CoV-GLUEGenomeCountriesLineagesMutationsInsertionsDeletionsUpdated:

CoV-GLUE | Mutations | Mutation

CoV-GLUE Mutation: ORF = ORF1ab/nsp3 : CodonNum = 117 & Codon = gGt

Details of the codons used for the mutation across all lineages (CodonProp is the proportion each codon is used for this AA mutation):

ORFCodonNumMutORF1abMutMutTypeRefCodonMutCodonAACountCodonCountCodonPropGenome Position
ORF1ab/nsp3117D117GD935GnonsyngAtgGt1415141513068-3070

Details of the mutation no within lineages (LineageCodonProp is the proportion the codon is observed at, at this particular site, on each lineage):

ORFCodonNumMutRefCodonMutCodonCodonCountAACountLineageLineageCodonProp
ORF1ab/nsp3117D117GgAtgGt14151415All0.000271
ORF1ab/nsp3117D117GgAtgGt457457AY.40.000711
ORF1ab/nsp3117D117GgAtgGt151151B.1.1.70.000135
ORF1ab/nsp3117D117GgAtgGt101101AY.440.000615
ORF1ab/nsp3117D117GgAtgGt6363B.1.1.2160.0561
ORF1ab/nsp3117D117GgAtgGt4545B.1.617.20.000169
ORF1ab/nsp3117D117GgAtgGt4141B.1.5260.000964
ORF1ab/nsp3117D117GgAtgGt3939AY.250.000235
ORF1ab/nsp3117D117GgAtgGt3636AY.390.00089
ORF1ab/nsp3117D117GgAtgGt3636C.401
ORF1ab/nsp3117D117GgAtgGt2929B.1.6010.878788
ORF1ab/nsp3117D117GgAtgGt2525AY.30.000249
ORF1ab/nsp3117D117GgAtgGt2424AY.430.000106
ORF1ab/nsp3117D117GgAtgGt2424L.30.085106
ORF1ab/nsp3117D117GgAtgGt2222B.1.10.000399
ORF1ab/nsp3117D117GgAtgGt1818B.1.1.2580.058632
ORF1ab/nsp3117D117GgAtgGt1717AY.1020.000451
ORF1ab/nsp3117D117GgAtgGt1717B.10.000156
ORF1ab/nsp3117D117GgAtgGt1414B.1.1770.000184
ORF1ab/nsp3117D117GgAtgGt1414B.1.20.000123
ORF1ab/nsp3117D117GgAtgGt1313B.1.5170.005551
ORF1ab/nsp3117D117GgAtgGt1111AY.1030.000068
ORF1ab/nsp3117D117GgAtgGt1111B.1.4270.000555
ORF1ab/nsp3117D117GgAtgGt99AM.11
ORF1ab/nsp3117D117GgAtgGt99AY.4.2.10.001341
ORF1ab/nsp3117D117GgAtgGt88P.10.000126
ORF1ab/nsp3117D117GgAtgGt77B.1.177.860.001284
ORF1ab/nsp3117D117GgAtgGt66AY.200.000233
ORF1ab/nsp3117D117GgAtgGt66AY.3.10.000512
ORF1ab/nsp3117D117GgAtgGt66B.1.360.000875
ORF1ab/nsp3117D117GgAtgGt55AY.50.000103
ORF1ab/nsp3117D117GgAtgGt55B.1.1.3040.014045
ORF1ab/nsp3117D117GgAtgGt55B.1.1.3950.277778
ORF1ab/nsp3117D117GgAtgGt55B.1.258.110.001982
ORF1ab/nsp3117D117GgAtgGt44AY.1190.000141
ORF1ab/nsp3117D117GgAtgGt44AY.290.000063
ORF1ab/nsp3117D117GgAtgGt44AY.470.000124
ORF1ab/nsp3117D117GgAtgGt44B.1.1.5190.000159
ORF1ab/nsp3117D117GgAtgGt44B.1.2430.000278
ORF1ab/nsp3117D117GgAtgGt44B.1.3510.000119
ORF1ab/nsp3117D117GgAtgGt33AY.1000.000138
ORF1ab/nsp3117D117GgAtgGt33AY.140.000264
ORF1ab/nsp3117D117GgAtgGt33AY.330.0002
ORF1ab/nsp3117D117GgAtgGt33AY.360.000445
ORF1ab/nsp3117D117GgAtgGt33AY.4.20.000065
ORF1ab/nsp3117D117GgAtgGt33AY.420.000121
ORF1ab/nsp3117D117GgAtgGt33AY.75.10.000541
ORF1ab/nsp3117D117GgAtgGt33B.1.1.2840.000322
ORF1ab/nsp3117D117GgAtgGt33B.1.2580.0002
ORF1ab/nsp3117D117GgAtgGt33B.1.351.20.000908
ORF1ab/nsp3117D117GgAtgGt33R.10.00027
ORF1ab/nsp3117D117GgAtgGt22AY.1140.000462
ORF1ab/nsp3117D117GgAtgGt22AY.240.000862
ORF1ab/nsp3117D117GgAtgGt22AY.270.000129
