CoV-GLUE | Mutations | Mutation

CoV-GLUE Mutation: ORF = ORF1ab/nsp3 : CodonNum = 1159 & Codon = ccT

Details of the codons used for the mutation across all lineages (CodonProp is the proportion each codon is used for this AA mutation):

ORFCodonNumMutORF1abMutMutTypeRefCodonMutCodonAACountCodonCountCodonPropGenome Position
ORF1ab/nsp31159P1159PP1977PsynccCccT15090149160.9884696194-6196

Details of the mutation no within lineages (LineageCodonProp is the proportion the codon is observed at, at this particular site, on each lineage):

ORFCodonNumMutRefCodonMutCodonCodonCountAACountLineageLineageCodonProp
ORF1ab/nsp31159P1159PccCccT1491615090All0.002853
ORF1ab/nsp31159P1159PccCccT49715020B.1.1.70.00445
ORF1ab/nsp31159P1159PccCccT16111623B.1.20.014185
ORF1ab/nsp31159P1159PccCccT14901504AY.30.01482
ORF1ab/nsp31159P1159PccCccT12591262AY.440.007663
ORF1ab/nsp31159P1159PccCccT11181128B.1.617.20.00421
ORF1ab/nsp31159P1159PccCccT586588AY.1020.015537
ORF1ab/nsp31159P1159PccCccT506516AY.40.000788
ORF1ab/nsp31159P1159PccCccT291292AY.390.007191
ORF1ab/nsp31159P1159PccCccT248251AY.430.001099
ORF1ab/nsp31159P1159PccCccT188193AY.250.001131
ORF1ab/nsp31159P1159PccCccT162162AY.9.10.013563
ORF1ab/nsp31159P1159PccCccT145147P.10.002284
ORF1ab/nsp31159P1159PccCccT103106B.10.000943
ORF1ab/nsp31159P1159PccCccT95100AY.1030.00059
ORF1ab/nsp31159P1159PccCccT9191B.1.2430.006332
ORF1ab/nsp31159P1159PccCccT8888AY.1200.003272
ORF1ab/nsp31159P1159PccCccT7677B.1.5260.001786
ORF1ab/nsp31159P1159PccCccT6165B.1.10.001107
ORF1ab/nsp31159P1159PccCccT4565B.1.1.5190.001787
ORF1ab/nsp31159P1159PccCccT5858AY.4.20.001258
ORF1ab/nsp31159P1159PccCccT5757B.1.4290.001341
ORF1ab/nsp31159P1159PccCccT5353B.1.4080.195572
ORF1ab/nsp31159P1159PccCccT4648B.1.1770.000606
ORF1ab/nsp31159P1159PccCccT4242AY.980.003318
ORF1ab/nsp31159P1159PccCccT3939AY.470.001213
ORF1ab/nsp31159P1159PccCccT3838B.1.177.860.006971
ORF1ab/nsp31159P1159PccCccT3535B.1.5410.154867
ORF1ab/nsp31159P1159PccCccT3434B.1.4440.539683
ORF1ab/nsp31159P1159PccCccT3333B.1.3510.000981
ORF1ab/nsp31159P1159PccCccT3031AY.200.001166
ORF1ab/nsp31159P1159PccCccT3031B.1.2210.002131
ORF1ab/nsp31159P1159PccCccT3131B.1.258.170.003223
ORF1ab/nsp31159P1159PccCccT3131B.1.5250.003508
ORF1ab/nsp31159P1159PccCccT3030B.1.4270.001515
ORF1ab/nsp31159P1159PccCccT2828P.1.150.006506
ORF1ab/nsp31159P1159PccCccT2627AY.1130.003702
