CoV-GLUE | Mutations | Mutation

CoV-GLUE Mutation: ORF = ORF1ab/nsp3 : CodonNum = 1115

Details of the codons used for the mutation across all lineages (CodonProp is the proportion each codon is used for this AA mutation):

ORFCodonNumMutORF1abMutMutTypeRefCodonMutCodonAACountCodonCountCodonPropGenome Position
ORF1ab/nsp31115D1115GD1933GnonsyngAtgGt5155130.9961176062-6064
ORF1ab/nsp31115D1115GD1933GnonsyngATgGC51510.001941756062-6064
ORF1ab/nsp31115D1115GD1933GnonsyngATgGG51510.001941756062-6064
ORF1ab/nsp31115D1115ND1933NnonsynGatAat3673630.9891016062-6064
ORF1ab/nsp31115D1115ND1933NnonsynGaTAaC36740.01089926062-6064
ORF1ab/nsp31115D1115DD1933DsyngaTgaC18618616062-6064
ORF1ab/nsp31115D1115AD1933AnonsyngAtgCt17717716062-6064
ORF1ab/nsp31115D1115delD1933deldelGAT---737316062-6064
ORF1ab/nsp31115D1115YD1933YnonsynGatTat32300.93756062-6064
ORF1ab/nsp31115D1115YD1933YnonsynGaTTaC3220.06256062-6064
ORF1ab/nsp31115D1115VD1933VnonsyngAtgTt27250.9259266062-6064
ORF1ab/nsp31115D1115VD1933VnonsyngATgTG2720.07407416062-6064
ORF1ab/nsp31115D1115ED1933EnonsyngaTgaA13110.8461546062-6064
ORF1ab/nsp31115D1115ED1933EnonsyngaTgaG1320.1538466062-6064
ORF1ab/nsp31115D1115HD1933HnonsynGatCat9916062-6064
ORF1ab/nsp31115D1115del1D1933del1delgaTga-750.7142866062-6064
ORF1ab/nsp31115D1115del1D1933del1delGat-at720.2857146062-6064
ORF1ab/nsp31115D1115del2D1933del2delgATg--430.756062-6064
ORF1ab/nsp31115D1115del2D1933del2delGAT--N410.256062-6064
ORF1ab/nsp31115D1115XD1933XnonsynGaTTaA1116062-6064
ORF1ab/nsp31115D1115ID1933InonsynGAtATt1116062-6064
ORF1ab/nsp31115D1115TD1933TnonsynGAtACt1116062-6064

Details of the mutation no within lineages (LineageCodonProp is the proportion the codon is observed at, at this particular site, on each lineage):

ORFCodonNumMutRefCodonMutCodonCodonCountAACountLineageLineageCodonProp
ORF1ab/nsp31115D1115GgAtgGt513515All0.000098
ORF1ab/nsp31115D1115GgATgGG1515All0
ORF1ab/nsp31115D1115GgATgGC1515All0
ORF1ab/nsp31115D1115NGatAat363367All0.000069
ORF1ab/nsp31115D1115NGaTAaC4367All0.000001
ORF1ab/nsp31115D1115NGatAat299299AY.30.002974
ORF1ab/nsp31115D1115DgaTgaC186186All0.000036
ORF1ab/nsp31115D1115AgAtgCt177177All0.000034
ORF1ab/nsp31115D1115AgAtgCt105105B.1.177.270.990566
ORF1ab/nsp31115D1115GgAtgGt103103B.1.1.70.000092
ORF1ab/nsp31115D1115delGAT---7373All0.000014
ORF1ab/nsp31115D1115DgaTgaC5959B.1.1.70.000053
ORF1ab/nsp31115D1115GgAtgGt4646AY.440.00028
