CoV-GLUEGenomeCountriesLineagesMutationsInsertionsDeletionsUpdated:

CoV-GLUE | Mutations | Mutation

CoV-GLUE Mutation: ORF = ORF1ab/nsp3 : CodonNum = 112

Details of the codons used for the mutation across all lineages (CodonProp is the proportion each codon is used for this AA mutation):

ORFCodonNumMutORF1abMutMutTypeRefCodonMutCodonAACountCodonCountCodonPropGenome Position
ORF1ab/nsp3112D112DD930DsyngaTgaC4068406813053-3055
ORF1ab/nsp3112D112YD930YnonsynGatTat95095013053-3055
ORF1ab/nsp3112D112CD930CnonsynGAtTGt41041013053-3055
ORF1ab/nsp3112D112ND930NnonsynGatAat2802780.9928573053-3055
ORF1ab/nsp3112D112ND930NnonsynGaTAaC28020.007142863053-3055
ORF1ab/nsp3112D112GD930GnonsyngAtgGt24524513053-3055
ORF1ab/nsp3112D112ED930EnonsyngaTgaA93660.7096773053-3055
ORF1ab/nsp3112D112ED930EnonsyngaTgaG93270.2903233053-3055
ORF1ab/nsp3112D112AD930AnonsyngAtgCt575713053-3055
ORF1ab/nsp3112D112delD930deldelGAT---505013053-3055
ORF1ab/nsp3112D112HD930HnonsynGatCat7713053-3055
ORF1ab/nsp3112D112VD930VnonsyngAtgTt4413053-3055
ORF1ab/nsp3112D112ID930InonsynGAtATt320.6666673053-3055
ORF1ab/nsp3112D112ID930InonsynGATATA310.3333333053-3055
ORF1ab/nsp3112D112XD930XnonsynGaTTaA2213053-3055
ORF1ab/nsp3112D112LD930LnonsynGATTTA2213053-3055
ORF1ab/nsp3112D112KD930KnonsynGaTAaA1113053-3055
ORF1ab/nsp3112D112QD930QnonsynGaTCaA1113053-3055
ORF1ab/nsp3112D112del1D930del1delgaTga-1113053-3055
ORF1ab/nsp3112D112FD930FnonsynGAtTTt1113053-3055

Details of the mutation no within lineages (LineageCodonProp is the proportion the codon is observed at, at this particular site, on each lineage):

ORFCodonNumMutRefCodonMutCodonCodonCountAACountLineageLineageCodonProp
ORF1ab/nsp3112D112DgaTgaC40684068All0.000778
ORF1ab/nsp3112D112DgaTgaC27992799AY.20.996795
ORF1ab/nsp3112D112YGatTat950950All0.000182
ORF1ab/nsp3112D112CGAtTGt410410All0.000078
ORF1ab/nsp3112D112CGAtTGt398398B.1.5260.009355
ORF1ab/nsp3112D112NGatAat278280All0.000053
ORF1ab/nsp3112D112NGaTAaC2280All0
ORF1ab/nsp3112D112GgAtgGt245245All0.000047
ORF1ab/nsp3112D112DgaTgaC233233AY.9.20.008558
ORF1ab/nsp3112D112YGatTat189189C.350.146285
ORF1ab/nsp3112D112YGatTat159159AY.40.000247
ORF1ab/nsp3112D112DgaTgaC142142AY.430.000629
ORF1ab/nsp3112D112DgaTgaC132132B.1.1.70.000118
ORF1ab/nsp3112D112DgaTgaC108108AY.250.00065
ORF1ab/nsp3112D112YGatTat105105P.10.001654
ORF1ab/nsp3112D112DgaTgaC9797B.1.617.20.000365
ORF1ab/nsp3112D112EgaTgaA6693All0.000013
ORF1ab/nsp3112D112EgaTgaG2793All0.000005
ORF1ab/nsp3112D112YGatTat8181B.1.1770.001067
ORF1ab/nsp3112D112YGatTat7272B.1.1.70.000064
