CoV-GLUE | Mutations | Mutation
Details of the codons used for the mutation across all lineages (CodonProp is the proportion each codon is used for this AA mutation):
ORF | CodonNum | Mut | ORF1abMut | MutType | RefCodon | MutCodon | AACount | CodonCount | CodonProp | Genome Position |
ORF1ab/nsp3 | 1144 | D1144D | D1962D | syn | gaC | gaT | 1083 | 1083 | 1 | 6149-6151 |
ORF1ab/nsp3 | 1144 | D1144N | D1962N | nonsyn | Gac | Aac | 121 | 120 | 0.991736 | 6149-6151 |
ORF1ab/nsp3 | 1144 | D1144N | D1962N | nonsyn | GaC | AaT | 121 | 1 | 0.00826446 | 6149-6151 |
ORF1ab/nsp3 | 1144 | D1144E | D1962E | nonsyn | gaC | gaA | 98 | 95 | 0.969388 | 6149-6151 |
ORF1ab/nsp3 | 1144 | D1144E | D1962E | nonsyn | gaC | gaG | 98 | 3 | 0.0306122 | 6149-6151 |
ORF1ab/nsp3 | 1144 | D1144Y | D1962Y | nonsyn | Gac | Tac | 60 | 59 | 0.983333 | 6149-6151 |
ORF1ab/nsp3 | 1144 | D1144Y | D1962Y | nonsyn | GaC | TaT | 60 | 1 | 0.0166667 | 6149-6151 |
ORF1ab/nsp3 | 1144 | D1144A | D1962A | nonsyn | gAc | gCc | 46 | 46 | 1 | 6149-6151 |
ORF1ab/nsp3 | 1144 | D1144del | D1962del | del | GAC | --- | 44 | 44 | 1 | 6149-6151 |
ORF1ab/nsp3 | 1144 | D1144V | D1962V | nonsyn | gAc | gTc | 25 | 24 | 0.96 | 6149-6151 |
ORF1ab/nsp3 | 1144 | D1144V | D1962V | nonsyn | gAC | gTT | 25 | 1 | 0.04 | 6149-6151 |
ORF1ab/nsp3 | 1144 | D1144G | D1962G | nonsyn | gAc | gGc | 21 | 8 | 0.380952 | 6149-6151 |
ORF1ab/nsp3 | 1144 | D1144G | D1962G | nonsyn | gAC | gGT | 21 | 7 | 0.333333 | 6149-6151 |
ORF1ab/nsp3 | 1144 | D1144G | D1962G | nonsyn | gAC | gGG | 21 | 6 | 0.285714 | 6149-6151 |
ORF1ab/nsp3 | 1144 | D1144F | D1962F | nonsyn | GAc | TTc | 18 | 18 | 1 | 6149-6151 |
ORF1ab/nsp3 | 1144 | D1144H | D1962H | nonsyn | Gac | Cac | 4 | 4 | 1 | 6149-6151 |
ORF1ab/nsp3 | 1144 | D1144Q | D1962Q | nonsyn | GaC | CaG | 3 | 3 | 1 | 6149-6151 |
ORF1ab/nsp3 | 1144 | D1144S | D1962S | nonsyn | GAc | AGc | 3 | 2 | 0.666667 | 6149-6151 |
ORF1ab/nsp3 | 1144 | D1144S | D1962S | nonsyn | GAC | AGT | 3 | 1 | 0.333333 | 6149-6151 |
ORF1ab/nsp3 | 1144 | D1144R | D1962R | nonsyn | GAC | CGT | 2 | 2 | 1 | 6149-6151 |
ORF1ab/nsp3 | 1144 | D1144I | D1962I | nonsyn | GAC | ATT | 1 | 1 | 1 | 6149-6151 |
Details of the mutation no within lineages (LineageCodonProp is the proportion the codon is observed at, at this particular site, on each lineage):
ORF | CodonNum | Mut | RefCodon | MutCodon | CodonCount | AACount | Lineage | LineageCodonProp |
ORF1ab/nsp3 | 1144 | D1144D | gaC | gaT | 1083 | 1083 | All | 0.000207 |
ORF1ab/nsp3 | 1144 | D1144D | gaC | gaT | 248 | 248 | B.1.1.7 | 0.000222 |
ORF1ab/nsp3 | 1144 | D1144D | gaC | gaT | 129 | 129 | B.1.2 | 0.001136 |
ORF1ab/nsp3 | 1144 | D1144N | Gac | Aac | 120 | 121 | All | 0.000023 |
ORF1ab/nsp3 | 1144 | D1144N | GaC | AaT | 1 | 121 | All | 0 |
ORF1ab/nsp3 | 1144 | D1144D | gaC | gaT | 119 | 119 | AY.26 | 0.003369 |
ORF1ab/nsp3 | 1144 | D1144E | gaC | gaA | 95 | 98 | All | 0.000018 |