ORF1ab/nsp31159P1159PccCccT2727AY.460.00281
ORF1ab/nsp31159P1159PccCccT2727AY.730.017964
ORF1ab/nsp31159P1159PccCccT2525AY.910.018262
ORF1ab/nsp31159P1159PccCccT2323AY.420.000925
ORF1ab/nsp31159P1159PccCccT2223AY.50.000454
ORF1ab/nsp31159P1159PccCccT2323B.1.177.770.016703
ORF1ab/nsp31159P1159PccCccT2223P.20.004106
ORF1ab/nsp31159P1159PccCccT2121AY.450.002555
ORF1ab/nsp31159P1159PccCccT2121B.1.1.4860.033123
ORF1ab/nsp31159P1159PccCccT2020AY.1190.000706
ORF1ab/nsp31159P1159PccCccT2020AY.46.60.001444
ORF1ab/nsp31159P1159PccCccT2020B.1.360.002918
ORF1ab/nsp31159P1159PccCccT1819AY.1000.000828
ORF1ab/nsp31159P1159PccCccT1919AY.290.0003
ORF1ab/nsp31159P1159PccCccT1919B.1.1.390.009684
ORF1ab/nsp31159P1159PccCccT1818AY.260.00051
ORF1ab/nsp31159P1159PccCccT1717C.331
ORF1ab/nsp31159P1159PccCccT1616AU.10.020253
ORF1ab/nsp31159P1159PccCccT1616AY.39.10.000634
ORF1ab/nsp31159P1159PccCccT1616Q.20.009816
ORF1ab/nsp31159P1159PccCccT1515P.1.130.013477
ORF1ab/nsp31159P1159PccCccT1414AY.1140.003235
ORF1ab/nsp31159P1159PccCccT1414B.1.1600.000437
ORF1ab/nsp31159P1159PccCccT1414B.1.2360.028747
ORF1ab/nsp31159P1159PccCccT1414B.1.2580.000932
ORF1ab/nsp31159P1159PccCccT1313AY.1180.000814
ORF1ab/nsp31159P1159PccCccT1212AY.99.20.001106
ORF1ab/nsp31159P1159PccCccT1212P.1.140.000574
ORF1ab/nsp31159P1159PccCccT1111AY.840.004812
ORF1ab/nsp31159P1159PccCccT910AY.230.000628
ORF1ab/nsp31159P1159PccCccT1010AY.610.001048
ORF1ab/nsp31159P1159PccCccT1010AY.950.00761
ORF1ab/nsp31159P1159PccCccT1010AY.98.10.000484
ORF1ab/nsp31159P1159PccCccT1010B.1.6210.000885
ORF1ab/nsp31159P1159PccCccT1010Q.10.001263
ORF1ab/nsp31159P1159PccCccT99AY.90.000608
ORF1ab/nsp31159P1159PccCccT99B.1.1.3110.003223
ORF1ab/nsp31159P1159PccCccT89B.1.5960.000697
ORF1ab/nsp31159P1159PccCccT99B.1.6090.004314
ORF1ab/nsp31159P1159PccCccT88AY.1050.005145
ORF1ab/nsp31159P1159PccCccT88AY.1070.003728
ORF1ab/nsp31159P1159PccCccT88AY.300.003166
ORF1ab/nsp31159P1159PccCccT78AY.750.000392
ORF1ab/nsp31159P1159PccCccT88B.1.1.2240.114286
ORF1ab/nsp31159P1159PccCccT88B.1.177.190.011445
ORF1ab/nsp31159P1159PccCccT88B.1.177.360.129032
ORF1ab/nsp31159P1159PccCccT78D.20.000525
ORF1ab/nsp31159P1159PccCccT77AY.270.000453
ORF1ab/nsp31159P1159PccCccT77AY.46.20.004447
ORF1ab/nsp31159P1159PccCccT77B.1.3050.015054
ORF1ab/nsp31159P1159PccCccT77B.1.6300.036649
ORF1ab/nsp31159P1159PccCccT66AY.29.10.001323