ORF1ab/nsp3112D112NGatAat6464B.1.1.70.000057
ORF1ab/nsp3112D112AgAtgCt5757All0.000011
ORF1ab/nsp3112D112GgAtgGt5656AY.40.000087
ORF1ab/nsp3112D112DgaTgaC5353AY.390.00131
ORF1ab/nsp3112D112YGatTat5353B.1.617.20.0002
ORF1ab/nsp3112D112DgaTgaC5151AY.40.000079
ORF1ab/nsp3112D112delGAT---5050All0.00001
ORF1ab/nsp3112D112GgAtgGt4949B.1.1.70.000044
ORF1ab/nsp3112D112NGatAat4949B.1.258.150.924528
ORF1ab/nsp3112D112EgaTgaA4344B.1.1.70.000038
ORF1ab/nsp3112D112EgaTgaG144B.1.1.70.000001
ORF1ab/nsp3112D112DgaTgaC4040AY.1030.000248
ORF1ab/nsp3112D112YGatTat3636B.1.20.000317
ORF1ab/nsp3112D112YGatTat3232AY.430.000142
ORF1ab/nsp3112D112DgaTgaC2727AY.710.012827
ORF1ab/nsp3112D112AgAtgCt2525B.1.617.20.000094
ORF1ab/nsp3112D112DgaTgaC2424AY.620.010458
ORF1ab/nsp3112D112DgaTgaC2323AY.440.00014
ORF1ab/nsp3112D112GgAtgGt1919B.1.20.000167
ORF1ab/nsp3112D112YGatTat1818AY.250.000108
ORF1ab/nsp3112D112DgaTgaC1818B.1.1.1890.027231
ORF1ab/nsp3112D112GgAtgGt1616AY.1110.00293
ORF1ab/nsp3112D112YGatTat1515B.10.000137
ORF1ab/nsp3112D112DgaTgaC1515B.1.20.000132
ORF1ab/nsp3112D112NGatAat1414AY.130.002254
ORF1ab/nsp3112D112DgaTgaC1414AY.370.004425
ORF1ab/nsp3112D112DgaTgaC1414B.1.10.000254
ORF1ab/nsp3112D112NGatAat1414B.1.1.4320.017722
ORF1ab/nsp3112D112DgaTgaC1313AY.380.00649
ORF1ab/nsp3112D112AgAtgCt1313B.1.6370.00095
ORF1ab/nsp3112D112NGatAat1212AY.40.000019
ORF1ab/nsp3112D112YGatTat1111AY.1030.000068
ORF1ab/nsp3112D112DgaTgaC1111AY.30.000109
ORF1ab/nsp3112D112YGatTat1111AY.390.000272
ORF1ab/nsp3112D112NGatAat1111B.10.000101
ORF1ab/nsp3112D112YGatTat1111B.1.1.4340.003834
ORF1ab/nsp3112D112DgaTgaC1111B.1.5260.000259
ORF1ab/nsp3112D112EgaTgaA1010AY.430.000044
ORF1ab/nsp3112D112YGatTat1010AY.770.011274
ORF1ab/nsp3112D112GgAtgGt1010B.10.000092
ORF1ab/nsp3112D112NGatAat1010B.1.617.20.000038
ORF1ab/nsp3112D112GgAtgGt1010P.10.000158
ORF1ab/nsp3112D112DgaTgaC99B.10.000082
ORF1ab/nsp3112D112GgAtgGt99B.1.617.20.000034
ORF1ab/nsp3112D112DgaTgaC99B.1.6210.000797
ORF1ab/nsp3112D112DgaTgaC88AY.1020.000212
ORF1ab/nsp3112D112GgAtgGt88AY.1030.00005
ORF1ab/nsp3112D112CGAtTGt88B.10.000073
ORF1ab/nsp3112D112NGatAat88B.1.3690.002282
ORF1ab/nsp3112D112HGatCat77All0.000001
ORF1ab/nsp3112D112NGatAat77AY.250.000042
ORF1ab/nsp3112D112NGatAat77AY.4.20.000152
ORF1ab/nsp3112D112EgaTgaG77AY.440.000043
ORF1ab/nsp3112D112DgaTgaC77AY.520.0057
ORF1ab/nsp3112D112DgaTgaC77AY.610.000733
ORF1ab/nsp3112D112DgaTgaC77AY.650.003731
ORF1ab/nsp3112D112DgaTgaC77AY.750.000392
ORF1ab/nsp3112D112YGatTat77AY.980.000553
ORF1ab/nsp3112D112YGatTat77B.1.160.140.014831
