CoV-GLUEGenomeCountriesLineagesMutationsInsertionsDeletionsUpdated:

CoV-GLUE | Mutations | Mutation

CoV-GLUE Mutation: ORF = ORF1ab/nsp3 : CodonNum = 117

Details of the codons used for the mutation across all lineages (CodonProp is the proportion each codon is used for this AA mutation):

ORFCodonNumMutORF1abMutMutTypeRefCodonMutCodonAACountCodonCountCodonPropGenome Position
ORF1ab/nsp3117D117GD935GnonsyngAtgGt1415141513068-3070
ORF1ab/nsp3117D117ND935NnonsynGatAat2382370.9957983068-3070
ORF1ab/nsp3117D117ED935EnonsyngaTgaG2382200.924373068-3070
ORF1ab/nsp3117D117ED935EnonsyngaTgaA238180.07563033068-3070
ORF1ab/nsp3117D117ND935NnonsynGaTAaC23810.004201683068-3070
ORF1ab/nsp3117D117YD935YnonsynGatTat1511500.9933783068-3070
ORF1ab/nsp3117D117YD935YnonsynGaTTaC15110.006622523068-3070
ORF1ab/nsp3117D117DD935DsyngaTgaC12612613068-3070
ORF1ab/nsp3117D117del1D935del1delgaTga-85810.9529413068-3070
ORF1ab/nsp3117D117del1D935del1delGAt-Gt8530.03529413068-3070
ORF1ab/nsp3117D117del1D935del1delGat-at8510.01176473068-3070
ORF1ab/nsp3117D117AD935AnonsyngAtgCt83790.9518073068-3070
ORF1ab/nsp3117D117AD935AnonsyngATgCA8320.02409643068-3070
ORF1ab/nsp3117D117AD935AnonsyngATgCG8320.02409643068-3070
ORF1ab/nsp3117D117delD935deldelGAT---757513068-3070
ORF1ab/nsp3117D117VD935VnonsyngAtgTt55430.7818183068-3070
ORF1ab/nsp3117D117VD935VnonsyngATgTA5590.1636363068-3070
ORF1ab/nsp3117D117VD935VnonsyngATgTG5530.05454553068-3070
ORF1ab/nsp3117D117ID935InonsynGATATA1890.53068-3070
ORF1ab/nsp3117D117ID935InonsynGAtATt1890.53068-3070
ORF1ab/nsp3117D117LD935LnonsynGAtCTt1350.3846153068-3070
ORF1ab/nsp3117D117LD935LnonsynGATCTA1350.3846153068-3070
ORF1ab/nsp3117D117LD935LnonsynGATCTG1330.2307693068-3070
ORF1ab/nsp3117D117HD935HnonsynGatCat121213068-3070
ORF1ab/nsp3117D117KD935KnonsynGaTAaA1290.753068-3070
ORF1ab/nsp3117D117KD935KnonsynGaTAaG1230.253068-3070
ORF1ab/nsp3117D117QD935QnonsynGaTCaA850.6253068-3070
ORF1ab/nsp3117D117QD935QnonsynGaTCaG830.3753068-3070
ORF1ab/nsp3117D117CD935CnonsynGAtTGt650.8333333068-3070
ORF1ab/nsp3117D117TD935TnonsynGATACA620.3333333068-3070
ORF1ab/nsp3117D117TD935TnonsynGATACG620.3333333068-3070
ORF1ab/nsp3117D117TD935TnonsynGAtACt620.3333333068-3070
ORF1ab/nsp3117D117PD935PnonsynGAtCCt620.3333333068-3070
ORF1ab/nsp3117D117PD935PnonsynGATCCG620.3333333068-3070
ORF1ab/nsp3117D117PD935PnonsynGATCCA620.3333333068-3070
ORF1ab/nsp3117D117CD935CnonsynGATTGC610.1666673068-3070
ORF1ab/nsp3117D117MD935MnonsynGATATG3313068-3070
ORF1ab/nsp3117D117del2D935del2delgATg--2213068-3070

Details of the mutation no within lineages (LineageCodonProp is the proportion the codon is observed at, at this particular site, on each lineage):

