CoV-GLUE | Mutations | Mutation
Details of the codons used for the mutation across all lineages (CodonProp is the proportion each codon is used for this AA mutation):
ORF | CodonNum | Mut | ORF1abMut | MutType | RefCodon | MutCodon | AACount | CodonCount | CodonProp | Genome Position |
ORF1ab/nsp3 | 1159 | P1159P | P1977P | syn | ccC | ccT | 15090 | 14916 | 0.988469 | 6194-6196 |
Details of the mutation no within lineages (LineageCodonProp is the proportion the codon is observed at, at this particular site, on each lineage):
ORF | CodonNum | Mut | RefCodon | MutCodon | CodonCount | AACount | Lineage | LineageCodonProp |
ORF1ab/nsp3 | 1159 | P1159P | ccC | ccT | 14916 | 15090 | All | 0.002853 |
ORF1ab/nsp3 | 1159 | P1159P | ccC | ccT | 4971 | 5020 | B.1.1.7 | 0.00445 |
ORF1ab/nsp3 | 1159 | P1159P | ccC | ccT | 1611 | 1623 | B.1.2 | 0.014185 |
ORF1ab/nsp3 | 1159 | P1159P | ccC | ccT | 1490 | 1504 | AY.3 | 0.01482 |
ORF1ab/nsp3 | 1159 | P1159P | ccC | ccT | 1259 | 1262 | AY.44 | 0.007663 |
ORF1ab/nsp3 | 1159 | P1159P | ccC | ccT | 1118 | 1128 | B.1.617.2 | 0.00421 |
ORF1ab/nsp3 | 1159 | P1159P | ccC | ccT | 586 | 588 | AY.102 | 0.015537 |
ORF1ab/nsp3 | 1159 | P1159P | ccC | ccT | 506 | 516 | AY.4 | 0.000788 |
ORF1ab/nsp3 | 1159 | P1159P | ccC | ccT | 291 | 292 | AY.39 | 0.007191 |
ORF1ab/nsp3 | 1159 | P1159P | ccC | ccT | 248 | 251 | AY.43 | 0.001099 |
ORF1ab/nsp3 | 1159 | P1159P | ccC | ccT | 188 | 193 | AY.25 | 0.001131 |
ORF1ab/nsp3 | 1159 | P1159P | ccC | ccT | 162 | 162 | AY.9.1 | 0.013563 |
ORF1ab/nsp3 | 1159 | P1159P | ccC | ccT | 145 | 147 | P.1 | 0.002284 |
ORF1ab/nsp3 | 1159 | P1159P | ccC | ccT | 103 | 106 | B.1 | 0.000943 |
ORF1ab/nsp3 | 1159 | P1159P | ccC | ccT | 95 | 100 | AY.103 | 0.00059 |
ORF1ab/nsp3 | 1159 | P1159P | ccC | ccT | 91 | 91 | B.1.243 | 0.006332 |
ORF1ab/nsp3 | 1159 | P1159P | ccC | ccT | 88 | 88 | AY.120 | 0.003272 |
ORF1ab/nsp3 | 1159 | P1159P | ccC | ccT | 76 | 77 | B.1.526 | 0.001786 |
ORF1ab/nsp3 | 1159 | P1159P | ccC | ccT | 61 | 65 | B.1.1 | 0.001107 |
ORF1ab/nsp3 | 1159 | P1159P | ccC | ccT | 45 | 65 | B.1.1.519 | 0.001787 |
ORF1ab/nsp3 | 1159 | P1159P | ccC | ccT | 58 | 58 | AY.4.2 | 0.001258 |
ORF1ab/nsp3 | 1159 | P1159P | ccC | ccT | 57 | 57 | B.1.429 | 0.001341 |
ORF1ab/nsp3 | 1159 | P1159P | ccC | ccT | 53 | 53 | B.1.408 | 0.195572 |
ORF1ab/nsp3 | 1159 | P1159P | ccC | ccT | 46 | 48 | B.1.177 | 0.000606 |
ORF1ab/nsp3 | 1159 | P1159P | ccC | ccT | 42 | 42 | AY.98 | 0.003318 |
ORF1ab/nsp3 | 1159 | P1159P | ccC | ccT | 39 | 39 | AY.47 | 0.001213 |
ORF1ab/nsp3 | 1159 | P1159P | ccC | ccT | 38 | 38 | B.1.177.86 | 0.006971 |
ORF1ab/nsp3 | 1159 | P1159P | ccC | ccT | 35 | 35 | B.1.541 | 0.154867 |
ORF1ab/nsp3 | 1159 | P1159P | ccC | ccT | 34 | 34 | B.1.444 | 0.539683 |
ORF1ab/nsp3 | 1159 | P1159P | ccC | ccT | 33 | 33 | B.1.351 | 0.000981 |