ORF1ab/nsp31159P1159PccCccT66AY.3.10.000512
ORF1ab/nsp31159P1159PccCccT66AY.330.000401
ORF1ab/nsp31159P1159PccCccT66AY.970.010204
ORF1ab/nsp31159P1159PccCccT66B.1.1.280.001867
ORF1ab/nsp31159P1159PccCccT66B.1.36.10.006842
ORF1ab/nsp31159P1159PccCccT66P.1.120.002904
ORF1ab/nsp31159P1159PccCccT55AY.1090.003698
ORF1ab/nsp31159P1159PccCccT55AY.1160.001434
ORF1ab/nsp31159P1159PccCccT55AY.1170.000423
ORF1ab/nsp31159P1159PccCccT55AY.140.00044
ORF1ab/nsp31159P1159PccCccT55AY.16.10.00235
ORF1ab/nsp31159P1159PccCccT55AY.34.10.00255
ORF1ab/nsp31159P1159PccCccT45AY.46.40.000658
ORF1ab/nsp31159P1159PccCccT55B.1.1.2650.015773
ORF1ab/nsp31159P1159PccCccT55B.1.1.2840.000537
ORF1ab/nsp31159P1159PccCccT55B.1.1.2910.003712
ORF1ab/nsp31159P1159PccCccT45B.1.617.10.000516
ORF1ab/nsp31159P1159PccCccT55C.370.00058
ORF1ab/nsp31159P1159PccCccT44A.10.001127
ORF1ab/nsp31159P1159PccCccT44A.2.50.001996
ORF1ab/nsp31159P1159PccCccT44AY.210.00759
ORF1ab/nsp31159P1159PccCccT44AY.5.40.001107
ORF1ab/nsp31159P1159PccCccT44AY.540.000381
ORF1ab/nsp31159P1159PccCccT44AY.70.000784
ORF1ab/nsp31159P1159PccCccT44AY.790.004843
ORF1ab/nsp31159P1159PccCccT44AY.990.004197
ORF1ab/nsp31159P1159PccCccT44B.1.1.2220.000816
ORF1ab/nsp31159P1159PccCccT44B.1.1.330.001684
ORF1ab/nsp31159P1159PccCccT14B.1.1.3480.000796
ORF1ab/nsp31159P1159PccCccT44B.1.1.370.000771
ORF1ab/nsp31159P1159PccCccT44B.1.1.5260.014184
ORF1ab/nsp31159P1159PccCccT44B.1.2340.000528
ORF1ab/nsp31159P1159PccCccT44B.1.36.290.002069
ORF1ab/nsp31159P1159PccCccT44B.1.5610.001588
ORF1ab/nsp31159P1159PccCccT44B.1.6280.001409
ORF1ab/nsp31159P1159PccCccT44P.1.170.000647
ORF1ab/nsp31159P1159PccCccT33AY.1060.001005
ORF1ab/nsp31159P1159PccCccT33AY.1110.000549
ORF1ab/nsp31159P1159PccCccT33AY.60.000123
ORF1ab/nsp31159P1159PccCccT33AY.640.001786
ORF1ab/nsp31159P1159PccCccT33AY.75.10.000541
ORF1ab/nsp31159P1159PccCccT33AY.850.001282
ORF1ab/nsp31159P1159PccCccT33AY.880.002653
ORF1ab/nsp31159P1159PccCccT33AY.9.20.00011
ORF1ab/nsp31159P1159PccCccT33B.1.1.1360.06383
ORF1ab/nsp31159P1159PccCccT33B.1.1.270.016949
ORF1ab/nsp31159P1159PccCccT33B.1.1.2800.009259
ORF1ab/nsp31159P1159PccCccT33B.1.1.40.008929
ORF1ab/nsp31159P1159PccCccT33B.1.1.750.031915
ORF1ab/nsp31159P1159PccCccT33B.1.1280.001906
ORF1ab/nsp31159P1159PccCccT33B.1.177.420.002683
ORF1ab/nsp31159P1159PccCccT23B.1.177.730.001133