ORFCodonNumMutRefCodonMutCodonCodonCountAACountLineageLineageCodonProp
ORF1ab/nsp3117D117GgAtgGt14151415All0.000271
ORF1ab/nsp3117D117GgAtgGt457457AY.40.000711
ORF1ab/nsp3117D117NGatAat237238All0.000045
ORF1ab/nsp3117D117EgaTgaG220238All0.000042
ORF1ab/nsp3117D117EgaTgaA18238All0.000003
ORF1ab/nsp3117D117NGaTAaC1238All0
ORF1ab/nsp3117D117EgaTgaG189189AY.40.000294
ORF1ab/nsp3117D117YGatTat150151All0.000029
ORF1ab/nsp3117D117YGaTTaC1151All0
ORF1ab/nsp3117D117GgAtgGt151151B.1.1.70.000135
ORF1ab/nsp3117D117DgaTgaC126126All0.000024
ORF1ab/nsp3117D117NGatAat102102AY.430.000452
ORF1ab/nsp3117D117GgAtgGt101101AY.440.000615
ORF1ab/nsp3117D117del1gaTga-8185All0.000015
ORF1ab/nsp3117D117del1GAt-Gt385All0.000001
ORF1ab/nsp3117D117del1Gat-at185All0
ORF1ab/nsp3117D117AgAtgCt7983All0.000015
ORF1ab/nsp3117D117AgATgCA283All0
ORF1ab/nsp3117D117AgATgCG283All0
ORF1ab/nsp3117D117delGAT---7575All0.000014
ORF1ab/nsp3117D117del1gaTga-6667B.1.1.70.000059
ORF1ab/nsp3117D117del1GAt-Gt167B.1.1.70.000001
ORF1ab/nsp3117D117GgAtgGt6363B.1.1.2160.0561
ORF1ab/nsp3117D117VgAtgTt4355All0.000008
ORF1ab/nsp3117D117VgATgTA955All0.000002
ORF1ab/nsp3117D117VgATgTG355All0.000001
ORF1ab/nsp3117D117DgaTgaC5353B.1.1.70.000047
ORF1ab/nsp3117D117GgAtgGt4545B.1.617.20.000169
ORF1ab/nsp3117D117GgAtgGt4141B.1.5260.000964
ORF1ab/nsp3117D117GgAtgGt3939AY.250.000235
ORF1ab/nsp3117D117YGatTat3636AY.390.00089
ORF1ab/nsp3117D117GgAtgGt3636AY.390.00089
ORF1ab/nsp3117D117GgAtgGt3636C.401
ORF1ab/nsp3117D117GgAtgGt2929B.1.6010.878788
ORF1ab/nsp3117D117GgAtgGt2525AY.30.000249
ORF1ab/nsp3117D117GgAtgGt2424AY.430.000106
ORF1ab/nsp3117D117GgAtgGt2424L.30.085106
ORF1ab/nsp3117D117GgAtgGt2222B.1.10.000399
ORF1ab/nsp3117D117YGatTat2020AY.250.00012
ORF1ab/nsp3117D117IGAtATt918All0.000002
ORF1ab/nsp3117D117IGATATA918All0.000002
ORF1ab/nsp3117D117GgAtgGt1818B.1.1.2580.058632
ORF1ab/nsp3117D117AgAtgCt1818B.1.1.70.000016
ORF1ab/nsp3117D117GgAtgGt1717AY.1020.000451
ORF1ab/nsp3117D117NGatAat1717AY.40.000026
ORF1ab/nsp3117D117GgAtgGt1717B.10.000156
ORF1ab/nsp3117D117AgAtgCt1616AY.430.000071
ORF1ab/nsp3117D117NGatAat1616B.1.36.240.098765
ORF1ab/nsp3117D117NGatAat1515B.1.1.70.000013
ORF1ab/nsp3117D117GgAtgGt1414B.1.1770.000184
ORF1ab/nsp3117D117GgAtgGt1414B.1.20.000123
ORF1ab/nsp3117D117LGAtCTt513All0.000001
ORF1ab/nsp3117D117LGATCTA513All0.000001
ORF1ab/nsp3117D117LGATCTG313All0.000001
ORF1ab/nsp3117D117AgAtgCt1313AY.98.10.00063
ORF1ab/nsp3117D117VgAtgTt613B.1.20.000053
ORF1ab/nsp3117D117VgATgTA513B.1.20.000044
ORF1ab/nsp3117D117VgATgTG213B.1.20.000018
ORF1ab/nsp3117D117GgAtgGt1313B.1.5170.005551
ORF1ab/nsp3117D117HGatCat1212All0.000002