ORF1ab/nsp3 | 1159 | P1159P | ccC | ccT | 30 | 31 | AY.20 | 0.001166 |
ORF1ab/nsp3 | 1159 | P1159P | ccC | ccT | 30 | 31 | B.1.221 | 0.002131 |
ORF1ab/nsp3 | 1159 | P1159P | ccC | ccT | 31 | 31 | B.1.258.17 | 0.003223 |
ORF1ab/nsp3 | 1159 | P1159P | ccC | ccT | 31 | 31 | B.1.525 | 0.003508 |
ORF1ab/nsp3 | 1159 | P1159P | ccC | ccT | 30 | 30 | B.1.427 | 0.001515 |
ORF1ab/nsp3 | 1159 | P1159P | ccC | ccT | 28 | 28 | P.1.15 | 0.006506 |
ORF1ab/nsp3 | 1159 | P1159P | ccC | ccT | 26 | 27 | AY.113 | 0.003702 |
ORF1ab/nsp3 | 1159 | P1159P | ccC | ccT | 27 | 27 | AY.46 | 0.00281 |
ORF1ab/nsp3 | 1159 | P1159P | ccC | ccT | 27 | 27 | AY.73 | 0.017964 |
ORF1ab/nsp3 | 1159 | P1159P | ccC | ccT | 25 | 25 | AY.91 | 0.018262 |
ORF1ab/nsp3 | 1159 | P1159P | ccC | ccT | 23 | 23 | AY.42 | 0.000925 |
ORF1ab/nsp3 | 1159 | P1159P | ccC | ccT | 22 | 23 | AY.5 | 0.000454 |
ORF1ab/nsp3 | 1159 | P1159P | ccC | ccT | 23 | 23 | B.1.177.77 | 0.016703 |
ORF1ab/nsp3 | 1159 | P1159P | ccC | ccT | 22 | 23 | P.2 | 0.004106 |
ORF1ab/nsp3 | 1159 | P1159P | ccC | ccT | 21 | 21 | AY.45 | 0.002555 |
ORF1ab/nsp3 | 1159 | P1159P | ccC | ccT | 21 | 21 | B.1.1.486 | 0.033123 |
ORF1ab/nsp3 | 1159 | P1159P | ccC | ccT | 20 | 20 | AY.119 | 0.000706 |
ORF1ab/nsp3 | 1159 | P1159P | ccC | ccT | 20 | 20 | AY.46.6 | 0.001444 |
ORF1ab/nsp3 | 1159 | P1159P | ccC | ccT | 20 | 20 | B.1.36 | 0.002918 |
ORF1ab/nsp3 | 1159 | P1159P | ccC | ccT | 18 | 19 | AY.100 | 0.000828 |
ORF1ab/nsp3 | 1159 | P1159P | ccC | ccT | 19 | 19 | AY.29 | 0.0003 |
ORF1ab/nsp3 | 1159 | P1159P | ccC | ccT | 19 | 19 | B.1.1.39 | 0.009684 |
ORF1ab/nsp3 | 1159 | P1159P | ccC | ccT | 18 | 18 | AY.26 | 0.00051 |
ORF1ab/nsp3 | 1159 | P1159P | ccC | ccT | 17 | 17 | C.33 | 1 |
ORF1ab/nsp3 | 1159 | P1159P | ccC | ccT | 16 | 16 | AU.1 | 0.020253 |
ORF1ab/nsp3 | 1159 | P1159P | ccC | ccT | 16 | 16 | AY.39.1 | 0.000634 |
ORF1ab/nsp3 | 1159 | P1159P | ccC | ccT | 16 | 16 | Q.2 | 0.009816 |
ORF1ab/nsp3 | 1159 | P1159P | ccC | ccT | 15 | 15 | P.1.13 | 0.013477 |
ORF1ab/nsp3 | 1159 | P1159P | ccC | ccT | 14 | 14 | AY.114 | 0.003235 |
ORF1ab/nsp3 | 1159 | P1159P | ccC | ccT | 14 | 14 | B.1.160 | 0.000437 |
ORF1ab/nsp3 | 1159 | P1159P | ccC | ccT | 14 | 14 | B.1.236 | 0.028747 |
ORF1ab/nsp3 | 1159 | P1159P | ccC | ccT | 14 | 14 | B.1.258 | 0.000932 |
ORF1ab/nsp3 | 1159 | P1159P | ccC | ccT | 13 | 13 | AY.118 | 0.000814 |
ORF1ab/nsp3 | 1159 | P1159P | ccC | ccT | 12 | 12 | AY.99.2 | 0.001106 |
ORF1ab/nsp3 | 1159 | P1159P | ccC | ccT | 12 | 12 | P.1.14 | 0.000574 |
ORF1ab/nsp3 | 1159 | P1159P | ccC | ccT | 11 | 11 | AY.84 | 0.004812 |
ORF1ab/nsp3 | 1159 | P1159P | ccC | ccT | 9 | 10 | AY.23 | 0.000628 |
ORF1ab/nsp3 | 1159 | P1159P | ccC | ccT | 10 | 10 | AY.61 | 0.001048 |
ORF1ab/nsp3 | 1159 | P1159P | ccC | ccT | 10 | 10 | AY.95 | 0.00761 |
