCc | aTc | 30 | 30 | AY.3 | 0.000298 |
ORF1ab/nsp3 | 1189 | T1189T | acC | acT | 30 | 30 | B.1.160.20 | 0.267857 |
ORF1ab/nsp3 | 1189 | T1189T | acC | acT | 29 | 29 | B.1.1.306 | 0.012714 |
ORF1ab/nsp3 | 1189 | T1189T | acC | acT | 23 | 27 | AY.39 | 0.000568 |
ORF1ab/nsp3 | 1189 | T1189T | acC | acA | 4 | 27 | AY.39 | 0.000099 |
ORF1ab/nsp3 | 1189 | T1189I | aCc | aTc | 27 | 27 | B.1.1.519 | 0.001072 |
ORF1ab/nsp3 | 1189 | T1189T | acC | acT | 27 | 27 | B.1.177.49 | 1 |
ORF1ab/nsp3 | 1189 | T1189I | aCc | aTc | 26 | 26 | C.37 | 0.003018 |
ORF1ab/nsp3 | 1189 | T1189T | acC | acT | 26 | 26 | C.40 | 0.722222 |
ORF1ab/nsp3 | 1189 | T1189T | acC | acT | 22 | 25 | AY.39.1 | 0.000871 |
ORF1ab/nsp3 | 1189 | T1189T | acC | acA | 3 | 25 | AY.39.1 | 0.000119 |
ORF1ab/nsp3 | 1189 | T1189T | acC | acT | 25 | 25 | B.1.243 | 0.00174 |
ORF1ab/nsp3 | 1189 | T1189T | acC | acT | 24 | 24 | B.1.1.39 | 0.012232 |
ORF1ab/nsp3 | 1189 | T1189I | aCc | aTc | 24 | 24 | B.1.1.432 | 0.03038 |
ORF1ab/nsp3 | 1189 | T1189T | acC | acT | 24 | 24 | B.1.177.66 | 1 |
ORF1ab/nsp3 | 1189 | T1189I | aCc | aTc | 24 | 24 | B.1.427 | 0.001212 |
ORF1ab/nsp3 | 1189 | T1189T | acC | acT | 20 | 23 | AY.29 | 0.000315 |
ORF1ab/nsp3 | 1189 | T1189T | acC | acA | 3 | 23 | AY.29 | 0.000047 |
ORF1ab/nsp3 | 1189 | T1189T | acC | acT | 21 | 23 | B.1.258.17 | 0.002183 |
ORF1ab/nsp3 | 1189 | T1189T | acC | acA | 2 | 23 | B.1.258.17 | 0.000208 |
ORF1ab/nsp3 | 1189 | T1189del | ACC | --- | 22 | 22 | All | 0.000004 |
ORF1ab/nsp3 | 1189 | T1189T | acC | acT | 22 | 22 | B.1.177.61 | 0.956522 |
ORF1ab/nsp3 | 1189 | T1189T | acC | acT | 21 | 22 | B.1.351 | 0.000624 |
ORF1ab/nsp3 | 1189 | T1189T | acC | acA | 1 | 22 | B.1.351 | 0.00003 |
ORF1ab/nsp3 | 1189 | T1189T | acC | acT | 22 | 22 | P.2 | 0.004106 |
ORF1ab/nsp3 | 1189 | T1189I | aCc | aTc | 20 | 20 | A | 0.00774 |
ORF1ab/nsp3 | 1189 | T1189I | aCc | aTc | 20 | 20 | B.1.1.434 | 0.006971 |
ORF1ab/nsp3 | 1189 | T1189I | aCc | aTc | 19 | 20 | B.1.221 | 0.00135 |
ORF1ab/nsp3 | 1189 | T1189I | aCC | aTT | 1 | 20 | B.1.221 | 0.000071 |
ORF1ab/nsp3 | 1189 | T1189I | aCc | aTc | 20 | 20 | B.1.628 | 0.007047 |
ORF1ab/nsp3 | 1189 | T1189I | aCc | aTc | 19 | 19 | AY.5 | 0.000392 |
ORF1ab/nsp3 | 1189 | T1189I | aCc | aTc | 19 | 19 | AY.98 | 0.001501 |
ORF1ab/nsp3 | 1189 | T1189I | aCc | aTc | 19 | 19 | B.1.1.170 | 0.023691 |
ORF1ab/nsp3 | 1189 | T1189T | acC | acT | 19 | 19 | B.1.1.434 | 0.006623 |
ORF1ab/nsp3 | 1189 | T1189T | acC | acT | 19 | 19 | B.1.177.34 | 1 |
ORF1ab/nsp3 | 1189 | T1189T | acC | acT | 19 | 19 | P.1.7 | 0.006066 |
ORF1ab/nsp3 | 1189 | T1189I | aCc | aTc | 19 | 19 | P.1.7 | 0.006066 |
ORF1ab/nsp3 | 1189 | T1189I | aCc | aTc | 19 | 19 | R.1 | 0.00171 |
ORF1ab/nsp3 | 1189 | T1189T | acC | acT | 17 | 17 | AY.27 | 0.0011 |
ORF1ab/nsp3 | 1189 | T1189I | aCc | aTc | 17 | 17 | B.1.378 | 0.116438 |
ORF1ab/nsp3 | 1189 | T1189I | aCc | aTc | 16 | 16 | AY.111 | 0.00293 |
ORF1ab/nsp3 | 1189 | T1189T | acC | acT | 16 | 16 | AY.113 | 0.002278 |
ORF1ab/nsp3 | 1189 | T1189T | acC | acT | 16 | 16 | B.1.1.70 | 0.005457 |
ORF1ab/nsp3 | 1189 | T1189I | aCc | aTc | 16 | 16 | B.1.311 | 0.004393 |
ORF1ab/nsp3 | 1189 | T1189T | acC | acT | 16 | 16 | B.1.466.2 | 0.00626 |
ORF1ab/nsp3 | 1189 | T1189I | aCc | aTc | 15 | 15 | AY.42 | 0.000603 |
ORF1ab/nsp3 | 1189 | T1189T | acC | acT | 15 | 15 | AY.46.6 | 0.001083 |
ORF1ab/nsp3 | 1189 | T1189I | aCc | aTc | 14 | 14 | AY.116 | 0.004015 |
ORF1ab/nsp3 | 1189 | T1189I | aCc | aTc | 14 | 14 | AY.23 | 0.000976 |
ORF1ab/nsp3 | 1189 | T1189I | aCc | aTc | 14 | 14 | AY.4.2.1 | 0.002086 |
ORF1ab/nsp3 | 1189 | T1189T | acC | acT | 14 | 14 | B.1.1.371 | 0.145833 |
ORF1ab/nsp3 | 1189 | T1189T | acC | acT | 14 | 14 | B.1.160.32 | 0.060086 |
ORF1ab/nsp3 | 1189 | T1189T | acC | acT | 14 | 14 | B.1.177.29 | 0.933333 |
ORF1ab/nsp3 | 1189 | T1189I | aCc | aTc | 14 | 14 | P.2 | 0.002613 |
ORF1ab/nsp3 | 1189 | T1189I | aCc | aTc | 13 | 13 | AY.20 | 0.000505 |
ORF1ab/nsp3 | 1189 | T1189I | aCc | aTc | 13 | 13 | AY.33 | 0.000868 |
ORF1ab/nsp3 | 1189 | T1189T | acC | acT | 13 | 13 | AY.45 | 0.001582 |
ORF1ab/nsp3 | 1189 | T1189I | aCc | aTc | 13 | 13 | B | 0.001662 |
ORF1ab/nsp3 | 1189 | T1189T | acC | acT | 13 | 13 | B.1.36.18 | 0.005462 |
ORF1ab/nsp3 | 1189 | T1189I | aCc | aTc | 13 | 13 | P.1.14 | 0.000621 |
ORF1ab/nsp3 | 1189 | T1189T | acC | acT | 12 | 12 | AD.2 | 0.002628 |
ORF1ab/nsp3 | 1189 | T1189I | aCc | aTc | 12 | 12 | AY.118 | 0.000752 |
ORF1ab/nsp3 | 1189 | T1189I | aCc | aTc | 12 | 12 | AY.45 | 0.00146 |
ORF1ab/nsp3 | 1189 | T1189T | acC | acT | 11 | 12 | AY.46 | 0.001145 |
ORF1ab/nsp3 | 1189 | T1189T | acC | acA | 1 | 12 | AY.46 | 0.000104 |
ORF1ab/nsp3 | 1189 | T1189T | acC | acT | 12 | 12 | AY.46.2 | 0.007624 |
ORF1ab/nsp3 | 1189 | T1189T | acC | acT | 10 | 12 | AY.61 | 0.001048 |
ORF1ab/nsp3 | 1189 | T1189T | acC | acA | 2 | 12 | AY.61 | 0.00021 |
ORF1ab/nsp3 | 1189 | T1189I | aCc | aTc | 12 | 12 | AY.9 | 0.000811 |
ORF1ab/nsp3 | 1189 | T1189I | aCC | aTT | 11 | 12 | B.1.177.15 | 0.00694 |
ORF1ab/nsp3 | 1189 | T1189I | aCc | aTc | 1 | 12 | B.1.177.15 | 0.000631 |
ORF1ab/nsp3 | 1189 | T1189T | acC | acT | 10 | 11 | AY.23 | 0.000697 |
ORF1ab/nsp3 | 1189 | T1189T | acC | acA | 1 | 11 | AY.23 | 0.00007 |
ORF1ab/nsp3 | 1189 | T1189T | acC | acT | 11 | 11 | AY.85 | 0.004699 |
ORF1ab/nsp3 | 1189 | T1189T | acC | acT | 11 | 11 | B.1.1.170 | 0.013716 |
ORF1ab/nsp3 | 1189 | T1189T | acC | acT | 11 | 11 | B.1.177.31 | 0.126437 |
ORF1ab/nsp3 | 1189 | T1189T | acC | acT | 11 | 11 | B.1.177.64 | 1 |
ORF1ab/nsp3 | 1189 | T1189T | acC | acT | 11 | 11 | B.1.36.39 | 0.02439 |
ORF1ab/nsp3 | 1189 | T1189S | aCc | aGc | 6 | 10 | All | 0.000001 |
ORF1ab/nsp3 | 1189 | T1189S | Acc | Tcc | 4 | 10 | All | 0.000001 |
ORF1ab/nsp3 | 1189 | T1189T | acC | acT | 10 | 10 | AY.117 | 0.000845 |
ORF1ab/nsp3 | 1189 | T1189T | acC | acT | 10 | 10 | AY.7.1 | 0.001127 |
ORF1ab/nsp3 | 1189 | T1189I | aCc | aTc | 10 | 10 | AZ.2 | 0.00821 |
ORF1ab/nsp3 | 1189 | T1189T | acC | acT | 10 | 10 | B.1.1.161 | 0.035336 |
ORF1ab/nsp3 | 1189 | T1189I | aCc | aTc | 10 | 10 | B.1.1.297 | 0.022371 |
ORF1ab/nsp3 | 1189 | T1189T | acC | acT | 10 | 10 | B.1.218 | 0.051546 |