ORF1ab/nsp3 | 1144 | D1144E | gaC | gaG | 3 | 98 | All | 0.000001 |
ORF1ab/nsp3 | 1144 | D1144D | gaC | gaT | 70 | 70 | AY.4 | 0.000109 |
ORF1ab/nsp3 | 1144 | D1144D | gaC | gaT | 68 | 68 | AY.15 | 0.151111 |
ORF1ab/nsp3 | 1144 | D1144Y | Gac | Tac | 59 | 60 | All | 0.000011 |
ORF1ab/nsp3 | 1144 | D1144Y | GaC | TaT | 1 | 60 | All | 0 |
ORF1ab/nsp3 | 1144 | D1144D | gaC | gaT | 57 | 57 | P.1 | 0.000898 |
ORF1ab/nsp3 | 1144 | D1144A | gAc | gCc | 46 | 46 | All | 0.000009 |
ORF1ab/nsp3 | 1144 | D1144del | GAC | --- | 44 | 44 | All | 0.000008 |
ORF1ab/nsp3 | 1144 | D1144D | gaC | gaT | 41 | 41 | AY.25 | 0.000247 |
ORF1ab/nsp3 | 1144 | D1144D | gaC | gaT | 35 | 35 | AY.44 | 0.000213 |
ORF1ab/nsp3 | 1144 | D1144E | gaC | gaA | 26 | 26 | B.1.1.450 | 0.896552 |
ORF1ab/nsp3 | 1144 | D1144V | gAc | gTc | 24 | 25 | All | 0.000005 |
ORF1ab/nsp3 | 1144 | D1144V | gAC | gTT | 1 | 25 | All | 0 |
ORF1ab/nsp3 | 1144 | D1144A | gAc | gCc | 23 | 23 | B.1.177 | 0.000303 |
ORF1ab/nsp3 | 1144 | D1144N | Gac | Aac | 23 | 23 | B.1.369 | 0.00656 |
ORF1ab/nsp3 | 1144 | D1144G | gAc | gGc | 8 | 21 | All | 0.000002 |
ORF1ab/nsp3 | 1144 | D1144G | gAC | gGT | 7 | 21 | All | 0.000001 |
ORF1ab/nsp3 | 1144 | D1144G | gAC | gGG | 6 | 21 | All | 0.000001 |
ORF1ab/nsp3 | 1144 | D1144D | gaC | gaT | 19 | 19 | B.1.627 | 0.038384 |
ORF1ab/nsp3 | 1144 | D1144F | GAc | TTc | 18 | 18 | All | 0.000003 |
ORF1ab/nsp3 | 1144 | D1144D | gaC | gaT | 18 | 18 | B.1.617.2 | 0.000068 |
ORF1ab/nsp3 | 1144 | D1144D | gaC | gaT | 16 | 16 | B.1.1.389 | 0.09697 |
ORF1ab/nsp3 | 1144 | D1144N | Gac | Aac | 15 | 15 | B.1.617.2 | 0.000056 |
ORF1ab/nsp3 | 1144 | D1144N | Gac | Aac | 13 | 13 | AY.3 | 0.000129 |
ORF1ab/nsp3 | 1144 | D1144D | gaC | gaT | 13 | 13 | AY.43 | 0.000058 |
ORF1ab/nsp3 | 1144 | D1144Y | Gac | Tac | 13 | 13 | AY.61 | 0.001362 |
ORF1ab/nsp3 | 1144 | D1144N | Gac | Aac | 12 | 12 | AY.4 | 0.000019 |
ORF1ab/nsp3 | 1144 | D1144D | gaC | gaT | 12 | 12 | AY.9.1 | 0.001005 |
ORF1ab/nsp3 | 1144 | D1144N | Gac | Aac | 11 | 11 | AY.102 | 0.000292 |
ORF1ab/nsp3 | 1144 | D1144D | gaC | gaT | 11 | 11 | AY.118 | 0.000689 |
ORF1ab/nsp3 | 1144 | D1144D | gaC | gaT | 11 | 11 | AY.29 | 0.000174 |
ORF1ab/nsp3 | 1144 | D1144del | GAC | --- | 11 | 11 | B.1.1.7 | 0.00001 |
ORF1ab/nsp3 | 1144 | D1144E | gaC | gaA | 10 | 10 | AY.4 | 0.000016 |
ORF1ab/nsp3 | 1144 | D1144D | gaC | gaT | 10 | 10 | AY.9 | 0.000676 |
ORF1ab/nsp3 | 1144 | D1144F | GAc | TTc | 9 | 9 | B.1.1.7 | 0.000008 |
ORF1ab/nsp3 | 1144 | D1144D | gaC | gaT | 9 | 9 | B.1.177 | 0.000119 |
ORF1ab/nsp3 | 1144 | D1144D | gaC | gaT | 9 | 9 | B.1.466.2 | 0.003521 |
ORF1ab/nsp3 | 1144 | D1144D | gaC | gaT | 9 | 9 | B.40 | 0.003279 |
ORF1ab/nsp3 | 1144 | D1144D | gaC | gaT | 8 | 8 | AJ.1 | 0.363636 |
ORF1ab/nsp3 | 1144 | D1144A | gAc | gCc | 8 | 8 | AY.4 | 0.000012 |
ORF1ab/nsp3 | 1144 | D1144D | gaC | gaT | 8 | 8 | B.1 | 0.000073 |
ORF1ab/nsp3 | 1144 | D1144E | gaC | gaA | 8 | 8 | B.1.1.10 | 0.008919 |