ORF1ab/nsp3 | 1159 | P1159P | ccC | ccT | 10 | 10 | AY.98.1 | 0.000484 |
ORF1ab/nsp3 | 1159 | P1159P | ccC | ccT | 10 | 10 | B.1.621 | 0.000885 |
ORF1ab/nsp3 | 1159 | P1159P | ccC | ccT | 10 | 10 | Q.1 | 0.001263 |
ORF1ab/nsp3 | 1159 | P1159P | ccC | ccT | 9 | 9 | AY.9 | 0.000608 |
ORF1ab/nsp3 | 1159 | P1159P | ccC | ccT | 9 | 9 | B.1.1.311 | 0.003223 |
ORF1ab/nsp3 | 1159 | P1159P | ccC | ccT | 8 | 9 | B.1.596 | 0.000697 |
ORF1ab/nsp3 | 1159 | P1159P | ccC | ccT | 9 | 9 | B.1.609 | 0.004314 |
ORF1ab/nsp3 | 1159 | P1159P | ccC | ccT | 8 | 8 | AY.105 | 0.005145 |
ORF1ab/nsp3 | 1159 | P1159P | ccC | ccT | 8 | 8 | AY.107 | 0.003728 |
ORF1ab/nsp3 | 1159 | P1159P | ccC | ccT | 8 | 8 | AY.30 | 0.003166 |
ORF1ab/nsp3 | 1159 | P1159P | ccC | ccT | 7 | 8 | AY.75 | 0.000392 |
ORF1ab/nsp3 | 1159 | P1159P | ccC | ccT | 8 | 8 | B.1.1.224 | 0.114286 |
ORF1ab/nsp3 | 1159 | P1159P | ccC | ccT | 8 | 8 | B.1.177.19 | 0.011445 |
ORF1ab/nsp3 | 1159 | P1159P | ccC | ccT | 8 | 8 | B.1.177.36 | 0.129032 |
ORF1ab/nsp3 | 1159 | P1159P | ccC | ccT | 7 | 8 | D.2 | 0.000525 |
ORF1ab/nsp3 | 1159 | P1159P | ccC | ccT | 7 | 7 | AY.27 | 0.000453 |
ORF1ab/nsp3 | 1159 | P1159P | ccC | ccT | 7 | 7 | AY.46.2 | 0.004447 |
ORF1ab/nsp3 | 1159 | P1159P | ccC | ccT | 7 | 7 | B.1.305 | 0.015054 |
ORF1ab/nsp3 | 1159 | P1159P | ccC | ccT | 7 | 7 | B.1.630 | 0.036649 |
ORF1ab/nsp3 | 1159 | P1159P | ccC | ccT | 6 | 6 | AY.29.1 | 0.001323 |
ORF1ab/nsp3 | 1159 | P1159P | ccC | ccT | 6 | 6 | AY.3.1 | 0.000512 |
ORF1ab/nsp3 | 1159 | P1159P | ccC | ccT | 6 | 6 | AY.33 | 0.000401 |
ORF1ab/nsp3 | 1159 | P1159P | ccC | ccT | 6 | 6 | AY.97 | 0.010204 |
ORF1ab/nsp3 | 1159 | P1159P | ccC | ccT | 6 | 6 | B.1.1.28 | 0.001867 |
ORF1ab/nsp3 | 1159 | P1159P | ccC | ccT | 6 | 6 | B.1.36.1 | 0.006842 |
ORF1ab/nsp3 | 1159 | P1159P | ccC | ccT | 6 | 6 | P.1.12 | 0.002904 |
ORF1ab/nsp3 | 1159 | P1159P | ccC | ccT | 5 | 5 | AY.109 | 0.003698 |
ORF1ab/nsp3 | 1159 | P1159P | ccC | ccT | 5 | 5 | AY.116 | 0.001434 |
ORF1ab/nsp3 | 1159 | P1159P | ccC | ccT | 5 | 5 | AY.117 | 0.000423 |
ORF1ab/nsp3 | 1159 | P1159P | ccC | ccT | 5 | 5 | AY.14 | 0.00044 |
ORF1ab/nsp3 | 1159 | P1159P | ccC | ccT | 5 | 5 | AY.16.1 | 0.00235 |
ORF1ab/nsp3 | 1159 | P1159P | ccC | ccT | 5 | 5 | AY.34.1 | 0.00255 |
ORF1ab/nsp3 | 1159 | P1159P | ccC | ccT | 4 | 5 | AY.46.4 | 0.000658 |
ORF1ab/nsp3 | 1159 | P1159P | ccC | ccT | 5 | 5 | B.1.1.265 | 0.015773 |
ORF1ab/nsp3 | 1159 | P1159P | ccC | ccT | 5 | 5 | B.1.1.284 | 0.000537 |
ORF1ab/nsp3 | 1159 | P1159P | ccC | ccT | 5 | 5 | B.1.1.291 | 0.003712 |
ORF1ab/nsp3 | 1159 | P1159P | ccC | ccT | 4 | 5 | B.1.617.1 | 0.000516 |
ORF1ab/nsp3 | 1159 | P1159P | ccC | ccT | 5 | 5 | C.37 | 0.00058 |
ORF1ab/nsp3 | 1159 | P1159P | ccC | ccT | 4 | 4 | A.1 | 0.001127 |