ORF1ab/nsp3112D112NGatAat77B.1.20.000062
ORF1ab/nsp3112D112DgaTgaC77P.10.00011
ORF1ab/nsp3112D112GgAtgGt66AY.140.000528
ORF1ab/nsp3112D112NGatAat66AY.200.000233
ORF1ab/nsp3112D112DgaTgaC66AY.470.000187
ORF1ab/nsp3112D112DgaTgaC66AY.50.000124
ORF1ab/nsp3112D112NGatAat66AY.980.000474
ORF1ab/nsp3112D112EgaTgaA36B.10.000027
ORF1ab/nsp3112D112EgaTgaG36B.10.000027
ORF1ab/nsp3112D112YGatTat66B.1.1.370.001157
ORF1ab/nsp3112D112DgaTgaC66B.1.2210.000426
ORF1ab/nsp3112D112DgaTgaC66B.1.2420.113208
ORF1ab/nsp3112D112DgaTgaC66B.1.360.000875
ORF1ab/nsp3112D112DgaTgaC55AY.100.00265
ORF1ab/nsp3112D112YGatTat55AY.1200.000186
ORF1ab/nsp3112D112DgaTgaC55AY.260.000142
ORF1ab/nsp3112D112GgAtgGt55AY.30.00005
ORF1ab/nsp3112D112DgaTgaC55AY.330.000334
ORF1ab/nsp3112D112YGatTat55AY.440.00003
ORF1ab/nsp3112D112DgaTgaC55AY.75.10.000902
ORF1ab/nsp3112D112NGatAat55B.1.10.000091
ORF1ab/nsp3112D112YGatTat55B.1.1.3160.004625
ORF1ab/nsp3112D112YGatTat55B.1.2410.004058
ORF1ab/nsp3112D112DgaTgaC55B.1.3510.000149
ORF1ab/nsp3112D112delGAT---440.222222
ORF1ab/nsp3112D112VgAtgTt44All0.000001
ORF1ab/nsp3112D112YGatTat44AY.1020.000106
ORF1ab/nsp3112D112YGatTat44AY.1060.00134
ORF1ab/nsp3112D112DgaTgaC44AY.1190.000141
ORF1ab/nsp3112D112DgaTgaC44AY.200.000155
ORF1ab/nsp3112D112YGatTat44AY.290.000063
ORF1ab/nsp3112D112YGatTat44AY.4.40.001637
ORF1ab/nsp3112D112delGAT---44AY.430.000018
ORF1ab/nsp3112D112NGatAat44AY.430.000018
ORF1ab/nsp3112D112delGAT---44B.10.000037
ORF1ab/nsp3112D112DgaTgaC44B.1.1.2220.000816
ORF1ab/nsp3112D112YGatTat44B.1.1.2410.008282
ORF1ab/nsp3112D112DgaTgaC44B.1.1.2530.010025
ORF1ab/nsp3112D112YGatTat44B.1.1.2970.008949
ORF1ab/nsp3112D112delGAT---44B.1.1.70.000004
ORF1ab/nsp3112D112YGatTat44B.1.351.20.00121
ORF1ab/nsp3112D112DgaTgaC44B.1.5960.000349
ORF1ab/nsp3112D112IGAtATt23All0
ORF1ab/nsp3112D112IGATATA13All0
ORF1ab/nsp3112D112DgaTgaC33AY.10.001187
ORF1ab/nsp3112D112GgAtgGt33AY.1000.000138
ORF1ab/nsp3112D112DgaTgaC33AY.1000.000138
ORF1ab/nsp3112D112NGatAat33AY.1000.000138
ORF1ab/nsp3112D112GgAtgGt33AY.1180.000188
ORF1ab/nsp3112D112NGatAat33AY.30.00003
ORF1ab/nsp3112D112YGatTat33AY.370.000948
ORF1ab/nsp3112D112NGatAat33AY.390.000074
ORF1ab/nsp3112D112AgAtgCt33AY.40.000005
ORF1ab/nsp3112D112delGAT---33AY.40.000005
ORF1ab/nsp3112D112AgAtgCt33AY.98.10.000145
ORF1ab/nsp3112D112AgAtgCt33B.10.000027
ORF1ab/nsp3112D112YGatTat33B.1.1.250.001706
ORF1ab/nsp3112D112GgAtgGt33B.1.1.3060.001315
ORF1ab/nsp3112D112delGAT---33B.1.1.330.001263
ORF1ab/nsp3112D112DgaTgaC33B.1.1.3690.001339
ORF1ab/nsp3112D112YGatTat33B.1.1.5190.000119