ORF1ab/nsp3 | 1144 | D1144D | gaC | gaT | 8 | 8 | B.1.1.519 | 0.000318 |
ORF1ab/nsp3 | 1144 | D1144V | gAc | gTc | 8 | 8 | B.1.1.7 | 0.000007 |
ORF1ab/nsp3 | 1144 | D1144E | gaC | gaA | 8 | 8 | B.1.2 | 0.00007 |
ORF1ab/nsp3 | 1144 | D1144D | gaC | gaT | 8 | 8 | B.1.525 | 0.000905 |
ORF1ab/nsp3 | 1144 | D1144E | gaC | gaA | 8 | 8 | B.1.617.2 | 0.00003 |
ORF1ab/nsp3 | 1144 | D1144D | gaC | gaT | 8 | 8 | C.37 | 0.000929 |
ORF1ab/nsp3 | 1144 | D1144D | gaC | gaT | 7 | 7 | AY.102 | 0.000186 |
ORF1ab/nsp3 | 1144 | D1144D | gaC | gaT | 7 | 7 | AY.120 | 0.00026 |
ORF1ab/nsp3 | 1144 | D1144N | Gac | Aac | 7 | 7 | AY.120.1 | 0.002247 |
ORF1ab/nsp3 | 1144 | D1144N | Gac | Aac | 6 | 6 | AY.39 | 0.000148 |
ORF1ab/nsp3 | 1144 | D1144N | Gac | Aac | 6 | 6 | AY.44 | 0.000037 |
ORF1ab/nsp3 | 1144 | D1144Y | Gac | Tac | 6 | 6 | B.1.1.7 | 0.000005 |
ORF1ab/nsp3 | 1144 | D1144D | gaC | gaT | 6 | 6 | B.1.221 | 0.000426 |
ORF1ab/nsp3 | 1144 | D1144Y | Gac | Tac | 6 | 6 | B.1.617.2 | 0.000023 |
ORF1ab/nsp3 | 1144 | D1144V | gAc | gTc | 5 | 5 | AY.25 | 0.00003 |
ORF1ab/nsp3 | 1144 | D1144Y | Gac | Tac | 5 | 5 | AY.44 | 0.00003 |
ORF1ab/nsp3 | 1144 | D1144D | gaC | gaT | 5 | 5 | AY.5 | 0.000103 |
ORF1ab/nsp3 | 1144 | D1144D | gaC | gaT | 5 | 5 | B.1.265 | 0.006353 |
ORF1ab/nsp3 | 1144 | D1144D | gaC | gaT | 5 | 5 | B.1.595 | 0.001305 |
ORF1ab/nsp3 | 1144 | D1144G | gAC | gGT | 4 | 4 | 0.222222 | |
ORF1ab/nsp3 | 1144 | D1144H | Gac | Cac | 4 | 4 | All | 0.000001 |
ORF1ab/nsp3 | 1144 | D1144N | Gac | Aac | 4 | 4 | AY.25 | 0.000024 |
ORF1ab/nsp3 | 1144 | D1144D | gaC | gaT | 4 | 4 | AY.74 | 0.000463 |
ORF1ab/nsp3 | 1144 | D1144D | gaC | gaT | 4 | 4 | B.1.1.217 | 0.014545 |
ORF1ab/nsp3 | 1144 | D1144G | gAC | gGT | 3 | 4 | B.1.1.7 | 0.000003 |
ORF1ab/nsp3 | 1144 | D1144E | gaC | gaA | 3 | 4 | B.1.1.7 | 0.000003 |
ORF1ab/nsp3 | 1144 | D1144G | gAc | gGc | 1 | 4 | B.1.1.7 | 0.000001 |
ORF1ab/nsp3 | 1144 | D1144E | gaC | gaG | 1 | 4 | B.1.1.7 | 0.000001 |
ORF1ab/nsp3 | 1144 | D1144N | Gac | Aac | 4 | 4 | B.1.110.3 | 0.002874 |
ORF1ab/nsp3 | 1144 | D1144D | gaC | gaT | 4 | 4 | P.1.7 | 0.001277 |
ORF1ab/nsp3 | 1144 | D1144Q | GaC | CaG | 3 | 3 | All | 0.000001 |
ORF1ab/nsp3 | 1144 | D1144S | GAc | AGc | 2 | 3 | All | 0 |
ORF1ab/nsp3 | 1144 | D1144S | GAC | AGT | 1 | 3 | All | 0 |
ORF1ab/nsp3 | 1144 | D1144A | gAc | gCc | 3 | 3 | AY.103 | 0.000019 |
ORF1ab/nsp3 | 1144 | D1144del | GAC | --- | 3 | 3 | AY.25 | 0.000018 |
ORF1ab/nsp3 | 1144 | D1144D | gaC | gaT | 3 | 3 | AY.39 | 0.000074 |
ORF1ab/nsp3 | 1144 | D1144D | gaC | gaT | 3 | 3 | AY.39.2 | 0.004622 |
ORF1ab/nsp3 | 1144 | D1144E | gaC | gaA | 3 | 3 | AY.43 | 0.000013 |
ORF1ab/nsp3 | 1144 | D1144E | gaC | gaA | 3 | 3 | AY.44 | 0.000018 |
ORF1ab/nsp3 | 1144 | D1144Y | Gac | Tac | 3 | 3 | AY.47 | 0.000093 |
ORF1ab/nsp3 | 1144 | D1144D | gaC | gaT | 3 | 3 | AY.61 | 0.000314 |
ORF1ab/nsp3 | 1144 | D1144Y | Gac | Tac | 3 | 3 | B.1 | 0.000027 |