ORF1ab/nsp3 | 1159 | P1159P | ccC | ccT | 4 | 4 | A.2.5 | 0.001996 |
ORF1ab/nsp3 | 1159 | P1159P | ccC | ccT | 4 | 4 | AY.21 | 0.00759 |
ORF1ab/nsp3 | 1159 | P1159P | ccC | ccT | 4 | 4 | AY.5.4 | 0.001107 |
ORF1ab/nsp3 | 1159 | P1159P | ccC | ccT | 4 | 4 | AY.54 | 0.000381 |
ORF1ab/nsp3 | 1159 | P1159P | ccC | ccT | 4 | 4 | AY.7 | 0.000784 |
ORF1ab/nsp3 | 1159 | P1159P | ccC | ccT | 4 | 4 | AY.79 | 0.004843 |
ORF1ab/nsp3 | 1159 | P1159P | ccC | ccT | 4 | 4 | AY.99 | 0.004197 |
ORF1ab/nsp3 | 1159 | P1159P | ccC | ccT | 4 | 4 | B.1.1.222 | 0.000816 |
ORF1ab/nsp3 | 1159 | P1159P | ccC | ccT | 4 | 4 | B.1.1.33 | 0.001684 |
ORF1ab/nsp3 | 1159 | P1159P | ccC | ccT | 1 | 4 | B.1.1.348 | 0.000796 |
ORF1ab/nsp3 | 1159 | P1159P | ccC | ccT | 4 | 4 | B.1.1.37 | 0.000771 |
ORF1ab/nsp3 | 1159 | P1159P | ccC | ccT | 4 | 4 | B.1.1.526 | 0.014184 |
ORF1ab/nsp3 | 1159 | P1159P | ccC | ccT | 4 | 4 | B.1.234 | 0.000528 |
ORF1ab/nsp3 | 1159 | P1159P | ccC | ccT | 4 | 4 | B.1.36.29 | 0.002069 |
ORF1ab/nsp3 | 1159 | P1159P | ccC | ccT | 4 | 4 | B.1.561 | 0.001588 |
ORF1ab/nsp3 | 1159 | P1159P | ccC | ccT | 4 | 4 | B.1.628 | 0.001409 |
ORF1ab/nsp3 | 1159 | P1159P | ccC | ccT | 4 | 4 | P.1.17 | 0.000647 |
ORF1ab/nsp3 | 1159 | P1159P | ccC | ccT | 3 | 3 | AY.106 | 0.001005 |
ORF1ab/nsp3 | 1159 | P1159P | ccC | ccT | 3 | 3 | AY.111 | 0.000549 |
ORF1ab/nsp3 | 1159 | P1159P | ccC | ccT | 3 | 3 | AY.6 | 0.000123 |
ORF1ab/nsp3 | 1159 | P1159P | ccC | ccT | 3 | 3 | AY.64 | 0.001786 |
ORF1ab/nsp3 | 1159 | P1159P | ccC | ccT | 3 | 3 | AY.75.1 | 0.000541 |
ORF1ab/nsp3 | 1159 | P1159P | ccC | ccT | 3 | 3 | AY.85 | 0.001282 |
ORF1ab/nsp3 | 1159 | P1159P | ccC | ccT | 3 | 3 | AY.88 | 0.002653 |
ORF1ab/nsp3 | 1159 | P1159P | ccC | ccT | 3 | 3 | AY.9.2 | 0.00011 |
ORF1ab/nsp3 | 1159 | P1159P | ccC | ccT | 3 | 3 | B.1.1.136 | 0.06383 |
ORF1ab/nsp3 | 1159 | P1159P | ccC | ccT | 3 | 3 | B.1.1.27 | 0.016949 |
ORF1ab/nsp3 | 1159 | P1159P | ccC | ccT | 3 | 3 | B.1.1.280 | 0.009259 |
ORF1ab/nsp3 | 1159 | P1159P | ccC | ccT | 3 | 3 | B.1.1.4 | 0.008929 |
ORF1ab/nsp3 | 1159 | P1159P | ccC | ccT | 3 | 3 | B.1.1.75 | 0.031915 |
ORF1ab/nsp3 | 1159 | P1159P | ccC | ccT | 3 | 3 | B.1.128 | 0.001906 |
ORF1ab/nsp3 | 1159 | P1159P | ccC | ccT | 3 | 3 | B.1.177.42 | 0.002683 |
ORF1ab/nsp3 | 1159 | P1159P | ccC | ccT | 2 | 3 | B.1.177.73 | 0.001133 |
ORF1ab/nsp3 | 1159 | P1159P | ccC | ccT | 3 | 3 | B.1.36.18 | 0.001261 |
ORF1ab/nsp3 | 1159 | P1159P | ccC | ccT | 3 | 3 | B.1.564 | 0.001278 |
ORF1ab/nsp3 | 1159 | P1159P | ccC | ccT | 3 | 3 | B.1.564.1 | 0.004732 |
ORF1ab/nsp3 | 1159 | P1159P | ccC | ccT | 3 | 3 | B.1.619 | 0.002613 |
ORF1ab/nsp3 | 1159 | P1159P | ccC | ccT | 3 | 3 | B.1.620 | 0.002838 |
ORF1ab/nsp3 | 1159 | P1159P | ccC | ccT | 3 | 3 | C.14 | 0.012987 |
ORF1ab/nsp3 | 1159 | P1159P | ccC | ccT | 3 | 3 | C.16 | 0.003181 |