ORF1ab/nsp3112D112AgAtgCt33B.1.1.70.000003
ORF1ab/nsp3112D112YGatTat33B.1.1600.000094
ORF1ab/nsp3112D112DgaTgaC33B.1.177.180.00348
ORF1ab/nsp3112D112EgaTgaG33B.1.360.000438
ORF1ab/nsp3112D112DgaTgaC33B.1.36.190.027778
ORF1ab/nsp3112D112DgaTgaC33B.1.621.10.001517
ORF1ab/nsp3112D112YGatTat33P.1.120.001452
ORF1ab/nsp3112D112DgaTgaC33P.1.140.000143
ORF1ab/nsp3112D112NGaTAaC220.111111
ORF1ab/nsp3112D112DgaTgaC220.111111
ORF1ab/nsp3112D112NGatAat22A.23.10.001408
ORF1ab/nsp3112D112LGATTTA22All0
ORF1ab/nsp3112D112XGaTTaA22All0
ORF1ab/nsp3112D112GgAtgGt22AY.1020.000053
ORF1ab/nsp3112D112IGATATA12AY.1050.000643
ORF1ab/nsp3112D112EgaTgaG12AY.1050.000643
ORF1ab/nsp3112D112IGAtATt12AY.1050.000643
ORF1ab/nsp3112D112EgaTgaA12AY.1050.000643
ORF1ab/nsp3112D112DgaTgaC22AY.1060.00067
ORF1ab/nsp3112D112DgaTgaC22AY.1100.000225
ORF1ab/nsp3112D112DgaTgaC22AY.1160.000574
ORF1ab/nsp3112D112DgaTgaC22AY.130.000322
ORF1ab/nsp3112D112DgaTgaC22AY.190.002281
ORF1ab/nsp3112D112YGatTat22AY.230.000139
ORF1ab/nsp3112D112NGatAat22AY.260.000057
ORF1ab/nsp3112D112DgaTgaC22AY.290.000032
ORF1ab/nsp3112D112GgAtgGt22AY.390.000049
ORF1ab/nsp3112D112GgAtgGt22AY.440.000012
ORF1ab/nsp3112D112YGatTat22AY.450.000243
ORF1ab/nsp3112D112YGatTat22AY.50.000041
ORF1ab/nsp3112D112DgaTgaC22AY.510.001818
ORF1ab/nsp3112D112GgAtgGt22AY.540.000191
ORF1ab/nsp3112D112DgaTgaC22AY.590.001059
ORF1ab/nsp3112D112DgaTgaC22AY.600.001876
ORF1ab/nsp3112D112DgaTgaC22AY.670.000929
ORF1ab/nsp3112D112NGatAat22AY.750.000112
ORF1ab/nsp3112D112DgaTgaC22AY.860.00166
ORF1ab/nsp3112D112NGatAat22AY.90.000135
ORF1ab/nsp3112D112DgaTgaC22AY.9.10.000167
ORF1ab/nsp3112D112GgAtgGt22AY.900.001369
ORF1ab/nsp3112D112YGatTat22B.1.10.000036
ORF1ab/nsp3112D112CGAtTGt22B.1.10.000036
ORF1ab/nsp3112D112NGatAat22B.1.1.10.000653
ORF1ab/nsp3112D112YGatTat22B.1.1.2160.001781
ORF1ab/nsp3112D112YGatTat22B.1.1.2220.000408
ORF1ab/nsp3112D112EgaTgaG22B.1.1.2370.010811
ORF1ab/nsp3112D112GgAtgGt22B.1.1.280.000622
ORF1ab/nsp3112D112delGAT---22B.1.1.3480.001592
ORF1ab/nsp3112D112HGatCat22B.1.1.70.000002
ORF1ab/nsp3112D112DgaTgaC22B.1.1770.000026
ORF1ab/nsp3112D112DgaTgaC22B.1.177.210.000153
ORF1ab/nsp3112D112DgaTgaC22B.1.177.790.004684
ORF1ab/nsp3112D112DgaTgaC22B.1.177.810.000379
ORF1ab/nsp3112D112delGAT---22B.1.20.000018
ORF1ab/nsp3112D112EgaTgaG22B.1.2210.000142
ORF1ab/nsp3112D112GgAtgGt22B.1.3240.00321
ORF1ab/nsp3112D112GgAtgGt22B.1.3510.000059
ORF1ab/nsp3112D112YGatTat22B.1.3510.000059
ORF1ab/nsp3112D112NGatAat22B.1.351.50.001199
ORF1ab/nsp3112D112YGatTat22B.1.36.80.002
