CoV-GLUEGenomeCountriesLineagesMutationsInsertionsDeletionsUpdated:

CoV-GLUE | Mutations | Mutation

CoV-GLUE Mutation: ORF = ORF1ab/nsp3 : CodonNum = 1142

Details of the codons used for the mutation across all lineages (CodonProp is the proportion each codon is used for this AA mutation):

ORFCodonNumMutORF1abMutMutTypeRefCodonMutCodonAACountCodonCountCodonPropGenome Position
ORF1ab/nsp31142F1142FF1960FsynttCttT7041704116143-6145
ORF1ab/nsp31142F1142LF1960LnonsynttCttA4303890.9046516143-6145
ORF1ab/nsp31142F1142LF1960LnonsynTtcCtc430410.09534886143-6145
ORF1ab/nsp31142F1142del1F1960del1delttCtt-848416143-6145
ORF1ab/nsp31142F1142CF1960CnonsyntTctGc515116143-6145
ORF1ab/nsp31142F1142delF1960deldelTTC---464616143-6145
ORF1ab/nsp31142F1142YF1960YnonsyntTctAc404016143-6145
ORF1ab/nsp31142F1142SF1960SnonsyntTctCc28230.8214296143-6145
ORF1ab/nsp31142F1142SF1960SnonsyntTCtCT2850.1785716143-6145
ORF1ab/nsp31142F1142IF1960InonsynTtcAtc3316143-6145
ORF1ab/nsp31142F1142AF1960AnonsynTTCGCG310.3333336143-6145
ORF1ab/nsp31142F1142AF1960AnonsynTTCGCT310.3333336143-6145
ORF1ab/nsp31142F1142AF1960AnonsynTTcGCc310.3333336143-6145
ORF1ab/nsp31142F1142VF1960VnonsynTtcGtc2216143-6145
ORF1ab/nsp31142F1142GF1960GnonsynTTCGGA1116143-6145
ORF1ab/nsp31142F1142PF1960PnonsynTTcCCc1116143-6145

Details of the mutation no within lineages (LineageCodonProp is the proportion the codon is observed at, at this particular site, on each lineage):

ORFCodonNumMutRefCodonMutCodonCodonCountAACountLineageLineageCodonProp
ORF1ab/nsp31142F1142FttCttT70417041All0.001347
ORF1ab/nsp31142F1142FttCttT14881488AY.60.061199
ORF1ab/nsp31142F1142FttCttT12211221B.1.1.70.001093
ORF1ab/nsp31142F1142FttCttT890890B.1.1.1570.812785
ORF1ab/nsp31142F1142LttCttA389430All0.000074
ORF1ab/nsp31142F1142LTtcCtc41430All0.000008
ORF1ab/nsp31142F1142FttCttT401401AY.250.002412
ORF1ab/nsp31142F1142LttCttA274275B.1.1.70.000245
ORF1ab/nsp31142F1142LTtcCtc1275B.1.1.70.000001
ORF1ab/nsp31142F1142FttCttT228228B.1.617.20.000859
ORF1ab/nsp31142F1142FttCttT209209AY.40.000325
ORF1ab/nsp31142F1142FttCttT205205B.1.20.001805
ORF1ab/nsp31142F1142FttCttT185185B.1.177.400.953608
ORF1ab/nsp31142F1142FttCttT142142AY.1030.000882
ORF1ab/nsp31142F1142FttCttT139139AY.430.000616
ORF1ab/nsp31142F1142FttCttT122122B.1.5880.11101
ORF1ab/nsp31142F1142FttCttT117117B.10.001072
ORF1ab/nsp31142F1142FttCttT100100C.160.106045