ORF1ab/nsp31159P1159PccCccT33B.1.36.180.001261
ORF1ab/nsp31159P1159PccCccT33B.1.5640.001278
ORF1ab/nsp31159P1159PccCccT33B.1.564.10.004732
ORF1ab/nsp31159P1159PccCccT33B.1.6190.002613
ORF1ab/nsp31159P1159PccCccT33B.1.6200.002838
ORF1ab/nsp31159P1159PccCccT33C.140.012987
ORF1ab/nsp31159P1159PccCccT33C.160.003181
ORF1ab/nsp31159P1159PccCccT33Q.80.000495
ORF1ab/nsp31159P1159PccCccT33R.10.00027
ORF1ab/nsp31159P1159PccCccT120.055556
ORF1ab/nsp31159P1159PccCccT22A.290.010638
ORF1ab/nsp31159P1159PccCccT22AY.120.10.000642
ORF1ab/nsp31159P1159PccCccT22AY.1210.000271
ORF1ab/nsp31159P1159PccCccT22AY.320.001065
ORF1ab/nsp31159P1159PccCccT22AY.340.000194
ORF1ab/nsp31159P1159PccCccT22AY.4.40.000818
ORF1ab/nsp31159P1159PccCccT22AY.400.001929
ORF1ab/nsp31159P1159PccCccT22AY.480.00093
ORF1ab/nsp31159P1159PccCccT22AY.5.30.000675
ORF1ab/nsp31159P1159PccCccT22AY.560.00321
ORF1ab/nsp31159P1159PccCccT12AY.690.000187
ORF1ab/nsp31159P1159PccCccT22AY.820.002714
ORF1ab/nsp31159P1159PccCccT22AY.870.001665
ORF1ab/nsp31159P1159PccCccT22AY.960.004149
ORF1ab/nsp31159P1159PccCccT12B0.000128
ORF1ab/nsp31159P1159PccCccT22B.1.1.10.000653
ORF1ab/nsp31159P1159PccCccT22B.1.1.2140.000111
ORF1ab/nsp31159P1159PccCccT22B.1.1.3060.000877
ORF1ab/nsp31159P1159PccCccT22B.1.1.3180.000604
ORF1ab/nsp31159P1159PccCccT22B.1.1.4640.002946
ORF1ab/nsp31159P1159PccCccT22B.1.1.700.000682
ORF1ab/nsp31159P1159PccCccT22B.1.177.690.002967
ORF1ab/nsp31159P1159PccCccT22B.1.177.820.000955
ORF1ab/nsp31159P1159PccCccT22B.1.2220.003384
ORF1ab/nsp31159P1159PccCccT22B.1.258.140.001961
ORF1ab/nsp31159P1159PccCccT22B.1.36.260.005714
ORF1ab/nsp31159P1159PccCccT22B.1.36.90.006431
ORF1ab/nsp31159P1159PccCccT22B.1.3670.001585
ORF1ab/nsp31159P1159PccCccT22B.1.3690.00057
ORF1ab/nsp31159P1159PccCccT22B.1.3890.002004
ORF1ab/nsp31159P1159PccCccT22B.1.4280.002041
ORF1ab/nsp31159P1159PccCccT22B.1.438.10.000215
ORF1ab/nsp31159P1159PccCccT22B.1.466.20.000782
ORF1ab/nsp31159P1159PccCccT22B.1.4990.002101
ORF1ab/nsp31159P1159PccCccT22B.1.5950.000522
ORF1ab/nsp31159P1159PccCccT22C.360.001821
ORF1ab/nsp31159P1159PccCccT22P.1.100.000539
ORF1ab/nsp31159P1159PccCccT22P.1.20.002312
ORF1ab/nsp31159P1159PccCccT22P.50.027397
ORF1ab/nsp31159P1159PccCccT11A.2.5.10.004808
ORF1ab/nsp31159P1159PccCccT11AH.30.003802
ORF1ab/nsp31159P1159PccCccT11AV.10.005051
ORF1ab/nsp31159P1159PccCccT11AY.1040.001984