ORF1ab/nsp3112D112NGatAat22B.1.4290.000047
ORF1ab/nsp3112D112DgaTgaC22B.1.4290.000047
ORF1ab/nsp3112D112GgAtgGt22B.1.5250.000226
ORF1ab/nsp3112D112YGatTat22B.1.617.10.000258
ORF1ab/nsp3112D112GgAtgGt22B.1.6280.000705
ORF1ab/nsp3112D112DgaTgaC22B.1.6360.013423
ORF1ab/nsp3112D112DgaTgaC22C.160.002121
ORF1ab/nsp3112D112delGAT---22N.60.014184
ORF1ab/nsp3112D112AgAtgCt22P.10.000032
ORF1ab/nsp3112D112NGatAat22P.1.150.000465
ORF1ab/nsp3112D112YGatTat22R.10.00018
ORF1ab/nsp3112D112YGatTat11A.2.20.001689
ORF1ab/nsp3112D112EgaTgaG11A.60.005128
ORF1ab/nsp3112D112QGaTCaA11All0
ORF1ab/nsp3112D112del1gaTga-11All0
ORF1ab/nsp3112D112FGAtTTt11All0
ORF1ab/nsp3112D112KGaTAaA11All0
ORF1ab/nsp3112D112GgAtgGt11AY.10.000396
ORF1ab/nsp3112D112YGatTat11AY.1000.000046
ORF1ab/nsp3112D112VgAtgTt11AY.1000.000046
ORF1ab/nsp3112D112AgAtgCt11AY.1020.000027
ORF1ab/nsp3112D112NGatAat11AY.1020.000027
ORF1ab/nsp3112D112delGAT---11AY.1020.000027
ORF1ab/nsp3112D112NGatAat11AY.1030.000006
ORF1ab/nsp3112D112VgAtgTt11AY.1030.000006
ORF1ab/nsp3112D112EgaTgaA11AY.1040.001984
ORF1ab/nsp3112D112KGaTAaA11AY.1050.000643
ORF1ab/nsp3112D112XGaTTaA11AY.1050.000643
ORF1ab/nsp3112D112YGatTat11AY.1050.000643
ORF1ab/nsp3112D112FGAtTTt11AY.1050.000643
ORF1ab/nsp3112D112NGatAat11AY.1050.000643
ORF1ab/nsp3112D112LGATTTA11AY.1050.000643
ORF1ab/nsp3112D112NGatAat11AY.1130.000142
ORF1ab/nsp3112D112YGatTat11AY.1160.000287
ORF1ab/nsp3112D112DgaTgaC11AY.1170.000085
ORF1ab/nsp3112D112NGatAat11AY.1170.000085
ORF1ab/nsp3112D112HGatCat11AY.1180.000063
ORF1ab/nsp3112D112DgaTgaC11AY.120.20.001285
ORF1ab/nsp3112D112GgAtgGt11AY.120.2.10.000498
ORF1ab/nsp3112D112YGatTat11AY.1210.000135
ORF1ab/nsp3112D112DgaTgaC11AY.160.00038
ORF1ab/nsp3112D112DgaTgaC11AY.16.10.00047
ORF1ab/nsp3112D112EgaTgaA11AY.200.000039
ORF1ab/nsp3112D112DgaTgaC11AY.230.00007
ORF1ab/nsp3112D112GgAtgGt11AY.240.000431
ORF1ab/nsp3112D112GgAtgGt11AY.250.000006
ORF1ab/nsp3112D112delGAT---11AY.250.000006
ORF1ab/nsp3112D112GgAtgGt11AY.260.000028
ORF1ab/nsp3112D112delGAT---11AY.260.000028
ORF1ab/nsp3112D112delGAT---11AY.30.00001
ORF1ab/nsp3112D112delGAT---11AY.300.000396
ORF1ab/nsp3112D112GgAtgGt11AY.300.000396
ORF1ab/nsp3112D112YGatTat11AY.330.000067
ORF1ab/nsp3112D112NGatAat11AY.340.000097
ORF1ab/nsp3112D112DgaTgaC11AY.350.000233
ORF1ab/nsp3112D112GgAtgGt11AY.350.000233
ORF1ab/nsp3112D112DgaTgaC11AY.360.000148
ORF1ab/nsp3112D112AgAtgCt11AY.390.000025
ORF1ab/nsp3112D112EgaTgaA11AY.390.000025
ORF1ab/nsp3112D112DgaTgaC11AY.39.10.00004
ORF1ab/nsp3112D112VgAtgTt11AY.39.10.00004
ORF1ab/nsp3112D112HGatCat11AY.40.000002