ORF1ab/nsp31142F1142FttCttT9191AY.440.000554
ORF1ab/nsp31142F1142del1ttCtt-8484All0.000016
ORF1ab/nsp31142F1142FttCttT8383B.1.360.01211
ORF1ab/nsp31142F1142del1ttCtt-6969B.1.1.70.000062
ORF1ab/nsp31142F1142FttCttT6161AY.330.004073
ORF1ab/nsp31142F1142LttCttA6060AZ.20.049261
ORF1ab/nsp31142F1142FttCttT5757P.10.000898
ORF1ab/nsp31142F1142FttCttT5353AY.30.000527
ORF1ab/nsp31142F1142FttCttT5252B.1.1600.001622
ORF1ab/nsp31142F1142CtTctGc5151All0.00001
ORF1ab/nsp31142F1142delTTC---4646All0.000009
ORF1ab/nsp31142F1142FttCttT4444B.1.1770.000579
ORF1ab/nsp31142F1142YtTctAc4040All0.000008
ORF1ab/nsp31142F1142FttCttT4040AY.50.000826
ORF1ab/nsp31142F1142FttCttT3838AY.1210.005142
ORF1ab/nsp31142F1142FttCttT3838B.1.10.000689
ORF1ab/nsp31142F1142FttCttT3535AY.1080.038589
ORF1ab/nsp31142F1142FttCttT3535B.1.2240.875
ORF1ab/nsp31142F1142YtTctAc3434B.1.4270.001717
ORF1ab/nsp31142F1142FttCttT3333AY.1020.000875
ORF1ab/nsp31142F1142FttCttT3232AY.1200.00119
ORF1ab/nsp31142F1142FttCttT3232AY.260.000906
ORF1ab/nsp31142F1142FttCttT3030B.1.428.21
ORF1ab/nsp31142F1142FttCttT2929AY.290.000457
ORF1ab/nsp31142F1142StTctCc2328All0.000004
ORF1ab/nsp31142F1142StTCtCT528All0.000001
ORF1ab/nsp31142F1142FttCttT2828B.1.2580.001863
ORF1ab/nsp31142F1142FttCttT2727AY.99.20.002488
ORF1ab/nsp31142F1142FttCttT2727B.1.1.3200.490909
ORF1ab/nsp31142F1142FttCttT2626AY.100.013778
ORF1ab/nsp31142F1142FttCttT2222AY.200.000855
ORF1ab/nsp31142F1142FttCttT2020B.1.177.520.035149
ORF1ab/nsp31142F1142FttCttT2020B.1.4270.00101
ORF1ab/nsp31142F1142FttCttT2020B.1.4290.000471
ORF1ab/nsp31142F1142FttCttT1919AY.1000.000874
ORF1ab/nsp31142F1142FttCttT1919AY.46.60.001372
ORF1ab/nsp31142F1142FttCttT1818AY.230.001255
ORF1ab/nsp31142F1142FttCttT1818B.1.1.5190.000715
ORF1ab/nsp31142F1142FttCttT1818B.1.1280.011436
ORF1ab/nsp31142F1142FttCttT1818P.1.140.00086
ORF1ab/nsp31142F1142CtTctGc1717B.1.1.70.000015
ORF1ab/nsp31142F1142FttCttT1717B.1.5260.0004
ORF1ab/nsp31142F1142FttCttT1414AY.850.00598
ORF1ab/nsp31142F1142FttCttT1414B.1.3510.000416
ORF1ab/nsp31142F1142FttCttT1313B.1.3240.020867
ORF1ab/nsp31142F1142LttCttA1313B.1.617.20.000049
ORF1ab/nsp31142F1142FttCttT1212AY.390.000297
ORF1ab/nsp31142F1142CtTctGc1212B.1.617.20.000045
ORF1ab/nsp31142F1142FttCttT1111AY.120.003477
ORF1ab/nsp31142F1142delTTC---1111B.1.1.70.00001
ORF1ab/nsp31142F1142FttCttT1010AY.450.001217