ORF1ab/nsp3 | 1144 | D1144E | gaC | gaA | 3 | 3 | B.1.1 | 0.000054 |
ORF1ab/nsp3 | 1144 | D1144N | Gac | Aac | 3 | 3 | B.1.1.7 | 0.000003 |
ORF1ab/nsp3 | 1144 | D1144A | gAc | gCc | 3 | 3 | B.1.243 | 0.000209 |
ORF1ab/nsp3 | 1144 | D1144V | gAc | gTc | 3 | 3 | B.1.526 | 0.000071 |
ORF1ab/nsp3 | 1144 | D1144D | gaC | gaT | 3 | 3 | B.1.575 | 0.00091 |
ORF1ab/nsp3 | 1144 | D1144E | gaC | gaA | 3 | 3 | B.1.588 | 0.00273 |
ORF1ab/nsp3 | 1144 | D1144G | gAC | gGG | 2 | 3 | B.1.617.2 | 0.000008 |
ORF1ab/nsp3 | 1144 | D1144G | gAc | gGc | 1 | 3 | B.1.617.2 | 0.000004 |
ORF1ab/nsp3 | 1144 | D1144N | Gac | Aac | 3 | 3 | P.1 | 0.000047 |
ORF1ab/nsp3 | 1144 | D1144S | GAc | AGc | 2 | 2 | 0.111111 | |
ORF1ab/nsp3 | 1144 | D1144Q | GaC | CaG | 2 | 2 | 0.111111 | |
ORF1ab/nsp3 | 1144 | D1144R | GAC | CGT | 2 | 2 | All | 0 |
ORF1ab/nsp3 | 1144 | D1144D | gaC | gaT | 2 | 2 | AY.103 | 0.000012 |
ORF1ab/nsp3 | 1144 | D1144D | gaC | gaT | 2 | 2 | AY.14 | 0.000176 |
ORF1ab/nsp3 | 1144 | D1144E | gaC | gaA | 2 | 2 | AY.20 | 0.000078 |
ORF1ab/nsp3 | 1144 | D1144D | gaC | gaT | 2 | 2 | AY.3 | 0.00002 |
ORF1ab/nsp3 | 1144 | D1144D | gaC | gaT | 2 | 2 | AY.38 | 0.000999 |
ORF1ab/nsp3 | 1144 | D1144del | GAC | --- | 2 | 2 | AY.4 | 0.000003 |
ORF1ab/nsp3 | 1144 | D1144D | gaC | gaT | 2 | 2 | AY.42 | 0.00008 |
ORF1ab/nsp3 | 1144 | D1144N | Gac | Aac | 2 | 2 | AY.6 | 0.000082 |
ORF1ab/nsp3 | 1144 | D1144D | gaC | gaT | 2 | 2 | AY.69 | 0.000373 |
ORF1ab/nsp3 | 1144 | D1144E | gaC | gaA | 2 | 2 | AY.75 | 0.000112 |
ORF1ab/nsp3 | 1144 | D1144D | gaC | gaT | 2 | 2 | B | 0.000256 |
ORF1ab/nsp3 | 1144 | D1144E | gaC | gaA | 2 | 2 | B.1 | 0.000018 |
ORF1ab/nsp3 | 1144 | D1144D | gaC | gaT | 2 | 2 | B.1.1.353 | 0.041667 |
ORF1ab/nsp3 | 1144 | D1144D | gaC | gaT | 2 | 2 | B.1.160 | 0.000062 |
ORF1ab/nsp3 | 1144 | D1144Y | Gac | Tac | 2 | 2 | B.1.177 | 0.000026 |
ORF1ab/nsp3 | 1144 | D1144N | Gac | Aac | 2 | 2 | B.1.2 | 0.000018 |
ORF1ab/nsp3 | 1144 | D1144D | gaC | gaT | 2 | 2 | B.1.258.22 | 0.005333 |
ORF1ab/nsp3 | 1144 | D1144D | gaC | gaT | 2 | 2 | B.1.351 | 0.000059 |
ORF1ab/nsp3 | 1144 | D1144D | gaC | gaT | 2 | 2 | B.1.395 | 0.014085 |
ORF1ab/nsp3 | 1144 | D1144D | gaC | gaT | 2 | 2 | B.1.396 | 0.001411 |
ORF1ab/nsp3 | 1144 | D1144E | gaC | gaA | 2 | 2 | B.1.429 | 0.000047 |
ORF1ab/nsp3 | 1144 | D1144Y | Gac | Tac | 2 | 2 | B.1.596 | 0.000174 |
ORF1ab/nsp3 | 1144 | D1144A | gAc | gCc | 2 | 2 | B.1.623 | 0.001073 |
ORF1ab/nsp3 | 1144 | D1144D | gaC | gaT | 2 | 2 | B.12 | 0.012821 |
ORF1ab/nsp3 | 1144 | D1144del | GAC | --- | 2 | 2 | C.37 | 0.000232 |
ORF1ab/nsp3 | 1144 | D1144V | gAc | gTc | 2 | 2 | P.1 | 0.000032 |
ORF1ab/nsp3 | 1144 | D1144F | GAc | TTc | 2 | 2 | P.1 | 0.000032 |
ORF1ab/nsp3 | 1144 | D1144D | gaC | gaT | 2 | 2 | Q.8 | 0.00033 |
ORF1ab/nsp3 | 1144 | D1144Y | Gac | Tac | 1 | 1 | A | 0.000387 |
ORF1ab/nsp3 | 1144 | D1144D | gaC | gaT | 1 | 1 | A.2 | 0.000662 |
ORF1ab/nsp3 | 1144 | D1144D | gaC | gaT | 1 | 1 | A.25 | 0.018182 |
ORF1ab/nsp3 | 1144 | D1144del | GAC | --- | 1 | 1 | A.28 | 0.002646 |
ORF1ab/nsp3 | 1144 | D1144I | GAC | ATT | 1 | 1 | All | 0 |
ORF1ab/nsp3 | 1144 | D1144Y | Gac | Tac | 1 | 1 | AP.1 | 0.001502 |
ORF1ab/nsp3 | 1144 | D1144D | gaC | gaT | 1 | 1 | AY.100 | 0.000046 |
ORF1ab/nsp3 | 1144 | D1144E | gaC | gaA | 1 | 1 | AY.102 | 0.000027 |
ORF1ab/nsp3 | 1144 | D1144D | gaC | gaT | 1 | 1 | AY.111 | 0.000183 |
ORF1ab/nsp3 | 1144 | D1144G | gAC | gGG | 1 | 1 | AY.113 | 0.000142 |
ORF1ab/nsp3 | 1144 | D1144D | gaC | gaT | 1 | 1 | AY.113 | 0.000142 |
ORF1ab/nsp3 | 1144 | D1144F | GAc | TTc | 1 | 1 | AY.113 | 0.000142 |
ORF1ab/nsp3 | 1144 | D1144D | gaC | gaT | 1 | 1 | AY.117 | 0.000085 |
ORF1ab/nsp3 | 1144 | D1144Y | Gac | Tac | 1 | 1 | AY.117 | 0.000085 |
ORF1ab/nsp3 | 1144 | D1144D | gaC | gaT | 1 | 1 | AY.119 | 0.000035 |
ORF1ab/nsp3 | 1144 | D1144del | GAC | --- | 1 | 1 | AY.120 | 0.000037 |
ORF1ab/nsp3 | 1144 | D1144N | Gac | Aac | 1 | 1 | AY.120 | 0.000037 |
ORF1ab/nsp3 | 1144 | D1144D | gaC | gaT | 1 | 1 | AY.120.2.1 | 0.000498 |
ORF1ab/nsp3 | 1144 | D1144D | gaC | gaT | 1 | 1 | AY.121 | 0.000135 |
ORF1ab/nsp3 | 1144 | D1144Y | Gac | Tac | 1 | 1 | AY.16.1 | 0.00047 |
ORF1ab/nsp3 | 1144 | D1144D | gaC | gaT | 1 | 1 | AY.16.1 | 0.00047 |
ORF1ab/nsp3 | 1144 | D1144D | gaC | gaT | 1 | 1 | AY.19 | 0.00114 |
ORF1ab/nsp3 | 1144 | D1144D | gaC | gaT | 1 | 1 | AY.20 | 0.000039 |
ORF1ab/nsp3 | 1144 | D1144G | gAc | gGc | 1 | 1 | AY.23 | 0.00007 |
ORF1ab/nsp3 | 1144 | D1144N | Gac | Aac | 1 | 1 | AY.23 | 0.00007 |
ORF1ab/nsp3 | 1144 | D1144Y | Gac | Tac | 1 | 1 | AY.25 | 0.000006 |
ORF1ab/nsp3 | 1144 | D1144G | gAc | gGc | 1 | 1 | AY.25 | 0.000006 |
ORF1ab/nsp3 | 1144 | D1144G | gAC | gGG | 1 | 1 | AY.3 | 0.00001 |
ORF1ab/nsp3 | 1144 | D1144del | GAC | --- | 1 | 1 | AY.3 | 0.00001 |
ORF1ab/nsp3 | 1144 | D1144A | gAc | gCc | 1 | 1 | AY.3.1 | 0.000085 |
ORF1ab/nsp3 | 1144 | D1144D | gaC | gaT | 1 | 1 | AY.30 | 0.000396 |
ORF1ab/nsp3 | 1144 | D1144del | GAC | --- | 1 | 1 | AY.33 | 0.000067 |
ORF1ab/nsp3 | 1144 | D1144E | gaC | gaA | 1 | 1 | AY.39 | 0.000025 |
ORF1ab/nsp3 | 1144 | D1144Y | Gac | Tac | 1 | 1 | AY.39 | 0.000025 |
ORF1ab/nsp3 | 1144 | D1144Y | Gac | Tac | 1 | 1 | AY.4 | 0.000002 |
ORF1ab/nsp3 | 1144 | D1144D | gaC | gaT | 1 | 1 | AY.40 | 0.000964 |
ORF1ab/nsp3 | 1144 | D1144G | gAc | gGc | 1 | 1 | AY.43 | 0.000004 |
ORF1ab/nsp3 | 1144 | D1144Y | Gac | Tac | 1 | 1 | AY.43 | 0.000004 |
ORF1ab/nsp3 | 1144 | D1144del | GAC | --- | 1 | 1 | AY.43 | 0.000004 |
ORF1ab/nsp3 | 1144 | D1144A | gAc | gCc | 1 | 1 | AY.44 | 0.000006 |
ORF1ab/nsp3 | 1144 | D1144G | gAC | gGG | 1 | 1 | AY.44 | 0.000006 |
ORF1ab/nsp3 | 1144 | D1144F | GAc | TTc | 1 | 1 | AY.44 | 0.000006 |
ORF1ab/nsp3 | 1144 | D1144V | gAc | gTc | 1 | 1 | AY.44 | 0.000006 |
ORF1ab/nsp3 | 1144 | D1144G | gAC | gGG | 1 | 1 | AY.46.6 | 0.000072 |
