CoV-GLUE | Mutations | Mutation

CoV-GLUE Mutation: ORF = ORF1ab/nsp3 : CodonNum = 1144

Details of the codons used for the mutation across all lineages (CodonProp is the proportion each codon is used for this AA mutation):

ORFCodonNumMutORF1abMutMutTypeRefCodonMutCodonAACountCodonCountCodonPropGenome Position
ORF1ab/nsp31144D1144DD1962DsyngaCgaT1083108316149-6151
ORF1ab/nsp31144D1144ND1962NnonsynGacAac1211200.9917366149-6151
ORF1ab/nsp31144D1144ND1962NnonsynGaCAaT12110.008264466149-6151
ORF1ab/nsp31144D1144ED1962EnonsyngaCgaA98950.9693886149-6151
ORF1ab/nsp31144D1144ED1962EnonsyngaCgaG9830.03061226149-6151
ORF1ab/nsp31144D1144YD1962YnonsynGacTac60590.9833336149-6151
ORF1ab/nsp31144D1144YD1962YnonsynGaCTaT6010.01666676149-6151
ORF1ab/nsp31144D1144AD1962AnonsyngAcgCc464616149-6151
ORF1ab/nsp31144D1144delD1962deldelGAC---444416149-6151
ORF1ab/nsp31144D1144VD1962VnonsyngAcgTc25240.966149-6151
ORF1ab/nsp31144D1144VD1962VnonsyngACgTT2510.046149-6151
ORF1ab/nsp31144D1144GD1962GnonsyngAcgGc2180.3809526149-6151
ORF1ab/nsp31144D1144GD1962GnonsyngACgGT2170.3333336149-6151
ORF1ab/nsp31144D1144GD1962GnonsyngACgGG2160.2857146149-6151
ORF1ab/nsp31144D1144FD1962FnonsynGAcTTc181816149-6151
ORF1ab/nsp31144D1144HD1962HnonsynGacCac4416149-6151
ORF1ab/nsp31144D1144QD1962QnonsynGaCCaG3316149-6151
ORF1ab/nsp31144D1144SD1962SnonsynGAcAGc320.6666676149-6151
ORF1ab/nsp31144D1144SD1962SnonsynGACAGT310.3333336149-6151
ORF1ab/nsp31144D1144RD1962RnonsynGACCGT2216149-6151
ORF1ab/nsp31144D1144ID1962InonsynGACATT1116149-6151

Details of the mutation no within lineages (LineageCodonProp is the proportion the codon is observed at, at this particular site, on each lineage):

ORFCodonNumMutRefCodonMutCodonCodonCountAACountLineageLineageCodonProp
ORF1ab/nsp31144D1144DgaCgaT10831083All0.000207
ORF1ab/nsp31144D1144DgaCgaT248248B.1.1.70.000222
ORF1ab/nsp31144D1144DgaCgaT129129B.1.20.001136
ORF1ab/nsp31144D1144NGacAac120121All0.000023
ORF1ab/nsp31144D1144NGaCAaT1121All0
ORF1ab/nsp31144D1144DgaCgaT119119AY.260.003369
ORF1ab/nsp31144D1144EgaCgaA9598All0.000018
ORF1ab/nsp31144D1144EgaCgaG398All0.000001
ORF1ab/nsp31144D1144DgaCgaT7070AY.40.000109
ORF1ab/nsp31144D1144DgaCgaT6868AY.150.151111
ORF1ab/nsp31144D1144YGacTac5960All0.000011
ORF1ab/nsp31144D1144YGaCTaT160All0
ORF1ab/nsp31144D1144DgaCgaT5757P.10.000898
ORF1ab/nsp31144D1144AgAcgCc4646All0.000009
ORF1ab/nsp31144D1144delGAC---4444All0.000008
ORF1ab/nsp31144D1144DgaCgaT4141AY.250.000247