ORF1ab/nsp31115D1115GgAtgGt4040AY.40.000062
ORF1ab/nsp31115D1115YGatTat3032All0.000006
ORF1ab/nsp31115D1115YGaTTaC232All0
ORF1ab/nsp31115D1115GgAtgGt3030B.1.20.000264
ORF1ab/nsp31115D1115GgAtgGt2929AY.1030.00018
ORF1ab/nsp31115D1115VgAtgTt2527All0.000005
ORF1ab/nsp31115D1115VgATgTG227All0
ORF1ab/nsp31115D1115GgAtgGt2525AY.250.00015
ORF1ab/nsp31115D1115delGAT---2424B.1.1.70.000021
ORF1ab/nsp31115D1115GgAtgGt2424B.1.5320.149068
ORF1ab/nsp31115D1115GgAtgGt2323B.1.177.120.003489
ORF1ab/nsp31115D1115AgAtgCt2020B.1.1770.000263
ORF1ab/nsp31115D1115GgAtgGt1919AY.260.000538
ORF1ab/nsp31115D1115DgaTgaC1818B.1.3510.000535
ORF1ab/nsp31115D1115NGatAat1616AY.250.000096
ORF1ab/nsp31115D1115GgAtgGt1616B.1.617.20.00006
ORF1ab/nsp31115D1115VgAtgTt1616B.1.617.20.00006
ORF1ab/nsp31115D1115AgAtgCt1515B.1.1.70.000013
ORF1ab/nsp31115D1115DgaTgaC1414AY.46.40.002303
ORF1ab/nsp31115D1115GgAtgGt1414B.10.000128
ORF1ab/nsp31115D1115EgaTgaA1113All0.000002
ORF1ab/nsp31115D1115EgaTgaG213All0
ORF1ab/nsp31115D1115DgaTgaC1111AY.40.000017
ORF1ab/nsp31115D1115NGatAat1010B.1.1.70.000009
ORF1ab/nsp31115D1115AgAtgCt1010B.1.5260.000235
ORF1ab/nsp31115D1115HGatCat99All0.000002
ORF1ab/nsp31115D1115GgAtgGt99AY.620.003922
ORF1ab/nsp31115D1115GgAtgGt99B.1.1770.000119
ORF1ab/nsp31115D1115GgAtgGt99B.1.2140.032967
ORF1ab/nsp31115D1115DgaTgaC99P.10.000142
ORF1ab/nsp31115D1115del1gaTga-57All0.000001
ORF1ab/nsp31115D1115del1Gat-at27All0
ORF1ab/nsp31115D1115GgAtgGt77AY.30.00007
ORF1ab/nsp31115D1115AgAtgCt66AY.40.000009
ORF1ab/nsp31115D1115GgAtgGt66AY.430.000027
ORF1ab/nsp31115D1115GgAtgGt66B.1.1570.01791
ORF1ab/nsp31115D1115DgaTgaC66B.1.3490.004289
ORF1ab/nsp31115D1115GgAtgGt66B.1.3510.000178
ORF1ab/nsp31115D1115DgaTgaC55A.23.10.003521
ORF1ab/nsp31115D1115DgaTgaC55AY.1000.00023
ORF1ab/nsp31115D1115GgAtgGt55AY.1020.000133
ORF1ab/nsp31115D1115DgaTgaC55AY.440.00003
ORF1ab/nsp31115D1115NGatAat55AY.50.000103
ORF1ab/nsp31115D1115DgaTgaC55B.10.000046
ORF1ab/nsp31115D1115GgAtgGt55B.1.1.250.002843
ORF1ab/nsp31115D1115GgAtgGt55B.1.360.00073
ORF1ab/nsp31115D1115NGaTAaC440.222222
ORF1ab/nsp31115D1115GgAtgGt44A0.001548
ORF1ab/nsp31115D1115del2gATg--34All0.000001
ORF1ab/nsp31115D1115del2GAT--N14All0
ORF1ab/nsp31115D1115DgaTgaC44AY.430.000018
ORF1ab/nsp31115D1115delGAT---44B.1.617.20.000015
ORF1ab/nsp31115D1115NGatAat44B.1.617.20.000015
ORF1ab/nsp31115D1115DgaTgaC33AY.1030.000019
