CoV-GLUEGenomeCountriesLineagesMutationsInsertionsDeletionsUpdated:

CoV-GLUE | Mutations | Mutation

CoV-GLUE Mutation: ORF = ORF1ab/nsp3 : CodonNum = 1164

Details of the codons used for the mutation across all lineages (CodonProp is the proportion each codon is used for this AA mutation):

ORFCodonNumMutORF1abMutMutTypeRefCodonMutCodonAACountCodonCountCodonPropGenome Position
ORF1ab/nsp31164G1164GG1982GsynggAggC16318830.5413866209-6211
ORF1ab/nsp31164G1164GG1982GsynggAggG16317190.4408346209-6211
ORF1ab/nsp31164G1164GG1982GsynggAggT1631290.01778056209-6211
ORF1ab/nsp31164G1164VG1982VnonsyngGagTa262616209-6211
ORF1ab/nsp31164G1164delG1982deldelGGA---202016209-6211
ORF1ab/nsp31164G1164XG1982XnonsynGgaTga101016209-6211
ORF1ab/nsp31164G1164RG1982RnonsynGgaAga1090.96209-6211
ORF1ab/nsp31164G1164RG1982RnonsynGgaCga1010.16209-6211
ORF1ab/nsp31164G1164EG1982EnonsyngGagAa5516209-6211
ORF1ab/nsp31164G1164del1G1982del1delGga-ga430.756209-6211
ORF1ab/nsp31164G1164del1G1982del1delGgAAg-410.256209-6211
ORF1ab/nsp31164G1164KG1982KnonsynGGaAAa1116209-6211

Details of the mutation no within lineages (LineageCodonProp is the proportion the codon is observed at, at this particular site, on each lineage):