ORF1ab/nsp31144D1144DgaCgaT3535AY.440.000213
ORF1ab/nsp31144D1144EgaCgaA2626B.1.1.4500.896552
ORF1ab/nsp31144D1144VgAcgTc2425All0.000005
ORF1ab/nsp31144D1144VgACgTT125All0
ORF1ab/nsp31144D1144AgAcgCc2323B.1.1770.000303
ORF1ab/nsp31144D1144NGacAac2323B.1.3690.00656
ORF1ab/nsp31144D1144GgAcgGc821All0.000002
ORF1ab/nsp31144D1144GgACgGT721All0.000001
ORF1ab/nsp31144D1144GgACgGG621All0.000001
ORF1ab/nsp31144D1144DgaCgaT1919B.1.6270.038384
ORF1ab/nsp31144D1144FGAcTTc1818All0.000003
ORF1ab/nsp31144D1144DgaCgaT1818B.1.617.20.000068
ORF1ab/nsp31144D1144DgaCgaT1616B.1.1.3890.09697
ORF1ab/nsp31144D1144NGacAac1515B.1.617.20.000056
ORF1ab/nsp31144D1144NGacAac1313AY.30.000129
ORF1ab/nsp31144D1144DgaCgaT1313AY.430.000058
ORF1ab/nsp31144D1144YGacTac1313AY.610.001362
ORF1ab/nsp31144D1144NGacAac1212AY.40.000019
ORF1ab/nsp31144D1144DgaCgaT1212AY.9.10.001005
ORF1ab/nsp31144D1144NGacAac1111AY.1020.000292
ORF1ab/nsp31144D1144DgaCgaT1111AY.1180.000689
ORF1ab/nsp31144D1144DgaCgaT1111AY.290.000174
ORF1ab/nsp31144D1144delGAC---1111B.1.1.70.00001
ORF1ab/nsp31144D1144EgaCgaA1010AY.40.000016
ORF1ab/nsp31144D1144DgaCgaT1010AY.90.000676
ORF1ab/nsp31144D1144FGAcTTc99B.1.1.70.000008
ORF1ab/nsp31144D1144DgaCgaT99B.1.1770.000119
ORF1ab/nsp31144D1144DgaCgaT99B.1.466.20.003521
ORF1ab/nsp31144D1144DgaCgaT99B.400.003279
ORF1ab/nsp31144D1144DgaCgaT88AJ.10.363636
ORF1ab/nsp31144D1144AgAcgCc88AY.40.000012
ORF1ab/nsp31144D1144DgaCgaT88B.10.000073
ORF1ab/nsp31144D1144EgaCgaA88B.1.1.100.008919
ORF1ab/nsp31144D1144DgaCgaT88B.1.1.5190.000318
ORF1ab/nsp31144D1144VgAcgTc88B.1.1.70.000007
ORF1ab/nsp31144D1144EgaCgaA88B.1.20.00007
ORF1ab/nsp31144D1144DgaCgaT88B.1.5250.000905
ORF1ab/nsp31144D1144EgaCgaA88B.1.617.20.00003
ORF1ab/nsp31144D1144DgaCgaT88C.370.000929
ORF1ab/nsp31144D1144DgaCgaT77AY.1020.000186
ORF1ab/nsp31144D1144DgaCgaT77AY.1200.00026
ORF1ab/nsp31144D1144NGacAac77AY.120.10.002247
ORF1ab/nsp31144D1144NGacAac66AY.390.000148
ORF1ab/nsp31144D1144NGacAac66AY.440.000037
ORF1ab/nsp31144D1144YGacTac66B.1.1.70.000005
ORF1ab/nsp31144D1144DgaCgaT66B.1.2210.000426
ORF1ab/nsp31144D1144YGacTac66B.1.617.20.000023
ORF1ab/nsp31144D1144VgAcgTc55AY.250.00003
ORF1ab/nsp31144D1144YGacTac55AY.440.00003
ORF1ab/nsp31144D1144DgaCgaT55AY.50.000103
ORF1ab/nsp31144D1144DgaCgaT55B.1.2650.006353
ORF1ab/nsp31144D1144DgaCgaT55B.1.5950.001305
ORF1ab/nsp31144D1144GgACgGT440.222222
ORF1ab/nsp31144D1144HGacCac44All0.000001
ORF1ab/nsp31144D1144NGacAac44AY.250.000024
