CoV-GLUE | Mutations | Mutation

CoV-GLUE Mutation: ORF = ORF1ab/nsp3 : CodonNum = 1117

Details of the codons used for the mutation across all lineages (CodonProp is the proportion each codon is used for this AA mutation):

ORFCodonNumMutORF1abMutMutTypeRefCodonMutCodonAACountCodonCountCodonPropGenome Position
ORF1ab/nsp31117I1117II1935IsynatCatT920490730.9857676068-6070
ORF1ab/nsp31117I1117II1935IsynatCatA92041310.01423296068-6070
ORF1ab/nsp31117I1117VI1935VnonsynAtcGtc5815800.9982796068-6070
ORF1ab/nsp31117I1117VI1935VnonsynAtCGtT58110.001721176068-6070
ORF1ab/nsp31117I1117TI1935TnonsynaTcaCc51151116068-6070
ORF1ab/nsp31117I1117SI1935SnonsynaTcaGc98950.9693886068-6070
ORF1ab/nsp31117I1117SI1935SnonsynaTCaGT9830.03061226068-6070
ORF1ab/nsp31117I1117delI1935deldelATC---696916068-6070
ORF1ab/nsp31117I1117NI1935NnonsynaTcaAc11100.9090916068-6070
ORF1ab/nsp31117I1117NI1935NnonsynaTCaAT1110.09090916068-6070
ORF1ab/nsp31117I1117LI1935LnonsynAtcCtc970.7777786068-6070
ORF1ab/nsp31117I1117LI1935LnonsynAtCCtT920.2222226068-6070
ORF1ab/nsp31117I1117FI1935FnonsynAtcTtc630.56068-6070
ORF1ab/nsp31117I1117FI1935FnonsynAtCTtT630.56068-6070
ORF1ab/nsp31117I1117RI1935RnonsynATCCGT420.56068-6070
ORF1ab/nsp31117I1117RI1935RnonsynATcCGc420.56068-6070
ORF1ab/nsp31117I1117MI1935MnonsynatCatG3316068-6070
ORF1ab/nsp31117I1117del1I1935del1delatCat-320.6666676068-6070
ORF1ab/nsp31117I1117AI1935AnonsynATCGCT320.6666676068-6070
ORF1ab/nsp31117I1117del1I1935del1delAtc-tc310.3333336068-6070
ORF1ab/nsp31117I1117AI1935AnonsynATcGCc310.3333336068-6070
ORF1ab/nsp31117I1117GI1935GnonsynATcGGc1116068-6070
ORF1ab/nsp31117I1117del2I1935del2delaTCa--1116068-6070

Details of the mutation no within lineages (LineageCodonProp is the proportion the codon is observed at, at this particular site, on each lineage):

ORFCodonNumMutRefCodonMutCodonCodonCountAACountLineageLineageCodonProp
ORF1ab/nsp31117I1117IatCatT90739204All0.001735
ORF1ab/nsp31117I1117IatCatA1319204All0.000025
ORF1ab/nsp31117I1117IatCatT14631531B.1.1.70.00131
ORF1ab/nsp31117I1117IatCatA681531B.1.1.70.000061
ORF1ab/nsp31117I1117IatCatT11251125B.1.3670.891442
ORF1ab/nsp31117I1117IatCatT10901092B.1.20.009598
ORF1ab/nsp31117I1117IatCatA21092B.1.20.000018
ORF1ab/nsp31117I1117IatCatT585591AY.40.000911
ORF1ab/nsp31117I1117IatCatA6591AY.40.000009
ORF1ab/nsp31117I1117VAtcGtc580581All0.000111
ORF1ab/nsp31117I1117VAtCGtT1581All0
ORF1ab/nsp31117I1117TaTcaCc511511All0.000098
ORF1ab/nsp31117I1117IatCatT474483B.1.617.20.001785
ORF1ab/nsp31117I1117IatCatA9483B.1.617.20.000034
ORF1ab/nsp31117I1117IatCatT392401AY.440.002386
ORF1ab/nsp31117I1117IatCatA9401AY.440.000055
ORF1ab/nsp31117I1117IatCatT270272B.1.1770.003555
ORF1ab/nsp31117I1117IatCatA2272B.1.1770.000026
ORF1ab/nsp31117I1117IatCatT241242AY.1030.001496
ORF1ab/nsp31117I1117IatCatA1242AY.1030.000006
ORF1ab/nsp31117I1117IatCatT233236AY.430.001032
ORF1ab/nsp31117I1117IatCatA3236AY.430.000013
ORF1ab/nsp31117I1117VAtcGtc183183AY.4.20.003969
ORF1ab/nsp31117I1117IatCatT177177B.1.2580.011779
ORF1ab/nsp31117I1117IatCatT171171B.1.177.120.025941
ORF1ab/nsp31117I1117IatCatT151151B.1.4290.003553
ORF1ab/nsp31117I1117TaTcaCc142142AY.40.000221
ORF1ab/nsp31117I1117IatCatT138138B.1.1.4340.0481
ORF1ab/nsp31117I1117IatCatT132136B.10.001209
ORF1ab/nsp31117I1117IatCatA4136B.10.000037