ORF1ab/nsp3117D117KGaTAaA912All0.000002
ORF1ab/nsp3117D117KGaTAaG312All0.000001
ORF1ab/nsp3117D117GgAtgGt1111AY.1030.000068
ORF1ab/nsp3117D117EgaTgaA811B.1.20.00007
ORF1ab/nsp3117D117EgaTgaG311B.1.20.000026
ORF1ab/nsp3117D117GgAtgGt1111B.1.4270.000555
ORF1ab/nsp3117D117YGatTat1111B.1.617.20.000041
ORF1ab/nsp3117D117delGAT---1010B.1.1.70.000009
ORF1ab/nsp3117D117IGATATA510B.1.20.000044
ORF1ab/nsp3117D117IGAtATt510B.1.20.000044
ORF1ab/nsp3117D117LGATCTA410B.1.20.000035
ORF1ab/nsp3117D117LGAtCTt410B.1.20.000035
ORF1ab/nsp3117D117LGATCTG210B.1.20.000018
ORF1ab/nsp3117D117NGatAat1010B.1.617.20.000038
ORF1ab/nsp3117D117NGatAat1010P.10.000158
ORF1ab/nsp3117D117GgAtgGt99AM.11
ORF1ab/nsp3117D117DgaTgaC99AY.40.000014
ORF1ab/nsp3117D117GgAtgGt99AY.4.2.10.001341
ORF1ab/nsp3117D117NGatAat89B.1.20.00007
ORF1ab/nsp3117D117NGaTAaC19B.1.20.000009
ORF1ab/nsp3117D117QGaTCaA58All0.000001
ORF1ab/nsp3117D117QGaTCaG38All0.000001
ORF1ab/nsp3117D117AgAtgCt88AY.30.00008
ORF1ab/nsp3117D117YGatTat88AY.40.000012
ORF1ab/nsp3117D117delGAT---88AY.50.000165
ORF1ab/nsp3117D117NGatAat88B.10.000073
ORF1ab/nsp3117D117YGatTat88B.10.000073
ORF1ab/nsp3117D117GgAtgGt88P.10.000126
ORF1ab/nsp3117D117delGAT---77AY.250.000042
ORF1ab/nsp3117D117YGatTat77AY.3.10.000597
ORF1ab/nsp3117D117DgaTgaC77AY.440.000043
ORF1ab/nsp3117D117EgaTgaG77AY.50.000145
ORF1ab/nsp3117D117NGatAat77AY.60.000288
ORF1ab/nsp3117D117DgaTgaC77B.1.1600.000218
ORF1ab/nsp3117D117GgAtgGt77B.1.177.860.001284
ORF1ab/nsp3117D117KGaTAaA57B.1.20.000044
ORF1ab/nsp3117D117KGaTAaG27B.1.20.000018
ORF1ab/nsp3117D117VgAtgTt77B.1.2580.000466
ORF1ab/nsp3117D117delGAT---660.333333
ORF1ab/nsp3117D117CGAtTGt56All0.000001
ORF1ab/nsp3117D117PGATCCG26All0
ORF1ab/nsp3117D117PGATCCA26All0
ORF1ab/nsp3117D117TGAtACt26All0
ORF1ab/nsp3117D117TGATACA26All0
ORF1ab/nsp3117D117TGATACG26All0
ORF1ab/nsp3117D117PGAtCCt26All0
ORF1ab/nsp3117D117CGATTGC16All0
ORF1ab/nsp3117D117NGatAat66AY.1060.002009
ORF1ab/nsp3117D117delGAT---66AY.1200.000223
ORF1ab/nsp3117D117GgAtgGt66AY.200.000233
ORF1ab/nsp3117D117VgAtgTt66AY.250.000036
ORF1ab/nsp3117D117GgAtgGt66AY.3.10.000512
ORF1ab/nsp3117D117DgaTgaC66B.1.1.2140.000333
ORF1ab/nsp3117D117QGaTCaA46B.1.20.000035
ORF1ab/nsp3117D117QGaTCaG26B.1.20.000018
ORF1ab/nsp3117D117AgAtgCt66B.1.3510.000178
ORF1ab/nsp3117D117GgAtgGt66B.1.360.000875
ORF1ab/nsp3117D117DgaTgaC66B.1.617.20.000023
ORF1ab/nsp3117D117EgaTgaA35AY.440.000018
ORF1ab/nsp3117D117EgaTgaG25AY.440.000012
ORF1ab/nsp3117D117GgAtgGt55AY.50.000103
ORF1ab/nsp3117D117GgAtgGt55B.1.1.3040.014045
ORF1ab/nsp3117D117GgAtgGt55B.1.1.3950.277778
ORF1ab/nsp3117D117YGatTat55B.1.1.70.000004
ORF1ab/nsp3117D117DgaTgaC55B.1.1770.000066