ORFCodonNumMutRefCodonMutCodonCodonCountAACountLineageLineageCodonProp
ORF1ab/nsp31164G1164GggAggC8831631All0.000169
ORF1ab/nsp31164G1164GggAggG7191631All0.000138
ORF1ab/nsp31164G1164GggAggT291631All0.000006
ORF1ab/nsp31164G1164GggAggC750750AY.140.06601
ORF1ab/nsp31164G1164GggAggG275275B.1.1.2171
ORF1ab/nsp31164G1164GggAggG199199S.10.985149
ORF1ab/nsp31164G1164GggAggG5663B.1.1.70.00005
ORF1ab/nsp31164G1164GggAggT563B.1.1.70.000004
ORF1ab/nsp31164G1164GggAggC263B.1.1.70.000002
ORF1ab/nsp31164G1164GggAggG3442AY.40.000053
ORF1ab/nsp31164G1164GggAggC742AY.40.000011
ORF1ab/nsp31164G1164GggAggT142AY.40.000002
ORF1ab/nsp31164G1164GggAggC1835B.1.617.20.000068
ORF1ab/nsp31164G1164GggAggG1635B.1.617.20.00006
ORF1ab/nsp31164G1164GggAggT135B.1.617.20.000004
ORF1ab/nsp31164G1164GggAggC2731B.1.1.2140.001497
ORF1ab/nsp31164G1164GggAggG431B.1.1.2140.000222
ORF1ab/nsp31164G1164VgGagTa2626All0.000005
ORF1ab/nsp31164G1164GggAggG2124AY.1030.00013
ORF1ab/nsp31164G1164GggAggT224AY.1030.000012
ORF1ab/nsp31164G1164GggAggC124AY.1030.000006
ORF1ab/nsp31164G1164delGGA---2020All0.000004
ORF1ab/nsp31164G1164GggAggG1818B.1.2410.01461
ORF1ab/nsp31164G1164GggAggG915AY.440.000055
ORF1ab/nsp31164G1164GggAggC515AY.440.00003
ORF1ab/nsp31164G1164GggAggT115AY.440.000006
ORF1ab/nsp31164G1164GggAggC1414AY.190.015964
ORF1ab/nsp31164G1164GggAggG1014B.10.000092
ORF1ab/nsp31164G1164GggAggC214B.10.000018
ORF1ab/nsp31164G1164GggAggT214B.10.000018
ORF1ab/nsp31164G1164XGgaTga1010All0.000002
ORF1ab/nsp31164G1164RGgaAga910All0.000002
ORF1ab/nsp31164G1164RGgaCga110All0
ORF1ab/nsp31164G1164GggAggG1010AY.430.000044
ORF1ab/nsp31164G1164GggAggC1010AY.540.000953
ORF1ab/nsp31164G1164GggAggG48AY.250.000024
ORF1ab/nsp31164G1164GggAggC48AY.250.000024
ORF1ab/nsp31164G1164VgGagTa77B.10.000064
ORF1ab/nsp31164G1164GggAggG56AY.30.00005
ORF1ab/nsp31164G1164GggAggC16AY.30.00001
ORF1ab/nsp31164G1164GggAggC66AY.380.002996
ORF1ab/nsp31164G1164EgGagAa55All0.000001
ORF1ab/nsp31164G1164GggAggC55AY.230.000349
ORF1ab/nsp31164G1164GggAggG45B.1.4290.000094
ORF1ab/nsp31164G1164GggAggC15B.1.4290.000024
ORF1ab/nsp31164G1164GggAggT25P.10.000032
ORF1ab/nsp31164G1164GggAggG25P.10.000032
ORF1ab/nsp31164G1164GggAggC15P.10.000016
ORF1ab/nsp31164G1164del1Gga-ga34All0.000001
ORF1ab/nsp31164G1164del1GgAAg-14All0
ORF1ab/nsp31164G1164GggAggC34AY.620.001307
ORF1ab/nsp31164G1164GggAggG14AY.620.000436
ORF1ab/nsp31164G1164GggAggC44AY.980.000316
ORF1ab/nsp31164G1164XGgaTga44B.10.000037
ORF1ab/nsp31164G1164GggAggG34B.1.10.000054
ORF1ab/nsp31164G1164GggAggT14B.1.10.000018
ORF1ab/nsp31164G1164delGGA---44B.1.1.70.000004
ORF1ab/nsp31164G1164GggAggG44B.1.6210.000354
ORF1ab/nsp31164G1164GggAggC33AY.130.000483
ORF1ab/nsp31164G1164GggAggG33AY.200.000117
ORF1ab/nsp31164G1164delGGA---33AY.250.000018