ORF1ab/nsp31142F1142LTtcCtc1010AY.470.000311
ORF1ab/nsp31142F1142FttCttT1010D.20.00075
ORF1ab/nsp31142F1142FttCttT99AY.4.20.000195
ORF1ab/nsp31142F1142LTtcCtc59B.10.000046
ORF1ab/nsp31142F1142LttCttA49B.10.000037
ORF1ab/nsp31142F1142FttCttT99B.1.1.2140.000499
ORF1ab/nsp31142F1142LTtcCtc59P.10.000079
ORF1ab/nsp31142F1142LttCttA49P.10.000063
ORF1ab/nsp31142F1142FttCttT88A.2.50.003992
ORF1ab/nsp31142F1142FttCttT88AY.1180.000501
ORF1ab/nsp31142F1142FttCttT88AY.420.000322
ORF1ab/nsp31142F1142FttCttT88AY.46.40.001316
ORF1ab/nsp31142F1142FttCttT88AY.5.30.002699
ORF1ab/nsp31142F1142FttCttT77AY.1190.000247
ORF1ab/nsp31142F1142LttCttA77AY.30.00007
ORF1ab/nsp31142F1142FttCttT77AY.750.000392
ORF1ab/nsp31142F1142FttCttT77AY.9.10.000586
ORF1ab/nsp31142F1142CtTctGc77AY.980.000553
ORF1ab/nsp31142F1142FttCttT77B.1.177.570.001967
ORF1ab/nsp31142F1142FttCttT77P.1.150.001626
ORF1ab/nsp31142F1142FttCttT77Y.10.089744
ORF1ab/nsp31142F1142CtTctGc660.333333
ORF1ab/nsp31142F1142FttCttT66AY.460.000624
ORF1ab/nsp31142F1142FttCttT66AY.540.000572
ORF1ab/nsp31142F1142FttCttT66B.1.1.280.001867
ORF1ab/nsp31142F1142FttCttT55AY.1170.000423
ORF1ab/nsp31142F1142FttCttT55AY.270.000324
ORF1ab/nsp31142F1142FttCttT55AY.3.10.000426
ORF1ab/nsp31142F1142FttCttT55AY.370.00158
ORF1ab/nsp31142F1142FttCttT55AY.470.000156
ORF1ab/nsp31142F1142FttCttT55AY.98.10.000242
ORF1ab/nsp31142F1142FttCttT55B.1.1.3060.002192
ORF1ab/nsp31142F1142StTctCc55B.1.1.70.000004
ORF1ab/nsp31142F1142FttCttT55B.1.2430.000348
ORF1ab/nsp31142F1142FttCttT55B.1.617.10.000645
ORF1ab/nsp31142F1142FttCttT55P.1.70.001596
ORF1ab/nsp31142F1142FttCttT44AY.1060.00134
ORF1ab/nsp31142F1142FttCttT44AY.550.00367
ORF1ab/nsp31142F1142FttCttT44AY.670.001857
ORF1ab/nsp31142F1142FttCttT44B.1.1.10.001307
ORF1ab/nsp31142F1142FttCttT44B.1.177.860.000734
ORF1ab/nsp31142F1142FttCttT44B.1.2320.002149
ORF1ab/nsp31142F1142FttCttT44B.1.351.20.00121
ORF1ab/nsp31142F1142FttCttT44B.1.36.280.022989
ORF1ab/nsp31142F1142FttCttT44B.1.6210.000354
ORF1ab/nsp31142F1142FttCttT44C.310.071429
ORF1ab/nsp31142F1142LttCttA44C.36.30.002269
ORF1ab/nsp31142F1142FttCttT44N.90.02381
ORF1ab/nsp31142F1142FttCttT44P.1.170.000647
ORF1ab/nsp31142F1142LttCttA44Q.40.001819
ORF1ab/nsp31142F1142FttCttT44Q.80.00066
ORF1ab/nsp31142F1142ITtcAtc33All0.000001
ORF1ab/nsp31142F1142ATTCGCG13All0
ORF1ab/nsp31142F1142ATTcGCc13All0
ORF1ab/nsp31142F1142ATTCGCT13All0