ORF1ab/nsp3 | 1159 | P1159P | ccC | ccT | 3 | 3 | Q.8 | 0.000495 |
ORF1ab/nsp3 | 1159 | P1159P | ccC | ccT | 3 | 3 | R.1 | 0.00027 |
ORF1ab/nsp3 | 1159 | P1159P | ccC | ccT | 1 | 2 | 0.055556 | |
ORF1ab/nsp3 | 1159 | P1159P | ccC | ccT | 2 | 2 | A.29 | 0.010638 |
ORF1ab/nsp3 | 1159 | P1159P | ccC | ccT | 2 | 2 | AY.120.1 | 0.000642 |
ORF1ab/nsp3 | 1159 | P1159P | ccC | ccT | 2 | 2 | AY.121 | 0.000271 |
ORF1ab/nsp3 | 1159 | P1159P | ccC | ccT | 2 | 2 | AY.32 | 0.001065 |
ORF1ab/nsp3 | 1159 | P1159P | ccC | ccT | 2 | 2 | AY.34 | 0.000194 |
ORF1ab/nsp3 | 1159 | P1159P | ccC | ccT | 2 | 2 | AY.4.4 | 0.000818 |
ORF1ab/nsp3 | 1159 | P1159P | ccC | ccT | 2 | 2 | AY.40 | 0.001929 |
ORF1ab/nsp3 | 1159 | P1159P | ccC | ccT | 2 | 2 | AY.48 | 0.00093 |
ORF1ab/nsp3 | 1159 | P1159P | ccC | ccT | 2 | 2 | AY.5.3 | 0.000675 |
ORF1ab/nsp3 | 1159 | P1159P | ccC | ccT | 2 | 2 | AY.56 | 0.00321 |
ORF1ab/nsp3 | 1159 | P1159P | ccC | ccT | 1 | 2 | AY.69 | 0.000187 |
ORF1ab/nsp3 | 1159 | P1159P | ccC | ccT | 2 | 2 | AY.82 | 0.002714 |
ORF1ab/nsp3 | 1159 | P1159P | ccC | ccT | 2 | 2 | AY.87 | 0.001665 |
ORF1ab/nsp3 | 1159 | P1159P | ccC | ccT | 2 | 2 | AY.96 | 0.004149 |
ORF1ab/nsp3 | 1159 | P1159P | ccC | ccT | 1 | 2 | B | 0.000128 |
ORF1ab/nsp3 | 1159 | P1159P | ccC | ccT | 2 | 2 | B.1.1.1 | 0.000653 |
ORF1ab/nsp3 | 1159 | P1159P | ccC | ccT | 2 | 2 | B.1.1.214 | 0.000111 |
ORF1ab/nsp3 | 1159 | P1159P | ccC | ccT | 2 | 2 | B.1.1.306 | 0.000877 |
ORF1ab/nsp3 | 1159 | P1159P | ccC | ccT | 2 | 2 | B.1.1.318 | 0.000604 |
ORF1ab/nsp3 | 1159 | P1159P | ccC | ccT | 2 | 2 | B.1.1.464 | 0.002946 |
ORF1ab/nsp3 | 1159 | P1159P | ccC | ccT | 2 | 2 | B.1.1.70 | 0.000682 |
ORF1ab/nsp3 | 1159 | P1159P | ccC | ccT | 2 | 2 | B.1.177.69 | 0.002967 |
ORF1ab/nsp3 | 1159 | P1159P | ccC | ccT | 2 | 2 | B.1.177.82 | 0.000955 |
ORF1ab/nsp3 | 1159 | P1159P | ccC | ccT | 2 | 2 | B.1.222 | 0.003384 |
ORF1ab/nsp3 | 1159 | P1159P | ccC | ccT | 2 | 2 | B.1.258.14 | 0.001961 |
ORF1ab/nsp3 | 1159 | P1159P | ccC | ccT | 2 | 2 | B.1.36.26 | 0.005714 |
ORF1ab/nsp3 | 1159 | P1159P | ccC | ccT | 2 | 2 | B.1.36.9 | 0.006431 |
ORF1ab/nsp3 | 1159 | P1159P | ccC | ccT | 2 | 2 | B.1.367 | 0.001585 |
ORF1ab/nsp3 | 1159 | P1159P | ccC | ccT | 2 | 2 | B.1.369 | 0.00057 |
ORF1ab/nsp3 | 1159 | P1159P | ccC | ccT | 2 | 2 | B.1.389 | 0.002004 |
ORF1ab/nsp3 | 1159 | P1159P | ccC | ccT | 2 | 2 | B.1.428 | 0.002041 |
ORF1ab/nsp3 | 1159 | P1159P | ccC | ccT | 2 | 2 | B.1.438.1 | 0.000215 |
ORF1ab/nsp3 | 1159 | P1159P | ccC | ccT | 2 | 2 | B.1.466.2 | 0.000782 |
ORF1ab/nsp3 | 1159 | P1159P | ccC | ccT | 2 | 2 | B.1.499 | 0.002101 |
ORF1ab/nsp3 | 1159 | P1159P | ccC | ccT | 2 | 2 | B.1.595 | 0.000522 |
ORF1ab/nsp3 | 1159 | P1159P | ccC | ccT | 2 | 2 | C.36 | 0.001821 |