ORF1ab/nsp31115D1115NGatAat33AY.1030.000019
ORF1ab/nsp31115D1115NGatAat33AY.1190.000106
ORF1ab/nsp31115D1115delGAT---33AY.250.000018
ORF1ab/nsp31115D1115GgAtgGt33AY.290.000047
ORF1ab/nsp31115D1115delGAT---33AY.430.000013
ORF1ab/nsp31115D1115YGatTat33AY.440.000018
ORF1ab/nsp31115D1115GgAtgGt33AY.830.005172
ORF1ab/nsp31115D1115VgAtgTt33AY.980.000237
ORF1ab/nsp31115D1115GgAtgGt33B0.000383
ORF1ab/nsp31115D1115delGAT---33B.10.000027
ORF1ab/nsp31115D1115NGatAat33B.1.10.000054
ORF1ab/nsp31115D1115delGAT---33B.1.10.000054
ORF1ab/nsp31115D1115YGatTat33B.1.1.70.000003
ORF1ab/nsp31115D1115DgaTgaC33B.1.20.000026
ORF1ab/nsp31115D1115AgAtgCt33B.1.20.000026
ORF1ab/nsp31115D1115AgAtgCt33B.1.4290.000071
ORF1ab/nsp31115D1115GgAtgGt33B.1.4290.000071
ORF1ab/nsp31115D1115NGatAat33B.1.4290.000071
ORF1ab/nsp31115D1115GgAtgGt33B.1.617.10.000387
ORF1ab/nsp31115D1115YGatTat33B.1.617.20.000011
ORF1ab/nsp31115D1115DgaTgaC33B.1.617.20.000011
ORF1ab/nsp31115D1115GgAtgGt33P.1.70.000958
ORF1ab/nsp31115D1115DgaTgaC33Q.30.000435
ORF1ab/nsp31115D1115HGatCat220.111111
ORF1ab/nsp31115D1115YGaTTaC220.111111
ORF1ab/nsp31115D1115VgAtgTt12AY.1130.000142
ORF1ab/nsp31115D1115GgAtgGt12AY.1130.000142
ORF1ab/nsp31115D1115GgATgGG12AY.1130.000142
ORF1ab/nsp31115D1115VgATgTG12AY.1130.000142
ORF1ab/nsp31115D1115GgAtgGt22AY.116.10.000623
ORF1ab/nsp31115D1115DgaTgaC22AY.1170.000169
ORF1ab/nsp31115D1115YGatTat22AY.30.00002
ORF1ab/nsp31115D1115VgATgTG12AY.30.00001
ORF1ab/nsp31115D1115VgAtgTt12AY.30.00001
ORF1ab/nsp31115D1115GgAtgGt22AY.360.000296
ORF1ab/nsp31115D1115NGatAat22AY.40.000003
ORF1ab/nsp31115D1115YGatTat22AY.40.000003
ORF1ab/nsp31115D1115delGAT---22AY.4.50.000215
ORF1ab/nsp31115D1115AgAtgCt22AY.440.000012
ORF1ab/nsp31115D1115DgaTgaC22AY.450.000243
ORF1ab/nsp31115D1115del1gaTga-22AY.530.000575
ORF1ab/nsp31115D1115AgAtgCt22AY.99.20.000184
ORF1ab/nsp31115D1115YGatTat22B.10.000018
ORF1ab/nsp31115D1115GgAtgGt22B.1.10.000036
ORF1ab/nsp31115D1115AgAtgCt22B.1.10.000036
ORF1ab/nsp31115D1115YGatTat22B.1.10.000036
ORF1ab/nsp31115D1115GgAtgGt22B.1.1.3260.003521
ORF1ab/nsp31115D1115del2gATg--12B.1.1.70.000001
ORF1ab/nsp31115D1115del2GAT--N12B.1.1.70.000001
ORF1ab/nsp31115D1115GgAtgGt22B.1.1600.000062
ORF1ab/nsp31115D1115NGatAat22B.1.1770.000026
ORF1ab/nsp31115D1115delGAT---22B.1.2580.000133
ORF1ab/nsp31115D1115GgAtgGt12B.1.2580.000067
ORF1ab/nsp31115D1115GgATgGC12B.1.2580.000067
ORF1ab/nsp31115D1115delGAT---22B.1.3510.000059