ORF1ab/nsp31144D1144DgaCgaT44AY.740.000463
ORF1ab/nsp31144D1144DgaCgaT44B.1.1.2170.014545
ORF1ab/nsp31144D1144GgACgGT34B.1.1.70.000003
ORF1ab/nsp31144D1144EgaCgaA34B.1.1.70.000003
ORF1ab/nsp31144D1144GgAcgGc14B.1.1.70.000001
ORF1ab/nsp31144D1144EgaCgaG14B.1.1.70.000001
ORF1ab/nsp31144D1144NGacAac44B.1.110.30.002874
ORF1ab/nsp31144D1144DgaCgaT44P.1.70.001277
ORF1ab/nsp31144D1144QGaCCaG33All0.000001
ORF1ab/nsp31144D1144SGAcAGc23All0
ORF1ab/nsp31144D1144SGACAGT13All0
ORF1ab/nsp31144D1144AgAcgCc33AY.1030.000019
ORF1ab/nsp31144D1144delGAC---33AY.250.000018
ORF1ab/nsp31144D1144DgaCgaT33AY.390.000074
ORF1ab/nsp31144D1144DgaCgaT33AY.39.20.004622
ORF1ab/nsp31144D1144EgaCgaA33AY.430.000013
ORF1ab/nsp31144D1144EgaCgaA33AY.440.000018
ORF1ab/nsp31144D1144YGacTac33AY.470.000093
ORF1ab/nsp31144D1144DgaCgaT33AY.610.000314
ORF1ab/nsp31144D1144YGacTac33B.10.000027
ORF1ab/nsp31144D1144EgaCgaA33B.1.10.000054
ORF1ab/nsp31144D1144NGacAac33B.1.1.70.000003
ORF1ab/nsp31144D1144AgAcgCc33B.1.2430.000209
ORF1ab/nsp31144D1144VgAcgTc33B.1.5260.000071
ORF1ab/nsp31144D1144DgaCgaT33B.1.5750.00091
ORF1ab/nsp31144D1144EgaCgaA33B.1.5880.00273
ORF1ab/nsp31144D1144GgACgGG23B.1.617.20.000008
ORF1ab/nsp31144D1144GgAcgGc13B.1.617.20.000004
ORF1ab/nsp31144D1144NGacAac33P.10.000047
ORF1ab/nsp31144D1144SGAcAGc220.111111
ORF1ab/nsp31144D1144QGaCCaG220.111111
ORF1ab/nsp31144D1144RGACCGT22All0
ORF1ab/nsp31144D1144DgaCgaT22AY.1030.000012
ORF1ab/nsp31144D1144DgaCgaT22AY.140.000176
ORF1ab/nsp31144D1144EgaCgaA22AY.200.000078
ORF1ab/nsp31144D1144DgaCgaT22AY.30.00002
ORF1ab/nsp31144D1144DgaCgaT22AY.380.000999
ORF1ab/nsp31144D1144delGAC---22AY.40.000003
ORF1ab/nsp31144D1144DgaCgaT22AY.420.00008
ORF1ab/nsp31144D1144NGacAac22AY.60.000082
ORF1ab/nsp31144D1144DgaCgaT22AY.690.000373
ORF1ab/nsp31144D1144EgaCgaA22AY.750.000112
ORF1ab/nsp31144D1144DgaCgaT22B0.000256
ORF1ab/nsp31144D1144EgaCgaA22B.10.000018
ORF1ab/nsp31144D1144DgaCgaT22B.1.1.3530.041667
ORF1ab/nsp31144D1144DgaCgaT22B.1.1600.000062
ORF1ab/nsp31144D1144YGacTac22B.1.1770.000026
ORF1ab/nsp31144D1144NGacAac22B.1.20.000018
ORF1ab/nsp31144D1144DgaCgaT22B.1.258.220.005333
ORF1ab/nsp31144D1144DgaCgaT22B.1.3510.000059
ORF1ab/nsp31144D1144DgaCgaT22B.1.3950.014085
ORF1ab/nsp31144D1144DgaCgaT22B.1.3960.001411
ORF1ab/nsp31144D1144EgaCgaA22B.1.4290.000047
ORF1ab/nsp31144D1144YGacTac22B.1.5960.000174
ORF1ab/nsp31144D1144AgAcgCc22B.1.6230.001073
ORF1ab/nsp31144D1144DgaCgaT22B.120.012821