ORF1ab/nsp3117D117GgAtgGt55B.1.258.110.001982
ORF1ab/nsp3117D117VgAtgTt25B.1.3690.00057
ORF1ab/nsp3117D117VgATgTA25B.1.3690.00057
ORF1ab/nsp3117D117VgATgTG15B.1.3690.000285
ORF1ab/nsp3117D117YGatTat55B.1.4290.000118
ORF1ab/nsp3117D117YGatTat44AY.1000.000184
ORF1ab/nsp3117D117NGatAat44AY.1020.000106
ORF1ab/nsp3117D117GgAtgGt44AY.1190.000141
ORF1ab/nsp3117D117GgAtgGt44AY.290.000063
ORF1ab/nsp3117D117YGatTat44AY.4.2.10.000596
ORF1ab/nsp3117D117delGAT---44AY.430.000018
ORF1ab/nsp3117D117YGatTat44AY.430.000018
ORF1ab/nsp3117D117GgAtgGt44AY.470.000124
ORF1ab/nsp3117D117DgaTgaC44AY.98.10.000194
ORF1ab/nsp3117D117YGatTat44B.1.1.4340.001394
ORF1ab/nsp3117D117GgAtgGt44B.1.1.5190.000159
ORF1ab/nsp3117D117HGatCat44B.1.20.000035
ORF1ab/nsp3117D117GgAtgGt44B.1.2430.000278
ORF1ab/nsp3117D117GgAtgGt44B.1.3510.000119
ORF1ab/nsp3117D117IGATATA24B.1.3690.00057
ORF1ab/nsp3117D117IGAtATt24B.1.3690.00057
ORF1ab/nsp3117D117DgaTgaC44B.1.4290.000094
ORF1ab/nsp3117D117MGATATG33All0.000001
ORF1ab/nsp3117D117GgAtgGt33AY.1000.000138
ORF1ab/nsp3117D117GgAtgGt33AY.140.000264
ORF1ab/nsp3117D117NGatAat33AY.30.00003
ORF1ab/nsp3117D117GgAtgGt33AY.330.0002
ORF1ab/nsp3117D117GgAtgGt33AY.360.000445
ORF1ab/nsp3117D117delGAT---33AY.40.000005
ORF1ab/nsp3117D117AgAtgCt33AY.40.000005
ORF1ab/nsp3117D117GgAtgGt33AY.4.20.000065
ORF1ab/nsp3117D117GgAtgGt33AY.420.000121
ORF1ab/nsp3117D117YGatTat33AY.440.000018
ORF1ab/nsp3117D117AgAtgCt33AY.440.000018
ORF1ab/nsp3117D117GgAtgGt33AY.75.10.000541
ORF1ab/nsp3117D117delGAT---33B.10.000027
ORF1ab/nsp3117D117VgAtgTt33B.1.10.000054
ORF1ab/nsp3117D117GgAtgGt33B.1.1.2840.000322
ORF1ab/nsp3117D117delGAT---33B.1.1.330.001263
ORF1ab/nsp3117D117VgAtgTt33B.1.1.70.000003
ORF1ab/nsp3117D117del1gaTga-33B.1.177.820.001432
ORF1ab/nsp3117D117TGATACA13B.1.20.000009
ORF1ab/nsp3117D117AgAtgCt13B.1.20.000009
ORF1ab/nsp3117D117AgATgCG13B.1.20.000009
ORF1ab/nsp3117D117PGAtCCt13B.1.20.000009
ORF1ab/nsp3117D117PGATCCA13B.1.20.000009
ORF1ab/nsp3117D117TGATACG13B.1.20.000009
ORF1ab/nsp3117D117PGATCCG13B.1.20.000009
ORF1ab/nsp3117D117TGAtACt13B.1.20.000009
ORF1ab/nsp3117D117AgATgCA13B.1.20.000009
ORF1ab/nsp3117D117GgAtgGt33B.1.2580.0002
ORF1ab/nsp3117D117del1gaTga-33B.1.3510.000089
ORF1ab/nsp3117D117YGatTat33B.1.3510.000089
ORF1ab/nsp3117D117GgAtgGt33B.1.351.20.000908
ORF1ab/nsp3117D117KGaTAaA23B.1.3690.00057
ORF1ab/nsp3117D117EgaTgaA23B.1.3690.00057
ORF1ab/nsp3117D117LGATCTG13B.1.3690.000285
ORF1ab/nsp3117D117AgAtgCt13B.1.3690.000285
ORF1ab/nsp3117D117LGAtCTt13B.1.3690.000285
ORF1ab/nsp3117D117TGATACG13B.1.3690.000285
ORF1ab/nsp3117D117LGATCTA13B.1.3690.000285
ORF1ab/nsp3117D117PGATCCG13B.1.3690.000285
ORF1ab/nsp3117D117PGAtCCt13B.1.3690.000285