ORF1ab/nsp31115D1115NGatAat22B.1.4270.000101
ORF1ab/nsp31115D1115GgAtgGt22B.1.5370.04
ORF1ab/nsp31115D1115AgAtgCt22B.1.617.20.000008
ORF1ab/nsp31115D1115delGAT---22C.370.000232
ORF1ab/nsp31115D1115delGAT---22P.10.000032
ORF1ab/nsp31115D1115GgAtgGt22P.10.000032
ORF1ab/nsp31115D1115HGatCat22P.1.10.000635
ORF1ab/nsp31115D1115GgAtgGt22P.1.140.000096
ORF1ab/nsp31115D1115GgAtgGt22Q.10.000253
ORF1ab/nsp31115D1115EgaTgaA110.055556
ORF1ab/nsp31115D1115DgaTgaC110.055556
ORF1ab/nsp31115D1115DgaTgaC11A0.000387
ORF1ab/nsp31115D1115GgAtgGt11A.20.000662
ORF1ab/nsp31115D1115DgaTgaC11A.2.40.003367
ORF1ab/nsp31115D1115DgaTgaC11A.50.001923
ORF1ab/nsp31115D1115TGAtACt11All0
ORF1ab/nsp31115D1115IGAtATt11All0
ORF1ab/nsp31115D1115XGaTTaA11All0
ORF1ab/nsp31115D1115GgAtgGt11AY.1000.000046
ORF1ab/nsp31115D1115DgaTgaC11AY.1020.000027
ORF1ab/nsp31115D1115NGatAat11AY.1020.000027
ORF1ab/nsp31115D1115delGAT---11AY.1030.000006
ORF1ab/nsp31115D1115DgaTgaC11AY.1090.00074
ORF1ab/nsp31115D1115EgaTgaG11AY.1130.000142
ORF1ab/nsp31115D1115AgAtgCt11AY.116.10.000311
ORF1ab/nsp31115D1115GgAtgGt11AY.1170.000085
ORF1ab/nsp31115D1115GgAtgGt11AY.1210.000135
ORF1ab/nsp31115D1115GgAtgGt11AY.200.000039
ORF1ab/nsp31115D1115DgaTgaC11AY.23.10.000417
ORF1ab/nsp31115D1115EgaTgaA11AY.240.000431
ORF1ab/nsp31115D1115YGatTat11AY.250.000006
ORF1ab/nsp31115D1115NGatAat11AY.290.000016
ORF1ab/nsp31115D1115DgaTgaC11AY.290.000016
ORF1ab/nsp31115D1115AgAtgCt11AY.29.10.000221
ORF1ab/nsp31115D1115DgaTgaC11AY.30.00001
ORF1ab/nsp31115D1115GgAtgGt11AY.3.10.000085
ORF1ab/nsp31115D1115NGatAat11AY.320.000532
ORF1ab/nsp31115D1115DgaTgaC11AY.330.000067
ORF1ab/nsp31115D1115EgaTgaA11AY.390.000025
ORF1ab/nsp31115D1115DgaTgaC11AY.390.000025
ORF1ab/nsp31115D1115VgAtgTt11AY.40.000002
ORF1ab/nsp31115D1115delGAT---11AY.40.000002
ORF1ab/nsp31115D1115HGatCat11AY.40.000002
ORF1ab/nsp31115D1115del2gATg--11AY.40.000002
ORF1ab/nsp31115D1115GgAtgGt11AY.4.20.000022
ORF1ab/nsp31115D1115GgAtgGt11AY.410.000294
ORF1ab/nsp31115D1115NGatAat11AY.420.00004
ORF1ab/nsp31115D1115AgAtgCt11AY.430.000004
ORF1ab/nsp31115D1115YGatTat11AY.430.000004
ORF1ab/nsp31115D1115VgAtgTt11AY.430.000004
ORF1ab/nsp31115D1115NGatAat11AY.440.000006
ORF1ab/nsp31115D1115IGAtATt11AY.440.000006
ORF1ab/nsp31115D1115TGAtACt11AY.440.000006
ORF1ab/nsp31115D1115EgaTgaA11AY.440.000006
ORF1ab/nsp31115D1115delGAT---11AY.440.000006
ORF1ab/nsp31115D1115YGatTat11AY.450.000122