ORF1ab/nsp31117I1117IatCatT127127AY.30.001263
ORF1ab/nsp31117I1117IatCatT110110B.1.10.001996
ORF1ab/nsp31117I1117SaTcaGc9598All0.000018
ORF1ab/nsp31117I1117SaTCaGT398All0.000001
ORF1ab/nsp31117I1117IatCatT8892AY.250.000529
ORF1ab/nsp31117I1117IatCatA492AY.250.000024
ORF1ab/nsp31117I1117VAtcGtc8888AY.9.20.003232
ORF1ab/nsp31117I1117IatCatT8387P.10.001308
ORF1ab/nsp31117I1117IatCatA487P.10.000063
ORF1ab/nsp31117I1117IatCatT8585AY.60.003496
ORF1ab/nsp31117I1117IatCatT8384AY.99.20.007649
ORF1ab/nsp31117I1117IatCatA184AY.99.20.000092
ORF1ab/nsp31117I1117IatCatT7979B.1.6030.840426
ORF1ab/nsp31117I1117IatCatT7575B.1.5960.006535
ORF1ab/nsp31117I1117delATC---6969All0.000013
ORF1ab/nsp31117I1117IatCatT6666B.1.6020.431373
ORF1ab/nsp31117I1117IatCatT6263B.1.5260.001457
ORF1ab/nsp31117I1117IatCatA163B.1.5260.000024
ORF1ab/nsp31117I1117IatCatT5555AY.1020.001458
ORF1ab/nsp31117I1117TaTcaCc5454B.1.1.70.000048
ORF1ab/nsp31117I1117VAtcGtc4949B.1.1.70.000044
ORF1ab/nsp31117I1117IatCatT4747AY.50.000971
ORF1ab/nsp31117I1117IatCatT4547P.1.140.002151
ORF1ab/nsp31117I1117IatCatA247P.1.140.000096
ORF1ab/nsp31117I1117VAtcGtc4646B.1.1280.029225
ORF1ab/nsp31117I1117IatCatT4040B.1.1.5190.001588
ORF1ab/nsp31117I1117TaTcaCc3838AY.1210.005142
ORF1ab/nsp31117I1117TaTcaCc3737B.10.000339
ORF1ab/nsp31117I1117IatCatT3737B.1.466.20.014476
ORF1ab/nsp31117I1117SaTcaGc3636B.1.20.000317
ORF1ab/nsp31117I1117IatCatT3535AD.20.007664
ORF1ab/nsp31117I1117IatCatT3434B.1.258.170.003535
ORF1ab/nsp31117I1117IatCatT3032B.1.1600.000936
ORF1ab/nsp31117I1117IatCatA232B.1.1600.000062
ORF1ab/nsp31117I1117IatCatT3131B.1.177.540.018799
ORF1ab/nsp31117I1117IatCatT3030AY.46.40.004935
ORF1ab/nsp31117I1117IatCatT2929B.1.1.1890.043873
ORF1ab/nsp31117I1117TaTcaCc2929B.1.617.20.000109
ORF1ab/nsp31117I1117VAtcGtc2828B.1.3510.000832
ORF1ab/nsp31117I1117IatCatT2727AY.390.000667
ORF1ab/nsp31117I1117TaTcaCc2727AY.7.10.003043
ORF1ab/nsp31117I1117TaTcaCc2626B.1.20.000229
ORF1ab/nsp31117I1117IatCatT2626B.1.2430.001809
ORF1ab/nsp31117I1117IatCatT2626B.1.438.10.002789
ORF1ab/nsp31117I1117VAtcGtc2424AY.40.000037
ORF1ab/nsp31117I1117TaTcaCc2323AY.5.40.006364
ORF1ab/nsp31117I1117IatCatT2122AY.260.000595
ORF1ab/nsp31117I1117IatCatA122AY.260.000028
ORF1ab/nsp31117I1117IatCatT2222AY.290.000347
ORF1ab/nsp31117I1117delATC---2222B.1.1.70.00002
ORF1ab/nsp31117I1117IatCatT2121B.1.2210.001492
ORF1ab/nsp31117I1117IatCatT2020AY.360.002964
ORF1ab/nsp31117I1117IatCatT2020B.1.360.002918
ORF1ab/nsp31117I1117IatCatT2020B.1.619.10.012829
ORF1ab/nsp31117I1117VAtcGtc1919B.1.20.000167
ORF1ab/nsp31117I1117SaTcaGc1919B.1.36.10.021665
ORF1ab/nsp31117I1117IatCatT1818A.20.011913
ORF1ab/nsp31117I1117IatCatT1818AY.4.20.00039
ORF1ab/nsp31117I1117IatCatT1818AY.840.007874
ORF1ab/nsp31117I1117IatCatT1717AY.10.006727
ORF1ab/nsp31117I1117IatCatT1717AY.610.001781
ORF1ab/nsp31117I1117IatCatT1616AH.30.060837
ORF1ab/nsp31117I1117IatCatT1616AY.320.00852
ORF1ab/nsp31117I1117IatCatT1616B.1.1.700.005457
ORF1ab/nsp31117I1117IatCatT1616B.1.3510.000476
ORF1ab/nsp31117I1117VAtcGtc1515B.1.617.20.000056
ORF1ab/nsp31117I1117IatCatT1414AY.1190.000494
ORF1ab/nsp31117I1117IatCatT1414AY.460.001457
ORF1ab/nsp31117I1117VAtcGtc1414B.1.5950.003653
ORF1ab/nsp31117I1117IatCatT1313AY.1200.000483
ORF1ab/nsp31117I1117IatCatT1113AY.200.000428
ORF1ab/nsp31117I1117IatCatA213AY.200.000078