ORF1ab/nsp3 | 1189 | T1189I | aCc | aTc | 10 | 10 | B.1.234 | 0.001319 |
ORF1ab/nsp3 | 1189 | T1189A | Acc | Gcc | 10 | 10 | B.1.349 | 0.007148 |
ORF1ab/nsp3 | 1189 | T1189T | acC | acT | 10 | 10 | B.1.416.1 | 0.015625 |
ORF1ab/nsp3 | 1189 | T1189I | aCc | aTc | 10 | 10 | B.1.466.2 | 0.003912 |
ORF1ab/nsp3 | 1189 | T1189T | acC | acT | 10 | 10 | B.1.588 | 0.009099 |
ORF1ab/nsp3 | 1189 | T1189T | acC | acT | 9 | 9 | AY.20 | 0.00035 |
ORF1ab/nsp3 | 1189 | T1189T | acC | acT | 8 | 9 | AY.26 | 0.000226 |
ORF1ab/nsp3 | 1189 | T1189T | acC | acA | 1 | 9 | AY.26 | 0.000028 |
ORF1ab/nsp3 | 1189 | T1189I | aCc | aTc | 9 | 9 | AY.39.1 | 0.000357 |
ORF1ab/nsp3 | 1189 | T1189I | aCc | aTc | 9 | 9 | AY.46 | 0.000937 |
ORF1ab/nsp3 | 1189 | T1189T | acC | acT | 9 | 9 | AY.99.2 | 0.000829 |
ORF1ab/nsp3 | 1189 | T1189I | aCc | aTc | 9 | 9 | B.1.1.1 | 0.00294 |
ORF1ab/nsp3 | 1189 | T1189T | acC | acT | 9 | 9 | B.1.1.214 | 0.000499 |
ORF1ab/nsp3 | 1189 | T1189T | acC | acT | 9 | 9 | B.1.1.33 | 0.003788 |
ORF1ab/nsp3 | 1189 | T1189N | aCc | aAc | 9 | 9 | B.1.1.7 | 0.000008 |
ORF1ab/nsp3 | 1189 | T1189I | aCC | aTT | 8 | 9 | B.1.177.58 | 0.010652 |
ORF1ab/nsp3 | 1189 | T1189I | aCc | aTc | 1 | 9 | B.1.177.58 | 0.001332 |
ORF1ab/nsp3 | 1189 | T1189I | aCC | aTT | 8 | 9 | B.1.177.7 | 0.001319 |
ORF1ab/nsp3 | 1189 | T1189I | aCc | aTc | 1 | 9 | B.1.177.7 | 0.000165 |
ORF1ab/nsp3 | 1189 | T1189I | aCC | aTT | 9 | 9 | B.1.177.72 | 0.030508 |
ORF1ab/nsp3 | 1189 | T1189T | acC | acT | 9 | 9 | B.1.214.2 | 0.005396 |
ORF1ab/nsp3 | 1189 | T1189T | acC | acT | 9 | 9 | B.1.369 | 0.002567 |
ORF1ab/nsp3 | 1189 | T1189T | acC | acT | 9 | 9 | B.1.425 | 0.026946 |
ORF1ab/nsp3 | 1189 | T1189I | aCc | aTc | 8 | 9 | B.1.596 | 0.000697 |
ORF1ab/nsp3 | 1189 | T1189I | aCC | aTT | 1 | 9 | B.1.596 | 0.000087 |
ORF1ab/nsp3 | 1189 | T1189T | acC | acT | 9 | 9 | C.37 | 0.001045 |
ORF1ab/nsp3 | 1189 | T1189T | acC | acT | 9 | 9 | L.1 | 0.017143 |
ORF1ab/nsp3 | 1189 | T1189T | acC | acT | 9 | 9 | P.1.10 | 0.002425 |
ORF1ab/nsp3 | 1189 | T1189T | acC | acT | 9 | 9 | Q.4 | 0.004093 |
ORF1ab/nsp3 | 1189 | T1189T | acC | acT | 6 | 8 | AY.100 | 0.000276 |
ORF1ab/nsp3 | 1189 | T1189T | acC | acA | 2 | 8 | AY.100 | 0.000092 |
ORF1ab/nsp3 | 1189 | T1189T | acC | acT | 8 | 8 | AY.109 | 0.005917 |
ORF1ab/nsp3 | 1189 | T1189I | aCc | aTc | 8 | 8 | AY.117 | 0.000676 |
ORF1ab/nsp3 | 1189 | T1189T | acC | acT | 8 | 8 | AY.119 | 0.000282 |
ORF1ab/nsp3 | 1189 | T1189I | aCc | aTc | 8 | 8 | AY.27 | 0.000518 |
ORF1ab/nsp3 | 1189 | T1189I | aCc | aTc | 7 | 8 | AY.29 | 0.00011 |
ORF1ab/nsp3 | 1189 | T1189I | aCC | aTT | 1 | 8 | AY.29 | 0.000016 |
ORF1ab/nsp3 | 1189 | T1189T | acC | acT | 8 | 8 | AY.4.5 | 0.00086 |
ORF1ab/nsp3 | 1189 | T1189I | aCc | aTc | 8 | 8 | AY.6 | 0.000329 |
ORF1ab/nsp3 | 1189 | T1189T | acC | acT | 8 | 8 | AY.69 | 0.001493 |
ORF1ab/nsp3 | 1189 | T1189T | acC | acT | 8 | 8 | B.1.222 | 0.013536 |
ORF1ab/nsp3 | 1189 | T1189T | acC | acT | 8 | 8 | B.1.240 | 0.001725 |
ORF1ab/nsp3 | 1189 | T1189I | aCc | aTc | 8 | 8 | B.1.441 | 0.076923 |
ORF1ab/nsp3 | 1189 | T1189A | Acc | Gcc | 8 | 8 | B.1.617.2 | 0.00003 |
ORF1ab/nsp3 | 1189 | T1189N | aCc | aAc | 8 | 8 | B.1.621 | 0.000708 |
ORF1ab/nsp3 | 1189 | T1189T | acC | acT | 8 | 8 | B.1.621 | 0.000708 |
ORF1ab/nsp3 | 1189 | T1189T | acC | acT | 7 | 7 | A.23.1 | 0.00493 |
ORF1ab/nsp3 | 1189 | T1189I | aCc | aTc | 7 | 7 | AY.120 | 0.00026 |
ORF1ab/nsp3 | 1189 | T1189T | acC | acT | 6 | 7 | AY.120 | 0.000223 |
ORF1ab/nsp3 | 1189 | T1189T | acC | acA | 1 | 7 | AY.120 | 0.000037 |
ORF1ab/nsp3 | 1189 | T1189I | aCc | aTc | 7 | 7 | AY.16 | 0.002658 |
ORF1ab/nsp3 | 1189 | T1189A | Acc | Gcc | 7 | 7 | AY.3 | 0.00007 |
ORF1ab/nsp3 | 1189 | T1189I | aCc | aTc | 7 | 7 | AY.53 | 0.002013 |
ORF1ab/nsp3 | 1189 | T1189A | Acc | Gcc | 7 | 7 | AY.90 | 0.004791 |
ORF1ab/nsp3 | 1189 | T1189T | acC | acT | 6 | 7 | AY.98 | 0.000474 |
ORF1ab/nsp3 | 1189 | T1189T | acC | acA | 1 | 7 | AY.98 | 0.000079 |
ORF1ab/nsp3 | 1189 | T1189I | aCc | aTc | 7 | 7 | AY.98.1 | 0.000339 |
ORF1ab/nsp3 | 1189 | T1189T | acC | acT | 7 | 7 | B.1.1.1 | 0.002287 |
ORF1ab/nsp3 | 1189 | T1189I | aCc | aTc | 7 | 7 | B.1.1.216 | 0.006233 |
ORF1ab/nsp3 | 1189 | T1189T | acC | acT | 7 | 7 | B.1.1.25 | 0.00398 |
ORF1ab/nsp3 | 1189 | T1189T | acC | acT | 7 | 7 | B.1.1.28 | 0.002179 |
ORF1ab/nsp3 | 1189 | T1189I | aCc | aTc | 7 | 7 | B.1.1.284 | 0.000752 |
ORF1ab/nsp3 | 1189 | T1189T | acC | acT | 7 | 7 | B.1.1.385 | 0.03125 |
ORF1ab/nsp3 | 1189 | T1189A | Acc | Gcc | 7 | 7 | B.1.1.7 | 0.000006 |
ORF1ab/nsp3 | 1189 | T1189N | aCC | aAT | 7 | 7 | B.1.177 | 0.000092 |
ORF1ab/nsp3 | 1189 | T1189T | acC | acA | 6 | 7 | B.1.311 | 0.001647 |
ORF1ab/nsp3 | 1189 | T1189T | acC | acT | 1 | 7 | B.1.311 | 0.000275 |
ORF1ab/nsp3 | 1189 | T1189I | aCc | aTc | 7 | 7 | B.1.351 | 0.000208 |
ORF1ab/nsp3 | 1189 | T1189I | aCc | aTc | 7 | 7 | B.1.36.8 | 0.007 |
ORF1ab/nsp3 | 1189 | T1189T | acC | acT | 7 | 7 | B.1.617.1 | 0.000903 |
ORF1ab/nsp3 | 1189 | T1189T | acC | acT | 7 | 7 | B.4.1 | 0.132075 |
ORF1ab/nsp3 | 1189 | T1189I | aCc | aTc | 6 | 6 | AY.100 | 0.000276 |
ORF1ab/nsp3 | 1189 | T1189T | acC | acT | 6 | 6 | AY.116 | 0.001721 |
ORF1ab/nsp3 | 1189 | T1189I | aCc | aTc | 6 | 6 | AY.12 | 0.001896 |
ORF1ab/nsp3 | 1189 | T1189T | acC | acT | 5 | 6 | AY.33 | 0.000334 |
ORF1ab/nsp3 | 1189 | T1189T | acC | acA | 1 | 6 | AY.33 | 0.000067 |
ORF1ab/nsp3 | 1189 | T1189T | acC | acT | 6 | 6 | AY.36 | 0.000889 |
ORF1ab/nsp3 | 1189 | T1189I | aCc | aTc | 6 | 6 | AY.46.6 | 0.000433 |
ORF1ab/nsp3 | 1189 | T1189T | acC | acT | 6 | 6 | AY.49 | 0.019169 |
ORF1ab/nsp3 | 1189 | T1189I | aCc | aTc | 6 | 6 | AY.61 | 0.000629 |
ORF1ab/nsp3 | 1189 | T1189I | aCc | aTc | 6 | 6 | AY.75 | 0.000336 |
ORF1ab/nsp3 | 1189 | T1189T | acC | acT | 6 | 6 | AY.9.2 | 0.00022 |
ORF1ab/nsp3 | 1189 | T1189T | acC | acT | 6 | 6 | B.1.1.10 | 0.006689 |
ORF1ab/nsp3 | 1189 | T1189I | aCc | aTc | 6 | 6 | B.1.1.26 | 0.031414 |
ORF1ab/nsp3 | 1189 | T1189I | aCc | aTc | 5 | 6 | B.1.1.372 | 0.003444 |
ORF1ab/nsp3 | 1189 | T1189I | aCC | aTT | 1 | 6 | B.1.1.372 | 0.000689 |
ORF1ab/nsp3 | 1189 | T1189I | aCC | aTT | 5 | 6 | B.1.177.43 | 0.007386 |