ORF1ab/nsp31115D1115DgaTgaC11AY.460.000104
ORF1ab/nsp31115D1115DgaTgaC11AY.46.60.000072
ORF1ab/nsp31115D1115NGatAat11AY.470.000031
ORF1ab/nsp31115D1115YGatTat11AY.50.000021
ORF1ab/nsp31115D1115delGAT---11AY.520.000814
ORF1ab/nsp31115D1115GgAtgGt11AY.530.000288
ORF1ab/nsp31115D1115delGAT---11AY.540.000095
ORF1ab/nsp31115D1115delGAT---11AY.610.000105
ORF1ab/nsp31115D1115delGAT---11AY.660.00107
ORF1ab/nsp31115D1115EgaTgaA11AY.670.000464
ORF1ab/nsp31115D1115GgAtgGt11AY.680.000274
ORF1ab/nsp31115D1115EgaTgaA11AY.690.000187
ORF1ab/nsp31115D1115YGatTat11AY.70.000196
ORF1ab/nsp31115D1115delGAT---11AY.710.000475
ORF1ab/nsp31115D1115delGAT---11AY.720.001361
ORF1ab/nsp31115D1115DgaTgaC11AY.740.000116
ORF1ab/nsp31115D1115delGAT---11AY.840.000437
ORF1ab/nsp31115D1115NGatAat11AY.840.000437
ORF1ab/nsp31115D1115delGAT---11AY.850.000427
ORF1ab/nsp31115D1115GgAtgGt11AY.860.00083
ORF1ab/nsp31115D1115DgaTgaC11AY.870.000833
ORF1ab/nsp31115D1115delGAT---11AY.9.20.000037
ORF1ab/nsp31115D1115DgaTgaC11AY.9.20.000037
ORF1ab/nsp31115D1115del1gaTga-11AY.9.20.000037
ORF1ab/nsp31115D1115NGatAat11AY.930.000273
ORF1ab/nsp31115D1115delGAT---11AY.990.001049
ORF1ab/nsp31115D1115VgAtgTt11B.10.000009
ORF1ab/nsp31115D1115AgAtgCt11B.10.000009
ORF1ab/nsp31115D1115EgaTgaA11B.10.000009
ORF1ab/nsp31115D1115NGatAat11B.10.000009
ORF1ab/nsp31115D1115EgaTgaA11B.1.10.000018
ORF1ab/nsp31115D1115YGatTat11B.1.1.1570.000913
ORF1ab/nsp31115D1115DgaTgaC11B.1.1.2140.000055
ORF1ab/nsp31115D1115GgAtgGt11B.1.1.2160.00089
ORF1ab/nsp31115D1115AgAtgCt11B.1.1.2200.001859
ORF1ab/nsp31115D1115VgAtgTt11B.1.1.2210.010101
ORF1ab/nsp31115D1115del2gATg--11B.1.1.2360.006897
ORF1ab/nsp31115D1115GgAtgGt11B.1.1.2400.004695
ORF1ab/nsp31115D1115GgAtgGt11B.1.1.3370.003597
ORF1ab/nsp31115D1115delGAT---11B.1.1.3480.000796
ORF1ab/nsp31115D1115NGatAat11B.1.1.370.000193
ORF1ab/nsp31115D1115DgaTgaC11B.1.1.390.00051
ORF1ab/nsp31115D1115GgAtgGt11B.1.1.4090.002833
ORF1ab/nsp31115D1115delGAT---11B.1.1.4090.002833
ORF1ab/nsp31115D1115NGatAat11B.1.1.4320.001266
ORF1ab/nsp31115D1115GgAtgGt11B.1.1.4320.001266
ORF1ab/nsp31115D1115AgAtgCt11B.1.1.4340.000349
ORF1ab/nsp31115D1115DgaTgaC11B.1.1.5260.003546
ORF1ab/nsp31115D1115HGatCat11B.1.1.70.000001
ORF1ab/nsp31115D1115delGAT---11B.1.1600.000031
ORF1ab/nsp31115D1115DgaTgaC11B.1.160.160.000929
ORF1ab/nsp31115D1115YGatTat11B.1.160.320.004292
ORF1ab/nsp31115D1115GgAtgGt11B.1.160.70.002079