ORF1ab/nsp31159P1159PccCccT11AY.1100.000113
ORF1ab/nsp31159P1159PccCccT11AY.116.10.000311
ORF1ab/nsp31159P1159PccCccT11AY.130.000161
ORF1ab/nsp31159P1159PccCccT11AY.20.000356
ORF1ab/nsp31159P1159PccCccT11AY.240.000431
ORF1ab/nsp31159P1159PccCccT11AY.360.000148
ORF1ab/nsp31159P1159PccCccT11AY.370.000316
ORF1ab/nsp31159P1159PccCccT11AY.380.000499
ORF1ab/nsp31159P1159PccCccT11AY.4.50.000107
ORF1ab/nsp31159P1159PccCccT11AY.410.000294
ORF1ab/nsp31159P1159PccCccT11AY.46.10.001027
ORF1ab/nsp31159P1159PccCccT11AY.46.50.000198
ORF1ab/nsp31159P1159PccCccT11AY.510.000909
ORF1ab/nsp31159P1159PccCccT11AY.580.000907
ORF1ab/nsp31159P1159PccCccT11AY.590.00053
ORF1ab/nsp31159P1159PccCccT11AY.600.000938
ORF1ab/nsp31159P1159PccCccT11AY.620.000436
ORF1ab/nsp31159P1159PccCccT11AY.7.10.000113
ORF1ab/nsp31159P1159PccCccT11AY.710.000475
ORF1ab/nsp31159P1159PccCccT11AY.740.000116
ORF1ab/nsp31159P1159PccCccT11AY.770.001127
ORF1ab/nsp31159P1159PccCccT11AY.800.001129
ORF1ab/nsp31159P1159PccCccT11AY.860.00083
ORF1ab/nsp31159P1159PccCccT11AY.920.000287
ORF1ab/nsp31159P1159PccCccT11AY.930.000273
ORF1ab/nsp31159P1159PccCccT11AZ.20.000821
ORF1ab/nsp31159P1159PccCccT11B.1.1.100.001115
ORF1ab/nsp31159P1159PccCccT11B.1.1.2050.003717
ORF1ab/nsp31159P1159PccCccT11B.1.1.2270.004348
ORF1ab/nsp31159P1159PccCccT11B.1.1.2740.005051
ORF1ab/nsp31159P1159PccCccT11B.1.1.2860.002899
ORF1ab/nsp31159P1159PccCccT11B.1.1.2890.002083
ORF1ab/nsp31159P1159PccCccT11B.1.1.3020.002075
ORF1ab/nsp31159P1159PccCccT11B.1.1.3030.002762
ORF1ab/nsp31159P1159PccCccT11B.1.1.3080.011765
ORF1ab/nsp31159P1159PccCccT11B.1.1.3120.001912
ORF1ab/nsp31159P1159PccCccT11B.1.1.3620.005618
ORF1ab/nsp31159P1159PccCccT11B.1.1.3710.010417
ORF1ab/nsp31159P1159PccCccT11B.1.1.3870.058824
ORF1ab/nsp31159P1159PccCccT11B.1.1.4090.002833
ORF1ab/nsp31159P1159PccCccT11B.1.1.4340.000349
ORF1ab/nsp31159P1159PccCccT11B.1.1.4480.002033
ORF1ab/nsp31159P1159PccCccT11B.1.1.4850.016667
ORF1ab/nsp31159P1159PccCccT11B.1.1.50.008333
ORF1ab/nsp31159P1159PccCccT11B.1.1.5240.020833
ORF1ab/nsp31159P1159PccCccT11B.1.1.5250.005464
ORF1ab/nsp31159P1159PccCccT11B.1.1.580.005376
ORF1ab/nsp31159P1159PccCccT11B.1.1110.001175
ORF1ab/nsp31159P1159PccCccT11B.1.1190.010526
ORF1ab/nsp31159P1159PccCccT11B.1.130.002375
ORF1ab/nsp31159P1159PccCccT11B.1.1400.018868
ORF1ab/nsp31159P1159PccCccT11B.1.160.140.002119