ORF1ab/nsp3117D117GgAtgGt22AY.340.000194
ORF1ab/nsp3117D117GgAtgGt22AY.39.10.000079
ORF1ab/nsp3117D117GgAtgGt22AY.460.000208
ORF1ab/nsp3117D117GgAtgGt22AY.800.002257
ORF1ab/nsp3117D117GgAtgGt22AY.98.10.000097
ORF1ab/nsp3117D117GgAtgGt22B.1.1.2610.017241
ORF1ab/nsp3117D117GgAtgGt22B.1.1.3180.000604
ORF1ab/nsp3117D117GgAtgGt22B.1.1.3290.007692
ORF1ab/nsp3117D117GgAtgGt22B.1.1890.008584
ORF1ab/nsp3117D117GgAtgGt22B.1.2210.000142
ORF1ab/nsp3117D117GgAtgGt22B.1.2320.001075
ORF1ab/nsp3117D117GgAtgGt22B.1.4290.000047
ORF1ab/nsp3117D117GgAtgGt22B.1.4680.011429
ORF1ab/nsp3117D117GgAtgGt22B.1.910.004149
ORF1ab/nsp3117D117GgAtgGt22C.370.000232
ORF1ab/nsp3117D117GgAtgGt11A.10.000282
ORF1ab/nsp3117D117GgAtgGt11AY.10.000396
ORF1ab/nsp3117D117GgAtgGt11AY.1040.001984
ORF1ab/nsp3117D117GgAtgGt11AY.1090.00074
ORF1ab/nsp3117D117GgAtgGt11AY.1110.000183
ORF1ab/nsp3117D117GgAtgGt11AY.116.10.000311
ORF1ab/nsp3117D117GgAtgGt11AY.1170.000085
ORF1ab/nsp3117D117GgAtgGt11AY.1180.000063
ORF1ab/nsp3117D117GgAtgGt11AY.1200.000037
ORF1ab/nsp3117D117GgAtgGt11AY.130.000161
ORF1ab/nsp3117D117GgAtgGt11AY.160.00038
ORF1ab/nsp3117D117GgAtgGt11AY.180.010101
ORF1ab/nsp3117D117GgAtgGt11AY.260.000028
ORF1ab/nsp3117D117GgAtgGt11AY.450.000122
ORF1ab/nsp3117D117GgAtgGt11AY.540.000095
ORF1ab/nsp3117D117GgAtgGt11AY.70.000196
ORF1ab/nsp3117D117GgAtgGt11AY.7.10.000113
ORF1ab/nsp3117D117GgAtgGt11AY.720.001361
ORF1ab/nsp3117D117GgAtgGt11AY.840.000437
ORF1ab/nsp3117D117GgAtgGt11AY.9.10.000084
ORF1ab/nsp3117D117GgAtgGt11B.1.1.10.000327
ORF1ab/nsp3117D117GgAtgGt11B.1.1.2880.001916
ORF1ab/nsp3117D117GgAtgGt11B.1.1.3060.000438
ORF1ab/nsp3117D117GgAtgGt11B.1.1.3070.002532
ORF1ab/nsp3117D117GgAtgGt11B.1.1.3160.000925
ORF1ab/nsp3117D117GgAtgGt11B.1.1.4160.000905
ORF1ab/nsp3117D117GgAtgGt11B.1.1.4330.001425
ORF1ab/nsp3117D117GgAtgGt11B.1.1600.000031
ORF1ab/nsp3117D117GgAtgGt11B.1.177.40.000211
ORF1ab/nsp3117D117GgAtgGt11B.1.177.730.000566
ORF1ab/nsp3117D117GgAtgGt11B.1.177.770.000726
ORF1ab/nsp3117D117GgAtgGt11B.1.177.810.000189
ORF1ab/nsp3117D117GgAtgGt11B.1.2340.000132
ORF1ab/nsp3117D117GgAtgGt11B.1.258.70.001912
ORF1ab/nsp3117D117GgAtgGt11B.1.3110.000275
ORF1ab/nsp3117D117GgAtgGt11B.1.36.10.00114
ORF1ab/nsp3117D117GgAtgGt11B.1.36.80.001
ORF1ab/nsp3117D117GgAtgGt11B.1.5960.000087
ORF1ab/nsp3117D117GgAtgGt11B.1.6100.003546
ORF1ab/nsp3117D117GgAtgGt11B.1.6210.000089
ORF1ab/nsp3117D117GgAtgGt11P.1.10.000318
ORF1ab/nsp3117D117GgAtgGt11P.1.70.000319
ORF1ab/nsp3117D117GgAtgGt11Q.80.000165

CoV-GLUE is still in development. CoV-GLUE was originally developed as part of COG-UK by Josh Singer using the GLUE framework at the MRC-University of Glasgow Centre for Virus Research (CVR). In 2021 it was redeveloped by Richard Orton to scale to the millions of genome sequences available. We acknowledge support from the MRC (MC_UU_12014/12), WT (220977/Z/20/Z) and UKRI G2P (MR/W005611/1). Please contact Richard Orton with any queries: Richard.Orton@glasgow.ac.uk

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