ORF1ab/nsp31142F1142FttCttT33AY.1110.000549
ORF1ab/nsp31142F1142FttCttT33AY.160.001139
ORF1ab/nsp31142F1142delTTC---33AY.250.000018
ORF1ab/nsp31142F1142FttCttT33AY.320.001597
ORF1ab/nsp31142F1142LttCttA33AY.750.000168
ORF1ab/nsp31142F1142FttCttT33B0.000383
ORF1ab/nsp31142F1142FttCttT33B.1.1.330.001263
ORF1ab/nsp31142F1142FttCttT33B.1.177.370.081081
ORF1ab/nsp31142F1142del1ttCtt-33B.1.177.820.001432
ORF1ab/nsp31142F1142StTctCc33B.1.20.000026
ORF1ab/nsp31142F1142FttCttT33B.1.3110.000824
ORF1ab/nsp31142F1142del1ttCtt-33B.1.3510.000089
ORF1ab/nsp31142F1142LTtcCtc23B.1.3510.000059
ORF1ab/nsp31142F1142LttCttA13B.1.3510.00003
ORF1ab/nsp31142F1142FttCttT33B.1.3620.004622
ORF1ab/nsp31142F1142FttCttT33B.1.4700.004213
ORF1ab/nsp31142F1142FttCttT33B.1.5960.000261
ORF1ab/nsp31142F1142FttCttT33B.1.6280.001057
ORF1ab/nsp31142F1142FttCttT33B.1.6370.000219
ORF1ab/nsp31142F1142FttCttT33P.20.00056
ORF1ab/nsp31142F1142FttCttT33Q.30.000435
ORF1ab/nsp31142F1142VTtcGtc22All0
ORF1ab/nsp31142F1142FttCttT22AU.20.004843
ORF1ab/nsp31142F1142LttCttA12AY.1030.000006
ORF1ab/nsp31142F1142LTtcCtc12AY.1030.000006
ORF1ab/nsp31142F1142CtTctGc22AY.1050.001286
ORF1ab/nsp31142F1142FttCttT22AY.1050.001286
ORF1ab/nsp31142F1142StTctCc22AY.250.000012
ORF1ab/nsp31142F1142FttCttT22AY.29.10.000441
ORF1ab/nsp31142F1142delTTC---22AY.40.000003
ORF1ab/nsp31142F1142LTtcCtc12AY.4.20.000022
ORF1ab/nsp31142F1142LttCttA12AY.4.20.000022
ORF1ab/nsp31142F1142FttCttT22AY.4.50.000215
ORF1ab/nsp31142F1142LTtcCtc12AY.430.000004
ORF1ab/nsp31142F1142LttCttA12AY.430.000004
ORF1ab/nsp31142F1142StTctCc12AY.440.000006
ORF1ab/nsp31142F1142StTCtCT12AY.440.000006
ORF1ab/nsp31142F1142FttCttT22AY.5.40.000553
ORF1ab/nsp31142F1142del1ttCtt-22AY.520.001629
ORF1ab/nsp31142F1142FttCttT22AY.610.00021
ORF1ab/nsp31142F1142FttCttT22AY.75.10.000361
ORF1ab/nsp31142F1142FttCttT22AY.920.000575
ORF1ab/nsp31142F1142FttCttT22AY.980.000158
ORF1ab/nsp31142F1142StTctCc22B0.000256
ORF1ab/nsp31142F1142StTctCc22B.10.000018
ORF1ab/nsp31142F1142FttCttT22B.1.1.1210.004854
ORF1ab/nsp31142F1142FttCttT22B.1.1.2220.000408
ORF1ab/nsp31142F1142FttCttT22B.1.1.500.001358
ORF1ab/nsp31142F1142LttCttA22B.1.1.5230.003125
ORF1ab/nsp31142F1142LTtcCtc22B.1.1.630.000772
ORF1ab/nsp31142F1142FttCttT22B.1.1.630.000772
ORF1ab/nsp31142F1142del1ttCtt-22B.1.1600.000062
ORF1ab/nsp31142F1142FttCttT22B.1.177.540.001213
ORF1ab/nsp31142F1142FttCttT22B.1.177.730.001133
