CoV-GLUEGenomeCountriesLineagesMutationsInsertionsDeletionsUpdated:

CoV-GLUE | Mutations | Mutation

CoV-GLUE Mutation: ORF = ORF1ab/nsp3 : CodonNum = 112 & Codon = gaC

Details of the codons used for the mutation across all lineages (CodonProp is the proportion each codon is used for this AA mutation):

ORFCodonNumMutORF1abMutMutTypeRefCodonMutCodonAACountCodonCountCodonPropGenome Position
ORF1ab/nsp3112D112DD930DsyngaTgaC4068406813053-3055

Details of the mutation no within lineages (LineageCodonProp is the proportion the codon is observed at, at this particular site, on each lineage):

ORFCodonNumMutRefCodonMutCodonCodonCountAACountLineageLineageCodonProp
ORF1ab/nsp3112D112DgaTgaC40684068All0.000778
ORF1ab/nsp3112D112DgaTgaC27992799AY.20.996795
ORF1ab/nsp3112D112DgaTgaC233233AY.9.20.008558
ORF1ab/nsp3112D112DgaTgaC142142AY.430.000629
ORF1ab/nsp3112D112DgaTgaC132132B.1.1.70.000118
ORF1ab/nsp3112D112DgaTgaC108108AY.250.00065
ORF1ab/nsp3112D112DgaTgaC9797B.1.617.20.000365
ORF1ab/nsp3112D112DgaTgaC5353AY.390.00131
ORF1ab/nsp3112D112DgaTgaC5151AY.40.000079
ORF1ab/nsp3112D112DgaTgaC4040AY.1030.000248
ORF1ab/nsp3112D112DgaTgaC2727AY.710.012827
ORF1ab/nsp3112D112DgaTgaC2424AY.620.010458
ORF1ab/nsp3112D112DgaTgaC2323AY.440.00014
ORF1ab/nsp3112D112DgaTgaC1818B.1.1.1890.027231
ORF1ab/nsp3112D112DgaTgaC1515B.1.20.000132
ORF1ab/nsp3112D112DgaTgaC1414AY.370.004425
ORF1ab/nsp3112D112DgaTgaC1414B.1.10.000254
ORF1ab/nsp3112D112DgaTgaC1313AY.380.00649
ORF1ab/nsp3112D112DgaTgaC1111AY.30.000109
ORF1ab/nsp3112D112DgaTgaC1111B.1.5260.000259
ORF1ab/nsp3112D112DgaTgaC99B.10.000082
ORF1ab/nsp3112D112DgaTgaC99B.1.6210.000797
ORF1ab/nsp3112D112DgaTgaC88AY.1020.000212
ORF1ab/nsp3112D112DgaTgaC77AY.520.0057
ORF1ab/nsp3112D112DgaTgaC77AY.610.000733
ORF1ab/nsp3112D112DgaTgaC77AY.650.003731
ORF1ab/nsp3112D112DgaTgaC77AY.750.000392
ORF1ab/nsp3112D112DgaTgaC77P.10.00011
ORF1ab/nsp3112D112DgaTgaC66AY.470.000187
ORF1ab/nsp3112D112DgaTgaC66AY.50.000124
ORF1ab/nsp3112D112DgaTgaC66B.1.2210.000426
ORF1ab/nsp3112D112DgaTgaC66B.1.2420.113208
ORF1ab/nsp3112D112DgaTgaC66B.1.360.000875
ORF1ab/nsp3112D112DgaTgaC55AY.100.00265
ORF1ab/nsp3112D112DgaTgaC55AY.260.000142
ORF1ab/nsp3112D112DgaTgaC55AY.330.000334
ORF1ab/nsp3112D112DgaTgaC55AY.75.10.000902
ORF1ab/nsp3112D112DgaTgaC55B.1.3510.000149
ORF1ab/nsp3112D112DgaTgaC44AY.1190.000141
ORF1ab/nsp3112D112DgaTgaC44AY.200.000155
ORF1ab/nsp3112D112DgaTgaC44B.1.1.2220.000816
ORF1ab/nsp3112D112DgaTgaC44B.1.1.2530.010025
ORF1ab/nsp3112D112DgaTgaC44B.1.5960.000349
ORF1ab/nsp3112D112DgaTgaC33AY.10.001187
ORF1ab/nsp3112D112DgaTgaC33AY.1000.000138
ORF1ab/nsp3112D112DgaTgaC33B.1.1.3690.001339
ORF1ab/nsp3112D112DgaTgaC33B.1.177.180.00348
ORF1ab/nsp3112D112DgaTgaC33B.1.36.190.027778
ORF1ab/nsp3112D112DgaTgaC33B.1.621.10.001517
ORF1ab/nsp3112D112DgaTgaC33P.1.140.000143
ORF1ab/nsp3112D112DgaTgaC220.111111
ORF1ab/nsp3112D112DgaTgaC22AY.1060.00067
ORF1ab/nsp3112D112DgaTgaC22AY.1100.000225
ORF1ab/nsp3112D112DgaTgaC22AY.1160.000574
ORF1ab/nsp3112D112DgaTgaC22AY.130.000322
ORF1ab/nsp3112D112DgaTgaC22AY.190.002281