ORF1ab/nsp31117I1117SaTcaGc1313B.1.1.70.000012
ORF1ab/nsp31117I1117IatCatT1313B.400.004736
ORF1ab/nsp31117I1117IatCatT1212AY.1000.000552
ORF1ab/nsp31117I1117IatCatT1212AY.1180.000752
ORF1ab/nsp31117I1117IatCatT1212B.1.1.3180.003621
ORF1ab/nsp31117I1117TaTcaCc1212B.1.5260.000282
ORF1ab/nsp31117I1117NaTcaAc1011All0.000002
ORF1ab/nsp31117I1117NaTCaAT111All0
ORF1ab/nsp31117I1117IatCatT1111B.1.2320.005911
ORF1ab/nsp31117I1117IatCatT1111B.1.4270.000555
ORF1ab/nsp31117I1117IatCatT1111B.1.6210.000974
ORF1ab/nsp31117I1117IatCatT1111C.370.001277
ORF1ab/nsp31117I1117IatCatT910AY.230.000628
ORF1ab/nsp31117I1117IatCatA110AY.230.00007
ORF1ab/nsp31117I1117IatCatT1010AY.420.000402
ORF1ab/nsp31117I1117IatCatT1010AY.450.001217
ORF1ab/nsp31117I1117VAtcGtc1010AY.690.001867
ORF1ab/nsp31117I1117IatCatT1010B0.001278
ORF1ab/nsp31117I1117SaTcaGc1010B.1.1.10.003267
ORF1ab/nsp31117I1117IatCatT1010B.1.1.2080.121951
ORF1ab/nsp31117I1117IatCatT1010B.1.4090.007812
ORF1ab/nsp31117I1117VAtcGtc1010B.1.5260.000235
ORF1ab/nsp31117I1117IatCatT1010B.1.6200.009461
ORF1ab/nsp31117I1117LAtcCtc79All0.000001
ORF1ab/nsp31117I1117LAtCCtT29All0
ORF1ab/nsp31117I1117IatCatT99AY.1050.005788
ORF1ab/nsp31117I1117IatCatT99AY.1130.001282
ORF1ab/nsp31117I1117IatCatT99AY.3.10.000767
ORF1ab/nsp31117I1117IatCatT99AY.39.10.000357
ORF1ab/nsp31117I1117VAtcGtc89AY.440.000049
ORF1ab/nsp31117I1117VAtCGtT19AY.440.000006
ORF1ab/nsp31117I1117IatCatT99B.1.1.3060.003946
ORF1ab/nsp31117I1117IatCatT99B.1.1280.005718
ORF1ab/nsp31117I1117IatCatT99P.20.00168
ORF1ab/nsp31117I1117IatCatT88AY.140.000704
ORF1ab/nsp31117I1117TaTcaCc88AY.260.000226
ORF1ab/nsp31117I1117IatCatT88AY.330.000534
ORF1ab/nsp31117I1117TaTcaCc88AY.50.000165
ORF1ab/nsp31117I1117IatCatT88AY.9.20.000294
ORF1ab/nsp31117I1117IatCatT88B.1.5820.003925
ORF1ab/nsp31117I1117IatCatT88B.1.617.10.001032
ORF1ab/nsp31117I1117IatCatT88C.260.058824
ORF1ab/nsp31117I1117TaTcaCc88P.1.140.000382
ORF1ab/nsp31117I1117IatCatT88P.1.170.001294
ORF1ab/nsp31117I1117VAtcGtc77AY.250.000042
ORF1ab/nsp31117I1117IatCatT77AY.46.20.004447
ORF1ab/nsp31117I1117VAtcGtc77B.1.160.150.034653
ORF1ab/nsp31117I1117TaTcaCc77Q.10.000884
ORF1ab/nsp31117I1117IatCatT77Q.80.001154
ORF1ab/nsp31117I1117FAtcTtc36All0.000001
ORF1ab/nsp31117I1117FAtCTtT36All0.000001
ORF1ab/nsp31117I1117VAtcGtc66AY.460.000624
ORF1ab/nsp31117I1117IatCatT66AY.46.50.00119
ORF1ab/nsp31117I1117IatCatT66AY.590.003178
ORF1ab/nsp31117I1117IatCatT66AY.950.004566
ORF1ab/nsp31117I1117IatCatT66AY.980.000474
ORF1ab/nsp31117I1117IatCatT66AY.98.10.000291
ORF1ab/nsp31117I1117VAtcGtc66B.10.000055
ORF1ab/nsp31117I1117IatCatT66B.1.1.270.033898
ORF1ab/nsp31117I1117IatCatT66B.1.1.330.002525
ORF1ab/nsp31117I1117IatCatT66B.1.177.210.000459
ORF1ab/nsp31117I1117IatCatT66B.1.177.440.003114
ORF1ab/nsp31117I1117IatCatT66B.1.2400.001293
ORF1ab/nsp31117I1117IatCatT66B.1.6090.002876
ORF1ab/nsp31117I1117IatCatT66B.1.6280.002114
ORF1ab/nsp31117I1117IatCatT66D.20.00045
ORF1ab/nsp31117I1117IatCatT66P.1.100.001617
ORF1ab/nsp31117I1117IatCatT66Q.10.000758
ORF1ab/nsp31117I1117IatCatT450.222222
ORF1ab/nsp31117I1117IatCatA150.055556
ORF1ab/nsp31117I1117TaTcaCc55AY.1180.000313
ORF1ab/nsp31117I1117TaTcaCc55AY.380.002496
ORF1ab/nsp31117I1117NaTcaAc45AY.430.000018
ORF1ab/nsp31117I1117NaTCaAT15AY.430.000004
ORF1ab/nsp31117I1117IatCatT55AY.470.000156