ORF1ab/nsp3 | 1144 | D1144E | gaC | gaA | 1 | 1 | AY.46.6 | 0.000072 |
ORF1ab/nsp3 | 1144 | D1144V | gAc | gTc | 1 | 1 | AY.47 | 0.000031 |
ORF1ab/nsp3 | 1144 | D1144D | gaC | gaT | 1 | 1 | AY.47 | 0.000031 |
ORF1ab/nsp3 | 1144 | D1144E | gaC | gaA | 1 | 1 | AY.5 | 0.000021 |
ORF1ab/nsp3 | 1144 | D1144del | GAC | --- | 1 | 1 | AY.54 | 0.000095 |
ORF1ab/nsp3 | 1144 | D1144Y | Gac | Tac | 1 | 1 | AY.54 | 0.000095 |
ORF1ab/nsp3 | 1144 | D1144D | gaC | gaT | 1 | 1 | AY.59 | 0.00053 |
ORF1ab/nsp3 | 1144 | D1144D | gaC | gaT | 1 | 1 | AY.6 | 0.000041 |
ORF1ab/nsp3 | 1144 | D1144del | GAC | --- | 1 | 1 | AY.61 | 0.000105 |
ORF1ab/nsp3 | 1144 | D1144del | GAC | --- | 1 | 1 | AY.66 | 0.00107 |
ORF1ab/nsp3 | 1144 | D1144I | GAC | ATT | 1 | 1 | AY.67 | 0.000464 |
ORF1ab/nsp3 | 1144 | D1144del | GAC | --- | 1 | 1 | AY.67 | 0.000464 |
ORF1ab/nsp3 | 1144 | D1144E | gaC | gaA | 1 | 1 | AY.67 | 0.000464 |
ORF1ab/nsp3 | 1144 | D1144E | gaC | gaA | 1 | 1 | AY.69 | 0.000187 |
ORF1ab/nsp3 | 1144 | D1144E | gaC | gaA | 1 | 1 | AY.74 | 0.000116 |
ORF1ab/nsp3 | 1144 | D1144N | Gac | Aac | 1 | 1 | AY.84 | 0.000437 |
ORF1ab/nsp3 | 1144 | D1144del | GAC | --- | 1 | 1 | AY.84 | 0.000437 |
ORF1ab/nsp3 | 1144 | D1144del | GAC | --- | 1 | 1 | AY.85 | 0.000427 |
ORF1ab/nsp3 | 1144 | D1144E | gaC | gaA | 1 | 1 | AY.9 | 0.000068 |
ORF1ab/nsp3 | 1144 | D1144D | gaC | gaT | 1 | 1 | AY.9.2 | 0.000037 |
ORF1ab/nsp3 | 1144 | D1144G | gAc | gGc | 1 | 1 | AY.9.2 | 0.000037 |
ORF1ab/nsp3 | 1144 | D1144Y | Gac | Tac | 1 | 1 | AY.9.2 | 0.000037 |
ORF1ab/nsp3 | 1144 | D1144D | gaC | gaT | 1 | 1 | AY.98 | 0.000079 |
ORF1ab/nsp3 | 1144 | D1144del | GAC | --- | 1 | 1 | AY.98.1 | 0.000048 |
ORF1ab/nsp3 | 1144 | D1144D | gaC | gaT | 1 | 1 | AY.98.1 | 0.000048 |
ORF1ab/nsp3 | 1144 | D1144G | gAc | gGc | 1 | 1 | AY.99 | 0.001049 |
ORF1ab/nsp3 | 1144 | D1144G | gAc | gGc | 1 | 1 | B.1 | 0.000009 |
ORF1ab/nsp3 | 1144 | D1144del | GAC | --- | 1 | 1 | B.1.1 | 0.000018 |
ORF1ab/nsp3 | 1144 | D1144D | gaC | gaT | 1 | 1 | B.1.1 | 0.000018 |
ORF1ab/nsp3 | 1144 | D1144S | GAC | AGT | 1 | 1 | B.1.1 | 0.000018 |
ORF1ab/nsp3 | 1144 | D1144E | gaC | gaA | 1 | 1 | B.1.1.101 | 0.01 |
ORF1ab/nsp3 | 1144 | D1144D | gaC | gaT | 1 | 1 | B.1.1.121 | 0.002427 |
ORF1ab/nsp3 | 1144 | D1144D | gaC | gaT | 1 | 1 | B.1.1.222 | 0.000204 |
ORF1ab/nsp3 | 1144 | D1144D | gaC | gaT | 1 | 1 | B.1.1.225 | 0.007194 |
ORF1ab/nsp3 | 1144 | D1144D | gaC | gaT | 1 | 1 | B.1.1.241 | 0.00207 |
ORF1ab/nsp3 | 1144 | D1144E | gaC | gaA | 1 | 1 | B.1.1.28 | 0.000311 |
ORF1ab/nsp3 | 1144 | D1144D | gaC | gaT | 1 | 1 | B.1.1.306 | 0.000438 |
ORF1ab/nsp3 | 1144 | D1144D | gaC | gaT | 1 | 1 | B.1.1.318 | 0.000302 |
ORF1ab/nsp3 | 1144 | D1144del | GAC | --- | 1 | 1 | B.1.1.348 | 0.000796 |
ORF1ab/nsp3 | 1144 | D1144D | gaC | gaT | 1 | 1 | B.1.1.39 | 0.00051 |
ORF1ab/nsp3 | 1144 | D1144del | GAC | --- | 1 | 1 | B.1.1.409 | 0.002833 |
ORF1ab/nsp3 | 1144 | D1144N | Gac | Aac | 1 | 1 | B.1.1.44 | 0.00241 |