ORF1ab/nsp3112D112YGatTat11AY.4.2.10.000149
ORF1ab/nsp3112D112YGatTat11AY.4.50.000107
ORF1ab/nsp3112D112NGatAat11AY.410.000294
ORF1ab/nsp3112D112DgaTgaC11AY.410.000294
ORF1ab/nsp3112D112delGAT---11AY.420.00004
ORF1ab/nsp3112D112NGatAat11AY.420.00004
ORF1ab/nsp3112D112GgAtgGt11AY.430.000004
ORF1ab/nsp3112D112HGatCat11AY.430.000004
ORF1ab/nsp3112D112NGatAat11AY.440.000006
ORF1ab/nsp3112D112IGAtATt11AY.440.000006
ORF1ab/nsp3112D112DgaTgaC11AY.450.000122
ORF1ab/nsp3112D112delGAT---11AY.460.000104
ORF1ab/nsp3112D112delGAT---11AY.46.60.000072
ORF1ab/nsp3112D112GgAtgGt11AY.470.000031
ORF1ab/nsp3112D112DgaTgaC11AY.480.000465
ORF1ab/nsp3112D112delGAT---11AY.50.000021
ORF1ab/nsp3112D112NGatAat11AY.50.000021
ORF1ab/nsp3112D112GgAtgGt11AY.50.000021
ORF1ab/nsp3112D112YGatTat11AY.510.000909
ORF1ab/nsp3112D112YGatTat11AY.540.000095
ORF1ab/nsp3112D112DgaTgaC11AY.550.000917
ORF1ab/nsp3112D112NGatAat11AY.560.001605
ORF1ab/nsp3112D112DgaTgaC11AY.580.000907
ORF1ab/nsp3112D112DgaTgaC11AY.60.000041
ORF1ab/nsp3112D112YGatTat11AY.60.000041
ORF1ab/nsp3112D112YGatTat11AY.610.000105
ORF1ab/nsp3112D112GgAtgGt11AY.610.000105
ORF1ab/nsp3112D112delGAT---11AY.650.000533
ORF1ab/nsp3112D112YGatTat11AY.70.000196
ORF1ab/nsp3112D112GgAtgGt11AY.7.10.000113
ORF1ab/nsp3112D112NGatAat11AY.7.10.000113
ORF1ab/nsp3112D112NGatAat11AY.7.20.000559
ORF1ab/nsp3112D112DgaTgaC11AY.730.000665
ORF1ab/nsp3112D112YGatTat11AY.740.000116
ORF1ab/nsp3112D112YGatTat11AY.750.000056
ORF1ab/nsp3112D112YGatTat11AY.75.10.00018
ORF1ab/nsp3112D112YGatTat11AY.780.001541
ORF1ab/nsp3112D112EgaTgaG11AY.840.000437
ORF1ab/nsp3112D112DgaTgaC11AY.850.000427
ORF1ab/nsp3112D112DgaTgaC11AY.90.000068
ORF1ab/nsp3112D112DgaTgaC11AY.980.000079
ORF1ab/nsp3112D112GgAtgGt11AY.98.10.000048
ORF1ab/nsp3112D112YGatTat11AY.98.10.000048
ORF1ab/nsp3112D112delGAT---11AY.990.001049
ORF1ab/nsp3112D112NGatAat11AY.99.10.001553
ORF1ab/nsp3112D112DgaTgaC11AY.99.20.000092
ORF1ab/nsp3112D112YGatTat11AZ.20.000821
ORF1ab/nsp3112D112HGatCat11B0.000128
ORF1ab/nsp3112D112XGaTTaA11B.10.000009
ORF1ab/nsp3112D112del1gaTga-11B.10.000009
ORF1ab/nsp3112D112QGaTCaA11B.10.000009
ORF1ab/nsp3112D112HGatCat11B.10.000009
ORF1ab/nsp3112D112AgAtgCt11B.1.10.000018
ORF1ab/nsp3112D112delGAT---11B.1.10.000018
ORF1ab/nsp3112D112YGatTat11B.1.1.1890.001513
ORF1ab/nsp3112D112EgaTgaG11B.1.1.2160.00089
ORF1ab/nsp3112D112DgaTgaC11B.1.1.2630.001558
ORF1ab/nsp3112D112GgAtgGt11B.1.1.2650.003155
ORF1ab/nsp3112D112NGatAat11B.1.1.2690.001353
ORF1ab/nsp3112D112YGatTat11B.1.1.280.000311
