CoV-GLUE | Mutations | Mutation
Details of the codons used for the mutation across all lineages (CodonProp is the proportion each codon is used for this AA mutation):
ORF | CodonNum | Mut | ORF1abMut | MutType | RefCodon | MutCodon | AACount | CodonCount | CodonProp | