CoV-GLUEGenomeCountriesLineagesMutationsInsertionsDeletionsUpdated:

CoV-GLUE | Mutations | Mutation

CoV-GLUE Mutation: ORF = ORF1ab/nsp3 : CodonNum = 1179

Details of the codons used for the mutation across all lineages (CodonProp is the proportion each codon is used for this AA mutation):

ORFCodonNumMutORF1abMutMutTypeRefCodonMutCodonAACountCodonCountCodonPropGenome Position
ORF1ab/nsp31179A1179VA1997VnonsyngCagTa788578580.9965766254-6256
ORF1ab/nsp31179A1179VA1997VnonsyngCAgTT7885230.002916936254-6256
ORF1ab/nsp31179A1179VA1997VnonsyngCAgTG788540.0005072926254-6256
ORF1ab/nsp31179A1179AA1997AsyngcAgcG5603060.5464296254-6256
ORF1ab/nsp31179A1179AA1997AsyngcAgcT5602330.4160716254-6256
ORF1ab/nsp31179A1179AA1997AsyngcAgcC560210.03756254-6256
ORF1ab/nsp31179A1179TA1997TnonsynGcaAca3363310.9851196254-6256
ORF1ab/nsp31179A1179TA1997TnonsynGcAAcT33630.008928576254-6256
ORF1ab/nsp31179A1179TA1997TnonsynGcAAcC33620.005952386254-6256
ORF1ab/nsp31179A1179QA1997QnonsynGCaCAa19719716254-6256
ORF1ab/nsp31179A1179SA1997SnonsynGcaTca1771710.9661026254-6256
ORF1ab/nsp31179A1179SA1997SnonsynGcATcT17740.02259896254-6256
ORF1ab/nsp31179A1179SA1997SnonsynGCAAGT17720.01129946254-6256
ORF1ab/nsp31179A1179IA1997InonsynGCAATT117610.5213686254-6256
ORF1ab/nsp31179A1179IA1997InonsynGCaATa117560.4786326254-6256
ORF1ab/nsp31179A1179LA1997LnonsynGCaTTa72570.7916676254-6256
ORF1ab/nsp31179A1179LA1997LnonsynGCATTG72100.1388896254-6256
ORF1ab/nsp31179A1179LA1997LnonsynGCaCTa7250.06944446254-6256
ORF1ab/nsp31179A1179FA1997FnonsynGCATTT676716254-6256
ORF1ab/nsp31179A1179XA1997XnonsynGCaTAa62480.7741946254-6256
ORF1ab/nsp31179A1179XA1997XnonsynGCATAG62100.161296254-6256
ORF1ab/nsp31179A1179XA1997XnonsynGCaTGa6240.06451616254-6256
ORF1ab/nsp31179A1179YA1997YnonsynGCATAT595916254-6256
ORF1ab/nsp31179A1179KA1997KnonsynGCaAAa56490.8756254-6256
ORF1ab/nsp31179A1179KA1997KnonsynGCAAAG5670.1256254-6256
ORF1ab/nsp31179A1179NA1997NnonsynGCAAAT555516254-6256
ORF1ab/nsp31179A1179delA1997deldelGCA---313116254-6256
ORF1ab/nsp31179A1179EA1997EnonsyngCagAa29250.8620696254-6256
ORF1ab/nsp31179A1179EA1997EnonsyngCAgAG2940.1379316254-6256
ORF1ab/nsp31179A1179DA1997DnonsyngCAgAT202016254-6256
ORF1ab/nsp31179A1179PA1997PnonsynGcaCca9916254-6256
ORF1ab/nsp31179A1179MA1997MnonsynGCAATG7716254-6256
ORF1ab/nsp31179A1179CA1997CnonsynGCATGT4416254-6256
ORF1ab/nsp31179A1179GA1997GnonsyngCAgGT320.6666676254-6256
ORF1ab/nsp31179A1179GA1997GnonsyngCagGa310.3333336254-6256
ORF1ab/nsp31179A1179del1A1997del1delgcAgc-2216254-6256
ORF1ab/nsp31179A1179RA1997RnonsynGCaAGa2216254-6256
ORF1ab/nsp31179A1179del2A1997del2delGCAA--210.56254-6256
ORF1ab/nsp31179A1179del2A1997del2delgCAg--210.56254-6256

Details of the mutation no within lineages (LineageCodonProp is the proportion the codon is observed at, at this particular site, on each lineage):

ORFCodonNumMutRefCodonMutCodonCodonCountAACountLineageLineageCodonProp
ORF1ab/nsp31179A1179VgCagTa78587885All0.001503
ORF1ab/nsp31179A1179VgCAgTT237885All0.000004
ORF1ab/nsp31179A1179VgCAgTG47885All0.000001
ORF1ab/nsp31179A1179VgCagTa25532578B.1.1.70.002286
ORF1ab/nsp31179A1179VgCAgTT212578B.1.1.70.000019
ORF1ab/nsp31179A1179VgCAgTG42578B.1.1.70.000004
ORF1ab/nsp31179A1179VgCagTa13091309B.1.36.270.999237
ORF1ab/nsp31179A1179AgcAgcG306560All0.000059
ORF1ab/nsp31179A1179AgcAgcT233560All0.000045
ORF1ab/nsp31179A1179AgcAgcC21560All0.000004
ORF1ab/nsp31179A1179VgCagTa488488AY.40.00076
ORF1ab/nsp31179A1179TGcaAca331336All0.000063
ORF1ab/nsp31179A1179TGcAAcT3336All0.000001
ORF1ab/nsp31179A1179TGcAAcC2336All0
ORF1ab/nsp31179A1179VgCagTa317317B.1.360.04625
ORF1ab/nsp31179A1179VgCagTa259259B.1.617.20.000975
ORF1ab/nsp31179A1179AgcAgcT119226AY.40.000185
ORF1ab/nsp31179A1179AgcAgcG106226AY.40.000165
ORF1ab/nsp31179A1179AgcAgcC1226AY.40.000002
ORF1ab/nsp31179A1179VgCagTa218218AY.860.180913
ORF1ab/nsp31179A1179VgCagTa204204AY.30.002029
ORF1ab/nsp31179A1179QGCaCAa197197All0.000038
ORF1ab/nsp31179A1179QGCaCAa195195B.1.1.70.000175
ORF1ab/nsp31179A1179VgCagTa187187AY.250.001125
ORF1ab/nsp31179A1179SGcaTca171177All0.000033
ORF1ab/nsp31179A1179SGcATcT4177All0.000001
ORF1ab/nsp31179A1179SGCAAGT2177All0
ORF1ab/nsp31179A1179VgCagTa170170B.1.4290.004
ORF1ab/nsp31179A1179VgCagTa167167AY.440.001016
ORF1ab/nsp31179A1179VgCagTa142142AY.1020.003765
ORF1ab/nsp31179A1179VgCagTa131131B.1.2790.067283
ORF1ab/nsp31179A1179VgCagTa120121B.10.001099
ORF1ab/nsp31179A1179VgCAgTT1121B.10.000009
ORF1ab/nsp31179A1179VgCagTa118118AY.430.000523
ORF1ab/nsp31179A1179IGCAATT61117All0.000012
ORF1ab/nsp31179A1179IGCaATa56117All0.000011
ORF1ab/nsp31179A1179VgCagTa113113B.1.20.000995
ORF1ab/nsp31179A1179VgCagTa109109B.1.177.120.016535
ORF1ab/nsp31179A1179IGCAATT55105B.1.1.70.000049
ORF1ab/nsp31179A1179IGCaATa50105B.1.1.70.000045
ORF1ab/nsp31179A1179VgCagTa103103AY.1030.00064
ORF1ab/nsp31179A1179AgcAgcG9696AY.46.60.006932
ORF1ab/nsp31179A1179TGcaAca9494AY.40.000146
ORF1ab/nsp31179A1179LGCaTTa5772All0.000011
ORF1ab/nsp31179A1179LGCATTG1072All0.000002
ORF1ab/nsp31179A1179LGCaCTa572All0.000001
ORF1ab/nsp31179A1179VgCagTa7272B.1.5260.001692
ORF1ab/nsp31179A1179FGCATTT6767All0.000013
ORF1ab/nsp31179A1179FGCATTT6363B.1.1.70.000056
ORF1ab/nsp31179A1179LGCaTTa5363B.1.1.70.000047
ORF1ab/nsp31179A1179LGCATTG1063B.1.1.70.000009
ORF1ab/nsp31179A1179XGCaTAa4862All0.000009
ORF1ab/nsp31179A1179XGCATAG1062All0.000002
ORF1ab/nsp31179A1179XGCaTGa462All0.000001
ORF1ab/nsp31179A1179YGCATAT5959All0.000011
ORF1ab/nsp31179A1179XGCaTAa4559B.1.1.70.00004
ORF1ab/nsp31179A1179XGCATAG1059B.1.1.70.000009
ORF1ab/nsp31179A1179XGCaTGa459B.1.1.70.000004
ORF1ab/nsp31179A1179KGCaAAa4956All0.000009
ORF1ab/nsp31179A1179KGCAAAG756All0.000001
ORF1ab/nsp31179A1179NGCAAAT5555All0.000011
ORF1ab/nsp31179A1179YGCATAT5555B.1.1.70.000049
ORF1ab/nsp31179A1179SGcaTca5353AY.920.015226
ORF1ab/nsp31179A1179KGCaAAa4451B.1.1.70.000039
ORF1ab/nsp31179A1179KGCAAAG751B.1.1.70.000006
ORF1ab/nsp31179A1179VgCagTa4949AY.290.000773
ORF1ab/nsp31179A1179NGCAAAT4949B.1.1.70.000044
ORF1ab/nsp31179A1179VgCagTa4849P.10.000756
ORF1ab/nsp31179A1179VgCAgTT149P.10.000016
ORF1ab/nsp31179A1179SGcaTca4545AY.40.00007
ORF1ab/nsp31179A1179VgCagTa4444AY.46.60.003177
ORF1ab/nsp31179A1179VgCagTa4242AY.9.20.001543
ORF1ab/nsp31179A1179AgcAgcG2940B.1.1.70.000026
ORF1ab/nsp31179A1179AgcAgcT1040B.1.1.70.000009
ORF1ab/nsp31179A1179AgcAgcC140B.1.1.70.000001
ORF1ab/nsp31179A1179TGcaAca3134B.1.1.70.000028
ORF1ab/nsp31179A1179TGcAAcT334B.1.1.70.000003
ORF1ab/nsp31179A1179VgCagTa3333AY.390.000815
ORF1ab/nsp31179A1179AgcAgcT2932AY.440.000177
ORF1ab/nsp31179A1179AgcAgcC332AY.440.000018
ORF1ab/nsp31179A1179delGCA---3131All0.000006
ORF1ab/nsp31179A1179EgCagAa2529All0.000005
ORF1ab/nsp31179A1179EgCAgAG429All0.000001
ORF1ab/nsp31179A1179TGcaAca2727B.1.4130.114894
ORF1ab/nsp31179A1179VgCagTa2626AY.50.000537
ORF1ab/nsp31179A1179VgCagTa2626B.1.10.000472
ORF1ab/nsp31179A1179TGcaAca2626B.1.5260.000611
ORF1ab/nsp31179A1179VgCagTa2525B.1.1770.000329
ORF1ab/nsp31179A1179VgCagTa2525B.1.3510.000743
ORF1ab/nsp31179A1179VgCagTa2525B.1.36.90.080386
ORF1ab/nsp31179A1179AgcAgcT1525B.1.617.20.000056
ORF1ab/nsp31179A1179AgcAgcG1025B.1.617.20.000038
ORF1ab/nsp31179A1179TGcaAca2424AY.250.000144
ORF1ab/nsp31179A1179VgCagTa2424G.11
ORF1ab/nsp31179A1179VgCagTa2323AY.99.20.00212
ORF1ab/nsp31179A1179VgCagTa2222B.1.2210.001563
ORF1ab/nsp31179A1179EgCagAa1721B.1.1.70.000015
ORF1ab/nsp31179A1179EgCAgAG421B.1.1.70.000004
ORF1ab/nsp31179A1179DgCAgAT2020All0.000004
ORF1ab/nsp31179A1179VgCagTa1919AY.98.10.00092
ORF1ab/nsp31179A1179DgCAgAT1818B.1.1.70.000016
ORF1ab/nsp31179A1179TGcaAca1717AY.1030.000106
ORF1ab/nsp31179A1179VgCagTa1717AY.330.001135
ORF1ab/nsp31179A1179TGcaAca1717B.10.000156
ORF1ab/nsp31179A1179VgCagTa1717B.1.1.4160.015385
ORF1ab/nsp31179A1179SGcaTca1016B.1.1.70.000009
ORF1ab/nsp31179A1179SGcATcT416B.1.1.70.000004
ORF1ab/nsp31179A1179SGCAAGT216B.1.1.70.000002
ORF1ab/nsp31179A1179VgCagTa1515AY.60.000617
ORF1ab/nsp31179A1179AgcAgcT1414AY.4.2.10.002086
ORF1ab/nsp31179A1179AgcAgcT1414AY.460.001457
ORF1ab/nsp31179A1179VgCagTa1414AY.470.000435
ORF1ab/nsp31179A1179TGcaAca1414B.1.1.5190.000556
ORF1ab/nsp31179A1179TGcaAca1313B.1.3110.003569
ORF1ab/nsp31179A1179TGcaAca1313B.1.617.20.000049
ORF1ab/nsp31179A1179VgCagTa1212B.1.2430.000835
ORF1ab/nsp31179A1179VgCagTa1212B.1.5360.285714
ORF1ab/nsp31179A1179AgcAgcG1111AY.1110.002015
ORF1ab/nsp31179A1179VgCagTa1111AY.4.20.000239
ORF1ab/nsp31179A1179delGCA---1111B.1.1.70.00001
ORF1ab/nsp31179A1179VgCagTa1010AY.200.000389
ORF1ab/nsp31179A1179AgcAgcT1010AY.420.000402
ORF1ab/nsp31179A1179AgcAgcG910B.1.1770.000119
ORF1ab/nsp31179A1179AgcAgcT110B.1.1770.000013
ORF1ab/nsp31179A1179VgCagTa1010B.1.177.320.013495
ORF1ab/nsp31179A1179SGcaTca1010B.1.5260.000235
ORF1ab/nsp31179A1179VgCagTa99A0.003483
ORF1ab/nsp31179A1179VgCagTa99A.2.50.004491
ORF1ab/nsp31179A1179VgCagTa99AD.20.001971
ORF1ab/nsp31179A1179PGcaCca99All0.000002
ORF1ab/nsp31179A1179TGcaAca99AY.260.000255
ORF1ab/nsp31179A1179VgCagTa99AY.46.20.005718
ORF1ab/nsp31179A1179VgCagTa99AY.46.40.001481
ORF1ab/nsp31179A1179VgCagTa99B.1.1.5190.000357
ORF1ab/nsp31179A1179AgcAgcG99B.1.360.001313
ORF1ab/nsp31179A1179VgCagTa99B.550.026549
ORF1ab/nsp31179A1179SGcaTca99P.10.000142
ORF1ab/nsp31179A1179VgCagTa88AY.1190.000282
ORF1ab/nsp31179A1179AgcAgcG88AY.250.000048
ORF1ab/nsp31179A1179AgcAgcG78AY.30.00007
ORF1ab/nsp31179A1179AgcAgcT18AY.30.00001
ORF1ab/nsp31179A1179VgCagTa88AY.410.002352
ORF1ab/nsp31179A1179TGcaAca78AY.430.000031
ORF1ab/nsp31179A1179TGcAAcC18AY.430.000004
ORF1ab/nsp31179A1179VgCagTa88B.1.1600.00025
ORF1ab/nsp31179A1179VgCagTa88B.1.177.620.009535
ORF1ab/nsp31179A1179VgCagTa88B.1.177.810.001515
ORF1ab/nsp31179A1179VgCagTa88B.1.4270.000404
ORF1ab/nsp31179A1179MGCAATG77All0.000001
ORF1ab/nsp31179A1179VgCagTa77AY.1000.000322
ORF1ab/nsp31179A1179VgCagTa77AY.230.000488
ORF1ab/nsp31179A1179VgCagTa77AY.260.000198
ORF1ab/nsp31179A1179VgCagTa77AY.39.10.000277
ORF1ab/nsp31179A1179VgCagTa77B.1.1.390.003568
ORF1ab/nsp31179A1179MGCAATG77B.1.1.70.000006
ORF1ab/nsp31179A1179VgCagTa77C.370.000812
ORF1ab/nsp31179A1179VgCagTa77Q.10.000884
ORF1ab/nsp31179A1179AgcAgcC66AY.1180.000376
ORF1ab/nsp31179A1179VgCagTa66AY.360.000889
ORF1ab/nsp31179A1179SGcaTca66AY.450.00073
ORF1ab/nsp31179A1179VgCagTa66AY.460.000624
ORF1ab/nsp31179A1179VgCagTa66B.1.1.1380.036364
ORF1ab/nsp31179A1179TGcaAca66B.1.177.600.001311
ORF1ab/nsp31179A1179AgcAgcT66B.1.177.820.002864
ORF1ab/nsp31179A1179VgCagTa66B.1.2580.000399
ORF1ab/nsp31179A1179VgCagTa66C.350.004644
ORF1ab/nsp31179A1179VgCagTa66D.20.00045
ORF1ab/nsp31179A1179VgCagTa66P.1.140.000287
ORF1ab/nsp31179A1179VgCagTa66P.20.00112
ORF1ab/nsp31179A1179VgCagTa55A.2.5.20.007862
ORF1ab/nsp31179A1179VgCagTa55AY.1170.000423
ORF1ab/nsp31179A1179AgcAgcG55AY.290.000079
ORF1ab/nsp31179A1179VgCagTa55AY.4.50.000537
ORF1ab/nsp31179A1179TGcaAca55AY.440.00003
ORF1ab/nsp31179A1179VgCagTa55AY.510.004545
ORF1ab/nsp31179A1179VgCagTa55AY.850.002136
ORF1ab/nsp31179A1179VgCagTa55B0.000639
ORF1ab/nsp31179A1179SGcaTca55B.10.000046
ORF1ab/nsp31179A1179VgCagTa55B.1.1.3170.002058
ORF1ab/nsp31179A1179VgCagTa55B.1.1.4200.00503
ORF1ab/nsp31179A1179AgcAgcC45B.1.20.000035
ORF1ab/nsp31179A1179AgcAgcG15B.1.20.000009
ORF1ab/nsp31179A1179LGCaCTa55B.1.4290.000118
ORF1ab/nsp31179A1179CGCATGT44All0.000001
ORF1ab/nsp31179A1179VgCagTa44AY.1010.001962
ORF1ab/nsp31179A1179TGcaAca44AY.1020.000106
ORF1ab/nsp31179A1179VgCagTa44AY.1130.00057
ORF1ab/nsp31179A1179VgCagTa44AY.340.000388
ORF1ab/nsp31179A1179AgcAgcG44AY.390.000099
ORF1ab/nsp31179A1179VgCagTa44AY.4.30.003367
ORF1ab/nsp31179A1179VgCagTa44AY.420.000161
ORF1ab/nsp31179A1179VgCagTa44AY.650.002132
ORF1ab/nsp31179A1179VgCagTa44AY.7.10.000451
ORF1ab/nsp31179A1179VgCagTa44AY.840.00175
ORF1ab/nsp31179A1179VgCagTa44AY.980.000316
ORF1ab/nsp31179A1179IGCAATT24B.10.000018
ORF1ab/nsp31179A1179AgcAgcT24B.10.000018
ORF1ab/nsp31179A1179AgcAgcG24B.10.000018
ORF1ab/nsp31179A1179IGCaATa24B.10.000018
ORF1ab/nsp31179A1179VgCagTa44B.1.1.2310.012384
ORF1ab/nsp31179A1179VgCagTa44B.1.1.330.001684
ORF1ab/nsp31179A1179CGCATGT44B.1.1.70.000004
ORF1ab/nsp31179A1179VgCagTa44B.1.177.830.005926
ORF1ab/nsp31179A1179VgCagTa44B.1.3610.005155
ORF1ab/nsp31179A1179VgCagTa44B.1.4680.022857
ORF1ab/nsp31179A1179VgCagTa44B.1.5660.076923
ORF1ab/nsp31179A1179SGcaTca44B.1.617.20.000015
ORF1ab/nsp31179A1179VgCagTa44B.1.6370.000292
ORF1ab/nsp31179A1179IGCAATT24P.10.000032
ORF1ab/nsp31179A1179IGCaATa24P.10.000032
ORF1ab/nsp31179A1179VgCagTa44Q.30.00058
ORF1ab/nsp31179A1179GgCAgGT23All0
ORF1ab/nsp31179A1179GgCagGa13All0
ORF1ab/nsp31179A1179VgCagTa33AY.1050.001929
ORF1ab/nsp31179A1179VgCagTa33AY.1160.00086
ORF1ab/nsp31179A1179VgCagTa33AY.1180.000188
ORF1ab/nsp31179A1179VgCagTa33AY.1200.000112
ORF1ab/nsp31179A1179VgCagTa33AY.130.000483
ORF1ab/nsp31179A1179delGCA---33AY.250.000018
ORF1ab/nsp31179A1179VgCagTa33AY.29.10.000662
ORF1ab/nsp31179A1179VgCagTa33AY.350.000699
ORF1ab/nsp31179A1179TGcaAca33AY.390.000074
ORF1ab/nsp31179A1179VgCagTa33AY.610.000314
ORF1ab/nsp31179A1179VgCagTa33AY.930.000819
ORF1ab/nsp31179A1179VgCagTa33B.1.1.10.00098
ORF1ab/nsp31179A1179VgCagTa33B.1.1.1410.006036
ORF1ab/nsp31179A1179VgCagTa33B.1.1.2160.002671
ORF1ab/nsp31179A1179VgCagTa33B.1.1.2220.000612
ORF1ab/nsp31179A1179GgCAgGT23B.1.1.70.000002
ORF1ab/nsp31179A1179GgCagGa13B.1.1.70.000001
ORF1ab/nsp31179A1179VgCagTa33B.1.1390.002199
ORF1ab/nsp31179A1179VgCagTa33B.1.177.210.000229
ORF1ab/nsp31179A1179VgCagTa33B.1.177.570.000843
ORF1ab/nsp31179A1179VgCagTa33B.1.22.10.09375
ORF1ab/nsp31179A1179VgCagTa33B.1.2340.000396
ORF1ab/nsp31179A1179VgCagTa33B.1.2400.000647
ORF1ab/nsp31179A1179VgCagTa33B.1.258.170.000312
ORF1ab/nsp31179A1179VgCagTa33B.1.2600.010033
ORF1ab/nsp31179A1179VgCagTa33B.1.3620.004622
ORF1ab/nsp31179A1179VgCagTa33B.1.3810.023438
ORF1ab/nsp31179A1179VgCagTa33B.1.438.10.000322
ORF1ab/nsp31179A1179VgCagTa33B.1.466.20.001174
ORF1ab/nsp31179A1179VgCagTa33B.1.617.10.000387
ORF1ab/nsp31179A1179VgCagTa33C.140.012987
ORF1ab/nsp31179A1179VgCagTa33P.1.150.000697
ORF1ab/nsp31179A1179RGCaAGa22All0
ORF1ab/nsp31179A1179del1gcAgc-22All0
ORF1ab/nsp31179A1179del2gCAg--12All0
ORF1ab/nsp31179A1179del2GCAA--12All0
ORF1ab/nsp31179A1179AgcAgcG22AY.1010.000981
ORF1ab/nsp31179A1179SGcaTca22AY.1180.000125
ORF1ab/nsp31179A1179IGCaATa12AY.250.000006
ORF1ab/nsp31179A1179IGCAATT12AY.250.000006
ORF1ab/nsp31179A1179VgCagTa22AY.270.000129
ORF1ab/nsp31179A1179TGcaAca22AY.330.000134
ORF1ab/nsp31179A1179TGcaAca22AY.360.000296
ORF1ab/nsp31179A1179AgcAgcC22AY.430.000009
ORF1ab/nsp31179A1179delGCA---22AY.430.000009
ORF1ab/nsp31179A1179VgCagTa22AY.5.30.000675
ORF1ab/nsp31179A1179VgCagTa22AY.5.40.000553
ORF1ab/nsp31179A1179VgCagTa22AY.760.009662
ORF1ab/nsp31179A1179NGCAAAT22B.10.000018
ORF1ab/nsp31179A1179KGCaAAa22B.10.000018
ORF1ab/nsp31179A1179delGCA---22B.10.000018
ORF1ab/nsp31179A1179EgCagAa22B.10.000018
ORF1ab/nsp31179A1179delGCA---22B.1.10.000036
ORF1ab/nsp31179A1179AgcAgcT22B.1.10.000036
ORF1ab/nsp31179A1179VgCagTa22B.1.1.280.000622
ORF1ab/nsp31179A1179VgCagTa22B.1.1.4340.000697
ORF1ab/nsp31179A1179VgCagTa22B.1.1.500.001358
ORF1ab/nsp31179A1179RGCaAGa22B.1.1.70.000002
ORF1ab/nsp31179A1179VgCagTa22B.1.1.830.00542
ORF1ab/nsp31179A1179VgCagTa22B.1.177.440.001038
ORF1ab/nsp31179A1179VgCagTa22B.1.177.70.00033
ORF1ab/nsp31179A1179VgCagTa22B.1.221.10.005814
ORF1ab/nsp31179A1179VgCagTa22B.1.3110.000549
ORF1ab/nsp31179A1179VgCagTa22B.1.36.100.009569
ORF1ab/nsp31179A1179VgCagTa22B.1.36.160.002849
ORF1ab/nsp31179A1179VgCagTa22B.1.36.390.004435
ORF1ab/nsp31179A1179VgCagTa22B.1.416.10.003125
ORF1ab/nsp31179A1179TGcaAca22B.1.4290.000047
ORF1ab/nsp31179A1179VgCagTa22B.1.5250.000226
ORF1ab/nsp31179A1179SGcaTca22B.1.5250.000226
ORF1ab/nsp31179A1179TGcaAca22B.1.5960.000174
ORF1ab/nsp31179A1179VgCagTa22B.1.6090.000959
ORF1ab/nsp31179A1179VgCagTa22C.260.014706
ORF1ab/nsp31179A1179VgCagTa22C.360.001821
ORF1ab/nsp31179A1179VgCagTa22C.36.30.001134
ORF1ab/nsp31179A1179SGcaTca22D.20.00015
ORF1ab/nsp31179A1179PGcaCca22D.20.00015
ORF1ab/nsp31179A1179KGCaAAa22P.10.000032
ORF1ab/nsp31179A1179QGCaCAa22P.10.000032
ORF1ab/nsp31179A1179TGcaAca22P.10.000032
ORF1ab/nsp31179A1179NGCAAAT22P.10.000032
ORF1ab/nsp31179A1179VgCagTa22P.1.10.000635
ORF1ab/nsp31179A1179VgCagTa22P.1.170.000324
ORF1ab/nsp31179A1179VgCagTa22P.1.70.000639
ORF1ab/nsp31179A1179VgCagTa22P.70.008734
ORF1ab/nsp31179A1179VgCagTa22Q.80.00033
ORF1ab/nsp31179A1179VgCagTa22R.10.00018
ORF1ab/nsp31179A1179VgCagTa11AY.10.000396
ORF1ab/nsp31179A1179TGcaAca11AY.1000.000046
ORF1ab/nsp31179A1179AgcAgcT11AY.1000.000046
ORF1ab/nsp31179A1179AgcAgcG11AY.1020.000027
ORF1ab/nsp31179A1179EgCagAa11AY.1030.000006
ORF1ab/nsp31179A1179AgcAgcG11AY.1030.000006
ORF1ab/nsp31179A1179SGcaTca11AY.1040.001984
ORF1ab/nsp31179A1179VgCagTa11AY.1100.000113
ORF1ab/nsp31179A1179VgCagTa11AY.1110.000183
ORF1ab/nsp31179A1179VgCagTa11AY.116.10.000311
ORF1ab/nsp31179A1179AgcAgcC11AY.120.000316
ORF1ab/nsp31179A1179AgcAgcG11AY.1200.000037
ORF1ab/nsp31179A1179VgCagTa11AY.120.10.000321
ORF1ab/nsp31179A1179TGcaAca11AY.1210.000135
ORF1ab/nsp31179A1179SGcaTca11AY.190.00114
ORF1ab/nsp31179A1179SGcaTca11AY.230.00007
ORF1ab/nsp31179A1179PGcaCca11AY.230.00007
ORF1ab/nsp31179A1179VgCagTa11AY.240.000431
ORF1ab/nsp31179A1179LGCaTTa11AY.250.000006
ORF1ab/nsp31179A1179NGCAAAT11AY.250.000006
ORF1ab/nsp31179A1179XGCaTAa11AY.250.000006
ORF1ab/nsp31179A1179YGCATAT11AY.250.000006
ORF1ab/nsp31179A1179FGCATTT11AY.250.000006
ORF1ab/nsp31179A1179KGCaAAa11AY.250.000006
ORF1ab/nsp31179A1179SGcaTca11AY.290.000016
ORF1ab/nsp31179A1179TGcaAca11AY.30.00001
ORF1ab/nsp31179A1179AgcAgcT11AY.300.000396
ORF1ab/nsp31179A1179VgCagTa11AY.300.000396
ORF1ab/nsp31179A1179SGcaTca11AY.330.000067
ORF1ab/nsp31179A1179AgcAgcG11AY.330.000067
ORF1ab/nsp31179A1179VgCagTa11AY.34.10.00051
ORF1ab/nsp31179A1179SGcaTca11AY.39.10.00004
ORF1ab/nsp31179A1179delGCA---11AY.40.000002
ORF1ab/nsp31179A1179PGcaCca11AY.40.000002
ORF1ab/nsp31179A1179EgCagAa11AY.40.000002
ORF1ab/nsp31179A1179VgCagTa11AY.4.2.10.000149
ORF1ab/nsp31179A1179VgCagTa11AY.4.40.000409
ORF1ab/nsp31179A1179TGcaAca11AY.420.00004
ORF1ab/nsp31179A1179SGcaTca11AY.430.000004
ORF1ab/nsp31179A1179SGcaTca11AY.460.000104
ORF1ab/nsp31179A1179delGCA---11AY.5.30.000337
ORF1ab/nsp31179A1179AgcAgcC11AY.530.000288
ORF1ab/nsp31179A1179VgCagTa11AY.570.000656
ORF1ab/nsp31179A1179delGCA---11AY.610.000105
ORF1ab/nsp31179A1179delGCA---11AY.660.00107
ORF1ab/nsp31179A1179VgCagTa11AY.680.000274
ORF1ab/nsp31179A1179VgCagTa11AY.700.000209
ORF1ab/nsp31179A1179VgCagTa11AY.710.000475
ORF1ab/nsp31179A1179VgCagTa11AY.730.000665
ORF1ab/nsp31179A1179VgCagTa11AY.750.000056
ORF1ab/nsp31179A1179VgCagTa11AY.80.000606
ORF1ab/nsp31179A1179delGCA---11AY.850.000427
ORF1ab/nsp31179A1179VgCagTa11AY.880.000884
ORF1ab/nsp31179A1179VgCagTa11AY.90.000068
ORF1ab/nsp31179A1179VgCagTa11AY.9.10.000084
ORF1ab/nsp31179A1179VgCagTa11AY.920.000287
ORF1ab/nsp31179A1179VgCagTa11AY.940.000443
ORF1ab/nsp31179A1179AgcAgcT11AY.98.10.000048
ORF1ab/nsp31179A1179TGcaAca11B0.000128
ORF1ab/nsp31179A1179del2GCAA--11B.10.000009
ORF1ab/nsp31179A1179DgCAgAT11B.10.000009
ORF1ab/nsp31179A1179FGCATTT11B.10.000009
ORF1ab/nsp31179A1179XGCaTAa11B.10.000009
ORF1ab/nsp31179A1179LGCaTTa11B.10.000009
ORF1ab/nsp31179A1179PGcaCca11B.10.000009
ORF1ab/nsp31179A1179YGCATAT11B.10.000009
ORF1ab/nsp31179A1179PGcaCca11B.1.10.000018
ORF1ab/nsp31179A1179EgCagAa11B.1.10.000018
ORF1ab/nsp31179A1179VgCagTa11B.1.1.100.001115
ORF1ab/nsp31179A1179VgCagTa11B.1.1.1170.009709
ORF1ab/nsp31179A1179VgCagTa11B.1.1.1960.005714
ORF1ab/nsp31179A1179TGcaAca11B.1.1.2140.000055
ORF1ab/nsp31179A1179VgCagTa11B.1.1.2370.005405
ORF1ab/nsp31179A1179VgCagTa11B.1.1.2730.006757
ORF1ab/nsp31179A1179VgCagTa11B.1.1.2770.000759
ORF1ab/nsp31179A1179VgCagTa11B.1.1.2940.001266
ORF1ab/nsp31179A1179VgCagTa11B.1.1.3060.000438
ORF1ab/nsp31179A1179delGCA---11B.1.1.3150.008475
ORF1ab/nsp31179A1179AgcAgcT11B.1.1.330.000421
ORF1ab/nsp31179A1179AgcAgcT11B.1.1.3360.016667
ORF1ab/nsp31179A1179delGCA---11B.1.1.3480.000796
ORF1ab/nsp31179A1179VgCagTa11B.1.1.3480.000796
ORF1ab/nsp31179A1179PGcaCca11B.1.1.370.000193
ORF1ab/nsp31179A1179VgCagTa11B.1.1.40.002976
ORF1ab/nsp31179A1179delGCA---11B.1.1.4090.002833
ORF1ab/nsp31179A1179TGcaAca11B.1.1.460.004367
ORF1ab/nsp31179A1179del1gcAgc-11B.1.1.70.000001
ORF1ab/nsp31179A1179del2gCAg--11B.1.1.70.000001
ORF1ab/nsp31179A1179VgCagTa11B.1.110.30.000718
ORF1ab/nsp31179A1179VgCagTa11B.1.1110.001175
ORF1ab/nsp31179A1179SGcaTca11B.1.160.260.002421
ORF1ab/nsp31179A1179VgCagTa11B.1.160.310.008065
ORF1ab/nsp31179A1179PGcaCca11B.1.1770.000013
ORF1ab/nsp31179A1179delGCA---11B.1.1770.000013
ORF1ab/nsp31179A1179AgcAgcT11B.1.177.170.000821
ORF1ab/nsp31179A1179VgCagTa11B.1.177.330.001645
ORF1ab/nsp31179A1179VgCagTa11B.1.177.430.001477
ORF1ab/nsp31179A1179VgCagTa11B.1.177.450.000381
ORF1ab/nsp31179A1179delGCA---11B.1.177.620.001192
ORF1ab/nsp31179A1179SGcaTca11B.1.177.70.000165
ORF1ab/nsp31179A1179VgCagTa11B.1.177.730.000566
ORF1ab/nsp31179A1179SGcaTca11B.1.177.730.000566
ORF1ab/nsp31179A1179AgcAgcG11B.1.177.740.015152
ORF1ab/nsp31179A1179AgcAgcT11B.1.177.810.000189
ORF1ab/nsp31179A1179AgcAgcT11B.1.177.90.001332
ORF1ab/nsp31179A1179TGcaAca11B.1.20.000009
ORF1ab/nsp31179A1179SGcaTca11B.1.20.000009
ORF1ab/nsp31179A1179VgCagTa11B.1.2100.002132
ORF1ab/nsp31179A1179VgCagTa11B.1.221.30.000833
ORF1ab/nsp31179A1179IGCaATa11B.1.2410.000812
ORF1ab/nsp31179A1179delGCA---11B.1.2580.000067
ORF1ab/nsp31179A1179TGcaAca11B.1.2580.000067
ORF1ab/nsp31179A1179AgcAgcT11B.1.2580.000067
ORF1ab/nsp31179A1179VgCagTa11B.1.3040.023256
ORF1ab/nsp31179A1179AgcAgcC11B.1.3110.000275
ORF1ab/nsp31179A1179SGcaTca11B.1.3200.001245
ORF1ab/nsp31179A1179VgCagTa11B.1.3460.001311
ORF1ab/nsp31179A1179SGcaTca11B.1.351.30.000876
ORF1ab/nsp31179A1179SGcaTca11B.1.36.120.009615
ORF1ab/nsp31179A1179VgCagTa11B.1.36.190.009259
ORF1ab/nsp31179A1179VgCagTa11B.1.36.210.00216
ORF1ab/nsp31179A1179VgCagTa11B.1.36.220.001208
ORF1ab/nsp31179A1179VgCagTa11B.1.36.260.002857
ORF1ab/nsp31179A1179PGcaCca11B.1.36.310.001751
ORF1ab/nsp31179A1179VgCagTa11B.1.36.310.001751
ORF1ab/nsp31179A1179VgCagTa11B.1.36.340.021277
ORF1ab/nsp31179A1179VgCagTa11B.1.36.360.000602
ORF1ab/nsp31179A1179SGcaTca11B.1.36.390.002217
ORF1ab/nsp31179A1179SGcaTca11B.1.36.70.004
ORF1ab/nsp31179A1179VgCagTa11B.1.3670.000792
ORF1ab/nsp31179A1179EgCagAa11B.1.3690.000285
ORF1ab/nsp31179A1179VgCagTa11B.1.3710.001122
ORF1ab/nsp31179A1179VgCagTa11B.1.3830.009009
ORF1ab/nsp31179A1179VgCagTa11B.1.3950.007042
ORF1ab/nsp31179A1179VgCagTa11B.1.3960.000706
ORF1ab/nsp31179A1179VgCagTa11B.1.4090.000781
ORF1ab/nsp31179A1179SGcaTca11B.1.4160.001269
ORF1ab/nsp31179A1179VgCagTa11B.1.4160.001269
ORF1ab/nsp31179A1179LGCaTTa11B.1.4160.001269
ORF1ab/nsp31179A1179TGcaAca11B.1.4270.00005
ORF1ab/nsp31179A1179VgCagTa11B.1.4280.00102
ORF1ab/nsp31179A1179VgCagTa11B.1.4560.003268
ORF1ab/nsp31179A1179VgCagTa11B.1.4590.004082
ORF1ab/nsp31179A1179AgcAgcC11B.1.4660.023256
ORF1ab/nsp31179A1179VgCagTa11B.1.4930.025641
ORF1ab/nsp31179A1179SGcaTca11B.1.5170.000427
ORF1ab/nsp31179A1179VgCagTa11B.1.5210.004975
ORF1ab/nsp31179A1179AgcAgcG11B.1.5260.000024
ORF1ab/nsp31179A1179VgCagTa11B.1.5370.02
ORF1ab/nsp31179A1179VgCagTa11B.1.5510.00129
ORF1ab/nsp31179A1179VgCagTa11B.1.5680.001111
ORF1ab/nsp31179A1179VgCagTa11B.1.5750.000303
ORF1ab/nsp31179A1179NGCAAAT11B.1.5760.000907
ORF1ab/nsp31179A1179IGCAATT11B.1.5760.000907
ORF1ab/nsp31179A1179YGCATAT11B.1.5760.000907
ORF1ab/nsp31179A1179FGCATTT11B.1.5760.000907
ORF1ab/nsp31179A1179SGcaTca11B.1.5760.000907
ORF1ab/nsp31179A1179VgCagTa11B.1.5880.00091
ORF1ab/nsp31179A1179VgCagTa11B.1.5950.000261
ORF1ab/nsp31179A1179VgCagTa11B.1.6200.000946
ORF1ab/nsp31179A1179VgCagTa11B.1.6210.000089
ORF1ab/nsp31179A1179AgcAgcT11B.1.6210.000089
ORF1ab/nsp31179A1179SGcaTca11B.1.6310.003367
ORF1ab/nsp31179A1179SGcaTca11B.1.780.008547
ORF1ab/nsp31179A1179TGcaAca11B.1.88.10.004808
ORF1ab/nsp31179A1179VgCagTa11B.310.003731
ORF1ab/nsp31179A1179VgCagTa11B.400.000364
ORF1ab/nsp31179A1179AgcAgcG11C.120.007194
ORF1ab/nsp31179A1179VgCagTa11C.300.001727
ORF1ab/nsp31179A1179TGcAAcC11C.350.000774
ORF1ab/nsp31179A1179EgCagAa11D.20.000075
ORF1ab/nsp31179A1179EgCagAa11P.10.000016
ORF1ab/nsp31179A1179DgCAgAT11P.10.000016
ORF1ab/nsp31179A1179FGCATTT11P.10.000016
ORF1ab/nsp31179A1179YGCATAT11P.10.000016
ORF1ab/nsp31179A1179XGCaTAa11P.10.000016
ORF1ab/nsp31179A1179LGCaTTa11P.10.000016
ORF1ab/nsp31179A1179del1gcAgc-11P.10.000016
ORF1ab/nsp31179A1179SGcaTca11P.1.140.000048
ORF1ab/nsp31179A1179VgCagTa11P.1.20.001156
ORF1ab/nsp31179A1179VgCagTa11P.30.001595

CoV-GLUE is still in development. CoV-GLUE was originally developed as part of COG-UK by Josh Singer using the GLUE framework at the MRC-University of Glasgow Centre for Virus Research (CVR). In 2021 it was redeveloped by Richard Orton to scale to the millions of genome sequences available. We acknowledge support from the MRC (MC_UU_12014/12), WT (220977/Z/20/Z) and UKRI G2P (MR/W005611/1). Please contact Richard Orton with any queries: Richard.Orton@glasgow.ac.uk

CoV-GLUE uses sequence data from GISAID. GISAID data provided via this web application is subject to GISAID's Terms and Conditions.