ORF1ab/nsp31142F1142CtTctGc22B.1.177.730.001133
ORF1ab/nsp31142F1142FttCttT22B.1.2210.000142
ORF1ab/nsp31142F1142CtTctGc22B.1.3200.002491
ORF1ab/nsp31142F1142FttCttT22B.1.3690.00057
ORF1ab/nsp31142F1142FttCttT22B.1.4560.006536
ORF1ab/nsp31142F1142FttCttT22B.1.5770.001375
ORF1ab/nsp31142F1142FttCttT22B.1.5820.000981
ORF1ab/nsp31142F1142FttCttT22B.1.5950.000522
ORF1ab/nsp31142F1142StTCtCT22B.1.617.20.000008
ORF1ab/nsp31142F1142FttCttT22B.1.6230.001073
ORF1ab/nsp31142F1142FttCttT22B.1.910.004149
ORF1ab/nsp31142F1142FttCttT22C.370.000232
ORF1ab/nsp31142F1142delTTC---22C.370.000232
ORF1ab/nsp31142F1142FttCttT22P.70.008734
ORF1ab/nsp31142F1142FttCttT22Q.10.000253
ORF1ab/nsp31142F1142FttCttT110.055556
ORF1ab/nsp31142F1142FttCttT11A0.000387
ORF1ab/nsp31142F1142FttCttT11A.20.000662
ORF1ab/nsp31142F1142StTctCc11A.20.000662
ORF1ab/nsp31142F1142delTTC---11A.280.002646
ORF1ab/nsp31142F1142FttCttT11A.280.002646
ORF1ab/nsp31142F1142FttCttT11AD.20.000219
ORF1ab/nsp31142F1142PTTcCCc11All0
ORF1ab/nsp31142F1142GTTCGGA11All0
ORF1ab/nsp31142F1142FttCttT11AU.10.001266
ORF1ab/nsp31142F1142StTctCc11AY.1030.000006
ORF1ab/nsp31142F1142YtTctAc11AY.1030.000006
ORF1ab/nsp31142F1142delTTC---11AY.1130.000142
ORF1ab/nsp31142F1142FttCttT11AY.1130.000142
ORF1ab/nsp31142F1142FttCttT11AY.1140.000231
ORF1ab/nsp31142F1142FttCttT11AY.1160.000287
ORF1ab/nsp31142F1142delTTC---11AY.1200.000037
ORF1ab/nsp31142F1142CtTctGc11AY.1200.000037
ORF1ab/nsp31142F1142LTtcCtc11AY.1200.000037
ORF1ab/nsp31142F1142FttCttT11AY.120.2.10.000498
ORF1ab/nsp31142F1142FttCttT11AY.130.000161
ORF1ab/nsp31142F1142FttCttT11AY.140.000088
ORF1ab/nsp31142F1142FttCttT11AY.210.001898
ORF1ab/nsp31142F1142FttCttT11AY.240.000431
ORF1ab/nsp31142F1142CtTctGc11AY.250.000006
ORF1ab/nsp31142F1142LTtcCtc11AY.260.000028
ORF1ab/nsp31142F1142delTTC---11AY.30.00001
ORF1ab/nsp31142F1142VTtcGtc11AY.30.00001
ORF1ab/nsp31142F1142FttCttT11AY.300.000396
ORF1ab/nsp31142F1142FttCttT11AY.310.018519
ORF1ab/nsp31142F1142delTTC---11AY.330.000067
ORF1ab/nsp31142F1142FttCttT11AY.340.000097
ORF1ab/nsp31142F1142FttCttT11AY.34.10.00051
ORF1ab/nsp31142F1142FttCttT11AY.350.000233
ORF1ab/nsp31142F1142FttCttT11AY.360.000148
ORF1ab/nsp31142F1142FttCttT11AY.380.000499
ORF1ab/nsp31142F1142del1ttCtt-11AY.390.000025
ORF1ab/nsp31142F1142FttCttT11AY.39.1.10.000725
ORF1ab/nsp31142F1142StTctCc11AY.40.000002