ORF1ab/nsp31117I1117IatCatT55AY.690.000933
ORF1ab/nsp31117I1117IatCatT35AY.7.10.000338
ORF1ab/nsp31117I1117IatCatA25AY.7.10.000225
ORF1ab/nsp31117I1117IatCatT55AY.860.004149
ORF1ab/nsp31117I1117IatCatT55AY.90.000338
ORF1ab/nsp31117I1117IatCatT55B.1.1.2840.000537
ORF1ab/nsp31117I1117IatCatT55B.1.1.500.003394
ORF1ab/nsp31117I1117IatCatT55B.1.1.630.001929
ORF1ab/nsp31117I1117IatCatT55B.1.3290.003038
ORF1ab/nsp31117I1117IatCatT55B.1.36.80.005
ORF1ab/nsp31117I1117TaTcaCc55B.1.5580.022831
ORF1ab/nsp31117I1117IatCatT55B.1.6120.013263
ORF1ab/nsp31117I1117RATCCGT240.111111
ORF1ab/nsp31117I1117LAtCCtT240.111111
ORF1ab/nsp31117I1117RATcCGc240.111111
ORF1ab/nsp31117I1117SaTCaGT240.111111
ORF1ab/nsp31117I1117SaTcaGc240.111111
ORF1ab/nsp31117I1117LAtcCtc240.111111
ORF1ab/nsp31117I1117IatCatT44A0.001548
ORF1ab/nsp31117I1117RATcCGc24All0
ORF1ab/nsp31117I1117RATCCGT24All0
ORF1ab/nsp31117I1117TaTcaCc44AY.1020.000106
ORF1ab/nsp31117I1117IatCatT44AY.1070.001864
ORF1ab/nsp31117I1117IatCatT44AY.1170.000338
ORF1ab/nsp31117I1117VAtcGtc44AY.1180.000251
ORF1ab/nsp31117I1117IatCatT44AY.270.000259
ORF1ab/nsp31117I1117VAtcGtc44AY.350.000932
ORF1ab/nsp31117I1117delATC---44AY.430.000018
ORF1ab/nsp31117I1117TaTcaCc44AY.5.30.00135
ORF1ab/nsp31117I1117IatCatT44AY.75.10.000721
ORF1ab/nsp31117I1117VAtcGtc44AY.98.10.000194
ORF1ab/nsp31117I1117IatCatT44B.1.1.280.001245
ORF1ab/nsp31117I1117IatCatT44B.1.1.3170.001647
ORF1ab/nsp31117I1117TaTcaCc44B.1.1.5190.000159
ORF1ab/nsp31117I1117IatCatT44B.1.177.600.000874
ORF1ab/nsp31117I1117IatCatT44B.1.177.820.001909
ORF1ab/nsp31117I1117IatCatT44B.1.2340.000528
ORF1ab/nsp31117I1117IatCatT44B.1.36.360.002408
ORF1ab/nsp31117I1117IatCatT44B.1.4990.004202
ORF1ab/nsp31117I1117IatCatT34B.1.5750.00091
ORF1ab/nsp31117I1117IatCatA14B.1.5750.000303
ORF1ab/nsp31117I1117delATC---44B.1.617.20.000015
ORF1ab/nsp31117I1117IatCatT44C.350.003096
ORF1ab/nsp31117I1117IatCatT44R.10.00036
ORF1ab/nsp31117I1117TaTcaCc33A.2.50.001497
ORF1ab/nsp31117I1117MatCatG33All0.000001
ORF1ab/nsp31117I1117AATCGCT23All0
ORF1ab/nsp31117I1117del1atCat-23All0
ORF1ab/nsp31117I1117AATcGCc13All0
ORF1ab/nsp31117I1117del1Atc-tc13All0
ORF1ab/nsp31117I1117TaTcaCc33AY.1000.000138
ORF1ab/nsp31117I1117IatCatT33AY.1110.000549
ORF1ab/nsp31117I1117IatCatT33AY.120.10.000963
ORF1ab/nsp31117I1117IatCatT33AY.120.2.10.001495
ORF1ab/nsp31117I1117TaTcaCc33AY.30.00003
ORF1ab/nsp31117I1117IatCatT33AY.340.000291
ORF1ab/nsp31117I1117IatCatT33AY.4.10.002212
ORF1ab/nsp31117I1117SaTcaGc33AY.440.000018
ORF1ab/nsp31117I1117IatCatT33AY.5.20.007389
ORF1ab/nsp31117I1117IatCatT33AY.540.000286
ORF1ab/nsp31117I1117IatCatT33AY.740.000347
ORF1ab/nsp31117I1117IatCatT33AY.750.000168
ORF1ab/nsp31117I1117IatCatT33AY.80.001818
ORF1ab/nsp31117I1117IatCatT33AY.940.001328
ORF1ab/nsp31117I1117delATC---33B.10.000027
ORF1ab/nsp31117I1117delATC---33B.1.10.000054
ORF1ab/nsp31117I1117VAtcGtc33B.1.10.000054
ORF1ab/nsp31117I1117IatCatT33B.1.1.2160.002671
ORF1ab/nsp31117I1117TaTcaCc33B.1.1.2160.002671
ORF1ab/nsp31117I1117IatCatT33B.1.1.2940.003797
ORF1ab/nsp31117I1117VAtcGtc33B.1.1.330.001263
ORF1ab/nsp31117I1117IatCatT33B.1.1.3720.002066
ORF1ab/nsp31117I1117IatCatT33B.1.1.3890.018182
ORF1ab/nsp31117I1117TaTcaCc33B.1.1.470.016043
ORF1ab/nsp31117I1117TaTcaCc33B.1.1770.00004
ORF1ab/nsp31117I1117VAtcGtc33B.1.177.330.004934
ORF1ab/nsp31117I1117IatCatT33B.1.177.860.00055