ORF1ab/nsp3117D117KGaTAaG13B.1.3690.000285
ORF1ab/nsp3117D117PGATCCA13B.1.3690.000285
ORF1ab/nsp3117D117AgATgCA13B.1.3690.000285
ORF1ab/nsp3117D117AgATgCG13B.1.3690.000285
ORF1ab/nsp3117D117TGAtACt13B.1.3690.000285
ORF1ab/nsp3117D117EgaTgaG13B.1.3690.000285
ORF1ab/nsp3117D117TGATACA13B.1.3690.000285
ORF1ab/nsp3117D117delGAT---33B.1.617.20.000011
ORF1ab/nsp3117D117EgaTgaG23B.1.617.20.000008
ORF1ab/nsp3117D117EgaTgaA13B.1.617.20.000004
ORF1ab/nsp3117D117NGatAat33P.1.150.000697
ORF1ab/nsp3117D117EgaTgaG33P.1.170.000485
ORF1ab/nsp3117D117GgAtgGt33R.10.00027
ORF1ab/nsp3117D117del2gATg--22All0
ORF1ab/nsp3117D117YGatTat22AY.1020.000053
ORF1ab/nsp3117D117NGatAat22AY.1030.000012
ORF1ab/nsp3117D117YGatTat22AY.1030.000012
ORF1ab/nsp3117D117YGatTat22AY.1080.002205
ORF1ab/nsp3117D117DgaTgaC22AY.1100.000225
ORF1ab/nsp3117D117GgAtgGt22AY.1140.000462
ORF1ab/nsp3117D117VgAtgTt22AY.1190.000071
ORF1ab/nsp3117D117YGatTat22AY.1210.000271
ORF1ab/nsp3117D117GgAtgGt22AY.240.000862
ORF1ab/nsp3117D117NGatAat22AY.250.000012
ORF1ab/nsp3117D117GgAtgGt22AY.270.000129
ORF1ab/nsp3117D117VgAtgTt22AY.290.000032
ORF1ab/nsp3117D117GgAtgGt22AY.340.000194
ORF1ab/nsp3117D117VgAtgTt22AY.390.000049
ORF1ab/nsp3117D117GgAtgGt22AY.39.10.000079
ORF1ab/nsp3117D117AgAtgCt22AY.4.20.000043
ORF1ab/nsp3117D117DgaTgaC22AY.430.000009
ORF1ab/nsp3117D117GgAtgGt22AY.460.000208
ORF1ab/nsp3117D117del1gaTga-22AY.520.001629
ORF1ab/nsp3117D117NGatAat22AY.740.000231
ORF1ab/nsp3117D117GgAtgGt22AY.800.002257
ORF1ab/nsp3117D117GgAtgGt22AY.98.10.000097
ORF1ab/nsp3117D117VgAtgTt22B.10.000018
ORF1ab/nsp3117D117delGAT---22B.1.10.000036
ORF1ab/nsp3117D117GgAtgGt22B.1.1.2610.017241
ORF1ab/nsp3117D117EgaTgaG22B.1.1.2650.006309
ORF1ab/nsp3117D117GgAtgGt22B.1.1.3180.000604
ORF1ab/nsp3117D117GgAtgGt22B.1.1.3290.007692
ORF1ab/nsp3117D117delGAT---22B.1.1.3480.001592
ORF1ab/nsp3117D117NGatAat22B.1.1.3640.133333
ORF1ab/nsp3117D117HGatCat22B.1.1.70.000002
ORF1ab/nsp3117D117EgaTgaG22B.1.1.950.039216
ORF1ab/nsp3117D117del1gaTga-22B.1.1600.000062
ORF1ab/nsp3117D117GgAtgGt22B.1.1890.008584
ORF1ab/nsp3117D117MGATATG22B.1.20.000018
ORF1ab/nsp3117D117NGatAat22B.1.214.20.001199
ORF1ab/nsp3117D117GgAtgGt22B.1.2210.000142
ORF1ab/nsp3117D117GgAtgGt22B.1.2320.001075
ORF1ab/nsp3117D117IGATATA12B.1.2340.000132
ORF1ab/nsp3117D117IGAtATt12B.1.2340.000132
ORF1ab/nsp3117D117VgATgTA12B.1.2340.000132
ORF1ab/nsp3117D117VgAtgTt12B.1.2340.000132
ORF1ab/nsp3117D117IGATATA12B.1.2430.00007
ORF1ab/nsp3117D117VgATgTA12B.1.2430.00007
ORF1ab/nsp3117D117VgAtgTt12B.1.2430.00007
ORF1ab/nsp3117D117IGAtATt12B.1.2430.00007
ORF1ab/nsp3117D117NGatAat22B.1.3690.00057
ORF1ab/nsp3117D117QGaTCaG12B.1.3690.000285