ORF1ab/nsp31159P1159PccCccT11B.1.160.280.002924
ORF1ab/nsp31159P1159PccCccT11B.1.1690.014925
ORF1ab/nsp31159P1159PccCccT11B.1.177.170.000821
ORF1ab/nsp31159P1159PccCccT11B.1.177.180.00116
ORF1ab/nsp31159P1159PccCccT11B.1.177.210.000076
ORF1ab/nsp31159P1159PccCccT11B.1.177.40.000211
ORF1ab/nsp31159P1159PccCccT11B.1.177.50.001242
ORF1ab/nsp31159P1159PccCccT11B.1.177.540.000606
ORF1ab/nsp31159P1159PccCccT11B.1.177.570.000281
ORF1ab/nsp31159P1159PccCccT11B.1.177.80.000752
ORF1ab/nsp31159P1159PccCccT11B.1.2060.000816
ORF1ab/nsp31159P1159PccCccT11B.1.2180.005155
ORF1ab/nsp31159P1159PccCccT11B.1.2350.002519
ORF1ab/nsp31159P1159PccCccT11B.1.2370.004975
ORF1ab/nsp31159P1159PccCccT11B.1.2390.001221
ORF1ab/nsp31159P1159PccCccT11B.1.2470.014925
ORF1ab/nsp31159P1159PccCccT11B.1.258.30.001675
ORF1ab/nsp31159P1159PccCccT11B.1.258.40.003448
ORF1ab/nsp31159P1159PccCccT11B.1.2600.003344
ORF1ab/nsp31159P1159PccCccT11B.1.3110.000275
ORF1ab/nsp31159P1159PccCccT11B.1.3430.020833
ORF1ab/nsp31159P1159PccCccT11B.1.3460.001311
ORF1ab/nsp31159P1159PccCccT11B.1.351.30.000876
ORF1ab/nsp31159P1159PccCccT11B.1.3570.009524
ORF1ab/nsp31159P1159PccCccT11B.1.36.170.000494
ORF1ab/nsp31159P1159PccCccT11B.1.3850.010638
ORF1ab/nsp31159P1159PccCccT11B.1.3990.001934
ORF1ab/nsp31159P1159PccCccT11B.1.4130.004255
ORF1ab/nsp31159P1159PccCccT11B.1.4210.007463
ORF1ab/nsp31159P1159PccCccT11B.1.4220.000812
ORF1ab/nsp31159P1159PccCccT11B.1.4560.003268
ORF1ab/nsp31159P1159PccCccT11B.1.4700.001404
ORF1ab/nsp31159P1159PccCccT11B.1.5090.000866
ORF1ab/nsp31159P1159PccCccT11B.1.5170.000427
ORF1ab/nsp31159P1159PccCccT11B.1.5240.001406
ORF1ab/nsp31159P1159PccCccT11B.1.5300.007143
ORF1ab/nsp31159P1159PccCccT11B.1.5510.00129
ORF1ab/nsp31159P1159PccCccT11B.1.5650.00081
ORF1ab/nsp31159P1159PccCccT11B.1.5750.000303
ORF1ab/nsp31159P1159PccCccT11B.1.5760.000907
ORF1ab/nsp31159P1159PccCccT11B.1.5800.004065
ORF1ab/nsp31159P1159PccCccT11B.1.6010.030303
ORF1ab/nsp31159P1159PccCccT11B.1.6120.002653
ORF1ab/nsp31159P1159PccCccT11B.1.9.50.005682
ORF1ab/nsp31159P1159PccCccT11B.1.910.002075
ORF1ab/nsp31159P1159PccCccT11C.300.001727
ORF1ab/nsp31159P1159PccCccT11C.36.10.004149
ORF1ab/nsp31159P1159PccCccT11C.36.30.000567
ORF1ab/nsp31159P1159PccCccT11N.50.001767
ORF1ab/nsp31159P1159PccCccT11P.1.10.000318
ORF1ab/nsp31159P1159PccCccT11P.1.70.000319
ORF1ab/nsp31159P1159PccCccT11P.30.001595