CoV-GLUE | Mutations | Mutation

CoV-GLUE Mutation: ORF = ORF1ab/nsp3 : CodonNum = 1164

Details of the codons used for the mutation across all lineages (CodonProp is the proportion each codon is used for this AA mutation):

ORFCodonNumMutORF1abMutMutTypeRefCodonMutCodonAACountCodonCountCodonPropGenome Position
ORF1ab/nsp31164G1164GG1982GsynggAggC16318830.5413866209-6211
ORF1ab/nsp31164G1164GG1982GsynggAggG16317190.4408346209-6211
ORF1ab/nsp31164G1164GG1982GsynggAggT1631290.01778056209-6211
ORF1ab/nsp31164G1164VG1982VnonsyngGagTa262616209-6211
ORF1ab/nsp31164G1164delG1982deldelGGA---202016209-6211
ORF1ab/nsp31164G1164XG1982XnonsynGgaTga101016209-6211
ORF1ab/nsp31164G1164RG1982RnonsynGgaAga1090.96209-6211
ORF1ab/nsp31164G1164RG1982RnonsynGgaCga1010.16209-6211
ORF1ab/nsp31164G1164EG1982EnonsyngGagAa5516209-6211
ORF1ab/nsp31164G1164del1G1982del1delGga-ga430.756209-6211
ORF1ab/nsp31164G1164del1G1982del1delGgAAg-410.256209-6211
ORF1ab/nsp31164G1164KG1982KnonsynGGaAAa1116209-6211

Details of the mutation no within lineages (LineageCodonProp is the proportion the codon is observed at, at this particular site, on each lineage):