ORF1ab/nsp3117D117QGaTCaA12B.1.3690.000285
ORF1ab/nsp3117D117GgAtgGt22B.1.4290.000047
ORF1ab/nsp3117D117GgAtgGt22B.1.4680.011429
ORF1ab/nsp3117D117VgAtgTt22B.1.617.20.000008
ORF1ab/nsp3117D117YGatTat22B.1.621.10.001012
ORF1ab/nsp3117D117GgAtgGt22B.1.910.004149
ORF1ab/nsp3117D117GgAtgGt22C.370.000232
ORF1ab/nsp3117D117delGAT---22N.60.014184
ORF1ab/nsp3117D117EgaTgaA110.055556
ORF1ab/nsp3117D117GgAtgGt11A.10.000282
ORF1ab/nsp3117D117GgAtgGt11AY.10.000396
ORF1ab/nsp3117D117EgaTgaG11AY.1020.000027
ORF1ab/nsp3117D117GgAtgGt11AY.1040.001984
ORF1ab/nsp3117D117GgAtgGt11AY.1090.00074
ORF1ab/nsp3117D117GgAtgGt11AY.1110.000183
ORF1ab/nsp3117D117GgAtgGt11AY.116.10.000311
ORF1ab/nsp3117D117GgAtgGt11AY.1170.000085
ORF1ab/nsp3117D117GgAtgGt11AY.1180.000063
ORF1ab/nsp3117D117YGatTat11AY.1190.000035
ORF1ab/nsp3117D117DgaTgaC11AY.1200.000037
ORF1ab/nsp3117D117GgAtgGt11AY.1200.000037
ORF1ab/nsp3117D117GgAtgGt11AY.130.000161
ORF1ab/nsp3117D117GgAtgGt11AY.160.00038
ORF1ab/nsp3117D117DgaTgaC11AY.16.10.00047
ORF1ab/nsp3117D117GgAtgGt11AY.180.010101
ORF1ab/nsp3117D117DgaTgaC11AY.200.000039
ORF1ab/nsp3117D117YGatTat11AY.200.000039
ORF1ab/nsp3117D117NGatAat11AY.230.00007
ORF1ab/nsp3117D117YGatTat11AY.230.00007
ORF1ab/nsp3117D117DgaTgaC11AY.250.000006
ORF1ab/nsp3117D117del1gaTga-11AY.260.000028
ORF1ab/nsp3117D117EgaTgaG11AY.260.000028
ORF1ab/nsp3117D117GgAtgGt11AY.260.000028
ORF1ab/nsp3117D117DgaTgaC11AY.290.000016
ORF1ab/nsp3117D117AgAtgCt11AY.290.000016
ORF1ab/nsp3117D117DgaTgaC11AY.30.00001
ORF1ab/nsp3117D117delGAT---11AY.30.00001
ORF1ab/nsp3117D117delGAT---11AY.300.000396
ORF1ab/nsp3117D117YGatTat11AY.330.000067
ORF1ab/nsp3117D117delGAT---11AY.330.000067
ORF1ab/nsp3117D117EgaTgaG11AY.390.000025
ORF1ab/nsp3117D117HGatCat11AY.40.000002
ORF1ab/nsp3117D117YGatTat11AY.4.20.000022
ORF1ab/nsp3117D117NGatAat11AY.4.20.000022
ORF1ab/nsp3117D117EgaTgaG11AY.4.50.000107
ORF1ab/nsp3117D117NGatAat11AY.420.00004
ORF1ab/nsp3117D117delGAT---11AY.420.00004
ORF1ab/nsp3117D117CGAtTGt11AY.430.000004
ORF1ab/nsp3117D117HGatCat11AY.430.000004
ORF1ab/nsp3117D117EgaTgaG11AY.430.000004
ORF1ab/nsp3117D117CGAtTGt11AY.440.000006
ORF1ab/nsp3117D117GgAtgGt11AY.450.000122
ORF1ab/nsp3117D117CGAtTGt11AY.460.000104
ORF1ab/nsp3117D117delGAT---11AY.46.60.000072
ORF1ab/nsp3117D117YGatTat11AY.46.60.000072
ORF1ab/nsp3117D117EgaTgaG11AY.470.000031
ORF1ab/nsp3117D117YGatTat11AY.470.000031
ORF1ab/nsp3117D117DgaTgaC11AY.50.000021
ORF1ab/nsp3117D117NGatAat11AY.50.000021
ORF1ab/nsp3117D117del2gATg--11AY.5.30.000337
ORF1ab/nsp3117D117delGAT---11AY.5.40.000277
ORF1ab/nsp3117D117GgAtgGt11AY.540.000095
ORF1ab/nsp3117D117delGAT---11AY.650.000533