ORF1ab/nsp3 | 1159 | P1159P | ccC | ccT | 2 | 2 | P.1.10 | 0.000539 |
ORF1ab/nsp3 | 1159 | P1159P | ccC | ccT | 2 | 2 | P.1.2 | 0.002312 |
ORF1ab/nsp3 | 1159 | P1159P | ccC | ccT | 2 | 2 | P.5 | 0.027397 |
ORF1ab/nsp3 | 1159 | P1159P | ccC | ccT | 1 | 1 | A.2.5.1 | 0.004808 |
ORF1ab/nsp3 | 1159 | P1159P | ccC | ccT | 1 | 1 | AH.3 | 0.003802 |
ORF1ab/nsp3 | 1159 | P1159P | ccC | ccT | 1 | 1 | AV.1 | 0.005051 |
ORF1ab/nsp3 | 1159 | P1159P | ccC | ccT | 1 | 1 | AY.104 | 0.001984 |
ORF1ab/nsp3 | 1159 | P1159P | ccC | ccT | 1 | 1 | AY.110 | 0.000113 |
ORF1ab/nsp3 | 1159 | P1159P | ccC | ccT | 1 | 1 | AY.116.1 | 0.000311 |
ORF1ab/nsp3 | 1159 | P1159P | ccC | ccT | 1 | 1 | AY.13 | 0.000161 |
ORF1ab/nsp3 | 1159 | P1159P | ccC | ccT | 1 | 1 | AY.2 | 0.000356 |
ORF1ab/nsp3 | 1159 | P1159P | ccC | ccT | 1 | 1 | AY.24 | 0.000431 |
ORF1ab/nsp3 | 1159 | P1159P | ccC | ccT | 1 | 1 | AY.36 | 0.000148 |
ORF1ab/nsp3 | 1159 | P1159P | ccC | ccT | 1 | 1 | AY.37 | 0.000316 |
ORF1ab/nsp3 | 1159 | P1159P | ccC | ccT | 1 | 1 | AY.38 | 0.000499 |
ORF1ab/nsp3 | 1159 | P1159P | ccC | ccT | 1 | 1 | AY.4.5 | 0.000107 |
ORF1ab/nsp3 | 1159 | P1159P | ccC | ccT | 1 | 1 | AY.41 | 0.000294 |
ORF1ab/nsp3 | 1159 | P1159P | ccC | ccT | 1 | 1 | AY.46.1 | 0.001027 |
ORF1ab/nsp3 | 1159 | P1159P | ccC | ccT | 1 | 1 | AY.46.5 | 0.000198 |
ORF1ab/nsp3 | 1159 | P1159P | ccC | ccT | 1 | 1 | AY.51 | 0.000909 |
ORF1ab/nsp3 | 1159 | P1159P | ccC | ccT | 1 | 1 | AY.58 | 0.000907 |
ORF1ab/nsp3 | 1159 | P1159P | ccC | ccT | 1 | 1 | AY.59 | 0.00053 |
ORF1ab/nsp3 | 1159 | P1159P | ccC | ccT | 1 | 1 | AY.60 | 0.000938 |
ORF1ab/nsp3 | 1159 | P1159P | ccC | ccT | 1 | 1 | AY.62 | 0.000436 |
ORF1ab/nsp3 | 1159 | P1159P | ccC | ccT | 1 | 1 | AY.7.1 | 0.000113 |
ORF1ab/nsp3 | 1159 | P1159P | ccC | ccT | 1 | 1 | AY.71 | 0.000475 |
ORF1ab/nsp3 | 1159 | P1159P | ccC | ccT | 1 | 1 | AY.74 | 0.000116 |
ORF1ab/nsp3 | 1159 | P1159P | ccC | ccT | 1 | 1 | AY.77 | 0.001127 |
ORF1ab/nsp3 | 1159 | P1159P | ccC | ccT | 1 | 1 | AY.80 | 0.001129 |
ORF1ab/nsp3 | 1159 | P1159P | ccC | ccT | 1 | 1 | AY.86 | 0.00083 |
ORF1ab/nsp3 | 1159 | P1159P | ccC | ccT | 1 | 1 | AY.92 | 0.000287 |
ORF1ab/nsp3 | 1159 | P1159P | ccC | ccT | 1 | 1 | AY.93 | 0.000273 |
ORF1ab/nsp3 | 1159 | P1159P | ccC | ccT | 1 | 1 | AZ.2 | 0.000821 |
ORF1ab/nsp3 | 1159 | P1159P | ccC | ccT | 1 | 1 | B.1.1.10 | 0.001115 |
ORF1ab/nsp3 | 1159 | P1159P | ccC | ccT | 1 | 1 | B.1.1.205 | 0.003717 |
ORF1ab/nsp3 | 1159 | P1159P | ccC | ccT | 1 | 1 | B.1.1.227 | 0.004348 |
ORF1ab/nsp3 | 1159 | P1159P | ccC | ccT | 1 | 1 | B.1.1.274 | 0.005051 |
ORF1ab/nsp3 | 1159 | P1159P | ccC | ccT | 1 | 1 | B.1.1.286 | 0.002899 |
ORF1ab/nsp3 | 1159 | P1159P | ccC | ccT | 1 | 1 | B.1.1.289 | 0.002083 |
ORF1ab/nsp3 | 1159 | P1159P | ccC | ccT | 1 | 1 | B.1.1.302 | 0.002075 |