ORFCodonNumMutRefCodonMutCodonCodonCountAACountLineageLineageCodonProp
ORF1ab/nsp31164G1164GggAggC8831631All0.000169
ORF1ab/nsp31164G1164GggAggG7191631All0.000138
ORF1ab/nsp31164G1164GggAggT291631All0.000006
ORF1ab/nsp31164G1164GggAggC750750AY.140.06601
ORF1ab/nsp31164G1164GggAggG275275B.1.1.2171
ORF1ab/nsp31164G1164GggAggG199199S.10.985149
ORF1ab/nsp31164G1164GggAggG5663B.1.1.70.00005
ORF1ab/nsp31164G1164GggAggT563B.1.1.70.000004
ORF1ab/nsp31164G1164GggAggC263B.1.1.70.000002
ORF1ab/nsp31164G1164GggAggG3442AY.40.000053
ORF1ab/nsp31164G1164GggAggC742AY.40.000011
ORF1ab/nsp31164G1164GggAggT142AY.40.000002
ORF1ab/nsp31164G1164GggAggC1835B.1.617.20.000068
ORF1ab/nsp31164G1164GggAggG1635B.1.617.20.00006
ORF1ab/nsp31164G1164GggAggT135B.1.617.20.000004
ORF1ab/nsp31164G1164GggAggC2731B.1.1.2140.001497
ORF1ab/nsp31164G1164GggAggG431B.1.1.2140.000222
ORF1ab/nsp31164G1164VgGagTa2626All0.000005
ORF1ab/nsp31164G1164GggAggG2124AY.1030.00013
ORF1ab/nsp31164G1164GggAggT224AY.1030.000012
ORF1ab/nsp31164G1164GggAggC124AY.1030.000006
ORF1ab/nsp31164G1164delGGA---2020All0.000004
ORF1ab/nsp31164G1164GggAggG1818B.1.2410.01461
ORF1ab/nsp31164G1164GggAggG915AY.440.000055
ORF1ab/nsp31164G1164GggAggC515AY.440.00003
ORF1ab/nsp31164G1164GggAggT115AY.440.000006
ORF1ab/nsp31164G1164GggAggC1414AY.190.015964
ORF1ab/nsp31164G1164GggAggG1014B.10.000092
ORF1ab/nsp31164G1164GggAggC214B.10.000018
ORF1ab/nsp31164G1164GggAggT214B.10.000018
ORF1ab/nsp31164G1164XGgaTga1010All0.000002
ORF1ab/nsp31164G1164RGgaAga910All0.000002
ORF1ab/nsp31164G1164RGgaCga110All0
ORF1ab/nsp31164G1164GggAggG1010AY.430.000044
ORF1ab/nsp31164G1164GggAggC1010AY.540.000953
ORF1ab/nsp31164G1164GggAggG48AY.250.000024
ORF1ab/nsp31164G1164GggAggC48AY.250.000024
ORF1ab/nsp31164G1164VgGagTa77B.10.000064
ORF1ab/nsp31164G1164GggAggG56AY.30.00005
ORF1ab/nsp31164G1164GggAggC16AY.30.00001
ORF1ab/nsp31164G1164GggAggC66AY.380.002996
ORF1ab/nsp31164G1164EgGagAa55All0.000001
ORF1ab/nsp31164G1164GggAggC55AY.230.000349
ORF1ab/nsp31164G1164GggAggG45B.1.4290.000094
ORF1ab/nsp31164G1164GggAggC15B.1.4290.000024
ORF1ab/nsp31164G1164GggAggT25P.10.000032
ORF1ab/nsp31164G1164GggAggG25P.10.000032
ORF1ab/nsp31164G1164GggAggC15P.10.000016
ORF1ab/nsp31164G1164del1Gga-ga34All0.000001
ORF1ab/nsp31164G1164del1GgAAg-14All0
ORF1ab/nsp31164G1164GggAggC34AY.620.001307
ORF1ab/nsp31164G1164GggAggG14AY.620.000436
ORF1ab/nsp31164G1164GggAggC44AY.980.000316
ORF1ab/nsp31164G1164XGgaTga44B.10.000037
ORF1ab/nsp31164G1164GggAggG34B.1.10.000054
ORF1ab/nsp31164G1164GggAggT14B.1.10.000018
ORF1ab/nsp31164G1164delGGA---44B.1.1.70.000004
ORF1ab/nsp31164G1164GggAggG44B.1.6210.000354
ORF1ab/nsp31164G1164GggAggC33AY.130.000483
ORF1ab/nsp31164G1164GggAggG33AY.200.000117
ORF1ab/nsp31164G1164delGGA---33AY.250.000018
ORF1ab/nsp31164G1164GggAggG33AY.330.0002
ORF1ab/nsp31164G1164VgGagTa33AY.430.000013
ORF1ab/nsp31164G1164GggAggC33AY.870.002498
ORF1ab/nsp31164G1164GggAggT23B.1.1770.000026
ORF1ab/nsp31164G1164GggAggG13B.1.1770.000013
ORF1ab/nsp31164G1164VgGagTa33B.1.20.000026
ORF1ab/nsp31164G1164GggAggT13B.1.20.000009
ORF1ab/nsp31164G1164GggAggG13B.1.20.000009
ORF1ab/nsp31164G1164GggAggC13B.1.20.000009
ORF1ab/nsp31164G1164GggAggG22A.280.005291
ORF1ab/nsp31164G1164GggAggG22AY.1170.000169
ORF1ab/nsp31164G1164GggAggC12AY.1210.000135
ORF1ab/nsp31164G1164GggAggG12AY.1210.000135
ORF1ab/nsp31164G1164del1GgAAg-12AY.440.000006
ORF1ab/nsp31164G1164del1Gga-ga12AY.440.000006
ORF1ab/nsp31164G1164GggAggG22AY.5.40.000553
ORF1ab/nsp31164G1164GggAggC22AY.500.001599
ORF1ab/nsp31164G1164GggAggG22AY.510.001818
ORF1ab/nsp31164G1164GggAggC22B.1.1.1910.009524
ORF1ab/nsp31164G1164GggAggG22B.1.1.2650.006309
ORF1ab/nsp31164G1164GggAggT22B.1.1.280.000622
ORF1ab/nsp31164G1164GggAggT22B.1.1.4340.000697
ORF1ab/nsp31164G1164GggAggG22B.1.2340.000264
ORF1ab/nsp31164G1164GggAggG12B.1.2580.000067