ORF1ab/nsp3 | 1144 | D1144N | Gac | Aac | 1 | 1 | B.1.1.519 | 0.00004 |
ORF1ab/nsp3 | 1144 | D1144D | gaC | gaT | 1 | 1 | B.1.1.526 | 0.003546 |
ORF1ab/nsp3 | 1144 | D1144N | Gac | Aac | 1 | 1 | B.1.1.528 | 0.004808 |
ORF1ab/nsp3 | 1144 | D1144R | GAC | CGT | 1 | 1 | B.1.1.7 | 0.000001 |
ORF1ab/nsp3 | 1144 | D1144A | gAc | gCc | 1 | 1 | B.1.1.7 | 0.000001 |
ORF1ab/nsp3 | 1144 | D1144Q | GaC | CaG | 1 | 1 | B.1.1.7 | 0.000001 |
ORF1ab/nsp3 | 1144 | D1144del | GAC | --- | 1 | 1 | B.1.160 | 0.000031 |
ORF1ab/nsp3 | 1144 | D1144H | Gac | Cac | 1 | 1 | B.1.160.15 | 0.00495 |
ORF1ab/nsp3 | 1144 | D1144E | gaC | gaG | 1 | 1 | B.1.177 | 0.000013 |
ORF1ab/nsp3 | 1144 | D1144R | GAC | CGT | 1 | 1 | B.1.177 | 0.000013 |
ORF1ab/nsp3 | 1144 | D1144D | gaC | gaT | 1 | 1 | B.1.177.15 | 0.000631 |
ORF1ab/nsp3 | 1144 | D1144N | GaC | AaT | 1 | 1 | B.1.177.15 | 0.000631 |
ORF1ab/nsp3 | 1144 | D1144del | GAC | --- | 1 | 1 | B.1.177.16 | 0.000664 |
ORF1ab/nsp3 | 1144 | D1144del | GAC | --- | 1 | 1 | B.1.177.19 | 0.001431 |
ORF1ab/nsp3 | 1144 | D1144D | gaC | gaT | 1 | 1 | B.1.177.4 | 0.000211 |
ORF1ab/nsp3 | 1144 | D1144del | GAC | --- | 1 | 1 | B.1.177.51 | 0.004566 |
ORF1ab/nsp3 | 1144 | D1144N | Gac | Aac | 1 | 1 | B.1.177.7 | 0.000165 |
ORF1ab/nsp3 | 1144 | D1144D | gaC | gaT | 1 | 1 | B.1.177.75 | 0.001041 |
ORF1ab/nsp3 | 1144 | D1144D | gaC | gaT | 1 | 1 | B.1.177.8 | 0.000752 |
ORF1ab/nsp3 | 1144 | D1144Y | Gac | Tac | 1 | 1 | B.1.2 | 0.000009 |
ORF1ab/nsp3 | 1144 | D1144A | gAc | gCc | 1 | 1 | B.1.2 | 0.000009 |
ORF1ab/nsp3 | 1144 | D1144D | gaC | gaT | 1 | 1 | B.1.232 | 0.000537 |
ORF1ab/nsp3 | 1144 | D1144V | gAc | gTc | 1 | 1 | B.1.239 | 0.001221 |
ORF1ab/nsp3 | 1144 | D1144F | GAc | TTc | 1 | 1 | B.1.239 | 0.001221 |
ORF1ab/nsp3 | 1144 | D1144Y | Gac | Tac | 1 | 1 | B.1.239 | 0.001221 |
ORF1ab/nsp3 | 1144 | D1144Y | Gac | Tac | 1 | 1 | B.1.243 | 0.00007 |
ORF1ab/nsp3 | 1144 | D1144N | Gac | Aac | 1 | 1 | B.1.243 | 0.00007 |
ORF1ab/nsp3 | 1144 | D1144V | gAc | gTc | 1 | 1 | B.1.243 | 0.00007 |
ORF1ab/nsp3 | 1144 | D1144F | GAc | TTc | 1 | 1 | B.1.258 | 0.000067 |
ORF1ab/nsp3 | 1144 | D1144del | GAC | --- | 1 | 1 | B.1.258 | 0.000067 |
ORF1ab/nsp3 | 1144 | D1144V | gAC | gTT | 1 | 1 | B.1.333 | 0.010526 |
ORF1ab/nsp3 | 1144 | D1144F | GAc | TTc | 1 | 1 | B.1.351 | 0.00003 |
ORF1ab/nsp3 | 1144 | D1144Y | Gac | Tac | 1 | 1 | B.1.351 | 0.00003 |
ORF1ab/nsp3 | 1144 | D1144V | gAc | gTc | 1 | 1 | B.1.351 | 0.00003 |
ORF1ab/nsp3 | 1144 | D1144Y | Gac | Tac | 1 | 1 | B.1.351.2 | 0.000303 |
ORF1ab/nsp3 | 1144 | D1144Y | Gac | Tac | 1 | 1 | B.1.36 | 0.000146 |
ORF1ab/nsp3 | 1144 | D1144A | gAc | gCc | 1 | 1 | B.1.36.17 | 0.000494 |
ORF1ab/nsp3 | 1144 | D1144del | GAC | --- | 1 | 1 | B.1.36.18 | 0.00042 |
ORF1ab/nsp3 | 1144 | D1144D | gaC | gaT | 1 | 1 | B.1.400 | 0.000429 |
ORF1ab/nsp3 | 1144 | D1144del | GAC | --- | 1 | 1 | B.1.416.1 | 0.001563 |