ORF1ab/nsp3 | 1189 | T1189I | aCc | aTc | 1 | 6 | B.1.177.43 | 0.001477 |
ORF1ab/nsp3 | 1189 | T1189T | acC | acT | 6 | 6 | B.1.241 | 0.00487 |
ORF1ab/nsp3 | 1189 | T1189I | aCc | aTc | 6 | 6 | B.1.369 | 0.001711 |
ORF1ab/nsp3 | 1189 | T1189T | acC | acT | 6 | 6 | B.1.391 | 0.006764 |
ORF1ab/nsp3 | 1189 | T1189T | acC | acT | 6 | 6 | B.1.503 | 0.014925 |
ORF1ab/nsp3 | 1189 | T1189N | aCc | aAc | 6 | 6 | B.1.617.2 | 0.000023 |
ORF1ab/nsp3 | 1189 | T1189T | acC | acT | 6 | 6 | B.1.627 | 0.012121 |
ORF1ab/nsp3 | 1189 | T1189I | aCc | aTc | 6 | 6 | N.5 | 0.010601 |
ORF1ab/nsp3 | 1189 | T1189T | acC | acT | 6 | 6 | Q.1 | 0.000758 |
ORF1ab/nsp3 | 1189 | T1189T | acC | acT | 4 | 6 | Q.8 | 0.00066 |
ORF1ab/nsp3 | 1189 | T1189T | acC | acA | 2 | 6 | Q.8 | 0.00033 |
ORF1ab/nsp3 | 1189 | T1189T | acC | acT | 5 | 5 | AY.114 | 0.001156 |
ORF1ab/nsp3 | 1189 | T1189I | aCc | aTc | 5 | 5 | AY.119 | 0.000177 |
ORF1ab/nsp3 | 1189 | T1189T | acC | acT | 5 | 5 | AY.121 | 0.000677 |
ORF1ab/nsp3 | 1189 | T1189N | aCc | aAc | 5 | 5 | AY.3 | 0.00005 |
ORF1ab/nsp3 | 1189 | T1189T | acC | acA | 5 | 5 | AY.35 | 0.001165 |
ORF1ab/nsp3 | 1189 | T1189I | aCc | aTc | 5 | 5 | AY.36 | 0.000741 |
ORF1ab/nsp3 | 1189 | T1189T | acC | acT | 5 | 5 | AY.79 | 0.006053 |
ORF1ab/nsp3 | 1189 | T1189I | aCc | aTc | 5 | 5 | AY.99.2 | 0.000461 |
ORF1ab/nsp3 | 1189 | T1189T | acC | acT | 5 | 5 | B.1.1.315 | 0.042373 |
ORF1ab/nsp3 | 1189 | T1189I | aCc | aTc | 5 | 5 | B.1.1.318 | 0.001509 |
ORF1ab/nsp3 | 1189 | T1189I | aCc | aTc | 5 | 5 | B.1.1.33 | 0.002104 |
ORF1ab/nsp3 | 1189 | T1189I | aCc | aTc | 5 | 5 | B.1.1.39 | 0.002548 |
ORF1ab/nsp3 | 1189 | T1189I | aCC | aTT | 5 | 5 | B.1.177.44 | 0.002595 |
ORF1ab/nsp3 | 1189 | T1189T | acC | acT | 5 | 5 | B.1.221.2 | 0.02008 |
ORF1ab/nsp3 | 1189 | T1189T | acC | acT | 5 | 5 | B.1.234 | 0.00066 |
ORF1ab/nsp3 | 1189 | T1189I | aCc | aTc | 5 | 5 | B.1.258 | 0.000333 |
ORF1ab/nsp3 | 1189 | T1189I | aCc | aTc | 5 | 5 | B.1.36.29 | 0.002587 |
ORF1ab/nsp3 | 1189 | T1189T | acC | acT | 5 | 5 | B.1.577 | 0.003436 |
ORF1ab/nsp3 | 1189 | T1189T | acC | acT | 5 | 5 | B.1.609 | 0.002397 |
ORF1ab/nsp3 | 1189 | T1189T | acC | acT | 5 | 5 | C.1 | 0.011962 |
ORF1ab/nsp3 | 1189 | T1189T | acC | acT | 5 | 5 | D.2 | 0.000375 |
ORF1ab/nsp3 | 1189 | T1189T | acC | acT | 4 | 5 | P.1.15 | 0.000929 |
ORF1ab/nsp3 | 1189 | T1189T | acC | acA | 1 | 5 | P.1.15 | 0.000232 |
ORF1ab/nsp3 | 1189 | T1189T | acC | acT | 5 | 5 | Q.7 | 0.005556 |
ORF1ab/nsp3 | 1189 | T1189T | acC | acT | 4 | 4 | A.1 | 0.001127 |
ORF1ab/nsp3 | 1189 | T1189N | aCc | aAc | 3 | 4 | AY.103 | 0.000019 |
ORF1ab/nsp3 | 1189 | T1189N | aCC | aAT | 1 | 4 | AY.103 | 0.000006 |
ORF1ab/nsp3 | 1189 | T1189T | acC | acT | 3 | 4 | AY.106 | 0.001005 |
ORF1ab/nsp3 | 1189 | T1189T | acC | acA | 1 | 4 | AY.106 | 0.000335 |
ORF1ab/nsp3 | 1189 | T1189T | acC | acT | 4 | 4 | AY.110 | 0.000451 |
ORF1ab/nsp3 | 1189 | T1189I | aCc | aTc | 4 | 4 | AY.121 | 0.000541 |
ORF1ab/nsp3 | 1189 | T1189I | aCc | aTc | 4 | 4 | AY.3.1 | 0.000341 |
ORF1ab/nsp3 | 1189 | T1189T | acC | acT | 4 | 4 | AY.4.2 | 0.000087 |
ORF1ab/nsp3 | 1189 | T1189A | Acc | Gcc | 4 | 4 | AY.44 | 0.000024 |
ORF1ab/nsp3 | 1189 | T1189A | Acc | Gcc | 4 | 4 | AY.46.4 | 0.000658 |
ORF1ab/nsp3 | 1189 | T1189I | aCc | aTc | 4 | 4 | AY.55 | 0.00367 |
ORF1ab/nsp3 | 1189 | T1189I | aCc | aTc | 4 | 4 | AY.59 | 0.002119 |
ORF1ab/nsp3 | 1189 | T1189A | Acc | Gcc | 4 | 4 | AY.75 | 0.000224 |
ORF1ab/nsp3 | 1189 | T1189T | acC | acT | 4 | 4 | AY.75 | 0.000224 |
ORF1ab/nsp3 | 1189 | T1189T | acC | acA | 2 | 4 | AY.9 | 0.000135 |
ORF1ab/nsp3 | 1189 | T1189T | acC | acT | 2 | 4 | AY.9 | 0.000135 |
ORF1ab/nsp3 | 1189 | T1189I | aCc | aTc | 4 | 4 | AY.9.2 | 0.000147 |
ORF1ab/nsp3 | 1189 | T1189T | acC | acT | 4 | 4 | AY.98.1 | 0.000194 |
ORF1ab/nsp3 | 1189 | T1189T | acC | acT | 4 | 4 | B.1.1.189 | 0.006051 |
ORF1ab/nsp3 | 1189 | T1189T | acC | acT | 4 | 4 | B.1.1.216 | 0.003562 |
ORF1ab/nsp3 | 1189 | T1189T | acC | acT | 4 | 4 | B.1.1.253 | 0.010025 |
ORF1ab/nsp3 | 1189 | T1189I | aCc | aTc | 4 | 4 | B.1.1.306 | 0.001754 |
ORF1ab/nsp3 | 1189 | T1189I | aCc | aTc | 4 | 4 | B.1.1.309 | 0.023392 |
ORF1ab/nsp3 | 1189 | T1189del | ACC | --- | 4 | 4 | B.1.1.7 | 0.000004 |
ORF1ab/nsp3 | 1189 | T1189I | aCC | aTT | 4 | 4 | B.1.177.4 | 0.000844 |
ORF1ab/nsp3 | 1189 | T1189N | aCc | aAc | 4 | 4 | B.1.2 | 0.000035 |
ORF1ab/nsp3 | 1189 | T1189T | acC | acT | 4 | 4 | B.1.236 | 0.008214 |
ORF1ab/nsp3 | 1189 | T1189T | acC | acT | 4 | 4 | B.1.258.11 | 0.001585 |
ORF1ab/nsp3 | 1189 | T1189T | acC | acT | 4 | 4 | B.1.324 | 0.006421 |
ORF1ab/nsp3 | 1189 | T1189I | aCc | aTc | 4 | 4 | B.1.36 | 0.000584 |
ORF1ab/nsp3 | 1189 | T1189S | aCc | aGc | 4 | 4 | B.1.36.18 | 0.001681 |
ORF1ab/nsp3 | 1189 | T1189T | acC | acT | 4 | 4 | B.1.36.7 | 0.016 |
ORF1ab/nsp3 | 1189 | T1189I | aCc | aTc | 3 | 4 | B.1.416 | 0.003807 |
ORF1ab/nsp3 | 1189 | T1189I | aCC | aTT | 1 | 4 | B.1.416 | 0.001269 |
ORF1ab/nsp3 | 1189 | T1189T | acC | acT | 4 | 4 | B.1.509 | 0.003463 |
ORF1ab/nsp3 | 1189 | T1189T | acC | acT | 4 | 4 | B.1.538 | 0.032258 |
ORF1ab/nsp3 | 1189 | T1189T | acC | acT | 4 | 4 | B.1.561 | 0.001588 |
ORF1ab/nsp3 | 1189 | T1189I | aCc | aTc | 4 | 4 | B.1.575.1 | 0.009756 |
ORF1ab/nsp3 | 1189 | T1189T | acC | acT | 4 | 4 | B.1.595 | 0.001044 |
ORF1ab/nsp3 | 1189 | T1189T | acC | acT | 4 | 4 | B.1.621.1 | 0.002023 |
ORF1ab/nsp3 | 1189 | T1189T | acC | acT | 4 | 4 | B.1.9.4 | 0.02454 |
ORF1ab/nsp3 | 1189 | T1189I | aCc | aTc | 3 | 4 | B.1.9.4 | 0.018405 |
ORF1ab/nsp3 | 1189 | T1189I | aCC | aTT | 1 | 4 | B.1.9.4 | 0.006135 |
ORF1ab/nsp3 | 1189 | T1189I | aCc | aTc | 4 | 4 | P.6 | 0.012579 |
ORF1ab/nsp3 | 1189 | T1189I | aCc | aTc | 3 | 3 | A.1 | 0.000846 |
ORF1ab/nsp3 | 1189 | T1189del2 | ACc | --c | 3 | 3 | All | 0.000001 |
ORF1ab/nsp3 | 1189 | T1189T | acC | acT | 3 | 3 | AP.1 | 0.004505 |
ORF1ab/nsp3 | 1189 | T1189T | acC | acT | 3 | 3 | AY.101 | 0.001471 |
ORF1ab/nsp3 | 1189 | T1189I | aCc | aTc | 3 | 3 | AY.107 | 0.001398 |
ORF1ab/nsp3 | 1189 | T1189I | aCc | aTc | 3 | 3 | AY.110 | 0.000338 |
ORF1ab/nsp3 | 1189 | T1189T | acC | acT | 3 | 3 | AY.16 | 0.001139 |
ORF1ab/nsp3 | 1189 | T1189T | acC | acT | 2 | 3 | AY.16.1 | 0.00094 |
ORF1ab/nsp3 | 1189 | T1189T | acC | acA | 1 | 3 | AY.16.1 | 0.00047 |
ORF1ab/nsp3 | 1189 | T1189T | acC | acT | 3 | 3 | AY.4.2.1 | 0.000447 |
ORF1ab/nsp3 | 1189 | T1189T | acC | acT | 3 | 3 | AY.4.4 | 0.001227 |
ORF1ab/nsp3 | 1189 | T1189N | aCc | aAc | 3 | 3 | AY.43 | 0.000013 |
ORF1ab/nsp3 | 1189 | T1189T | acC | acT | 3 | 3 | AY.54 | 0.000286 |
ORF1ab/nsp3 | 1189 | T1189I | aCc | aTc | 3 | 3 | AY.63 | 0.001161 |
ORF1ab/nsp3 | 1189 | T1189T | acC | acT | 3 | 3 | AY.74 | 0.000347 |
ORF1ab/nsp3 | 1189 | T1189T | acC | acT | 3 | 3 | AY.78 | 0.004622 |
ORF1ab/nsp3 | 1189 | T1189T | acC | acT | 3 | 3 | AY.83 | 0.005172 |
ORF1ab/nsp3 | 1189 | T1189I | aCc | aTc | 3 | 3 | AY.99.1 | 0.004658 |
ORF1ab/nsp3 | 1189 | T1189I | aCc | aTc | 3 | 3 | B.1.1.189 | 0.004539 |
ORF1ab/nsp3 | 1189 | T1189T | acC | acT | 3 | 3 | B.1.1.222 | 0.000612 |
ORF1ab/nsp3 | 1189 | T1189I | aCc | aTc | 3 | 3 | B.1.1.253 | 0.007519 |
ORF1ab/nsp3 | 1189 | T1189I | aCc | aTc | 3 | 3 | B.1.1.294 | 0.003797 |
ORF1ab/nsp3 | 1189 | T1189T | acC | acT | 3 | 3 | B.1.1.372 | 0.002066 |
ORF1ab/nsp3 | 1189 | T1189I | aCc | aTc | 3 | 3 | B.1.1.397 | 0.006757 |
ORF1ab/nsp3 | 1189 | T1189T | acC | acT | 3 | 3 | B.1.1.398 | 0.009677 |
ORF1ab/nsp3 | 1189 | T1189T | acC | acT | 3 | 3 | B.1.1.416 | 0.002715 |
ORF1ab/nsp3 | 1189 | T1189T | acC | acT | 3 | 3 | B.1.1.47 | 0.016043 |
ORF1ab/nsp3 | 1189 | T1189A | Acc | Gcc | 3 | 3 | B.1.1.519 | 0.000119 |
ORF1ab/nsp3 | 1189 | T1189T | acC | acT | 3 | 3 | B.1.1.521 | 0.016043 |
ORF1ab/nsp3 | 1189 | T1189I | aCc | aTc | 3 | 3 | B.1.1.526 | 0.010638 |
ORF1ab/nsp3 | 1189 | T1189I | aCc | aTc | 3 | 3 | B.1.1.63 | 0.001157 |
ORF1ab/nsp3 | 1189 | T1189I | aCc | aTc | 3 | 3 | B.1.157 | 0.008955 |
ORF1ab/nsp3 | 1189 | T1189T | acC | acT | 3 | 3 | B.1.160.16 | 0.002788 |
ORF1ab/nsp3 | 1189 | T1189I | aCC | aTT | 3 | 3 | B.1.177.46 | 0.002755 |
ORF1ab/nsp3 | 1189 | T1189I | aCC | aTT | 3 | 3 | B.1.177.81 | 0.000568 |
ORF1ab/nsp3 | 1189 | T1189T | acC | acT | 2 | 3 | B.1.210 | 0.004264 |
ORF1ab/nsp3 | 1189 | T1189T | acC | acA | 1 | 3 | B.1.210 | 0.002132 |
ORF1ab/nsp3 | 1189 | T1189I | aCc | aTc | 3 | 3 | B.1.221.1 | 0.008721 |
ORF1ab/nsp3 | 1189 | T1189I | aCC | aTT | 2 | 3 | B.1.258.17 | 0.000208 |
ORF1ab/nsp3 | 1189 | T1189I | aCc | aTc | 1 | 3 | B.1.258.17 | 0.000104 |
ORF1ab/nsp3 | 1189 | T1189T | acC | acT | 3 | 3 | B.1.258.7 | 0.005736 |
ORF1ab/nsp3 | 1189 | T1189T | acC | acT | 3 | 3 | B.1.260 | 0.010033 |
ORF1ab/nsp3 | 1189 | T1189A | Acc | Gcc | 3 | 3 | B.1.351 | 0.000089 |
ORF1ab/nsp3 | 1189 | T1189T | acC | acT | 3 | 3 | B.1.362 | 0.004622 |
ORF1ab/nsp3 | 1189 | T1189T | acC | acT | 3 | 3 | B.1.375 | 0.002459 |
ORF1ab/nsp3 | 1189 | T1189T | acC | acT | 3 | 3 | B.1.389 | 0.003006 |
ORF1ab/nsp3 | 1189 | T1189T | acC | acT | 2 | 3 | B.1.438.1 | 0.000215 |
ORF1ab/nsp3 | 1189 | T1189T | acC | acA | 1 | 3 | B.1.438.1 | 0.000107 |
ORF1ab/nsp3 | 1189 | T1189T | acC | acT | 3 | 3 | B.1.541 | 0.013274 |
ORF1ab/nsp3 | 1189 | T1189T | acC | acT | 3 | 3 | B.1.575 | 0.00091 |
ORF1ab/nsp3 | 1189 | T1189T | acC | acT | 3 | 3 | B.1.576 | 0.00272 |
ORF1ab/nsp3 | 1189 | T1189I | aCc | aTc | 3 | 3 | B.1.617.1 | 0.000387 |
ORF1ab/nsp3 | 1189 | T1189I | aCc | aTc | 3 | 3 | B.40 | 0.001093 |
ORF1ab/nsp3 | 1189 | T1189T | acC | acT | 2 | 3 | C.36.3 | 0.001134 |
ORF1ab/nsp3 | 1189 | T1189T | acC | acA | 1 | 3 | C.36.3 | 0.000567 |
ORF1ab/nsp3 | 1189 | T1189T | acC | acT | 2 | 2 | A | 0.000774 |
ORF1ab/nsp3 | 1189 | T1189I | aCc | aTc | 2 | 2 | A.2.5.1 | 0.009615 |
ORF1ab/nsp3 | 1189 | T1189del1 | aCc | a-c | 2 | 2 | All | 0 |
ORF1ab/nsp3 | 1189 | T1189T | acC | acT | 2 | 2 | AU.2 | 0.004843 |
ORF1ab/nsp3 | 1189 | T1189I | aCc | aTc | 2 | 2 | AY.10 | 0.00106 |
ORF1ab/nsp3 | 1189 | T1189T | acC | acT | 2 | 2 | AY.111 | 0.000366 |
ORF1ab/nsp3 | 1189 | T1189T | acC | acT | 2 | 2 | AY.116.1 | 0.000623 |
ORF1ab/nsp3 | 1189 | T1189T | acC | acT | 2 | 2 | AY.118 | 0.000125 |
ORF1ab/nsp3 | 1189 | T1189T | acC | acT | 2 | 2 | AY.12 | 0.000632 |
ORF1ab/nsp3 | 1189 | T1189T | acC | acT | 2 | 2 | AY.120.2 | 0.002571 |
ORF1ab/nsp3 | 1189 | T1189I | aCc | aTc | 2 | 2 | AY.2 | 0.000712 |
ORF1ab/nsp3 | 1189 | T1189N | aCc | aAc | 2 | 2 | AY.20 | 0.000078 |
ORF1ab/nsp3 | 1189 | T1189T | acC | acT | 2 | 2 | AY.22 | 0.004184 |
ORF1ab/nsp3 | 1189 | T1189A | Acc | Gcc | 2 | 2 | AY.25 | 0.000012 |
ORF1ab/nsp3 | 1189 | T1189del | ACC | --- | 2 | 2 | AY.25 | 0.000012 |
ORF1ab/nsp3 | 1189 | T1189I | aCc | aTc | 2 | 2 | AY.28 | 0.003781 |
ORF1ab/nsp3 | 1189 | T1189I | aCc | aTc | 2 | 2 | AY.30 | 0.000791 |
ORF1ab/nsp3 | 1189 | T1189A | Acc | Gcc | 2 | 2 | AY.33 | 0.000134 |
ORF1ab/nsp3 | 1189 | T1189T | acC | acT | 2 | 2 | AY.34 | 0.000194 |
ORF1ab/nsp3 | 1189 | T1189I | aCc | aTc | 2 | 2 | AY.34.1 | 0.00102 |
ORF1ab/nsp3 | 1189 | T1189T | acC | acT | 2 | 2 | AY.38 | 0.000999 |
ORF1ab/nsp3 | 1189 | T1189I | aCc | aTc | 2 | 2 | AY.4.5 | 0.000215 |
ORF1ab/nsp3 | 1189 | T1189T | acC | acT | 2 | 2 | AY.40 | 0.001929 |
ORF1ab/nsp3 | 1189 | T1189I | aCc | aTc | 2 | 2 | AY.46.2 | 0.001271 |
ORF1ab/nsp3 | 1189 | T1189I | aCc | aTc | 2 | 2 | AY.52 | 0.001629 |
ORF1ab/nsp3 | 1189 | T1189I | aCc | aTc | 2 | 2 | AY.60 | 0.001876 |
ORF1ab/nsp3 | 1189 | T1189T | acC | acT | 2 | 2 | AY.63 | 0.000774 |
ORF1ab/nsp3 | 1189 | T1189I | aCc | aTc | 2 | 2 | AY.65 | 0.001066 |
ORF1ab/nsp3 | 1189 | T1189I | aCc | aTc | 2 | 2 | AY.71 | 0.00095 |
ORF1ab/nsp3 | 1189 | T1189T | acC | acT | 2 | 2 | AY.91 | 0.001461 |
ORF1ab/nsp3 | 1189 | T1189T | acC | acT | 2 | 2 | AY.92 | 0.000575 |
ORF1ab/nsp3 | 1189 | T1189I | aCc | aTc | 2 | 2 | AY.92 | 0.000575 |
ORF1ab/nsp3 | 1189 | T1189T | acC | acT | 2 | 2 | AY.93 | 0.000546 |
ORF1ab/nsp3 | 1189 | T1189N | aCc | aAc | 2 | 2 | B.1 | 0.000018 |
ORF1ab/nsp3 | 1189 | T1189del | ACC | --- | 2 | 2 | B.1 | 0.000018 |
ORF1ab/nsp3 | 1189 | T1189I | aCc | aTc | 2 | 2 | B.1.1.10 | 0.00223 |
ORF1ab/nsp3 | 1189 | T1189T | acC | acT | 2 | 2 | B.1.1.198 | 0.002937 |
ORF1ab/nsp3 | 1189 | T1189T | acC | acT | 2 | 2 | B.1.1.204 | 0.006079 |
ORF1ab/nsp3 | 1189 | T1189I | aCc | aTc | 2 | 2 | B.1.1.263 | 0.003115 |
ORF1ab/nsp3 | 1189 | T1189I | aCc | aTc | 2 | 2 | B.1.1.28 | 0.000622 |
ORF1ab/nsp3 | 1189 | T1189del | ACC | --- | 2 | 2 | B.1.1.315 | 0.016949 |
ORF1ab/nsp3 | 1189 | T1189A | Acc | Gcc | 2 | 2 | B.1.1.33 | 0.000842 |
ORF1ab/nsp3 | 1189 | T1189I | aCc | aTc | 2 | 2 | B.1.1.351 | 0.005587 |
ORF1ab/nsp3 | 1189 | T1189T | acC | acT | 2 | 2 | B.1.1.356 | 0.017094 |
ORF1ab/nsp3 | 1189 | T1189I | aCc | aTc | 2 | 2 | B.1.1.374 | 0.004751 |
ORF1ab/nsp3 | 1189 | T1189T | acC | acT | 2 | 2 | B.1.1.409 | 0.005666 |
ORF1ab/nsp3 | 1189 | T1189I | aCc | aTc | 2 | 2 | B.1.1.429 | 0.009217 |
ORF1ab/nsp3 | 1189 | T1189I | aCc | aTc | 2 | 2 | B.1.1.47 | 0.010695 |
ORF1ab/nsp3 | 1189 | T1189T | acC | acT | 2 | 2 | B.1.1.523 | 0.003125 |
ORF1ab/nsp3 | 1189 | T1189T | acC | acT | 2 | 2 | B.1.160.10 | 0.016129 |
ORF1ab/nsp3 | 1189 | T1189T | acC | acT | 2 | 2 | B.1.160.14 | 0.004237 |
ORF1ab/nsp3 | 1189 | T1189S | Acc | Tcc | 2 | 2 | B.1.160.16 | 0.001859 |
ORF1ab/nsp3 | 1189 | T1189T | acC | acT | 2 | 2 | B.1.160.9 | 0.014388 |
ORF1ab/nsp3 | 1189 | T1189I | aCC | aTT | 2 | 2 | B.1.177.21 | 0.000153 |
ORF1ab/nsp3 | 1189 | T1189I | aCC | aTT | 2 | 2 | B.1.177.65 | 0.001331 |
ORF1ab/nsp3 | 1189 | T1189I | aCC | aTT | 2 | 2 | B.1.177.82 | 0.000955 |
ORF1ab/nsp3 | 1189 | T1189I | aCC | aTT | 2 | 2 | B.1.177.86 | 0.000367 |
ORF1ab/nsp3 | 1189 | T1189I | aCc | aTc | 2 | 2 | B.1.22 | 0.002635 |
ORF1ab/nsp3 | 1189 | T1189N | aCc | aAc | 2 | 2 | B.1.221 | 0.000142 |
ORF1ab/nsp3 | 1189 | T1189T | acC | acT | 2 | 2 | B.1.221.1 | 0.005814 |
ORF1ab/nsp3 | 1189 | T1189T | acC | acT | 2 | 2 | B.1.223 | 0.005556 |
ORF1ab/nsp3 | 1189 | T1189I | aCc | aTc | 2 | 2 | B.1.239 | 0.002442 |
ORF1ab/nsp3 | 1189 | T1189I | aCc | aTc | 2 | 2 | B.1.315 | 0.012121 |
ORF1ab/nsp3 | 1189 | T1189T | acC | acT | 2 | 2 | B.1.329 | 0.001215 |
ORF1ab/nsp3 | 1189 | T1189I | aCc | aTc | 2 | 2 | B.1.349 | 0.00143 |
ORF1ab/nsp3 | 1189 | T1189T | acC | acT | 2 | 2 | B.1.351.5 | 0.001199 |
ORF1ab/nsp3 | 1189 | T1189I | aCc | aTc | 2 | 2 | B.1.36.19 | 0.018519 |
ORF1ab/nsp3 | 1189 | T1189T | acC | acT | 2 | 2 | B.1.36.27 | 0.001527 |
ORF1ab/nsp3 | 1189 | T1189T | acC | acT | 1 | 2 | B.1.36.35 | 0.002604 |
ORF1ab/nsp3 | 1189 | T1189T | acC | acA | 1 | 2 | B.1.36.35 | 0.002604 |
ORF1ab/nsp3 | 1189 | T1189T | acC | acT | 2 | 2 | B.1.367 | 0.001585 |
ORF1ab/nsp3 | 1189 | T1189I | aCc | aTc | 1 | 2 | B.1.389 | 0.001002 |
ORF1ab/nsp3 | 1189 | T1189I | aCC | aTT | 1 | 2 | B.1.389 | 0.001002 |
ORF1ab/nsp3 | 1189 | T1189I | aCc | aTc | 2 | 2 | B.1.396 | 0.001411 |
ORF1ab/nsp3 | 1189 | T1189T | acC | acT | 2 | 2 | B.1.397 | 0.009709 |
ORF1ab/nsp3 | 1189 | T1189T | acC | acT | 2 | 2 | B.1.416 | 0.002538 |
ORF1ab/nsp3 | 1189 | T1189T | acC | acT | 2 | 2 | B.1.424 | 0.016129 |
ORF1ab/nsp3 | 1189 | T1189T | acC | acT | 2 | 2 | B.1.462 | 0.014493 |
ORF1ab/nsp3 | 1189 | T1189I | aCc | aTc | 2 | 2 | B.1.462 | 0.014493 |
ORF1ab/nsp3 | 1189 | T1189T | acC | acT | 2 | 2 | B.1.470 | 0.002809 |
ORF1ab/nsp3 | 1189 | T1189T | acC | acT | 2 | 2 | B.1.473 | 0.038462 |
ORF1ab/nsp3 | 1189 | T1189T | acC | acT | 2 | 2 | B.1.530 | 0.014286 |
ORF1ab/nsp3 | 1189 | T1189T | acC | acT | 2 | 2 | B.1.533 | 0.019231 |
ORF1ab/nsp3 | 1189 | T1189I | aCc | aTc | 2 | 2 | B.1.540 | 0.019417 |
ORF1ab/nsp3 | 1189 | T1189I | aCc | aTc | 2 | 2 | B.1.551 | 0.002581 |
ORF1ab/nsp3 | 1189 | T1189T | acC | acT | 2 | 2 | B.1.564.1 | 0.003155 |
ORF1ab/nsp3 | 1189 | T1189T | acC | acT | 2 | 2 | B.1.580 | 0.00813 |
ORF1ab/nsp3 | 1189 | T1189T | acC | acT | 2 | 2 | B.1.582 | 0.000981 |
ORF1ab/nsp3 | 1189 | T1189I | aCc | aTc | 2 | 2 | B.1.619.1 | 0.001283 |
ORF1ab/nsp3 | 1189 | T1189T | acC | acT | 2 | 2 | B.1.619.1 | 0.001283 |
ORF1ab/nsp3 | 1189 | T1189I | aCc | aTc | 2 | 2 | B.1.623 | 0.001073 |
ORF1ab/nsp3 | 1189 | T1189T | acC | acT | 2 | 2 | B.1.628 | 0.000705 |
ORF1ab/nsp3 | 1189 | T1189I | aCc | aTc | 2 | 2 | B.1.637 | 0.000146 |
ORF1ab/nsp3 | 1189 | T1189N | aCc | aAc | 2 | 2 | B.1.637 | 0.000146 |
ORF1ab/nsp3 | 1189 | T1189T | acC | acT | 2 | 2 | B.1.91 | 0.004149 |
ORF1ab/nsp3 | 1189 | T1189I | aCc | aTc | 2 | 2 | B.23 | 0.005848 |
ORF1ab/nsp3 | 1189 | T1189I | aCc | aTc | 2 | 2 | C.16 | 0.002121 |
ORF1ab/nsp3 | 1189 | T1189T | acC | acT | 2 | 2 | C.30 | 0.003454 |
ORF1ab/nsp3 | 1189 | T1189T | acC | acT | 2 | 2 | C.36 | 0.001821 |
ORF1ab/nsp3 | 1189 | T1189I | aCc | aTc | 2 | 2 | D.2 | 0.00015 |
ORF1ab/nsp3 | 1189 | T1189T | acC | acT | 2 | 2 | K.1 | 0.047619 |
ORF1ab/nsp3 | 1189 | T1189I | aCc | aTc | 2 | 2 | P.1.1 | 0.000635 |
ORF1ab/nsp3 | 1189 | T1189I | aCc | aTc | 2 | 2 | P.1.12 | 0.000968 |
ORF1ab/nsp3 | 1189 | T1189T | acC | acT | 2 | 2 | P.1.12 | 0.000968 |
ORF1ab/nsp3 | 1189 | T1189I | aCc | aTc | 2 | 2 | P.1.15 | 0.000465 |
ORF1ab/nsp3 | 1189 | T1189I | aCc | aTc | 2 | 2 | P.1.16 | 0.000748 |
ORF1ab/nsp3 | 1189 | T1189T | acC | acT | 2 | 2 | P.1.17 | 0.000324 |
ORF1ab/nsp3 | 1189 | T1189T | acC | acT | 2 | 2 | P.7 | 0.008734 |
ORF1ab/nsp3 | 1189 | T1189I | aCc | aTc | 2 | 2 | Q.8 | 0.00033 |
ORF1ab/nsp3 | 1189 | T1189T | acC | acT | 2 | 2 | R.1 | 0.00018 |
ORF1ab/nsp3 | 1189 | T1189I | aCc | aTc | 1 | 1 | A.2 | 0.000662 |
ORF1ab/nsp3 | 1189 | T1189T | acC | acT | 1 | 1 | A.2 | 0.000662 |
ORF1ab/nsp3 | 1189 | T1189S | Acc | Tcc | 1 | 1 | A.2.4 | 0.003367 |
ORF1ab/nsp3 | 1189 | T1189T | acC | acT | 1 | 1 | A.2.5 | 0.000499 |
ORF1ab/nsp3 | 1189 | T1189A | Acc | Gcc | 1 | 1 | A.2.5 | 0.000499 |
ORF1ab/nsp3 | 1189 | T1189I | aCc | aTc | 1 | 1 | A.2.5.3 | 0.010309 |
ORF1ab/nsp3 | 1189 | T1189I | aCc | aTc | 1 | 1 | AE.8 | 0.000489 |
ORF1ab/nsp3 | 1189 | T1189T | acC | acT | 1 | 1 | AH.3 | 0.003802 |
ORF1ab/nsp3 | 1189 | T1189X | ACC | TAG | 1 | 1 | All | 0 |
ORF1ab/nsp3 | 1189 | T1189M | aCC | aTG | 1 | 1 | All | 0 |
ORF1ab/nsp3 | 1189 | T1189V | ACc | GTc | 1 | 1 | All | 0 |
ORF1ab/nsp3 | 1189 | T1189H | ACc | CAc | 1 | 1 | All | 0 |
ORF1ab/nsp3 | 1189 | T1189P | Acc | Ccc | 1 | 1 | All | 0 |
ORF1ab/nsp3 | 1189 | T1189T | acC | acT | 1 | 1 | AM.4 | 0.003571 |
ORF1ab/nsp3 | 1189 | T1189T | acC | acT | 1 | 1 | AN.1 | 0.02 |
ORF1ab/nsp3 | 1189 | T1189I | aCc | aTc | 1 | 1 | AU.1 | 0.001266 |
ORF1ab/nsp3 | 1189 | T1189T | acC | acT | 1 | 1 | AY.1 | 0.000396 |
ORF1ab/nsp3 | 1189 | T1189del | ACC | --- | 1 | 1 | AY.101 | 0.00049 |
ORF1ab/nsp3 | 1189 | T1189I | aCc | aTc | 1 | 1 | AY.101 | 0.00049 |
ORF1ab/nsp3 | 1189 | T1189A | Acc | Gcc | 1 | 1 | AY.102 | 0.000027 |
ORF1ab/nsp3 | 1189 | T1189T | acC | acT | 1 | 1 | AY.105 | 0.000643 |
ORF1ab/nsp3 | 1189 | T1189I | aCc | aTc | 1 | 1 | AY.105 | 0.000643 |
ORF1ab/nsp3 | 1189 | T1189T | acC | acT | 1 | 1 | AY.108 | 0.001103 |
ORF1ab/nsp3 | 1189 | T1189T | acC | acT | 1 | 1 | AY.11 | 0.001339 |
ORF1ab/nsp3 | 1189 | T1189I | aCc | aTc | 1 | 1 | AY.113 | 0.000142 |
ORF1ab/nsp3 | 1189 | T1189N | aCc | aAc | 1 | 1 | AY.113 | 0.000142 |
ORF1ab/nsp3 | 1189 | T1189I | aCc | aTc | 1 | 1 | AY.114 | 0.000231 |
ORF1ab/nsp3 | 1189 | T1189A | Acc | Gcc | 1 | 1 | AY.118 | 0.000063 |
ORF1ab/nsp3 | 1189 | T1189A | Acc | Gcc | 1 | 1 | AY.119 | 0.000035 |
ORF1ab/nsp3 | 1189 | T1189T | acC | acT | 1 | 1 | AY.120.2.1 | 0.000498 |
ORF1ab/nsp3 | 1189 | T1189I | aCc | aTc | 1 | 1 | AY.13 | 0.000161 |
ORF1ab/nsp3 | 1189 | T1189I | aCc | aTc | 1 | 1 | AY.14 | 0.000088 |
ORF1ab/nsp3 | 1189 | T1189T | acC | acT | 1 | 1 | AY.14 | 0.000088 |
ORF1ab/nsp3 | 1189 | T1189I | aCc | aTc | 1 | 1 | AY.16.1 | 0.00047 |
ORF1ab/nsp3 | 1189 | T1189A | Acc | Gcc | 1 | 1 | AY.20 | 0.000039 |
ORF1ab/nsp3 | 1189 | T1189T | acC | acT | 1 | 1 | AY.24 | 0.000431 |
ORF1ab/nsp3 | 1189 | T1189N | aCc | aAc | 1 | 1 | AY.25 | 0.000006 |
ORF1ab/nsp3 | 1189 | T1189A | Acc | Gcc | 1 | 1 | AY.29 | 0.000016 |
ORF1ab/nsp3 | 1189 | T1189T | acC | acT | 1 | 1 | AY.29.1 | 0.000221 |
ORF1ab/nsp3 | 1189 | T1189A | Acc | Gcc | 1 | 1 | AY.3.1 | 0.000085 |
ORF1ab/nsp3 | 1189 | T1189T | acC | acT | 1 | 1 | AY.3.1 | 0.000085 |
ORF1ab/nsp3 | 1189 | T1189I | aCc | aTc | 1 | 1 | AY.32 | 0.000532 |
ORF1ab/nsp3 | 1189 | T1189I | aCc | aTc | 1 | 1 | AY.34 | 0.000097 |
ORF1ab/nsp3 | 1189 | T1189I | aCc | aTc | 1 | 1 | AY.37 | 0.000316 |
ORF1ab/nsp3 | 1189 | T1189A | Acc | Gcc | 1 | 1 | AY.39 | 0.000025 |
ORF1ab/nsp3 | 1189 | T1189S | aCc | aGc | 1 | 1 | AY.4 | 0.000002 |
ORF1ab/nsp3 | 1189 | T1189del | ACC | --- | 1 | 1 | AY.4 | 0.000002 |
ORF1ab/nsp3 | 1189 | T1189A | Acc | Gcc | 1 | 1 | AY.42 | 0.00004 |
ORF1ab/nsp3 | 1189 | T1189del | ACC | --- | 1 | 1 | AY.43 | 0.000004 |
ORF1ab/nsp3 | 1189 | T1189del1 | aCc | a-c | 1 | 1 | AY.43 | 0.000004 |
ORF1ab/nsp3 | 1189 | T1189A | Acc | Gcc | 1 | 1 | AY.43 | 0.000004 |
ORF1ab/nsp3 | 1189 | T1189del2 | ACc | --c | 1 | 1 | AY.44 | 0.000006 |
ORF1ab/nsp3 | 1189 | T1189I | aCc | aTc | 1 | 1 | AY.46.1 | 0.001027 |
ORF1ab/nsp3 | 1189 | T1189T | acC | acT | 1 | 1 | AY.46.4 | 0.000165 |
ORF1ab/nsp3 | 1189 | T1189I | aCc | aTc | 1 | 1 | AY.46.4 | 0.000165 |
ORF1ab/nsp3 | 1189 | T1189I | aCc | aTc | 1 | 1 | AY.46.5 | 0.000198 |
ORF1ab/nsp3 | 1189 | T1189T | acC | acT | 1 | 1 | AY.46.5 | 0.000198 |
ORF1ab/nsp3 | 1189 | T1189A | Acc | Gcc | 1 | 1 | AY.47 | 0.000031 |
ORF1ab/nsp3 | 1189 | T1189A | Acc | Gcc | 1 | 1 | AY.5 | 0.000021 |
ORF1ab/nsp3 | 1189 | T1189I | aCc | aTc | 1 | 1 | AY.5.3 | 0.000337 |
ORF1ab/nsp3 | 1189 | T1189T | acC | acT | 1 | 1 | AY.5.4 | 0.000277 |
ORF1ab/nsp3 | 1189 | T1189I | aCc | aTc | 1 | 1 | AY.5.4 | 0.000277 |
ORF1ab/nsp3 | 1189 | T1189T | acC | acT | 1 | 1 | AY.51 | 0.000909 |
ORF1ab/nsp3 | 1189 | T1189T | acC | acT | 1 | 1 | AY.58 | 0.000907 |
ORF1ab/nsp3 | 1189 | T1189T | acC | acT | 1 | 1 | AY.59 | 0.00053 |
ORF1ab/nsp3 | 1189 | T1189del2 | ACc | --c | 1 | 1 | AY.61 | 0.000105 |
ORF1ab/nsp3 | 1189 | T1189I | aCc | aTc | 1 | 1 | AY.62 | 0.000436 |
ORF1ab/nsp3 | 1189 | T1189T | acC | acT | 1 | 1 | AY.64 | 0.000595 |
ORF1ab/nsp3 | 1189 | T1189I | aCc | aTc | 1 | 1 | AY.64 | 0.000595 |
ORF1ab/nsp3 | 1189 | T1189del | ACC | --- | 1 | 1 | AY.66 | 0.00107 |
ORF1ab/nsp3 | 1189 | T1189T | acC | acT | 1 | 1 | AY.67 | 0.000464 |
ORF1ab/nsp3 | 1189 | T1189I | aCc | aTc | 1 | 1 | AY.68 | 0.000274 |
ORF1ab/nsp3 | 1189 | T1189T | acC | acT | 1 | 1 | AY.68 | 0.000274 |
ORF1ab/nsp3 | 1189 | T1189I | aCc | aTc | 1 | 1 | AY.7 | 0.000196 |
ORF1ab/nsp3 | 1189 | T1189I | aCc | aTc | 1 | 1 | AY.7.1 | 0.000113 |
ORF1ab/nsp3 | 1189 | T1189A | Acc | Gcc | 1 | 1 | AY.71 | 0.000475 |
ORF1ab/nsp3 | 1189 | T1189I | aCc | aTc | 1 | 1 | AY.74 | 0.000116 |
ORF1ab/nsp3 | 1189 | T1189I | aCc | aTc | 1 | 1 | AY.75.1 | 0.00018 |
ORF1ab/nsp3 | 1189 | T1189T | acC | acT | 1 | 1 | AY.76 | 0.004831 |
ORF1ab/nsp3 | 1189 | T1189I | aCc | aTc | 1 | 1 | AY.79 | 0.001211 |
ORF1ab/nsp3 | 1189 | T1189I | aCc | aTc | 1 | 1 | AY.80 | 0.001129 |
ORF1ab/nsp3 | 1189 | T1189del | ACC | --- | 1 | 1 | AY.85 | 0.000427 |
ORF1ab/nsp3 | 1189 | T1189I | aCc | aTc | 1 | 1 | AY.87 | 0.000833 |
ORF1ab/nsp3 | 1189 | T1189I | aCc | aTc | 1 | 1 | AY.88 | 0.000884 |
ORF1ab/nsp3 | 1189 | T1189I | aCc | aTc | 1 | 1 | AY.89 | 0.004902 |
ORF1ab/nsp3 | 1189 | T1189T | acC | acT | 1 | 1 | AY.9.1 | 0.000084 |
ORF1ab/nsp3 | 1189 | T1189I | aCc | aTc | 1 | 1 | AY.90 | 0.000684 |
ORF1ab/nsp3 | 1189 | T1189T | acC | acT | 1 | 1 | AY.95 | 0.000761 |
ORF1ab/nsp3 | 1189 | T1189T | acC | acT | 1 | 1 | AZ.2.1 | 0.00813 |
ORF1ab/nsp3 | 1189 | T1189A | Acc | Gcc | 1 | 1 | B.1 | 0.000009 |
ORF1ab/nsp3 | 1189 | T1189N | aCc | aAc | 1 | 1 | B.1.1 | 0.000018 |
ORF1ab/nsp3 | 1189 | T1189del | ACC | --- | 1 | 1 | B.1.1 | 0.000018 |
ORF1ab/nsp3 | 1189 | T1189T | acC | acT | 1 | 1 | B.1.1.101 | 0.01 |
ORF1ab/nsp3 | 1189 | T1189T | acC | acT | 1 | 1 | B.1.1.12 | 0.007463 |
ORF1ab/nsp3 | 1189 | T1189I | aCc | aTc | 1 | 1 | B.1.1.121 | 0.002427 |
ORF1ab/nsp3 | 1189 | T1189I | aCc | aTc | 1 | 1 | B.1.1.128 | 0.007092 |
ORF1ab/nsp3 | 1189 | T1189T | acC | acT | 1 | 1 | B.1.1.129 | 0.009174 |
ORF1ab/nsp3 | 1189 | T1189T | acC | acT | 1 | 1 | B.1.1.13 | 0.035714 |
ORF1ab/nsp3 | 1189 | T1189I | aCc | aTc | 1 | 1 | B.1.1.133 | 0.008475 |
ORF1ab/nsp3 | 1189 | T1189I | aCc | aTc | 1 | 1 | B.1.1.135 | 0.004695 |
ORF1ab/nsp3 | 1189 | T1189T | acC | acT | 1 | 1 | B.1.1.15 | 0.013514 |
ORF1ab/nsp3 | 1189 | T1189T | acC | acT | 1 | 1 | B.1.1.153 | 0.001095 |
ORF1ab/nsp3 | 1189 | T1189T | acC | acT | 1 | 1 | B.1.1.176 | 0.000439 |
ORF1ab/nsp3 | 1189 | T1189I | aCc | aTc | 1 | 1 | B.1.1.214 | 0.000055 |
ORF1ab/nsp3 | 1189 | T1189T | acC | acT | 1 | 1 | B.1.1.228 | 0.003049 |
ORF1ab/nsp3 | 1189 | T1189I | aCc | aTc | 1 | 1 | B.1.1.228 | 0.003049 |
ORF1ab/nsp3 | 1189 | T1189T | acC | acT | 1 | 1 | B.1.1.231 | 0.003096 |
ORF1ab/nsp3 | 1189 | T1189T | acC | acT | 1 | 1 | B.1.1.234 | 0.012048 |
ORF1ab/nsp3 | 1189 | T1189T | acC | acT | 1 | 1 | B.1.1.240 | 0.004695 |
ORF1ab/nsp3 | 1189 | T1189I | aCc | aTc | 1 | 1 | B.1.1.25 | 0.000569 |
ORF1ab/nsp3 | 1189 | T1189T | acC | acT | 1 | 1 | B.1.1.255 | 0.00303 |
ORF1ab/nsp3 | 1189 | T1189I | aCc | aTc | 1 | 1 | B.1.1.274 | 0.005051 |
ORF1ab/nsp3 | 1189 | T1189T | acC | acT | 1 | 1 | B.1.1.279 | 0.001121 |
ORF1ab/nsp3 | 1189 | T1189T | acC | acT | 1 | 1 | B.1.1.294 | 0.001266 |
ORF1ab/nsp3 | 1189 | T1189I | aCc | aTc | 1 | 1 | B.1.1.301 | 0.001179 |
ORF1ab/nsp3 | 1189 | T1189T | acC | acT | 1 | 1 | B.1.1.302 | 0.002075 |
ORF1ab/nsp3 | 1189 | T1189I | aCc | aTc | 1 | 1 | B.1.1.311 | 0.000358 |
ORF1ab/nsp3 | 1189 | T1189T | acC | acT | 1 | 1 | B.1.1.311 | 0.000358 |
ORF1ab/nsp3 | 1189 | T1189T | acC | acT | 1 | 1 | B.1.1.312 | 0.001912 |
ORF1ab/nsp3 | 1189 | T1189T | acC | acA | 1 | 1 | B.1.1.316 | 0.000925 |
ORF1ab/nsp3 | 1189 | T1189T | acC | acT | 1 | 1 | B.1.1.317 | 0.000412 |
ORF1ab/nsp3 | 1189 | T1189T | acC | acT | 1 | 1 | B.1.1.318 | 0.000302 |
ORF1ab/nsp3 | 1189 | T1189I | aCc | aTc | 1 | 1 | B.1.1.322 | 0.008772 |
ORF1ab/nsp3 | 1189 | T1189I | aCc | aTc | 1 | 1 | B.1.1.347 | 0.018182 |
ORF1ab/nsp3 | 1189 | T1189del | ACC | --- | 1 | 1 | B.1.1.348 | 0.000796 |
ORF1ab/nsp3 | 1189 | T1189I | aCc | aTc | 1 | 1 | B.1.1.365 | 0.005587 |
ORF1ab/nsp3 | 1189 | T1189T | acC | acT | 1 | 1 | B.1.1.377 | 0.001381 |
ORF1ab/nsp3 | 1189 | T1189T | acC | acT | 1 | 1 | B.1.1.397 | 0.002252 |
ORF1ab/nsp3 | 1189 | T1189I | aCc | aTc | 1 | 1 | B.1.1.412 | 0.007634 |
ORF1ab/nsp3 | 1189 | T1189I | aCc | aTc | 1 | 1 | B.1.1.413 | 0.006897 |
ORF1ab/nsp3 | 1189 | T1189T | acC | acT | 1 | 1 | B.1.1.420 | 0.001006 |
ORF1ab/nsp3 | 1189 | T1189T | acC | acT | 1 | 1 | B.1.1.44 | 0.00241 |
ORF1ab/nsp3 | 1189 | T1189T | acC | acT | 1 | 1 | B.1.1.442 | 0.018519 |
ORF1ab/nsp3 | 1189 | T1189T | acC | acT | 1 | 1 | B.1.1.445 | 0.037037 |
ORF1ab/nsp3 | 1189 | T1189T | acC | acT | 1 | 1 | B.1.1.448 | 0.002033 |
ORF1ab/nsp3 | 1189 | T1189T | acC | acT | 1 | 1 | B.1.1.46 | 0.004367 |
ORF1ab/nsp3 | 1189 | T1189I | aCc | aTc | 1 | 1 | B.1.1.464 | 0.001473 |
ORF1ab/nsp3 | 1189 | T1189N | aCc | aAc | 1 | 1 | B.1.1.519 | 0.00004 |
ORF1ab/nsp3 | 1189 | T1189I | aCc | aTc | 1 | 1 | B.1.1.57 | 0.011494 |
ORF1ab/nsp3 | 1189 | T1189I | aCc | aTc | 1 | 1 | B.1.1.61 | 0.008772 |
ORF1ab/nsp3 | 1189 | T1189T | acC | acT | 1 | 1 | B.1.1.63 | 0.000386 |
ORF1ab/nsp3 | 1189 | T1189P | Acc | Ccc | 1 | 1 | B.1.1.7 | 0.000001 |
ORF1ab/nsp3 | 1189 | T1189del2 | ACc | --c | 1 | 1 | B.1.1.7 | 0.000001 |
ORF1ab/nsp3 | 1189 | T1189T | acC | acT | 1 | 1 | B.1.1.89 | 0.006061 |
ORF1ab/nsp3 | 1189 | T1189T | acC | acT | 1 | 1 | B.1.1.95 | 0.019608 |
ORF1ab/nsp3 | 1189 | T1189T | acC | acT | 1 | 1 | B.1.103 | 0.019231 |
ORF1ab/nsp3 | 1189 | T1189I | aCc | aTc | 1 | 1 | B.1.105 | 0.009615 |
ORF1ab/nsp3 | 1189 | T1189I | aCc | aTc | 1 | 1 | B.1.110 | 0.004525 |
ORF1ab/nsp3 | 1189 | T1189T | acC | acT | 1 | 1 | B.1.110.3 | 0.000718 |
ORF1ab/nsp3 | 1189 | T1189T | acC | acT | 1 | 1 | B.1.127 | 0.002198 |
ORF1ab/nsp3 | 1189 | T1189T | acC | acT | 1 | 1 | B.1.157 | 0.002985 |
ORF1ab/nsp3 | 1189 | T1189T | acC | acT | 1 | 1 | B.1.160.26 | 0.002421 |
ORF1ab/nsp3 | 1189 | T1189T | acC | acT | 1 | 1 | B.1.160.28 | 0.002924 |
ORF1ab/nsp3 | 1189 | T1189T | acC | acT | 1 | 1 | B.1.160.8 | 0.001289 |
ORF1ab/nsp3 | 1189 | T1189T | acC | acT | 1 | 1 | B.1.170 | 0.00431 |
ORF1ab/nsp3 | 1189 | T1189del | ACC | --- | 1 | 1 | B.1.177 | 0.000013 |
ORF1ab/nsp3 | 1189 | T1189I | aCC | aTT | 1 | 1 | B.1.177.12 | 0.000152 |
ORF1ab/nsp3 | 1189 | T1189I | aCC | aTT | 1 | 1 | B.1.177.18 | 0.00116 |
ORF1ab/nsp3 | 1189 | T1189I | aCC | aTT | 1 | 1 | B.1.177.24 | 0.001295 |
ORF1ab/nsp3 | 1189 | T1189I | aCC | aTT | 1 | 1 | B.1.177.40 | 0.005155 |
ORF1ab/nsp3 | 1189 | T1189I | aCC | aTT | 1 | 1 | B.1.177.51 | 0.004566 |
ORF1ab/nsp3 | 1189 | T1189I | aCC | aTT | 1 | 1 | B.1.177.53 | 0.002392 |
ORF1ab/nsp3 | 1189 | T1189I | aCC | aTT | 1 | 1 | B.1.177.56 | 0.000668 |
ORF1ab/nsp3 | 1189 | T1189del | ACC | --- | 1 | 1 | B.1.177.62 | 0.001192 |
ORF1ab/nsp3 | 1189 | T1189I | aCC | aTT | 1 | 1 | B.1.177.78 | 0.009709 |
ORF1ab/nsp3 | 1189 | T1189I | aCC | aTT | 1 | 1 | B.1.177.87 | 0.000728 |
ORF1ab/nsp3 | 1189 | T1189I | aCC | aTT | 1 | 1 | B.1.177.9 | 0.001332 |
ORF1ab/nsp3 | 1189 | T1189H | ACc | CAc | 1 | 1 | B.1.2 | 0.000009 |
ORF1ab/nsp3 | 1189 | T1189I | aCc | aTc | 1 | 1 | B.1.214 | 0.003663 |
ORF1ab/nsp3 | 1189 | T1189T | acC | acT | 1 | 1 | B.1.22 | 0.001318 |
ORF1ab/nsp3 | 1189 | T1189T | acC | acT | 1 | 1 | B.1.221.4 | 0.004167 |
ORF1ab/nsp3 | 1189 | T1189I | aCc | aTc | 1 | 1 | B.1.237 | 0.004975 |
ORF1ab/nsp3 | 1189 | T1189T | acC | acT | 1 | 1 | B.1.239 | 0.001221 |
ORF1ab/nsp3 | 1189 | T1189I | aCc | aTc | 1 | 1 | B.1.241 | 0.000812 |
ORF1ab/nsp3 | 1189 | T1189A | Acc | Gcc | 1 | 1 | B.1.258 | 0.000067 |
ORF1ab/nsp3 | 1189 | T1189T | acC | acT | 1 | 1 | B.1.268 | 0.010417 |
ORF1ab/nsp3 | 1189 | T1189T | acC | acT | 1 | 1 | B.1.281 | 0.021739 |
ORF1ab/nsp3 | 1189 | T1189T | acC | acT | 1 | 1 | B.1.284 | 0.013158 |
ORF1ab/nsp3 | 1189 | T1189T | acC | acT | 1 | 1 | B.1.293 | 0.0125 |
ORF1ab/nsp3 | 1189 | T1189A | Acc | Gcc | 1 | 1 | B.1.311 | 0.000275 |
ORF1ab/nsp3 | 1189 | T1189T | acC | acG | 1 | 1 | B.1.333 | 0.010526 |
ORF1ab/nsp3 | 1189 | T1189I | aCc | aTc | 1 | 1 | B.1.346 | 0.001311 |
ORF1ab/nsp3 | 1189 | T1189T | acC | acT | 1 | 1 | B.1.356 | 0.001727 |
ORF1ab/nsp3 | 1189 | T1189T | acC | acT | 1 | 1 | B.1.36.1 | 0.00114 |
ORF1ab/nsp3 | 1189 | T1189I | aCc | aTc | 1 | 1 | B.1.36.10 | 0.004785 |
ORF1ab/nsp3 | 1189 | T1189T | acC | acT | 1 | 1 | B.1.36.17 | 0.000494 |
ORF1ab/nsp3 | 1189 | T1189T | acC | acT | 1 | 1 | B.1.36.19 | 0.009259 |
ORF1ab/nsp3 | 1189 | T1189T | acC | acT | 1 | 1 | B.1.36.22 | 0.001208 |
ORF1ab/nsp3 | 1189 | T1189del1 | aCc | a-c | 1 | 1 | B.1.36.29 | 0.000517 |
ORF1ab/nsp3 | 1189 | T1189T | acC | acT | 1 | 1 | B.1.36.31 | 0.001751 |
ORF1ab/nsp3 | 1189 | T1189T | acC | acT | 1 | 1 | B.1.36.9 | 0.003215 |
ORF1ab/nsp3 | 1189 | T1189T | acC | acT | 1 | 1 | B.1.366 | 0.004878 |
ORF1ab/nsp3 | 1189 | T1189I | aCc | aTc | 1 | 1 | B.1.367 | 0.000792 |
ORF1ab/nsp3 | 1189 | T1189T | acC | acT | 1 | 1 | B.1.380 | 0.006623 |
ORF1ab/nsp3 | 1189 | T1189T | acC | acT | 1 | 1 | B.1.381 | 0.007812 |
ORF1ab/nsp3 | 1189 | T1189T | acC | acT | 1 | 1 | B.1.382 | 0.008929 |
ORF1ab/nsp3 | 1189 | T1189I | aCc | aTc | 1 | 1 | B.1.398 | 0.002976 |
ORF1ab/nsp3 | 1189 | T1189I | aCc | aTc | 1 | 1 | B.1.400 | 0.000429 |
ORF1ab/nsp3 | 1189 | T1189T | acC | acT | 1 | 1 | B.1.400 | 0.000429 |
ORF1ab/nsp3 | 1189 | T1189T | acC | acT | 1 | 1 | B.1.408 | 0.00369 |
ORF1ab/nsp3 | 1189 | T1189T | acC | acT | 1 | 1 | B.1.423 | 0.010204 |
ORF1ab/nsp3 | 1189 | T1189I | aCc | aTc | 1 | 1 | B.1.426 | 0.001009 |
ORF1ab/nsp3 | 1189 | T1189N | aCC | aAT | 1 | 1 | B.1.429 | 0.000024 |
ORF1ab/nsp3 | 1189 | T1189T | acC | acT | 1 | 1 | B.1.443 | 0.004673 |
ORF1ab/nsp3 | 1189 | T1189T | acC | acT | 1 | 1 | B.1.448 | 0.002625 |
ORF1ab/nsp3 | 1189 | T1189T | acC | acT | 1 | 1 | B.1.450 | 0.011364 |
ORF1ab/nsp3 | 1189 | T1189I | aCc | aTc | 1 | 1 | B.1.452 | 0.013699 |
ORF1ab/nsp3 | 1189 | T1189T | acC | acT | 1 | 1 | B.1.456 | 0.003268 |
ORF1ab/nsp3 | 1189 | T1189I | aCc | aTc | 1 | 1 | B.1.465 | 0.003802 |
ORF1ab/nsp3 | 1189 | T1189T | acC | acT | 1 | 1 | B.1.466 | 0.023256 |
ORF1ab/nsp3 | 1189 | T1189T | acC | acT | 1 | 1 | B.1.468 | 0.005714 |
ORF1ab/nsp3 | 1189 | T1189T | acC | acT | 1 | 1 | B.1.469 | 0.00361 |
ORF1ab/nsp3 | 1189 | T1189I | aCc | aTc | 1 | 1 | B.1.470 | 0.001404 |
ORF1ab/nsp3 | 1189 | T1189T | acC | acT | 1 | 1 | B.1.474 | 0.001901 |
ORF1ab/nsp3 | 1189 | T1189T | acC | acT | 1 | 1 | B.1.499 | 0.00105 |
ORF1ab/nsp3 | 1189 | T1189I | aCc | aTc | 1 | 1 | B.1.517 | 0.000427 |
ORF1ab/nsp3 | 1189 | T1189I | aCc | aTc | 1 | 1 | B.1.524 | 0.001406 |
ORF1ab/nsp3 | 1189 | T1189M | aCC | aTG | 1 | 1 | B.1.525 | 0.000113 |
ORF1ab/nsp3 | 1189 | T1189V | ACc | GTc | 1 | 1 | B.1.525 | 0.000113 |
ORF1ab/nsp3 | 1189 | T1189T | acC | acT | 1 | 1 | B.1.540 | 0.009709 |
ORF1ab/nsp3 | 1189 | T1189I | aCc | aTc | 1 | 1 | B.1.547 | 0.02439 |
ORF1ab/nsp3 | 1189 | T1189T | acC | acA | 1 | 1 | B.1.551 | 0.00129 |
ORF1ab/nsp3 | 1189 | T1189A | Acc | Gcc | 1 | 1 | B.1.564 | 0.000426 |
ORF1ab/nsp3 | 1189 | T1189I | aCc | aTc | 1 | 1 | B.1.564 | 0.000426 |
ORF1ab/nsp3 | 1189 | T1189I | aCc | aTc | 1 | 1 | B.1.567 | 0.003333 |
ORF1ab/nsp3 | 1189 | T1189T | acC | acT | 1 | 1 | B.1.575.1 | 0.002439 |
ORF1ab/nsp3 | 1189 | T1189I | aCc | aTc | 1 | 1 | B.1.577 | 0.000687 |
ORF1ab/nsp3 | 1189 | T1189I | aCc | aTc | 1 | 1 | B.1.580 | 0.004065 |
ORF1ab/nsp3 | 1189 | T1189T | acC | acT | 1 | 1 | B.1.581 | 0.009434 |
ORF1ab/nsp3 | 1189 | T1189I | aCc | aTc | 1 | 1 | B.1.585 | 0.027778 |
ORF1ab/nsp3 | 1189 | T1189I | aCC | aTT | 1 | 1 | B.1.588 | 0.00091 |
ORF1ab/nsp3 | 1189 | T1189I | aCc | aTc | 1 | 1 | B.1.595 | 0.000261 |
ORF1ab/nsp3 | 1189 | T1189T | acC | acT | 1 | 1 | B.1.599 | 0.00365 |
ORF1ab/nsp3 | 1189 | T1189T | acC | acT | 1 | 1 | B.1.600 | 0.005848 |
ORF1ab/nsp3 | 1189 | T1189I | aCc | aTc | 1 | 1 | B.1.609 | 0.000479 |
ORF1ab/nsp3 | 1189 | T1189I | aCc | aTc | 1 | 1 | B.1.621.1 | 0.000506 |
ORF1ab/nsp3 | 1189 | T1189T | acC | acT | 1 | 1 | B.1.623 | 0.000536 |
ORF1ab/nsp3 | 1189 | T1189del | ACC | --- | 1 | 1 | B.1.630 | 0.005236 |
ORF1ab/nsp3 | 1189 | T1189I | aCc | aTc | 1 | 1 | B.1.631 | 0.003367 |
ORF1ab/nsp3 | 1189 | T1189T | acC | acT | 1 | 1 | B.1.633 | 0.041667 |
ORF1ab/nsp3 | 1189 | T1189T | acC | acT | 1 | 1 | B.1.78 | 0.008547 |
ORF1ab/nsp3 | 1189 | T1189T | acC | acT | 1 | 1 | B.1.9 | 0.006173 |
ORF1ab/nsp3 | 1189 | T1189T | acC | acT | 1 | 1 | B.1.94 | 0.027027 |
ORF1ab/nsp3 | 1189 | T1189T | acC | acT | 1 | 1 | B.3 | 0.000831 |
ORF1ab/nsp3 | 1189 | T1189I | aCc | aTc | 1 | 1 | B.6 | 0.00091 |
ORF1ab/nsp3 | 1189 | T1189T | acC | acT | 1 | 1 | C.27 | 0.018519 |
ORF1ab/nsp3 | 1189 | T1189X | ACC | TAG | 1 | 1 | C.35 | 0.000774 |
ORF1ab/nsp3 | 1189 | T1189T | acC | acT | 1 | 1 | C.35 | 0.000774 |
ORF1ab/nsp3 | 1189 | T1189I | aCc | aTc | 1 | 1 | C.36 | 0.000911 |
ORF1ab/nsp3 | 1189 | T1189del | ACC | --- | 1 | 1 | C.37 | 0.000116 |
ORF1ab/nsp3 | 1189 | T1189T | acC | acT | 1 | 1 | N.9 | 0.005952 |
ORF1ab/nsp3 | 1189 | T1189S | aCc | aGc | 1 | 1 | P.1 | 0.000016 |
ORF1ab/nsp3 | 1189 | T1189del | ACC | --- | 1 | 1 | P.1 | 0.000016 |
ORF1ab/nsp3 | 1189 | T1189T | acC | acT | 1 | 1 | P.1.1 | 0.000318 |
ORF1ab/nsp3 | 1189 | T1189I | aCc | aTc | 1 | 1 | P.1.10 | 0.000269 |
ORF1ab/nsp3 | 1189 | T1189T | acC | acT | 1 | 1 | P.1.13 | 0.000898 |
ORF1ab/nsp3 | 1189 | T1189N | aCc | aAc | 1 | 1 | P.1.14 | 0.000048 |
ORF1ab/nsp3 | 1189 | T1189A | Acc | Gcc | 1 | 1 | P.1.14 | 0.000048 |
ORF1ab/nsp3 | 1189 | T1189T | acC | acT | 1 | 1 | P.1.16 | 0.000374 |
ORF1ab/nsp3 | 1189 | T1189I | aCc | aTc | 1 | 1 | P.1.17 | 0.000162 |
ORF1ab/nsp3 | 1189 | T1189T | acC | acT | 1 | 1 | P.1.2 | 0.001156 |
ORF1ab/nsp3 | 1189 | T1189I | aCc | aTc | 1 | 1 | P.1.4 | 0.000977 |
ORF1ab/nsp3 | 1189 | T1189T | acC | acT | 1 | 1 | P.1.6 | 0.001946 |
ORF1ab/nsp3 | 1189 | T1189T | acC | acA | 1 | 1 | P.1.8 | 0.004785 |
ORF1ab/nsp3 | 1189 | T1189I | aCc | aTc | 1 | 1 | P.3 | 0.001595 |
ORF1ab/nsp3 | 1189 | T1189T | acC | acT | 1 | 1 | P.3 | 0.001595 |
ORF1ab/nsp3 | 1189 | T1189I | aCc | aTc | 1 | 1 | Q.1 | 0.000126 |
ORF1ab/nsp3 | 1189 | T1189T | acC | acA | 1 | 1 | Q.3 | 0.000145 |
ORF1ab/nsp3 | 1189 | T1189S | Acc | Tcc | 1 | 1 | Q.3 | 0.000145 |
ORF1ab/nsp3 | 1189 | T1189A | Acc | Gcc | 1 | 1 | R.1 | 0.00009 |
![]() |
![]() |
CoV-GLUE is still in development. CoV-GLUE was originally developed as part of COG-UK by Josh Singer using the GLUE framework at the MRC-University of Glasgow Centre for Virus Research (CVR). In 2021 it was redeveloped by Richard Orton to scale to the millions of genome sequences available. We acknowledge support from the MRC (MC_UU_12014/12), WT (220977/Z/20/Z) and UKRI G2P (MR/W005611/1). Please contact Richard Orton with any queries: Richard.Orton@glasgow.ac.uk
|