ORF1ab/nsp31144D1144delGAC---22C.370.000232
ORF1ab/nsp31144D1144VgAcgTc22P.10.000032
ORF1ab/nsp31144D1144FGAcTTc22P.10.000032
ORF1ab/nsp31144D1144DgaCgaT22Q.80.00033
ORF1ab/nsp31144D1144YGacTac11A0.000387
ORF1ab/nsp31144D1144DgaCgaT11A.20.000662
ORF1ab/nsp31144D1144DgaCgaT11A.250.018182
ORF1ab/nsp31144D1144delGAC---11A.280.002646
ORF1ab/nsp31144D1144IGACATT11All0
ORF1ab/nsp31144D1144YGacTac11AP.10.001502
ORF1ab/nsp31144D1144DgaCgaT11AY.1000.000046
ORF1ab/nsp31144D1144EgaCgaA11AY.1020.000027
ORF1ab/nsp31144D1144DgaCgaT11AY.1110.000183
ORF1ab/nsp31144D1144GgACgGG11AY.1130.000142
ORF1ab/nsp31144D1144DgaCgaT11AY.1130.000142
ORF1ab/nsp31144D1144FGAcTTc11AY.1130.000142
ORF1ab/nsp31144D1144DgaCgaT11AY.1170.000085
ORF1ab/nsp31144D1144YGacTac11AY.1170.000085
ORF1ab/nsp31144D1144DgaCgaT11AY.1190.000035
ORF1ab/nsp31144D1144delGAC---11AY.1200.000037
ORF1ab/nsp31144D1144NGacAac11AY.1200.000037
ORF1ab/nsp31144D1144DgaCgaT11AY.120.2.10.000498
ORF1ab/nsp31144D1144DgaCgaT11AY.1210.000135
ORF1ab/nsp31144D1144YGacTac11AY.16.10.00047
ORF1ab/nsp31144D1144DgaCgaT11AY.16.10.00047
ORF1ab/nsp31144D1144DgaCgaT11AY.190.00114
ORF1ab/nsp31144D1144DgaCgaT11AY.200.000039
ORF1ab/nsp31144D1144GgAcgGc11AY.230.00007
ORF1ab/nsp31144D1144NGacAac11AY.230.00007
ORF1ab/nsp31144D1144YGacTac11AY.250.000006
ORF1ab/nsp31144D1144GgAcgGc11AY.250.000006
ORF1ab/nsp31144D1144GgACgGG11AY.30.00001
ORF1ab/nsp31144D1144delGAC---11AY.30.00001
ORF1ab/nsp31144D1144AgAcgCc11AY.3.10.000085
ORF1ab/nsp31144D1144DgaCgaT11AY.300.000396
ORF1ab/nsp31144D1144delGAC---11AY.330.000067
ORF1ab/nsp31144D1144EgaCgaA11AY.390.000025
ORF1ab/nsp31144D1144YGacTac11AY.390.000025
ORF1ab/nsp31144D1144YGacTac11AY.40.000002
ORF1ab/nsp31144D1144DgaCgaT11AY.400.000964
ORF1ab/nsp31144D1144GgAcgGc11AY.430.000004
ORF1ab/nsp31144D1144YGacTac11AY.430.000004
ORF1ab/nsp31144D1144delGAC---11AY.430.000004
ORF1ab/nsp31144D1144AgAcgCc11AY.440.000006
ORF1ab/nsp31144D1144GgACgGG11AY.440.000006
ORF1ab/nsp31144D1144FGAcTTc11AY.440.000006
ORF1ab/nsp31144D1144VgAcgTc11AY.440.000006
ORF1ab/nsp31144D1144GgACgGG11AY.46.60.000072
ORF1ab/nsp31144D1144EgaCgaA11AY.46.60.000072
ORF1ab/nsp31144D1144VgAcgTc11AY.470.000031
ORF1ab/nsp31144D1144DgaCgaT11AY.470.000031
ORF1ab/nsp31144D1144EgaCgaA11AY.50.000021
ORF1ab/nsp31144D1144delGAC---11AY.540.000095
ORF1ab/nsp31144D1144YGacTac11AY.540.000095
ORF1ab/nsp31144D1144DgaCgaT11AY.590.00053
ORF1ab/nsp31144D1144DgaCgaT11AY.60.000041