ORF1ab/nsp31117I1117IatCatT33B.1.3620.004622
ORF1ab/nsp31117I1117IatCatT33B.1.4000.001287
ORF1ab/nsp31117I1117IatCatT33B.1.416.10.004687
ORF1ab/nsp31117I1117IatCatT33B.1.4530.009709
ORF1ab/nsp31117I1117IatCatT33B.1.4700.004213
ORF1ab/nsp31117I1117IatCatT33B.1.5650.002431
ORF1ab/nsp31117I1117IatCatT33C.110.031915
ORF1ab/nsp31117I1117TaTcaCc33P.10.000047
ORF1ab/nsp31117I1117IatCatT33P.1.60.005837
ORF1ab/nsp31117I1117AATCGCT220.111111
ORF1ab/nsp31117I1117VAtcGtc22A.2.50.000998
ORF1ab/nsp31117I1117IatCatT22AE.80.000978
ORF1ab/nsp31117I1117TaTcaCc22AY.1030.000012
ORF1ab/nsp31117I1117SaTcaGc12AY.1030.000006
ORF1ab/nsp31117I1117SaTCaGT12AY.1030.000006
ORF1ab/nsp31117I1117IatCatT22AY.1060.00067
ORF1ab/nsp31117I1117IatCatT22AY.1100.000225
ORF1ab/nsp31117I1117VAtcGtc22AY.140.000176
ORF1ab/nsp31117I1117IatCatT22AY.16.10.00094
ORF1ab/nsp31117I1117VAtcGtc22AY.200.000078
ORF1ab/nsp31117I1117IatCatT22AY.240.000862
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ORF1ab/nsp31117I1117VAtcGtc22AY.30.00002
ORF1ab/nsp31117I1117TaTcaCc22AY.3.10.000171
ORF1ab/nsp31117I1117VAtcGtc22AY.300.000791
ORF1ab/nsp31117I1117IatCatT22AY.4.40.000818
ORF1ab/nsp31117I1117IatCatT22AY.4.50.000215
ORF1ab/nsp31117I1117TaTcaCc22AY.440.000012
ORF1ab/nsp31117I1117TaTcaCc22AY.460.000208
ORF1ab/nsp31117I1117IatCatT22AY.46.60.000144
ORF1ab/nsp31117I1117IatCatT22AY.490.00639
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ORF1ab/nsp31117I1117IatCatT22AY.550.001835
ORF1ab/nsp31117I1117IatCatT22AY.560.00321
ORF1ab/nsp31117I1117IatCatA12AY.70.000196
ORF1ab/nsp31117I1117IatCatT12AY.70.000196
ORF1ab/nsp31117I1117VAtcGtc22AY.740.000231
ORF1ab/nsp31117I1117IatCatT22AY.870.001665
ORF1ab/nsp31117I1117VAtcGtc22AY.9.10.000167
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ORF1ab/nsp31117I1117IatCatT22AY.920.000575
ORF1ab/nsp31117I1117IatCatT22AY.970.003401
ORF1ab/nsp31117I1117TaTcaCc22AY.98.10.000097
ORF1ab/nsp31117I1117SaTcaGc22B.10.000018
ORF1ab/nsp31117I1117IatCatT22B.1.1.1350.00939
ORF1ab/nsp31117I1117IatCatT22B.1.1.1530.002191
ORF1ab/nsp31117I1117IatCatT22B.1.1.2320.00363
ORF1ab/nsp31117I1117VAtcGtc22B.1.1.2910.001485
ORF1ab/nsp31117I1117IatCatT22B.1.1.3250.051282
ORF1ab/nsp31117I1117IatCatT22B.1.1.3370.007194
ORF1ab/nsp31117I1117VAtcGtc22B.1.1.3480.001592
ORF1ab/nsp31117I1117MatCatG22B.1.1.70.000002
ORF1ab/nsp31117I1117VAtcGtc22B.1.1770.000026
ORF1ab/nsp31117I1117IatCatT22B.1.177.730.001133
ORF1ab/nsp31117I1117IatCatT22B.1.177.810.000379
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ORF1ab/nsp31117I1117IatCatT22B.1.258.110.000793
ORF1ab/nsp31117I1117IatCatT22B.1.3110.000549
ORF1ab/nsp31117I1117TaTcaCc22B.1.3510.000059
ORF1ab/nsp31117I1117IatCatT22B.1.351.20.000605
ORF1ab/nsp31117I1117SaTcaGc22B.1.360.000292
ORF1ab/nsp31117I1117IatCatT22B.1.36.190.018519
ORF1ab/nsp31117I1117IatCatT22B.1.4760.2
ORF1ab/nsp31117I1117IatCatT22B.1.5250.000226
ORF1ab/nsp31117I1117IatCatT22B.1.5460.007407
ORF1ab/nsp31117I1117IatCatT22B.1.5680.002222
ORF1ab/nsp31117I1117IatCatT22B.1.5950.000522
ORF1ab/nsp31117I1117VAtcGtc22B.290.007018
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ORF1ab/nsp31117I1117delATC---22P.10.000032
ORF1ab/nsp31117I1117IatCatT22P.1.150.000465
ORF1ab/nsp31117I1117IatCatT22P.70.008734
ORF1ab/nsp31117I1117TaTcaCc110.055556
ORF1ab/nsp31117I1117NaTcaAc110.055556
ORF1ab/nsp31117I1117IatCatA11A.10.000282
ORF1ab/nsp31117I1117NaTcaAc11A.20.000662
ORF1ab/nsp31117I1117NaTcaAc11A.2.40.003367
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ORF1ab/nsp31117I1117IatCatT11A.210.00277
ORF1ab/nsp31117I1117VAtcGtc11AD.20.000219
ORF1ab/nsp31117I1117del2aTCa--11All0
ORF1ab/nsp31117I1117GATcGGc11All0
ORF1ab/nsp31117I1117IatCatT11AU.30.00211
ORF1ab/nsp31117I1117IatCatT11AY.100.00053
ORF1ab/nsp31117I1117IatCatT11AY.1010.00049
ORF1ab/nsp31117I1117FAtCTtT11AY.1030.000006
ORF1ab/nsp31117I1117VAtcGtc11AY.1030.000006
ORF1ab/nsp31117I1117IatCatT11AY.1160.000287
ORF1ab/nsp31117I1117SaTcaGc11AY.120.10.000321
ORF1ab/nsp31117I1117VAtcGtc11AY.1210.000135
ORF1ab/nsp31117I1117IatCatT11AY.1210.000135
ORF1ab/nsp31117I1117IatCatT11AY.130.000161
ORF1ab/nsp31117I1117VAtcGtc11AY.16.10.00047
ORF1ab/nsp31117I1117TaTcaCc11AY.200.000039
ORF1ab/nsp31117I1117IatCatT11AY.210.001898
ORF1ab/nsp31117I1117TaTcaCc11AY.220.002092
ORF1ab/nsp31117I1117TaTcaCc11AY.250.000006
ORF1ab/nsp31117I1117TaTcaCc11AY.290.000016
ORF1ab/nsp31117I1117LAtcCtc11AY.29.10.000221
ORF1ab/nsp31117I1117IatCatT11AY.29.10.000221
ORF1ab/nsp31117I1117FAtCTtT11AY.30.00001
ORF1ab/nsp31117I1117IatCatT11AY.300.000396
ORF1ab/nsp31117I1117VAtcGtc11AY.330.000067
ORF1ab/nsp31117I1117IatCatT11AY.34.10.00051
ORF1ab/nsp31117I1117IatCatT11AY.370.000316
ORF1ab/nsp31117I1117IatCatT11AY.380.000499
ORF1ab/nsp31117I1117VAtcGtc11AY.390.000025
ORF1ab/nsp31117I1117TaTcaCc11AY.39.10.00004
ORF1ab/nsp31117I1117IatCatT11AY.39.20.001541
ORF1ab/nsp31117I1117delATC---11AY.40.000002
ORF1ab/nsp31117I1117TaTcaCc11AY.4.20.000022
ORF1ab/nsp31117I1117IatCatT11AY.4.2.10.000149
ORF1ab/nsp31117I1117delATC---11AY.4.50.000107
ORF1ab/nsp31117I1117IatCatT11AY.400.000964
ORF1ab/nsp31117I1117TaTcaCc11AY.430.000004
ORF1ab/nsp31117I1117del1atCat-11AY.430.000004
ORF1ab/nsp31117I1117FAtCTtT11AY.440.000006
ORF1ab/nsp31117I1117delATC---11AY.440.000006
ORF1ab/nsp31117I1117IatCatT11AY.46.10.001027
ORF1ab/nsp31117I1117IatCatT11AY.46.30.000934
ORF1ab/nsp31117I1117AATcGCc11AY.46.60.000072
ORF1ab/nsp31117I1117IatCatT11AY.480.000465
ORF1ab/nsp31117I1117IatCatT11AY.500.000799
ORF1ab/nsp31117I1117IatCatT11AY.530.000288
ORF1ab/nsp31117I1117TaTcaCc11AY.540.000095
ORF1ab/nsp31117I1117delATC---11AY.540.000095
ORF1ab/nsp31117I1117TaTcaCc11AY.590.00053
ORF1ab/nsp31117I1117TaTcaCc11AY.60.000041
ORF1ab/nsp31117I1117delATC---11AY.610.000105
ORF1ab/nsp31117I1117IatCatT11AY.620.000436
ORF1ab/nsp31117I1117delATC---11AY.660.00107
ORF1ab/nsp31117I1117GATcGGc11AY.670.000464
ORF1ab/nsp31117I1117delATC---11AY.720.001361
ORF1ab/nsp31117I1117IatCatT11AY.730.000665
ORF1ab/nsp31117I1117NaTcaAc11AY.740.000116
ORF1ab/nsp31117I1117VAtcGtc11AY.750.000056
ORF1ab/nsp31117I1117delATC---11AY.840.000437
ORF1ab/nsp31117I1117delATC---11AY.850.000427
ORF1ab/nsp31117I1117IatCatT11AY.9.10.000084
ORF1ab/nsp31117I1117SaTcaGc11AY.9.10.000084
ORF1ab/nsp31117I1117VAtcGtc11AY.9.2.10.001976
ORF1ab/nsp31117I1117del1atCat-11AY.950.000761
ORF1ab/nsp31117I1117TaTcaCc11AY.980.000079
ORF1ab/nsp31117I1117delATC---11AY.990.001049
ORF1ab/nsp31117I1117IatCatT11AZ.30.00152
ORF1ab/nsp31117I1117del1Atc-tc11B0.000128
ORF1ab/nsp31117I1117TaTcaCc11B.1.10.000018
ORF1ab/nsp31117I1117IatCatT11B.1.1.10.000327
ORF1ab/nsp31117I1117IatCatT11B.1.1.1170.009709
ORF1ab/nsp31117I1117IatCatT11B.1.1.1220.045455