ORF1ab/nsp31164G1164GggAggG33AY.330.0002
ORF1ab/nsp31164G1164VgGagTa33AY.430.000013
ORF1ab/nsp31164G1164GggAggC33AY.870.002498
ORF1ab/nsp31164G1164GggAggT23B.1.1770.000026
ORF1ab/nsp31164G1164GggAggG13B.1.1770.000013
ORF1ab/nsp31164G1164VgGagTa33B.1.20.000026
ORF1ab/nsp31164G1164GggAggT13B.1.20.000009
ORF1ab/nsp31164G1164GggAggG13B.1.20.000009
ORF1ab/nsp31164G1164GggAggC13B.1.20.000009
ORF1ab/nsp31164G1164GggAggG22A.280.005291
ORF1ab/nsp31164G1164GggAggG22AY.1170.000169
ORF1ab/nsp31164G1164GggAggC12AY.1210.000135
ORF1ab/nsp31164G1164GggAggG12AY.1210.000135
ORF1ab/nsp31164G1164del1GgAAg-12AY.440.000006
ORF1ab/nsp31164G1164del1Gga-ga12AY.440.000006
ORF1ab/nsp31164G1164GggAggG22AY.5.40.000553
ORF1ab/nsp31164G1164GggAggC22AY.500.001599
ORF1ab/nsp31164G1164GggAggG22AY.510.001818
ORF1ab/nsp31164G1164GggAggC22B.1.1.1910.009524
ORF1ab/nsp31164G1164GggAggG22B.1.1.2650.006309
ORF1ab/nsp31164G1164GggAggT22B.1.1.280.000622
ORF1ab/nsp31164G1164GggAggT22B.1.1.4340.000697
ORF1ab/nsp31164G1164GggAggG22B.1.2340.000264
ORF1ab/nsp31164G1164GggAggG12B.1.2580.000067
ORF1ab/nsp31164G1164GggAggC12B.1.2580.000067
ORF1ab/nsp31164G1164GggAggC12B.1.3510.00003
ORF1ab/nsp31164G1164GggAggT12B.1.3510.00003
ORF1ab/nsp31164G1164GggAggG22B.1.4330.00639
ORF1ab/nsp31164G1164EgGagAa22B.1.466.20.000782
ORF1ab/nsp31164G1164GggAggG12B.1.4680.005714
ORF1ab/nsp31164G1164GggAggC12B.1.4680.005714
ORF1ab/nsp31164G1164GggAggG12B.1.617.10.000129
ORF1ab/nsp31164G1164GggAggC12B.1.617.10.000129
ORF1ab/nsp31164G1164VgGagTa22C.350.001548
ORF1ab/nsp31164G1164VgGagTa22D.20.00015
ORF1ab/nsp31164G1164VgGagTa11A0.000387
ORF1ab/nsp31164G1164XGgaTga11A.20.000662
ORF1ab/nsp31164G1164GggAggG11A.23.10.000704
ORF1ab/nsp31164G1164del1Gga-ga11A.280.002646
ORF1ab/nsp31164G1164KGGaAAa11All0
ORF1ab/nsp31164G1164GggAggG11AY.1020.000027
ORF1ab/nsp31164G1164GggAggT11AY.1100.000113
ORF1ab/nsp31164G1164RGgaAga11AY.1190.000035
ORF1ab/nsp31164G1164EgGagAa11AY.120.10.000321
ORF1ab/nsp31164G1164GggAggG11AY.16.10.00047
ORF1ab/nsp31164G1164RGgaAga11AY.260.000028
ORF1ab/nsp31164G1164GggAggG11AY.260.000028
ORF1ab/nsp31164G1164GggAggC11AY.29.10.000221
ORF1ab/nsp31164G1164GggAggG11AY.3.10.000085
ORF1ab/nsp31164G1164GggAggG11AY.300.000396
ORF1ab/nsp31164G1164EgGagAa11AY.300.000396
ORF1ab/nsp31164G1164GggAggG11AY.390.000025
ORF1ab/nsp31164G1164delGGA---11AY.40.000002
ORF1ab/nsp31164G1164VgGagTa11AY.40.000002
ORF1ab/nsp31164G1164GggAggG11AY.410.000294
ORF1ab/nsp31164G1164GggAggG11AY.420.00004
ORF1ab/nsp31164G1164delGGA---11AY.430.000004
ORF1ab/nsp31164G1164delGGA---11AY.440.000006
ORF1ab/nsp31164G1164RGgaAga11AY.440.000006
ORF1ab/nsp31164G1164GggAggC11AY.450.000122
ORF1ab/nsp31164G1164GggAggT11AY.470.000031
ORF1ab/nsp31164G1164del1Gga-ga11AY.480.000465