ORF1ab/nsp31142F1142ITtcAtc11AY.40.000002
ORF1ab/nsp31142F1142YtTctAc11AY.40.000002
ORF1ab/nsp31142F1142LTtcCtc11AY.40.000002
ORF1ab/nsp31142F1142FttCttT11AY.4.2.10.000149
ORF1ab/nsp31142F1142FttCttT11AY.400.000964
ORF1ab/nsp31142F1142CtTctGc11AY.430.000004
ORF1ab/nsp31142F1142VTtcGtc11AY.430.000004
ORF1ab/nsp31142F1142StTctCc11AY.430.000004
ORF1ab/nsp31142F1142delTTC---11AY.430.000004
ORF1ab/nsp31142F1142LTtcCtc11AY.440.000006
ORF1ab/nsp31142F1142LTtcCtc11AY.460.000104
ORF1ab/nsp31142F1142FttCttT11AY.46.10.001027
ORF1ab/nsp31142F1142FttCttT11AY.46.30.000934
ORF1ab/nsp31142F1142StTCtCT11AY.46.60.000072
ORF1ab/nsp31142F1142FttCttT11AY.500.000799
ORF1ab/nsp31142F1142delTTC---11AY.540.000095
ORF1ab/nsp31142F1142FttCttT11AY.570.000656
ORF1ab/nsp31142F1142FttCttT11AY.580.000907
ORF1ab/nsp31142F1142LttCttA11AY.590.00053
ORF1ab/nsp31142F1142delTTC---11AY.610.000105
ORF1ab/nsp31142F1142LTtcCtc11AY.620.000436
ORF1ab/nsp31142F1142FttCttT11AY.630.000387
ORF1ab/nsp31142F1142delTTC---11AY.660.00107
ORF1ab/nsp31142F1142delTTC---11AY.670.000464
ORF1ab/nsp31142F1142FttCttT11AY.680.000274
ORF1ab/nsp31142F1142LTtcCtc11AY.680.000274
ORF1ab/nsp31142F1142FttCttT11AY.690.000187
ORF1ab/nsp31142F1142FttCttT11AY.710.000475
ORF1ab/nsp31142F1142LttCttA11AY.75.10.00018
ORF1ab/nsp31142F1142FttCttT11AY.770.001127
ORF1ab/nsp31142F1142FttCttT11AY.790.001211
ORF1ab/nsp31142F1142delTTC---11AY.840.000437
ORF1ab/nsp31142F1142delTTC---11AY.850.000427
ORF1ab/nsp31142F1142FttCttT11AY.9.20.000037
ORF1ab/nsp31142F1142FttCttT11AY.910.00073
ORF1ab/nsp31142F1142YtTctAc11AY.950.000761
ORF1ab/nsp31142F1142delTTC---11AY.98.10.000048
ORF1ab/nsp31142F1142YtTctAc11AY.98.10.000048
ORF1ab/nsp31142F1142LTtcCtc11AY.990.001049
ORF1ab/nsp31142F1142ITtcAtc11AY.990.001049
ORF1ab/nsp31142F1142delTTC---11B.1.10.000018
ORF1ab/nsp31142F1142LttCttA11B.1.10.000018
ORF1ab/nsp31142F1142ATTcGCc11B.1.10.000018
ORF1ab/nsp31142F1142FttCttT11B.1.1.100.001115
ORF1ab/nsp31142F1142YtTctAc11B.1.1.2220.000204
ORF1ab/nsp31142F1142FttCttT11B.1.1.2310.003096
ORF1ab/nsp31142F1142FttCttT11B.1.1.2410.00207
ORF1ab/nsp31142F1142FttCttT11B.1.1.250.000569
ORF1ab/nsp31142F1142StTctCc11B.1.1.2940.001266
ORF1ab/nsp31142F1142FttCttT11B.1.1.3010.001179
ORF1ab/nsp31142F1142FttCttT11B.1.1.3040.002809
ORF1ab/nsp31142F1142FttCttT11B.1.1.3170.000412
ORF1ab/nsp31142F1142LttCttA11B.1.1.3180.000302