ORF1ab/nsp31117I1117IatCatT11B.1.1.1370.0125
ORF1ab/nsp31117I1117VAtcGtc11B.1.1.1700.001247
ORF1ab/nsp31117I1117IatCatT11B.1.1.1810.004545
ORF1ab/nsp31117I1117IatCatT11B.1.1.1980.001468
ORF1ab/nsp31117I1117IatCatT11B.1.1.2140.000055
ORF1ab/nsp31117I1117TaTcaCc11B.1.1.2200.001859
ORF1ab/nsp31117I1117NaTcaAc11B.1.1.2300.009174
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ORF1ab/nsp31117I1117TaTcaCc11B.1.1.250.000569
ORF1ab/nsp31117I1117IatCatT11B.1.1.2650.003155
ORF1ab/nsp31117I1117FAtcTtc11B.1.1.2770.000759
ORF1ab/nsp31117I1117IatCatT11B.1.1.2770.000759
ORF1ab/nsp31117I1117IatCatT11B.1.1.2800.003086
ORF1ab/nsp31117I1117IatCatT11B.1.1.2850.006536
ORF1ab/nsp31117I1117IatCatT11B.1.1.3050.003861
ORF1ab/nsp31117I1117IatCatT11B.1.1.3150.008475
ORF1ab/nsp31117I1117TaTcaCc11B.1.1.3170.000412
ORF1ab/nsp31117I1117IatCatT11B.1.1.3290.003846
ORF1ab/nsp31117I1117VAtcGtc11B.1.1.3370.003597
ORF1ab/nsp31117I1117delATC---11B.1.1.3480.000796
ORF1ab/nsp31117I1117IatCatT11B.1.1.370.000193
ORF1ab/nsp31117I1117IatCatT11B.1.1.3980.003226
ORF1ab/nsp31117I1117delATC---11B.1.1.4090.002833
ORF1ab/nsp31117I1117IatCatT11B.1.1.4090.002833
ORF1ab/nsp31117I1117IatCatT11B.1.1.4180.022727
ORF1ab/nsp31117I1117IatCatT11B.1.1.4320.001266
ORF1ab/nsp31117I1117IatCatT11B.1.1.480.002874
ORF1ab/nsp31117I1117IatCatT11B.1.1.4870.005587
ORF1ab/nsp31117I1117IatCatT11B.1.1.510.001718
ORF1ab/nsp31117I1117IatCatT11B.1.1.5260.003546
ORF1ab/nsp31117I1117LAtcCtc11B.1.1.700.000341
ORF1ab/nsp31117I1117IatCatT11B.1.1110.001175
ORF1ab/nsp31117I1117IatCatT11B.1.1470.000756
ORF1ab/nsp31117I1117IatCatT11B.1.1570.002985
ORF1ab/nsp31117I1117delATC---11B.1.1600.000031
ORF1ab/nsp31117I1117TaTcaCc11B.1.1600.000031
ORF1ab/nsp31117I1117VAtcGtc11B.1.1600.000031
ORF1ab/nsp31117I1117LAtcCtc11B.1.1600.000031
ORF1ab/nsp31117I1117FAtcTtc11B.1.1600.000031
ORF1ab/nsp31117I1117FAtcTtc11B.1.160.260.002421
ORF1ab/nsp31117I1117IatCatT11B.1.160.70.002079
ORF1ab/nsp31117I1117IatCatT11B.1.160.80.001289
ORF1ab/nsp31117I1117IatCatT11B.1.1660.008475
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ORF1ab/nsp31117I1117IatCatT11B.1.177.150.000631
ORF1ab/nsp31117I1117IatCatT11B.1.177.180.00116
ORF1ab/nsp31117I1117IatCatT11B.1.177.230.003236
ORF1ab/nsp31117I1117TaTcaCc11B.1.177.320.00135
ORF1ab/nsp31117I1117TaTcaCc11B.1.177.50.001242
ORF1ab/nsp31117I1117delATC---11B.1.177.510.004566
ORF1ab/nsp31117I1117IatCatT11B.1.177.560.000668
ORF1ab/nsp31117I1117IatCatT11B.1.177.60.000977
ORF1ab/nsp31117I1117IatCatA11B.1.177.650.000665
ORF1ab/nsp31117I1117IatCatT11B.1.177.770.000726
ORF1ab/nsp31117I1117IatCatT11B.1.177.790.002342
ORF1ab/nsp31117I1117IatCatT11B.1.177.830.001481
ORF1ab/nsp31117I1117TaTcaCc11B.1.177.830.001481
ORF1ab/nsp31117I1117delATC---11B.1.20.000009
ORF1ab/nsp31117I1117IatCatT11B.1.2010.005682
ORF1ab/nsp31117I1117IatCatT11B.1.2060.000816
ORF1ab/nsp31117I1117IatCatT11B.1.2220.001692
ORF1ab/nsp31117I1117IatCatT11B.1.2390.001221
ORF1ab/nsp31117I1117TaTcaCc11B.1.2430.00007
ORF1ab/nsp31117I1117del2aTCa--11B.1.2470.014925
ORF1ab/nsp31117I1117LAtcCtc11B.1.2580.000067
ORF1ab/nsp31117I1117SaTcaGc11B.1.2580.000067
ORF1ab/nsp31117I1117IatCatT11B.1.2650.001271
ORF1ab/nsp31117I1117TaTcaCc11B.1.3110.000275
ORF1ab/nsp31117I1117IatCatT11B.1.3200.001245
ORF1ab/nsp31117I1117IatCatT11B.1.3320.003497