ORF1ab/nsp31144D1144delGAC---11AY.610.000105
ORF1ab/nsp31144D1144delGAC---11AY.660.00107
ORF1ab/nsp31144D1144IGACATT11AY.670.000464
ORF1ab/nsp31144D1144delGAC---11AY.670.000464
ORF1ab/nsp31144D1144EgaCgaA11AY.670.000464
ORF1ab/nsp31144D1144EgaCgaA11AY.690.000187
ORF1ab/nsp31144D1144EgaCgaA11AY.740.000116
ORF1ab/nsp31144D1144NGacAac11AY.840.000437
ORF1ab/nsp31144D1144delGAC---11AY.840.000437
ORF1ab/nsp31144D1144delGAC---11AY.850.000427
ORF1ab/nsp31144D1144EgaCgaA11AY.90.000068
ORF1ab/nsp31144D1144DgaCgaT11AY.9.20.000037
ORF1ab/nsp31144D1144GgAcgGc11AY.9.20.000037
ORF1ab/nsp31144D1144YGacTac11AY.9.20.000037
ORF1ab/nsp31144D1144DgaCgaT11AY.980.000079
ORF1ab/nsp31144D1144delGAC---11AY.98.10.000048
ORF1ab/nsp31144D1144DgaCgaT11AY.98.10.000048
ORF1ab/nsp31144D1144GgAcgGc11AY.990.001049
ORF1ab/nsp31144D1144GgAcgGc11B.10.000009
ORF1ab/nsp31144D1144delGAC---11B.1.10.000018
ORF1ab/nsp31144D1144DgaCgaT11B.1.10.000018
ORF1ab/nsp31144D1144SGACAGT11B.1.10.000018
ORF1ab/nsp31144D1144EgaCgaA11B.1.1.1010.01
ORF1ab/nsp31144D1144DgaCgaT11B.1.1.1210.002427
ORF1ab/nsp31144D1144DgaCgaT11B.1.1.2220.000204
ORF1ab/nsp31144D1144DgaCgaT11B.1.1.2250.007194
ORF1ab/nsp31144D1144DgaCgaT11B.1.1.2410.00207
ORF1ab/nsp31144D1144EgaCgaA11B.1.1.280.000311
ORF1ab/nsp31144D1144DgaCgaT11B.1.1.3060.000438
ORF1ab/nsp31144D1144DgaCgaT11B.1.1.3180.000302
ORF1ab/nsp31144D1144delGAC---11B.1.1.3480.000796
ORF1ab/nsp31144D1144DgaCgaT11B.1.1.390.00051
ORF1ab/nsp31144D1144delGAC---11B.1.1.4090.002833
ORF1ab/nsp31144D1144NGacAac11B.1.1.440.00241
ORF1ab/nsp31144D1144NGacAac11B.1.1.5190.00004
ORF1ab/nsp31144D1144DgaCgaT11B.1.1.5260.003546
ORF1ab/nsp31144D1144NGacAac11B.1.1.5280.004808
ORF1ab/nsp31144D1144RGACCGT11B.1.1.70.000001
ORF1ab/nsp31144D1144AgAcgCc11B.1.1.70.000001
ORF1ab/nsp31144D1144QGaCCaG11B.1.1.70.000001
ORF1ab/nsp31144D1144delGAC---11B.1.1600.000031
ORF1ab/nsp31144D1144HGacCac11B.1.160.150.00495
ORF1ab/nsp31144D1144EgaCgaG11B.1.1770.000013
ORF1ab/nsp31144D1144RGACCGT11B.1.1770.000013
ORF1ab/nsp31144D1144DgaCgaT11B.1.177.150.000631
ORF1ab/nsp31144D1144NGaCAaT11B.1.177.150.000631
ORF1ab/nsp31144D1144delGAC---11B.1.177.160.000664
ORF1ab/nsp31144D1144delGAC---11B.1.177.190.001431
ORF1ab/nsp31144D1144DgaCgaT11B.1.177.40.000211
ORF1ab/nsp31144D1144delGAC---11B.1.177.510.004566
ORF1ab/nsp31144D1144NGacAac11B.1.177.70.000165
ORF1ab/nsp31144D1144DgaCgaT11B.1.177.750.001041
ORF1ab/nsp31144D1144DgaCgaT11B.1.177.80.000752
ORF1ab/nsp31144D1144YGacTac11B.1.20.000009