ORF1ab/nsp31164G1164GggAggC12B.1.2580.000067
ORF1ab/nsp31164G1164GggAggC12B.1.3510.00003
ORF1ab/nsp31164G1164GggAggT12B.1.3510.00003
ORF1ab/nsp31164G1164GggAggG22B.1.4330.00639
ORF1ab/nsp31164G1164EgGagAa22B.1.466.20.000782
ORF1ab/nsp31164G1164GggAggG12B.1.4680.005714
ORF1ab/nsp31164G1164GggAggC12B.1.4680.005714
ORF1ab/nsp31164G1164GggAggG12B.1.617.10.000129
ORF1ab/nsp31164G1164GggAggC12B.1.617.10.000129
ORF1ab/nsp31164G1164VgGagTa22C.350.001548
ORF1ab/nsp31164G1164VgGagTa22D.20.00015
ORF1ab/nsp31164G1164VgGagTa11A0.000387
ORF1ab/nsp31164G1164XGgaTga11A.20.000662
ORF1ab/nsp31164G1164GggAggG11A.23.10.000704
ORF1ab/nsp31164G1164del1Gga-ga11A.280.002646
ORF1ab/nsp31164G1164KGGaAAa11All0
ORF1ab/nsp31164G1164GggAggG11AY.1020.000027
ORF1ab/nsp31164G1164GggAggT11AY.1100.000113
ORF1ab/nsp31164G1164RGgaAga11AY.1190.000035
ORF1ab/nsp31164G1164EgGagAa11AY.120.10.000321
ORF1ab/nsp31164G1164GggAggG11AY.16.10.00047
ORF1ab/nsp31164G1164RGgaAga11AY.260.000028
ORF1ab/nsp31164G1164GggAggG11AY.260.000028
ORF1ab/nsp31164G1164GggAggC11AY.29.10.000221
ORF1ab/nsp31164G1164GggAggG11AY.3.10.000085
ORF1ab/nsp31164G1164GggAggG11AY.300.000396
ORF1ab/nsp31164G1164EgGagAa11AY.300.000396
ORF1ab/nsp31164G1164GggAggG11AY.390.000025
ORF1ab/nsp31164G1164delGGA---11AY.40.000002
ORF1ab/nsp31164G1164VgGagTa11AY.40.000002
ORF1ab/nsp31164G1164GggAggG11AY.410.000294
ORF1ab/nsp31164G1164GggAggG11AY.420.00004
ORF1ab/nsp31164G1164delGGA---11AY.430.000004
ORF1ab/nsp31164G1164delGGA---11AY.440.000006
ORF1ab/nsp31164G1164RGgaAga11AY.440.000006
ORF1ab/nsp31164G1164GggAggC11AY.450.000122
ORF1ab/nsp31164G1164GggAggT11AY.470.000031
ORF1ab/nsp31164G1164del1Gga-ga11AY.480.000465
ORF1ab/nsp31164G1164VgGagTa11AY.50.000021
ORF1ab/nsp31164G1164GggAggG11AY.50.000021
ORF1ab/nsp31164G1164VgGagTa11AY.520.000814
ORF1ab/nsp31164G1164delGGA---11AY.610.000105
ORF1ab/nsp31164G1164GggAggG11AY.610.000105
ORF1ab/nsp31164G1164delGGA---11AY.660.00107
ORF1ab/nsp31164G1164RGgaAga11AY.670.000464
ORF1ab/nsp31164G1164GggAggC11AY.70.000196
ORF1ab/nsp31164G1164GggAggC11AY.75.10.00018
ORF1ab/nsp31164G1164delGGA---11AY.850.000427
ORF1ab/nsp31164G1164GggAggC11B0.000128
ORF1ab/nsp31164G1164VgGagTa11B0.000128
ORF1ab/nsp31164G1164RGgaAga11B.10.000009
ORF1ab/nsp31164G1164delGGA---11B.10.000009
ORF1ab/nsp31164G1164KGGaAAa11B.10.000009
ORF1ab/nsp31164G1164delGGA---11B.1.10.000018
ORF1ab/nsp31164G1164VgGagTa11B.1.10.000018
ORF1ab/nsp31164G1164GggAggG11B.1.1.250.000569
ORF1ab/nsp31164G1164GggAggG11B.1.1.3090.005848
ORF1ab/nsp31164G1164delGGA---11B.1.1.3480.000796
ORF1ab/nsp31164G1164delGGA---11B.1.1.4090.002833
ORF1ab/nsp31164G1164GggAggG11B.1.1.4090.002833
ORF1ab/nsp31164G1164RGgaAga11B.1.1.5190.00004
ORF1ab/nsp31164G1164GggAggG11B.1.1.5190.00004
ORF1ab/nsp31164G1164RGgaAga11B.1.1.70.000001
ORF1ab/nsp31164G1164XGgaTga11B.1.1.70.000001
ORF1ab/nsp31164G1164delGGA---11B.1.1.700.000341
ORF1ab/nsp31164G1164XGgaTga11B.1.1600.000031
ORF1ab/nsp31164G1164XGgaTga11B.1.160.160.000929
ORF1ab/nsp31164G1164delGGA---11B.1.177.180.00116
ORF1ab/nsp31164G1164GggAggG11B.1.177.520.001757
ORF1ab/nsp31164G1164GggAggC11B.1.177.540.000606
ORF1ab/nsp31164G1164GggAggT11B.1.177.860.000183
ORF1ab/nsp31164G1164RGgaAga11B.1.20.000009
ORF1ab/nsp31164G1164EgGagAa11B.1.2340.000132
ORF1ab/nsp31164G1164GggAggT11B.1.2430.00007
ORF1ab/nsp31164G1164delGGA---11B.1.2580.000067
ORF1ab/nsp31164G1164GggAggG11B.1.2650.001271
ORF1ab/nsp31164G1164VgGagTa11B.1.3010.005917
ORF1ab/nsp31164G1164GggAggT11B.1.3380.008621
ORF1ab/nsp31164G1164VgGagTa11B.1.3780.006849
ORF1ab/nsp31164G1164RGgaCga11B.1.4290.000024
ORF1ab/nsp31164G1164GggAggT11B.1.4360.001029
ORF1ab/nsp31164G1164XGgaTga11B.1.5960.000087
ORF1ab/nsp31164G1164XGgaTga11B.1.617.20.000004
ORF1ab/nsp31164G1164VgGagTa11B.1.6230.000536
ORF1ab/nsp31164G1164RGgaAga11B.1.6370.000073
ORF1ab/nsp31164G1164GggAggG11Q.30.000145