ORF1ab/nsp3112D112YGatTat11B.1.1.2820.011628
ORF1ab/nsp3112D112NGatAat11B.1.1.3060.000438
ORF1ab/nsp3112D112YGatTat11B.1.1.3060.000438
ORF1ab/nsp3112D112DgaTgaC11B.1.1.3060.000438
ORF1ab/nsp3112D112DgaTgaC11B.1.1.3370.003597
ORF1ab/nsp3112D112DgaTgaC11B.1.1.3680.003086
ORF1ab/nsp3112D112delGAT---11B.1.1.3690.000446
ORF1ab/nsp3112D112EgaTgaA11B.1.1.370.000193
ORF1ab/nsp3112D112YGatTat11B.1.1.3720.000689
ORF1ab/nsp3112D112VgAtgTt11B.1.1.390.00051
ORF1ab/nsp3112D112DgaTgaC11B.1.1.4320.001266
ORF1ab/nsp3112D112NGatAat11B.1.1.500.000679
ORF1ab/nsp3112D112EgaTgaG11B.1.1.500.000679
ORF1ab/nsp3112D112DgaTgaC11B.1.1.5190.00004
ORF1ab/nsp3112D112YGatTat11B.1.1.700.000341
ORF1ab/nsp3112D112DgaTgaC11B.1.1080.005814
ORF1ab/nsp3112D112YGatTat11B.1.1470.000756
ORF1ab/nsp3112D112GgAtgGt11B.1.1600.000031
ORF1ab/nsp3112D112NGatAat11B.1.160.220.006757
ORF1ab/nsp3112D112GgAtgGt11B.1.160.300.002976
ORF1ab/nsp3112D112GgAtgGt11B.1.1770.000013
ORF1ab/nsp3112D112EgaTgaA11B.1.1770.000013
ORF1ab/nsp3112D112NGatAat11B.1.1770.000013
ORF1ab/nsp3112D112delGAT---11B.1.1770.000013
ORF1ab/nsp3112D112YGatTat11B.1.177.70.000165
ORF1ab/nsp3112D112CGAtTGt11B.1.20.000009
ORF1ab/nsp3112D112LGATTTA11B.1.20.000009
ORF1ab/nsp3112D112delGAT---11B.1.2060.000816
ORF1ab/nsp3112D112NGatAat11B.1.2060.000816
ORF1ab/nsp3112D112AgAtgCt11B.1.2340.000132
ORF1ab/nsp3112D112DgaTgaC11B.1.2400.000216
ORF1ab/nsp3112D112YGatTat11B.1.2400.000216
ORF1ab/nsp3112D112DgaTgaC11B.1.2430.00007
ORF1ab/nsp3112D112GgAtgGt11B.1.2430.00007
ORF1ab/nsp3112D112GgAtgGt11B.1.2580.000067
ORF1ab/nsp3112D112DgaTgaC11B.1.2580.000067
ORF1ab/nsp3112D112EgaTgaA11B.1.258.110.000396
ORF1ab/nsp3112D112EgaTgaG11B.1.258.170.000104
ORF1ab/nsp3112D112YGatTat11B.1.258.170.000104
ORF1ab/nsp3112D112DgaTgaC11B.1.2650.001271
ORF1ab/nsp3112D112AgAtgCt11B.1.2980.002114
ORF1ab/nsp3112D112delGAT---11B.1.3490.000715
ORF1ab/nsp3112D112DgaTgaC11B.1.351.30.000876
ORF1ab/nsp3112D112YGatTat11B.1.360.000146
ORF1ab/nsp3112D112GgAtgGt11B.1.360.000146
ORF1ab/nsp3112D112YGatTat11B.1.36.10.00114
ORF1ab/nsp3112D112YGatTat11B.1.36.160.001425
ORF1ab/nsp3112D112YGatTat11B.1.36.170.000494
ORF1ab/nsp3112D112YGatTat11B.1.36.180.00042
ORF1ab/nsp3112D112YGatTat11B.1.36.290.000517
ORF1ab/nsp3112D112DgaTgaC11B.1.36.360.000602
ORF1ab/nsp3112D112EgaTgaG11B.1.36.380.001642
ORF1ab/nsp3112D112YGatTat11B.1.3670.000792
ORF1ab/nsp3112D112NGatAat11B.1.3710.001122
ORF1ab/nsp3112D112YGatTat11B.1.3960.000706
ORF1ab/nsp3112D112YGatTat11B.1.3990.001934
ORF1ab/nsp3112D112NGatAat11B.1.4000.000429
ORF1ab/nsp3112D112EgaTgaA11B.1.4000.000429