ORF1ab/nsp31164G1164VgGagTa11AY.50.000021
ORF1ab/nsp31164G1164GggAggG11AY.50.000021
ORF1ab/nsp31164G1164VgGagTa11AY.520.000814
ORF1ab/nsp31164G1164delGGA---11AY.610.000105
ORF1ab/nsp31164G1164GggAggG11AY.610.000105
ORF1ab/nsp31164G1164delGGA---11AY.660.00107
ORF1ab/nsp31164G1164RGgaAga11AY.670.000464
ORF1ab/nsp31164G1164GggAggC11AY.70.000196
ORF1ab/nsp31164G1164GggAggC11AY.75.10.00018
ORF1ab/nsp31164G1164delGGA---11AY.850.000427
ORF1ab/nsp31164G1164GggAggC11B0.000128
ORF1ab/nsp31164G1164VgGagTa11B0.000128
ORF1ab/nsp31164G1164RGgaAga11B.10.000009
ORF1ab/nsp31164G1164delGGA---11B.10.000009
ORF1ab/nsp31164G1164KGGaAAa11B.10.000009
ORF1ab/nsp31164G1164delGGA---11B.1.10.000018
ORF1ab/nsp31164G1164VgGagTa11B.1.10.000018
ORF1ab/nsp31164G1164GggAggG11B.1.1.250.000569
ORF1ab/nsp31164G1164GggAggG11B.1.1.3090.005848
ORF1ab/nsp31164G1164delGGA---11B.1.1.3480.000796
ORF1ab/nsp31164G1164delGGA---11B.1.1.4090.002833
ORF1ab/nsp31164G1164GggAggG11B.1.1.4090.002833
ORF1ab/nsp31164G1164RGgaAga11B.1.1.5190.00004
ORF1ab/nsp31164G1164GggAggG11B.1.1.5190.00004
ORF1ab/nsp31164G1164RGgaAga11B.1.1.70.000001
ORF1ab/nsp31164G1164XGgaTga11B.1.1.70.000001
ORF1ab/nsp31164G1164delGGA---11B.1.1.700.000341
ORF1ab/nsp31164G1164XGgaTga11B.1.1600.000031
ORF1ab/nsp31164G1164XGgaTga11B.1.160.160.000929
ORF1ab/nsp31164G1164delGGA---11B.1.177.180.00116
ORF1ab/nsp31164G1164GggAggG11B.1.177.520.001757
ORF1ab/nsp31164G1164GggAggC11B.1.177.540.000606
ORF1ab/nsp31164G1164GggAggT11B.1.177.860.000183
ORF1ab/nsp31164G1164RGgaAga11B.1.20.000009
ORF1ab/nsp31164G1164EgGagAa11B.1.2340.000132
ORF1ab/nsp31164G1164GggAggT11B.1.2430.00007
ORF1ab/nsp31164G1164delGGA---11B.1.2580.000067
ORF1ab/nsp31164G1164GggAggG11B.1.2650.001271
ORF1ab/nsp31164G1164VgGagTa11B.1.3010.005917
ORF1ab/nsp31164G1164GggAggT11B.1.3380.008621
ORF1ab/nsp31164G1164VgGagTa11B.1.3780.006849
ORF1ab/nsp31164G1164RGgaCga11B.1.4290.000024
ORF1ab/nsp31164G1164GggAggT11B.1.4360.001029
ORF1ab/nsp31164G1164XGgaTga11B.1.5960.000087
ORF1ab/nsp31164G1164XGgaTga11B.1.617.20.000004
ORF1ab/nsp31164G1164VgGagTa11B.1.6230.000536
ORF1ab/nsp31164G1164RGgaAga11B.1.6370.000073
ORF1ab/nsp31164G1164GggAggG11Q.30.000145

CoV-GLUE is still in development. CoV-GLUE was originally developed as part of COG-UK by Josh Singer using the GLUE framework at the MRC-University of Glasgow Centre for Virus Research (CVR). In 2021 it was redeveloped by Richard Orton to scale to the millions of genome sequences available. We acknowledge support from the MRC (MC_UU_12014/12), WT (220977/Z/20/Z) and UKRI G2P (MR/W005611/1). Please contact Richard Orton with any queries: Richard.Orton@glasgow.ac.uk

CoV-GLUE uses sequence data from GISAID. GISAID data provided via this web application is subject to GISAID's Terms and Conditions.