ORF1ab/nsp3117D117GgAtgGt11AY.70.000196
ORF1ab/nsp3117D117YGatTat11AY.7.10.000113
ORF1ab/nsp3117D117GgAtgGt11AY.7.10.000113
ORF1ab/nsp3117D117GgAtgGt11AY.720.001361
ORF1ab/nsp3117D117NGatAat11AY.750.000056
ORF1ab/nsp3117D117DgaTgaC11AY.750.000056
ORF1ab/nsp3117D117NGatAat11AY.770.001127
ORF1ab/nsp3117D117GgAtgGt11AY.840.000437
ORF1ab/nsp3117D117GgAtgGt11AY.9.10.000084
ORF1ab/nsp3117D117AgAtgCt11AY.980.000079
ORF1ab/nsp3117D117NGatAat11AY.98.10.000048
ORF1ab/nsp3117D117YGaTTaC11AY.990.001049
ORF1ab/nsp3117D117DgaTgaC11AY.99.10.001553
ORF1ab/nsp3117D117AgAtgCt11B0.000128
ORF1ab/nsp3117D117EgaTgaG11B.10.000009
ORF1ab/nsp3117D117DgaTgaC11B.10.000009
ORF1ab/nsp3117D117CGAtTGt11B.10.000009
ORF1ab/nsp3117D117del1gaTga-11B.1.10.000018
ORF1ab/nsp3117D117NGatAat11B.1.10.000018
ORF1ab/nsp3117D117DgaTgaC11B.1.10.000018
ORF1ab/nsp3117D117HGatCat11B.1.10.000018
ORF1ab/nsp3117D117GgAtgGt11B.1.1.10.000327
ORF1ab/nsp3117D117delGAT---11B.1.1.1390.022727
ORF1ab/nsp3117D117DgaTgaC11B.1.1.1530.001095
ORF1ab/nsp3117D117DgaTgaC11B.1.1.2200.001859
ORF1ab/nsp3117D117delGAT---11B.1.1.2840.000107
ORF1ab/nsp3117D117GgAtgGt11B.1.1.2880.001916
ORF1ab/nsp3117D117GgAtgGt11B.1.1.3060.000438
ORF1ab/nsp3117D117GgAtgGt11B.1.1.3070.002532
ORF1ab/nsp3117D117GgAtgGt11B.1.1.3160.000925
ORF1ab/nsp3117D117delGAT---11B.1.1.3690.000446
ORF1ab/nsp3117D117NGatAat11B.1.1.4060.006494
ORF1ab/nsp3117D117GgAtgGt11B.1.1.4160.000905
ORF1ab/nsp3117D117GgAtgGt11B.1.1.4330.001425
ORF1ab/nsp3117D117DgaTgaC11B.1.1.470.005348
ORF1ab/nsp3117D117YGatTat11B.1.1.5190.00004
ORF1ab/nsp3117D117GgAtgGt11B.1.1600.000031
ORF1ab/nsp3117D117VgAtgTt11B.1.1600.000031
ORF1ab/nsp3117D117AgAtgCt11B.1.1770.000013
ORF1ab/nsp3117D117EgaTgaG11B.1.1770.000013
ORF1ab/nsp3117D117YGatTat11B.1.177.100.000878
ORF1ab/nsp3117D117GgAtgGt11B.1.177.40.000211
ORF1ab/nsp3117D117del1gaTga-11B.1.177.60.000977
ORF1ab/nsp3117D117AgAtgCt11B.1.177.600.000218
ORF1ab/nsp3117D117GgAtgGt11B.1.177.730.000566
ORF1ab/nsp3117D117GgAtgGt11B.1.177.770.000726
ORF1ab/nsp3117D117GgAtgGt11B.1.177.810.000189
ORF1ab/nsp3117D117CGATTGC11B.1.20.000009
ORF1ab/nsp3117D117delGAT---11B.1.20.000009
ORF1ab/nsp3117D117DgaTgaC11B.1.20.000009
ORF1ab/nsp3117D117YGatTat11B.1.20.000009
ORF1ab/nsp3117D117YGatTat11B.1.2210.000071
ORF1ab/nsp3117D117NGatAat11B.1.2340.000132
ORF1ab/nsp3117D117GgAtgGt11B.1.2340.000132
ORF1ab/nsp3117D117EgaTgaA11B.1.2340.000132
ORF1ab/nsp3117D117KGaTAaA11B.1.2340.000132
ORF1ab/nsp3117D117KGaTAaA11B.1.2430.00007
ORF1ab/nsp3117D117NGatAat11B.1.2430.00007
ORF1ab/nsp3117D117EgaTgaA11B.1.2430.00007
ORF1ab/nsp3117D117YGatTat11B.1.2580.000067
ORF1ab/nsp3117D117EgaTgaA11B.1.258.110.000396
ORF1ab/nsp3117D117GgAtgGt11B.1.258.70.001912