ORF1ab/nsp3112D112DgaTgaC11B.1.4040.001302
ORF1ab/nsp3112D112delGAT---11B.1.416.10.001563
ORF1ab/nsp3112D112EgaTgaA11B.1.4260.001009
ORF1ab/nsp3112D112GgAtgGt11B.1.4290.000024
ORF1ab/nsp3112D112delGAT---11B.1.4290.000024
ORF1ab/nsp3112D112DgaTgaC11B.1.429.10.012048
ORF1ab/nsp3112D112YGatTat11B.1.4560.003268
ORF1ab/nsp3112D112DgaTgaC11B.1.5170.000427
ORF1ab/nsp3112D112YGatTat11B.1.5240.001406
ORF1ab/nsp3112D112DgaTgaC11B.1.5250.000113
ORF1ab/nsp3112D112EgaTgaG11B.1.5250.000113
ORF1ab/nsp3112D112DgaTgaC11B.1.5400.009709
ORF1ab/nsp3112D112DgaTgaC11B.1.5600.00463
ORF1ab/nsp3112D112EgaTgaG11B.1.5610.000397
ORF1ab/nsp3112D112delGAT---11B.1.5610.000397
ORF1ab/nsp3112D112YGatTat11B.1.5760.000907
ORF1ab/nsp3112D112NGatAat11B.1.5760.000907
ORF1ab/nsp3112D112delGAT---11B.1.5770.000687
ORF1ab/nsp3112D112DgaTgaC11B.1.5990.00365
ORF1ab/nsp3112D112NGatAat11B.1.6060.006024
ORF1ab/nsp3112D112YGatTat11B.1.6100.003546
ORF1ab/nsp3112D112delGAT---11B.1.617.20.000004
ORF1ab/nsp3112D112CGAtTGt11B.1.617.20.000004
ORF1ab/nsp3112D112DgaTgaC11B.1.6370.000073
ORF1ab/nsp3112D112GgAtgGt11B.1.9.40.006135
ORF1ab/nsp3112D112NGatAat11B.6.60.000889
ORF1ab/nsp3112D112DgaTgaC11C.350.000774
ORF1ab/nsp3112D112YGatTat11C.370.000116
ORF1ab/nsp3112D112GgAtgGt11C.370.000116
ORF1ab/nsp3112D112DgaTgaC11D.20.000075
ORF1ab/nsp3112D112GgAtgGt11N.50.001767
ORF1ab/nsp3112D112EgaTgaA11P.10.000016
ORF1ab/nsp3112D112delGAT---11P.10.000016
ORF1ab/nsp3112D112NGatAat11P.10.000016
ORF1ab/nsp3112D112NGatAat11P.1.140.000048
ORF1ab/nsp3112D112GgAtgGt11P.1.150.000232
ORF1ab/nsp3112D112DgaTgaC11P.1.150.000232
ORF1ab/nsp3112D112NGatAat11P.1.170.000162
ORF1ab/nsp3112D112GgAtgGt11P.1.70.000319
ORF1ab/nsp3112D112GgAtgGt11P.30.001595
ORF1ab/nsp3112D112DgaTgaC11Q.10.000126
ORF1ab/nsp3112D112YGatTat11Q.10.000126
ORF1ab/nsp3112D112GgAtgGt11Q.30.000145
ORF1ab/nsp3112D112NGatAat11Q.30.000145
ORF1ab/nsp3112D112DgaTgaC11Q.70.001111
ORF1ab/nsp3112D112DgaTgaC11Q.80.000165

CoV-GLUE is still in development. CoV-GLUE was originally developed as part of COG-UK by Josh Singer using the GLUE framework at the MRC-University of Glasgow Centre for Virus Research (CVR). In 2021 it was redeveloped by Richard Orton to scale to the millions of genome sequences available. We acknowledge support from the MRC (MC_UU_12014/12), WT (220977/Z/20/Z) and UKRI G2P (MR/W005611/1). Please contact Richard Orton with any queries: Richard.Orton@glasgow.ac.uk

CoV-GLUE uses sequence data from GISAID. GISAID data provided via this web application is subject to GISAID's Terms and Conditions.