ORF1ab/nsp31142F1142ITtcAtc11B.1.1.330.000421
ORF1ab/nsp31142F1142delTTC---11B.1.1.3480.000796
ORF1ab/nsp31142F1142FttCttT11B.1.1.3490.010309
ORF1ab/nsp31142F1142FttCttT11B.1.1.3720.000689
ORF1ab/nsp31142F1142FttCttT11B.1.1.3780.007299
ORF1ab/nsp31142F1142FttCttT11B.1.1.390.00051
ORF1ab/nsp31142F1142delTTC---11B.1.1.4090.002833
ORF1ab/nsp31142F1142FttCttT11B.1.1.4160.000905
ORF1ab/nsp31142F1142FttCttT11B.1.1.50.008333
ORF1ab/nsp31142F1142FttCttT11B.1.1.540.003021
ORF1ab/nsp31142F1142YtTctAc11B.1.1.70.000001
ORF1ab/nsp31142F1142ATTCGCG11B.1.1.70.000001
ORF1ab/nsp31142F1142GTTCGGA11B.1.1.70.000001
ORF1ab/nsp31142F1142FttCttT11B.1.1.830.00271
ORF1ab/nsp31142F1142FttCttT11B.1.1040.00369
ORF1ab/nsp31142F1142FttCttT11B.1.1100.004525
ORF1ab/nsp31142F1142FttCttT11B.1.110.30.000718
ORF1ab/nsp31142F1142FttCttT11B.1.1570.002985
ORF1ab/nsp31142F1142delTTC---11B.1.1600.000031
ORF1ab/nsp31142F1142FttCttT11B.1.160.300.002976
ORF1ab/nsp31142F1142LttCttA11B.1.1660.008475
ORF1ab/nsp31142F1142LTtcCtc11B.1.1770.000013
ORF1ab/nsp31142F1142delTTC---11B.1.177.160.000664
ORF1ab/nsp31142F1142FttCttT11B.1.177.160.000664
ORF1ab/nsp31142F1142FttCttT11B.1.177.180.00116
ORF1ab/nsp31142F1142delTTC---11B.1.177.190.001431
ORF1ab/nsp31142F1142FttCttT11B.1.177.440.000519
ORF1ab/nsp31142F1142delTTC---11B.1.177.510.004566
ORF1ab/nsp31142F1142del1ttCtt-11B.1.177.60.000977
ORF1ab/nsp31142F1142FttCttT11B.1.177.70.000165
ORF1ab/nsp31142F1142FttCttT11B.1.177.720.00339
ORF1ab/nsp31142F1142LTtcCtc11B.1.177.860.000183
ORF1ab/nsp31142F1142LttCttA11B.1.20.000009
ORF1ab/nsp31142F1142del1ttCtt-11B.1.20.000009
ORF1ab/nsp31142F1142PTTcCCc11B.1.20.000009
ORF1ab/nsp31142F1142FttCttT11B.1.2290.009709
ORF1ab/nsp31142F1142FttCttT11B.1.2390.001221
ORF1ab/nsp31142F1142FttCttT11B.1.2400.000216
ORF1ab/nsp31142F1142StTCtCT11B.1.2580.000067
ORF1ab/nsp31142F1142delTTC---11B.1.2580.000067
ORF1ab/nsp31142F1142LttCttA11B.1.2580.000067
ORF1ab/nsp31142F1142FttCttT11B.1.258.170.000104
ORF1ab/nsp31142F1142FttCttT11B.1.258.40.003448
ORF1ab/nsp31142F1142FttCttT11B.1.2650.001271
ORF1ab/nsp31142F1142FttCttT11B.1.2980.002114
ORF1ab/nsp31142F1142FttCttT11B.1.3460.001311
ORF1ab/nsp31142F1142LttCttA11B.1.351.20.000303
ORF1ab/nsp31142F1142del1ttCtt-11B.1.36.10.00114
ORF1ab/nsp31142F1142FttCttT11B.1.36.10.00114
ORF1ab/nsp31142F1142FttCttT11B.1.36.180.00042
ORF1ab/nsp31142F1142delTTC---11B.1.36.180.00042