ORF1ab/nsp3117D117GgAtgGt11B.1.3110.000275
ORF1ab/nsp3117D117del1GAt-Gt11B.1.3490.000715
ORF1ab/nsp3117D117del1gaTga-11B.1.36.10.00114
ORF1ab/nsp3117D117GgAtgGt11B.1.36.10.00114
ORF1ab/nsp3117D117GgAtgGt11B.1.36.80.001
ORF1ab/nsp3117D117HGatCat11B.1.3690.000285
ORF1ab/nsp3117D117MGATATG11B.1.3690.000285
ORF1ab/nsp3117D117delGAT---11B.1.416.10.001563
ORF1ab/nsp3117D117AgAtgCt11B.1.4270.00005
ORF1ab/nsp3117D117NGatAat11B.1.4270.00005
ORF1ab/nsp3117D117delGAT---11B.1.4290.000024
ORF1ab/nsp3117D117NGatAat11B.1.4460.02
ORF1ab/nsp3117D117VgAtgTt11B.1.4680.005714
ORF1ab/nsp3117D117del1Gat-at11B.1.5250.000113
ORF1ab/nsp3117D117YGatTat11B.1.5260.000024
ORF1ab/nsp3117D117YGatTat11B.1.5600.00463
ORF1ab/nsp3117D117delGAT---11B.1.5610.000397
ORF1ab/nsp3117D117DgaTgaC11B.1.5770.000687
ORF1ab/nsp3117D117delGAT---11B.1.5770.000687
ORF1ab/nsp3117D117YGatTat11B.1.5820.000491
ORF1ab/nsp3117D117DgaTgaC11B.1.5950.000261
ORF1ab/nsp3117D117GgAtgGt11B.1.5960.000087
ORF1ab/nsp3117D117YGatTat11B.1.6090.000479
ORF1ab/nsp3117D117GgAtgGt11B.1.6100.003546
ORF1ab/nsp3117D117HGatCat11B.1.617.20.000004
ORF1ab/nsp3117D117del1GAt-Gt11B.1.617.20.000004
ORF1ab/nsp3117D117del2gATg--11B.1.617.20.000004
ORF1ab/nsp3117D117EgaTgaG11B.1.6190.000871
ORF1ab/nsp3117D117GgAtgGt11B.1.6210.000089
ORF1ab/nsp3117D117VgAtgTt11B.1.930.000934
ORF1ab/nsp3117D117DgaTgaC11B.400.000364
ORF1ab/nsp3117D117NGatAat11C.310.017857
ORF1ab/nsp3117D117YGatTat11D.20.000075
ORF1ab/nsp3117D117VgAtgTt11P.10.000016
ORF1ab/nsp3117D117CGAtTGt11P.10.000016
ORF1ab/nsp3117D117HGatCat11P.10.000016
ORF1ab/nsp3117D117GgAtgGt11P.1.10.000318
ORF1ab/nsp3117D117AgAtgCt11P.1.120.000484
ORF1ab/nsp3117D117AgAtgCt11P.1.140.000048
ORF1ab/nsp3117D117GgAtgGt11P.1.70.000319
ORF1ab/nsp3117D117NGatAat11P.20.000187
ORF1ab/nsp3117D117DgaTgaC11Q.10.000126
ORF1ab/nsp3117D117delGAT---11Q.20.000613
ORF1ab/nsp3117D117DgaTgaC11Q.30.000145
ORF1ab/nsp3117D117NGatAat11Q.80.000165
ORF1ab/nsp3117D117GgAtgGt11Q.80.000165
ORF1ab/nsp3117D117DgaTgaC11R.10.00009
ORF1ab/nsp3117D117del1gaTga-11R.10.00009

CoV-GLUE is still in development. CoV-GLUE was originally developed as part of COG-UK by Josh Singer using the GLUE framework at the MRC-University of Glasgow Centre for Virus Research (CVR). In 2021 it was redeveloped by Richard Orton to scale to the millions of genome sequences available. We acknowledge support from the MRC (MC_UU_12014/12), WT (220977/Z/20/Z) and UKRI G2P (MR/W005611/1). Please contact Richard Orton with any queries: Richard.Orton@glasgow.ac.uk

CoV-GLUE uses sequence data from GISAID. GISAID data provided via this web application is subject to GISAID's Terms and Conditions.