ORF1ab/nsp31117I1117IatCatT11B.1.3360.002439
ORF1ab/nsp31117I1117IatCatT11B.1.3400.004292
ORF1ab/nsp31117I1117IatCatT11B.1.3460.001311
ORF1ab/nsp31117I1117VAtcGtc11B.1.351.30.000876
ORF1ab/nsp31117I1117IatCatT11B.1.351.50.0006
ORF1ab/nsp31117I1117VAtcGtc11B.1.3550.011111
ORF1ab/nsp31117I1117IatCatT11B.1.36.220.001208
ORF1ab/nsp31117I1117IatCatT11B.1.36.260.002857
ORF1ab/nsp31117I1117IatCatT11B.1.36.290.000517
ORF1ab/nsp31117I1117IatCatT11B.1.36.310.001751
ORF1ab/nsp31117I1117IatCatT11B.1.36.350.002604
ORF1ab/nsp31117I1117IatCatT11B.1.3690.000285
ORF1ab/nsp31117I1117IatCatT11B.1.3960.000706
ORF1ab/nsp31117I1117IatCatA11B.1.4160.001269
ORF1ab/nsp31117I1117delATC---11B.1.416.10.001563
ORF1ab/nsp31117I1117VAtcGtc11B.1.416.10.001563
ORF1ab/nsp31117I1117IatCatT11B.1.4250.002994
ORF1ab/nsp31117I1117IatCatT11B.1.4260.001009
ORF1ab/nsp31117I1117VAtcGtc11B.1.4290.000024
ORF1ab/nsp31117I1117IatCatT11B.1.4320.011236
ORF1ab/nsp31117I1117IatCatT11B.1.4330.003195
ORF1ab/nsp31117I1117IatCatT11B.1.4560.003268
ORF1ab/nsp31117I1117IatCatT11B.1.4620.007246
ORF1ab/nsp31117I1117SaTcaGc11B.1.466.20.000391
ORF1ab/nsp31117I1117LAtcCtc11B.1.4700.001404
ORF1ab/nsp31117I1117IatCatT11B.1.5090.000866
ORF1ab/nsp31117I1117TaTcaCc11B.1.5170.000427
ORF1ab/nsp31117I1117delATC---11B.1.5260.000024
ORF1ab/nsp31117I1117TaTcaCc11B.1.5300.007143
ORF1ab/nsp31117I1117IatCatT11B.1.5380.008065
ORF1ab/nsp31117I1117IatCatT11B.1.5510.00129
ORF1ab/nsp31117I1117IatCatT11B.1.5740.002151
ORF1ab/nsp31117I1117IatCatT11B.1.5770.000687
ORF1ab/nsp31117I1117IatCatT11B.1.5850.027778
ORF1ab/nsp31117I1117IatCatT11B.1.5870.001898
ORF1ab/nsp31117I1117IatCatT11B.1.5880.00091
ORF1ab/nsp31117I1117TaTcaCc11B.1.5960.000087
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ORF1ab/nsp31117I1117IatCatT11B.1.5970.00463
ORF1ab/nsp31117I1117IatCatT11B.1.5990.00365
ORF1ab/nsp31117I1117TaTcaCc11B.1.6000.005848
ORF1ab/nsp31117I1117TaTcaCc11B.1.617.10.000129
ORF1ab/nsp31117I1117SaTcaGc11B.1.617.20.000004
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ORF1ab/nsp31117I1117IatCatT11B.1.6330.041667
ORF1ab/nsp31117I1117IatCatT11B.1.6370.000073
ORF1ab/nsp31117I1117SaTcaGc11B.1.6370.000073
ORF1ab/nsp31117I1117NaTcaAc11B.1.6370.000073
ORF1ab/nsp31117I1117delATC---11B.150.017544
ORF1ab/nsp31117I1117IatCatT11B.30.000831
ORF1ab/nsp31117I1117IatCatT11B.3.10.001658
ORF1ab/nsp31117I1117IatCatT11B.40.002208
ORF1ab/nsp31117I1117IatCatT11B.4.60.016667
ORF1ab/nsp31117I1117IatCatT11B.520.010101
ORF1ab/nsp31117I1117IatCatT11C.10.002392
ORF1ab/nsp31117I1117IatCatT11C.160.00106
ORF1ab/nsp31117I1117VAtcGtc11C.350.000774
ORF1ab/nsp31117I1117IatCatT11C.360.000911
ORF1ab/nsp31117I1117IatCatT11C.36.30.000567
ORF1ab/nsp31117I1117IatCatT11C.36.3.10.002717
ORF1ab/nsp31117I1117TaTcaCc11C.370.000116
ORF1ab/nsp31117I1117IatCatT11N.50.001767
ORF1ab/nsp31117I1117VAtcGtc11P.10.000016
ORF1ab/nsp31117I1117SaTcaGc11P.10.000016
ORF1ab/nsp31117I1117TaTcaCc11P.1.100.000269
ORF1ab/nsp31117I1117TaTcaCc11P.1.130.000898
ORF1ab/nsp31117I1117TaTcaCc11P.1.150.000232
ORF1ab/nsp31117I1117IatCatT11P.1.160.000374
ORF1ab/nsp31117I1117IatCatT11P.1.20.001156
ORF1ab/nsp31117I1117delATC---11Q.10.000126
ORF1ab/nsp31117I1117TaTcaCc11Q.30.000145
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ORF1ab/nsp31117I1117IatCatT11Q.40.000455
ORF1ab/nsp31117I1117MatCatG11R.10.00009