ORF1ab/nsp3 | 1144 | D1144D | gaC | gaT | 1 | 1 | B.1.429 | 0.000024 |
ORF1ab/nsp3 | 1144 | D1144D | gaC | gaT | 1 | 1 | B.1.436 | 0.001029 |
ORF1ab/nsp3 | 1144 | D1144E | gaC | gaA | 1 | 1 | B.1.438.1 | 0.000107 |
ORF1ab/nsp3 | 1144 | D1144D | gaC | gaT | 1 | 1 | B.1.497 | 0.000315 |
ORF1ab/nsp3 | 1144 | D1144H | Gac | Cac | 1 | 1 | B.1.525 | 0.000113 |
ORF1ab/nsp3 | 1144 | D1144del | GAC | --- | 1 | 1 | B.1.526 | 0.000024 |
ORF1ab/nsp3 | 1144 | D1144D | gaC | gaT | 1 | 1 | B.1.538 | 0.008065 |
ORF1ab/nsp3 | 1144 | D1144Y | Gac | Tac | 1 | 1 | B.1.564 | 0.000426 |
ORF1ab/nsp3 | 1144 | D1144D | gaC | gaT | 1 | 1 | B.1.609 | 0.000479 |
ORF1ab/nsp3 | 1144 | D1144D | gaC | gaT | 1 | 1 | B.1.617.1 | 0.000129 |
ORF1ab/nsp3 | 1144 | D1144del | GAC | --- | 1 | 1 | B.1.617.1 | 0.000129 |
ORF1ab/nsp3 | 1144 | D1144N | Gac | Aac | 1 | 1 | B.1.617.1 | 0.000129 |
ORF1ab/nsp3 | 1144 | D1144A | gAc | gCc | 1 | 1 | B.1.617.2 | 0.000004 |
ORF1ab/nsp3 | 1144 | D1144F | GAc | TTc | 1 | 1 | B.1.617.2 | 0.000004 |
ORF1ab/nsp3 | 1144 | D1144D | gaC | gaT | 1 | 1 | B.1.621 | 0.000089 |
ORF1ab/nsp3 | 1144 | D1144E | gaC | gaA | 1 | 1 | B.1.637 | 0.000073 |
ORF1ab/nsp3 | 1144 | D1144del | GAC | --- | 1 | 1 | B.15 | 0.017544 |
ORF1ab/nsp3 | 1144 | D1144Y | Gac | Tac | 1 | 1 | B.40 | 0.000364 |
ORF1ab/nsp3 | 1144 | D1144D | gaC | gaT | 1 | 1 | B.61 | 0.005747 |
ORF1ab/nsp3 | 1144 | D1144D | gaC | gaT | 1 | 1 | D.2 | 0.000075 |
ORF1ab/nsp3 | 1144 | D1144H | Gac | Cac | 1 | 1 | D.3 | 0.005917 |
ORF1ab/nsp3 | 1144 | D1144del | GAC | --- | 1 | 1 | P.1 | 0.000016 |
ORF1ab/nsp3 | 1144 | D1144A | gAc | gCc | 1 | 1 | P.1 | 0.000016 |
ORF1ab/nsp3 | 1144 | D1144Y | GaC | TaT | 1 | 1 | P.1 | 0.000016 |
ORF1ab/nsp3 | 1144 | D1144D | gaC | gaT | 1 | 1 | P.1.12 | 0.000484 |
ORF1ab/nsp3 | 1144 | D1144D | gaC | gaT | 1 | 1 | P.1.14 | 0.000048 |
ORF1ab/nsp3 | 1144 | D1144D | gaC | gaT | 1 | 1 | P.2 | 0.000187 |
ORF1ab/nsp3 | 1144 | D1144D | gaC | gaT | 1 | 1 | Q.1 | 0.000126 |
ORF1ab/nsp3 | 1144 | D1144E | gaC | gaG | 1 | 1 | Q.3 | 0.000145 |
ORF1ab/nsp3 | 1144 | D1144Y | Gac | Tac | 1 | 1 | R.1 | 0.00009 |
ORF1ab/nsp3 | 1144 | D1144H | Gac | Cac | 1 | 1 | R.1 | 0.00009 |
ORF1ab/nsp3 | 1144 | D1144F | GAc | TTc | 1 | 1 | R.1 | 0.00009 |
ORF1ab/nsp3 | 1144 | D1144V | gAc | gTc | 1 | 1 | R.1 | 0.00009 |
ORF1ab/nsp3 | 1144 | D1144D | gaC | gaT | 1 | 1 | R.1 | 0.00009 |
ORF1ab/nsp3 | 1144 | D1144D | gaC | gaT | 1 | 1 | W.4 | 0.001351 |
CoV-GLUE is still in development. CoV-GLUE was originally developed as part of COG-UK by Josh Singer using the GLUE framework at the MRC-University of Glasgow Centre for Virus Research (CVR). In 2021 it was redeveloped by Richard Orton to scale to the millions of genome sequences available. We acknowledge support from the MRC (MC_UU_12014/12), WT (220977/Z/20/Z) and UKRI G2P (MR/W005611/1). Please contact Richard Orton with any queries: Richard.Orton@glasgow.ac.uk
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