ORF1ab/nsp31142F1142FttCttT11B.1.36.290.000517
ORF1ab/nsp31142F1142FttCttT11B.1.3770.004566
ORF1ab/nsp31142F1142FttCttT11B.1.390.003906
ORF1ab/nsp31142F1142StTctCc11B.1.3960.000706
ORF1ab/nsp31142F1142delTTC---11B.1.416.10.001563
ORF1ab/nsp31142F1142FttCttT11B.1.4260.001009
ORF1ab/nsp31142F1142LTtcCtc11B.1.4290.000024
ORF1ab/nsp31142F1142FttCttT11B.1.438.10.000107
ORF1ab/nsp31142F1142FttCttT11B.1.440.008333
ORF1ab/nsp31142F1142FttCttT11B.1.466.20.000391
ORF1ab/nsp31142F1142FttCttT11B.1.5170.000427
ORF1ab/nsp31142F1142delTTC---11B.1.5260.000024
ORF1ab/nsp31142F1142FttCttT11B.1.5330.009615
ORF1ab/nsp31142F1142FttCttT11B.1.5410.004425
ORF1ab/nsp31142F1142FttCttT11B.1.5640.000426
ORF1ab/nsp31142F1142StTctCc11B.1.5650.00081
ORF1ab/nsp31142F1142FttCttT11B.1.5710.009709
ORF1ab/nsp31142F1142delTTC---11B.1.617.10.000129
ORF1ab/nsp31142F1142ATTCGCT11B.1.617.20.000004
ORF1ab/nsp31142F1142LTtcCtc11B.1.621.10.000506
ORF1ab/nsp31142F1142FttCttT11B.1.930.000934
ORF1ab/nsp31142F1142delTTC---11B.150.017544
ORF1ab/nsp31142F1142LTtcCtc11B.390.002331
ORF1ab/nsp31142F1142FttCttT11C.10.002392
ORF1ab/nsp31142F1142delTTC---11C.350.000774
ORF1ab/nsp31142F1142FttCttT11C.36.30.000567
ORF1ab/nsp31142F1142FttCttT11C.400.027778
ORF1ab/nsp31142F1142StTctCc11D.20.000075
ORF1ab/nsp31142F1142FttCttT11N.10.016949
ORF1ab/nsp31142F1142delTTC---11P.10.000016
ORF1ab/nsp31142F1142FttCttT11P.1.100.000269
ORF1ab/nsp31142F1142FttCttT11P.1.120.000484
ORF1ab/nsp31142F1142LttCttA11P.1.160.000374
ORF1ab/nsp31142F1142FttCttT11P.1.160.000374
ORF1ab/nsp31142F1142FttCttT11P.1.20.001156
ORF1ab/nsp31142F1142FttCttT11P.1.90.004808
ORF1ab/nsp31142F1142FttCttT11P.30.001595
ORF1ab/nsp31142F1142LttCttA11Q.10.000126
ORF1ab/nsp31142F1142FttCttT11Q.40.000455
ORF1ab/nsp31142F1142del1ttCtt-11R.10.00009

CoV-GLUE is still in development. CoV-GLUE was originally developed as part of COG-UK by Josh Singer using the GLUE framework at the MRC-University of Glasgow Centre for Virus Research (CVR). In 2021 it was redeveloped by Richard Orton to scale to the millions of genome sequences available. We acknowledge support from the MRC (MC_UU_12014/12), WT (220977/Z/20/Z) and UKRI G2P (MR/W005611/1). Please contact Richard Orton with any queries: Richard.Orton@glasgow.ac.uk

CoV-GLUE uses sequence data from GISAID. GISAID data provided via this web application is subject to GISAID's Terms and Conditions.