ORF1ab/nsp3 | 1159 | P1159P | ccC | ccT | 1 | 1 | B.1.1.303 | 0.002762 |
ORF1ab/nsp3 | 1159 | P1159P | ccC | ccT | 1 | 1 | B.1.1.308 | 0.011765 |
ORF1ab/nsp3 | 1159 | P1159P | ccC | ccT | 1 | 1 | B.1.1.312 | 0.001912 |
ORF1ab/nsp3 | 1159 | P1159P | ccC | ccT | 1 | 1 | B.1.1.362 | 0.005618 |
ORF1ab/nsp3 | 1159 | P1159P | ccC | ccT | 1 | 1 | B.1.1.371 | 0.010417 |
ORF1ab/nsp3 | 1159 | P1159P | ccC | ccT | 1 | 1 | B.1.1.387 | 0.058824 |
ORF1ab/nsp3 | 1159 | P1159P | ccC | ccT | 1 | 1 | B.1.1.409 | 0.002833 |
ORF1ab/nsp3 | 1159 | P1159P | ccC | ccT | 1 | 1 | B.1.1.434 | 0.000349 |
ORF1ab/nsp3 | 1159 | P1159P | ccC | ccT | 1 | 1 | B.1.1.448 | 0.002033 |
ORF1ab/nsp3 | 1159 | P1159P | ccC | ccT | 1 | 1 | B.1.1.485 | 0.016667 |
ORF1ab/nsp3 | 1159 | P1159P | ccC | ccT | 1 | 1 | B.1.1.5 | 0.008333 |
ORF1ab/nsp3 | 1159 | P1159P | ccC | ccT | 1 | 1 | B.1.1.524 | 0.020833 |
ORF1ab/nsp3 | 1159 | P1159P | ccC | ccT | 1 | 1 | B.1.1.525 | 0.005464 |
ORF1ab/nsp3 | 1159 | P1159P | ccC | ccT | 1 | 1 | B.1.1.58 | 0.005376 |
ORF1ab/nsp3 | 1159 | P1159P | ccC | ccT | 1 | 1 | B.1.111 | 0.001175 |
ORF1ab/nsp3 | 1159 | P1159P | ccC | ccT | 1 | 1 | B.1.119 | 0.010526 |
ORF1ab/nsp3 | 1159 | P1159P | ccC | ccT | 1 | 1 | B.1.13 | 0.002375 |
ORF1ab/nsp3 | 1159 | P1159P | ccC | ccT | 1 | 1 | B.1.140 | 0.018868 |
ORF1ab/nsp3 | 1159 | P1159P | ccC | ccT | 1 | 1 | B.1.160.14 | 0.002119 |
ORF1ab/nsp3 | 1159 | P1159P | ccC | ccT | 1 | 1 | B.1.160.28 | 0.002924 |
ORF1ab/nsp3 | 1159 | P1159P | ccC | ccT | 1 | 1 | B.1.169 | 0.014925 |
ORF1ab/nsp3 | 1159 | P1159P | ccC | ccT | 1 | 1 | B.1.177.17 | 0.000821 |
ORF1ab/nsp3 | 1159 | P1159P | ccC | ccT | 1 | 1 | B.1.177.18 | 0.00116 |
ORF1ab/nsp3 | 1159 | P1159P | ccC | ccT | 1 | 1 | B.1.177.21 | 0.000076 |
ORF1ab/nsp3 | 1159 | P1159P | ccC | ccT | 1 | 1 | B.1.177.4 | 0.000211 |
ORF1ab/nsp3 | 1159 | P1159P | ccC | ccT | 1 | 1 | B.1.177.5 | 0.001242 |
ORF1ab/nsp3 | 1159 | P1159P | ccC | ccT | 1 | 1 | B.1.177.54 | 0.000606 |
ORF1ab/nsp3 | 1159 | P1159P | ccC | ccT | 1 | 1 | B.1.177.57 | 0.000281 |
ORF1ab/nsp3 | 1159 | P1159P | ccC | ccT | 1 | 1 | B.1.177.8 | 0.000752 |
ORF1ab/nsp3 | 1159 | P1159P | ccC | ccT | 1 | 1 | B.1.206 | 0.000816 |
ORF1ab/nsp3 | 1159 | P1159P | ccC | ccT | 1 | 1 | B.1.218 | 0.005155 |
ORF1ab/nsp3 | 1159 | P1159P | ccC | ccT | 1 | 1 | B.1.235 | 0.002519 |
ORF1ab/nsp3 | 1159 | P1159P | ccC | ccT | 1 | 1 | B.1.237 | 0.004975 |
ORF1ab/nsp3 | 1159 | P1159P | ccC | ccT | 1 | 1 | B.1.239 | 0.001221 |
ORF1ab/nsp3 | 1159 | P1159P | ccC | ccT | 1 | 1 | B.1.247 | 0.014925 |
ORF1ab/nsp3 | 1159 | P1159P | ccC | ccT | 1 | 1 | B.1.258.3 | 0.001675 |
ORF1ab/nsp3 | 1159 | P1159P | ccC | ccT | 1 | 1 | B.1.258.4 | 0.003448 |
ORF1ab/nsp3 | 1159 | P1159P | ccC | ccT | 1 | 1 | B.1.260 | 0.003344 |
ORF1ab/nsp3 | 1159 | P1159P | ccC | ccT | 1 | 1 | B.1.311 | 0.000275 |