ORF1ab/nsp3112D112DgaTgaC22AY.290.000032
ORF1ab/nsp3112D112DgaTgaC22AY.510.001818
ORF1ab/nsp3112D112DgaTgaC22AY.590.001059
ORF1ab/nsp3112D112DgaTgaC22AY.600.001876
ORF1ab/nsp3112D112DgaTgaC22AY.670.000929
ORF1ab/nsp3112D112DgaTgaC22AY.860.00166
ORF1ab/nsp3112D112DgaTgaC22AY.9.10.000167
ORF1ab/nsp3112D112DgaTgaC22B.1.1770.000026
ORF1ab/nsp3112D112DgaTgaC22B.1.177.210.000153
ORF1ab/nsp3112D112DgaTgaC22B.1.177.790.004684
ORF1ab/nsp3112D112DgaTgaC22B.1.177.810.000379
ORF1ab/nsp3112D112DgaTgaC22B.1.4290.000047
ORF1ab/nsp3112D112DgaTgaC22B.1.6360.013423
ORF1ab/nsp3112D112DgaTgaC22C.160.002121
ORF1ab/nsp3112D112DgaTgaC11AY.1170.000085
ORF1ab/nsp3112D112DgaTgaC11AY.120.20.001285
ORF1ab/nsp3112D112DgaTgaC11AY.160.00038
ORF1ab/nsp3112D112DgaTgaC11AY.16.10.00047
ORF1ab/nsp3112D112DgaTgaC11AY.230.00007
ORF1ab/nsp3112D112DgaTgaC11AY.350.000233
ORF1ab/nsp3112D112DgaTgaC11AY.360.000148
ORF1ab/nsp3112D112DgaTgaC11AY.39.10.00004
ORF1ab/nsp3112D112DgaTgaC11AY.410.000294
ORF1ab/nsp3112D112DgaTgaC11AY.450.000122
ORF1ab/nsp3112D112DgaTgaC11AY.480.000465
ORF1ab/nsp3112D112DgaTgaC11AY.550.000917
ORF1ab/nsp3112D112DgaTgaC11AY.580.000907
ORF1ab/nsp3112D112DgaTgaC11AY.60.000041
ORF1ab/nsp3112D112DgaTgaC11AY.730.000665
ORF1ab/nsp3112D112DgaTgaC11AY.850.000427
ORF1ab/nsp3112D112DgaTgaC11AY.90.000068
ORF1ab/nsp3112D112DgaTgaC11AY.980.000079
ORF1ab/nsp3112D112DgaTgaC11AY.99.20.000092
ORF1ab/nsp3112D112DgaTgaC11B.1.1.2630.001558
ORF1ab/nsp3112D112DgaTgaC11B.1.1.3060.000438
ORF1ab/nsp3112D112DgaTgaC11B.1.1.3370.003597
ORF1ab/nsp3112D112DgaTgaC11B.1.1.3680.003086
ORF1ab/nsp3112D112DgaTgaC11B.1.1.4320.001266
ORF1ab/nsp3112D112DgaTgaC11B.1.1.5190.00004
ORF1ab/nsp3112D112DgaTgaC11B.1.1080.005814
ORF1ab/nsp3112D112DgaTgaC11B.1.2400.000216
ORF1ab/nsp3112D112DgaTgaC11B.1.2430.00007
ORF1ab/nsp3112D112DgaTgaC11B.1.2580.000067
ORF1ab/nsp3112D112DgaTgaC11B.1.2650.001271
ORF1ab/nsp3112D112DgaTgaC11B.1.351.30.000876
ORF1ab/nsp3112D112DgaTgaC11B.1.36.360.000602
ORF1ab/nsp3112D112DgaTgaC11B.1.4040.001302
ORF1ab/nsp3112D112DgaTgaC11B.1.429.10.012048
ORF1ab/nsp3112D112DgaTgaC11B.1.5170.000427
ORF1ab/nsp3112D112DgaTgaC11B.1.5250.000113
ORF1ab/nsp3112D112DgaTgaC11B.1.5400.009709
ORF1ab/nsp3112D112DgaTgaC11B.1.5600.00463
ORF1ab/nsp3112D112DgaTgaC11B.1.5990.00365
ORF1ab/nsp3112D112DgaTgaC11B.1.6370.000073
ORF1ab/nsp3112D112DgaTgaC11C.350.000774
ORF1ab/nsp3112D112DgaTgaC11D.20.000075
ORF1ab/nsp3112D112DgaTgaC11P.1.150.000232
ORF1ab/nsp3112D112DgaTgaC11Q.10.000126
ORF1ab/nsp3112D112DgaTgaC11Q.70.001111
ORF1ab/nsp3112D112DgaTgaC11Q.80.000165

CoV-GLUE is still in development. CoV-GLUE was originally developed as part of COG-UK by Josh Singer using the GLUE framework at the MRC-University of Glasgow Centre for Virus Research (CVR). In 2021 it was redeveloped by Richard Orton to scale to the millions of genome sequences available. We acknowledge support from the MRC (MC_UU_12014/12), WT (220977/Z/20/Z) and UKRI G2P (MR/W005611/1). Please contact Richard Orton with any queries: Richard.Orton@glasgow.ac.uk

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