ORF1ab/nsp31115D1115delGAT---11B.1.1770.000013
ORF1ab/nsp31115D1115delGAT---11B.1.177.510.004566
ORF1ab/nsp31115D1115GgAtgGt11B.1.177.820.000477
ORF1ab/nsp31115D1115GgAtgGt11B.1.1800.05
ORF1ab/nsp31115D1115YGatTat11B.1.20.000009
ORF1ab/nsp31115D1115delGAT---11B.1.20.000009
ORF1ab/nsp31115D1115del1Gat-at11B.1.20.000009
ORF1ab/nsp31115D1115DgaTgaC11B.1.2210.000071
ORF1ab/nsp31115D1115YGatTat11B.1.258.110.000396
ORF1ab/nsp31115D1115GgAtgGt11B.1.2600.003344
ORF1ab/nsp31115D1115GgAtgGt11B.1.30.002618
ORF1ab/nsp31115D1115EgaTgaA11B.1.3110.000275
ORF1ab/nsp31115D1115YGatTat11B.1.36.170.000494
ORF1ab/nsp31115D1115DgaTgaC11B.1.36.290.000517
ORF1ab/nsp31115D1115GgAtgGt11B.1.3690.000285
ORF1ab/nsp31115D1115YGatTat11B.1.4000.000429
ORF1ab/nsp31115D1115DgaTgaC11B.1.4160.001269
ORF1ab/nsp31115D1115delGAT---11B.1.416.10.001563
ORF1ab/nsp31115D1115GgAtgGt11B.1.4280.00102
ORF1ab/nsp31115D1115EgaTgaA11B.1.4290.000024
ORF1ab/nsp31115D1115YGatTat11B.1.4320.011236
ORF1ab/nsp31115D1115DgaTgaC11B.1.4360.001029
ORF1ab/nsp31115D1115YGatTat11B.1.4590.004082
ORF1ab/nsp31115D1115GgAtgGt11B.1.4970.000315
ORF1ab/nsp31115D1115DgaTgaC11B.1.4990.00105
ORF1ab/nsp31115D1115GgAtgGt11B.1.5090.000866
ORF1ab/nsp31115D1115DgaTgaC11B.1.5250.000113
ORF1ab/nsp31115D1115delGAT---11B.1.5260.000024
ORF1ab/nsp31115D1115HGatCat11B.1.5260.000024
ORF1ab/nsp31115D1115GgAtgGt11B.1.5260.000024
ORF1ab/nsp31115D1115del1gaTga-11B.1.5260.000024
ORF1ab/nsp31115D1115GgAtgGt11B.1.5610.000397
ORF1ab/nsp31115D1115DgaTgaC11B.1.5640.000426
ORF1ab/nsp31115D1115GgAtgGt11B.1.5950.000261
ORF1ab/nsp31115D1115del1gaTga-11B.1.5960.000087
ORF1ab/nsp31115D1115GgAtgGt11B.1.6090.000479
ORF1ab/nsp31115D1115GgAtgGt11B.1.619.10.000641
ORF1ab/nsp31115D1115EgaTgaG11B.1.619.10.000641
ORF1ab/nsp31115D1115GgAtgGt11B.1.6210.000089
ORF1ab/nsp31115D1115GgAtgGt11B.1.6370.000073
ORF1ab/nsp31115D1115HGatCat11B.1.9.40.006135
ORF1ab/nsp31115D1115delGAT---11B.150.017544
ORF1ab/nsp31115D1115HGatCat11B.400.000364
ORF1ab/nsp31115D1115XGaTTaA11C.350.000774
ORF1ab/nsp31115D1115EgaTgaA11D.20.000075
ORF1ab/nsp31115D1115del1Gat-at11P.1.10.000318
ORF1ab/nsp31115D1115DgaTgaC11P.1.20.001156
ORF1ab/nsp31115D1115DgaTgaC11P.20.000187
ORF1ab/nsp31115D1115delGAT---11Q.10.000126
ORF1ab/nsp31115D1115GgAtgGt11Q.40.000455
ORF1ab/nsp31115D1115GgAtgGt11Q.60.006623
ORF1ab/nsp31115D1115GgAtgGt11Q.80.000165
ORF1ab/nsp31115D1115AgAtgCt11Q.80.000165