ORF1ab/nsp3 | 1159 | P1159P | ccC | ccT | 1 | 1 | B.1.343 | 0.020833 |
ORF1ab/nsp3 | 1159 | P1159P | ccC | ccT | 1 | 1 | B.1.346 | 0.001311 |
ORF1ab/nsp3 | 1159 | P1159P | ccC | ccT | 1 | 1 | B.1.351.3 | 0.000876 |
ORF1ab/nsp3 | 1159 | P1159P | ccC | ccT | 1 | 1 | B.1.357 | 0.009524 |
ORF1ab/nsp3 | 1159 | P1159P | ccC | ccT | 1 | 1 | B.1.36.17 | 0.000494 |
ORF1ab/nsp3 | 1159 | P1159P | ccC | ccT | 1 | 1 | B.1.385 | 0.010638 |
ORF1ab/nsp3 | 1159 | P1159P | ccC | ccT | 1 | 1 | B.1.399 | 0.001934 |
ORF1ab/nsp3 | 1159 | P1159P | ccC | ccT | 1 | 1 | B.1.413 | 0.004255 |
ORF1ab/nsp3 | 1159 | P1159P | ccC | ccT | 1 | 1 | B.1.421 | 0.007463 |
ORF1ab/nsp3 | 1159 | P1159P | ccC | ccT | 1 | 1 | B.1.422 | 0.000812 |
ORF1ab/nsp3 | 1159 | P1159P | ccC | ccT | 1 | 1 | B.1.456 | 0.003268 |
ORF1ab/nsp3 | 1159 | P1159P | ccC | ccT | 1 | 1 | B.1.470 | 0.001404 |
ORF1ab/nsp3 | 1159 | P1159P | ccC | ccT | 1 | 1 | B.1.509 | 0.000866 |
ORF1ab/nsp3 | 1159 | P1159P | ccC | ccT | 1 | 1 | B.1.517 | 0.000427 |
ORF1ab/nsp3 | 1159 | P1159P | ccC | ccT | 1 | 1 | B.1.524 | 0.001406 |
ORF1ab/nsp3 | 1159 | P1159P | ccC | ccT | 1 | 1 | B.1.530 | 0.007143 |
ORF1ab/nsp3 | 1159 | P1159P | ccC | ccT | 1 | 1 | B.1.551 | 0.00129 |
ORF1ab/nsp3 | 1159 | P1159P | ccC | ccT | 1 | 1 | B.1.565 | 0.00081 |
ORF1ab/nsp3 | 1159 | P1159P | ccC | ccT | 1 | 1 | B.1.575 | 0.000303 |
ORF1ab/nsp3 | 1159 | P1159P | ccC | ccT | 1 | 1 | B.1.576 | 0.000907 |
ORF1ab/nsp3 | 1159 | P1159P | ccC | ccT | 1 | 1 | B.1.580 | 0.004065 |
ORF1ab/nsp3 | 1159 | P1159P | ccC | ccT | 1 | 1 | B.1.601 | 0.030303 |
ORF1ab/nsp3 | 1159 | P1159P | ccC | ccT | 1 | 1 | B.1.612 | 0.002653 |
ORF1ab/nsp3 | 1159 | P1159P | ccC | ccT | 1 | 1 | B.1.9.5 | 0.005682 |
ORF1ab/nsp3 | 1159 | P1159P | ccC | ccT | 1 | 1 | B.1.91 | 0.002075 |
ORF1ab/nsp3 | 1159 | P1159P | ccC | ccT | 1 | 1 | C.30 | 0.001727 |
ORF1ab/nsp3 | 1159 | P1159P | ccC | ccT | 1 | 1 | C.36.1 | 0.004149 |
ORF1ab/nsp3 | 1159 | P1159P | ccC | ccT | 1 | 1 | C.36.3 | 0.000567 |
ORF1ab/nsp3 | 1159 | P1159P | ccC | ccT | 1 | 1 | N.5 | 0.001767 |
ORF1ab/nsp3 | 1159 | P1159P | ccC | ccT | 1 | 1 | P.1.1 | 0.000318 |
ORF1ab/nsp3 | 1159 | P1159P | ccC | ccT | 1 | 1 | P.1.7 | 0.000319 |
ORF1ab/nsp3 | 1159 | P1159P | ccC | ccT | 1 | 1 | P.3 | 0.001595 |
CoV-GLUE is still in development. CoV-GLUE was originally developed as part of COG-UK by Josh Singer using the GLUE framework at the MRC-University of Glasgow Centre for Virus Research (CVR). In 2021 it was redeveloped by Richard Orton to scale to the millions of genome sequences available. We acknowledge support from the MRC (MC_UU_12014/12), WT (220977/Z/20/Z) and UKRI G2P (MR/W005611/1). Please contact Richard Orton with any queries: Richard.Orton@glasgow.ac.uk
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