ORF1ab/nsp31144D1144AgAcgCc11B.1.20.000009
ORF1ab/nsp31144D1144DgaCgaT11B.1.2320.000537
ORF1ab/nsp31144D1144VgAcgTc11B.1.2390.001221
ORF1ab/nsp31144D1144FGAcTTc11B.1.2390.001221
ORF1ab/nsp31144D1144YGacTac11B.1.2390.001221
ORF1ab/nsp31144D1144YGacTac11B.1.2430.00007
ORF1ab/nsp31144D1144NGacAac11B.1.2430.00007
ORF1ab/nsp31144D1144VgAcgTc11B.1.2430.00007
ORF1ab/nsp31144D1144FGAcTTc11B.1.2580.000067
ORF1ab/nsp31144D1144delGAC---11B.1.2580.000067
ORF1ab/nsp31144D1144VgACgTT11B.1.3330.010526
ORF1ab/nsp31144D1144FGAcTTc11B.1.3510.00003
ORF1ab/nsp31144D1144YGacTac11B.1.3510.00003
ORF1ab/nsp31144D1144VgAcgTc11B.1.3510.00003
ORF1ab/nsp31144D1144YGacTac11B.1.351.20.000303
ORF1ab/nsp31144D1144YGacTac11B.1.360.000146
ORF1ab/nsp31144D1144AgAcgCc11B.1.36.170.000494
ORF1ab/nsp31144D1144delGAC---11B.1.36.180.00042
ORF1ab/nsp31144D1144DgaCgaT11B.1.4000.000429
ORF1ab/nsp31144D1144delGAC---11B.1.416.10.001563
ORF1ab/nsp31144D1144DgaCgaT11B.1.4290.000024
ORF1ab/nsp31144D1144DgaCgaT11B.1.4360.001029
ORF1ab/nsp31144D1144EgaCgaA11B.1.438.10.000107
ORF1ab/nsp31144D1144DgaCgaT11B.1.4970.000315
ORF1ab/nsp31144D1144HGacCac11B.1.5250.000113
ORF1ab/nsp31144D1144delGAC---11B.1.5260.000024
ORF1ab/nsp31144D1144DgaCgaT11B.1.5380.008065
ORF1ab/nsp31144D1144YGacTac11B.1.5640.000426
ORF1ab/nsp31144D1144DgaCgaT11B.1.6090.000479
ORF1ab/nsp31144D1144DgaCgaT11B.1.617.10.000129
ORF1ab/nsp31144D1144delGAC---11B.1.617.10.000129
ORF1ab/nsp31144D1144NGacAac11B.1.617.10.000129
ORF1ab/nsp31144D1144AgAcgCc11B.1.617.20.000004
ORF1ab/nsp31144D1144FGAcTTc11B.1.617.20.000004
ORF1ab/nsp31144D1144DgaCgaT11B.1.6210.000089
ORF1ab/nsp31144D1144EgaCgaA11B.1.6370.000073
ORF1ab/nsp31144D1144delGAC---11B.150.017544
ORF1ab/nsp31144D1144YGacTac11B.400.000364
ORF1ab/nsp31144D1144DgaCgaT11B.610.005747
ORF1ab/nsp31144D1144DgaCgaT11D.20.000075
ORF1ab/nsp31144D1144HGacCac11D.30.005917
ORF1ab/nsp31144D1144delGAC---11P.10.000016
ORF1ab/nsp31144D1144AgAcgCc11P.10.000016
ORF1ab/nsp31144D1144YGaCTaT11P.10.000016
ORF1ab/nsp31144D1144DgaCgaT11P.1.120.000484
ORF1ab/nsp31144D1144DgaCgaT11P.1.140.000048
ORF1ab/nsp31144D1144DgaCgaT11P.20.000187
ORF1ab/nsp31144D1144DgaCgaT11Q.10.000126
ORF1ab/nsp31144D1144EgaCgaG11Q.30.000145
ORF1ab/nsp31144D1144YGacTac11R.10.00009
ORF1ab/nsp31144D1144HGacCac11R.10.00009
ORF1ab/nsp31144D1144FGAcTTc11R.10.00009
ORF1ab/nsp31144D1144VgAcgTc11R.10.00009
ORF1ab/nsp31144D1144DgaCgaT11R.10.00009
ORF1ab/nsp31144D1144DgaCgaT11W.40.001351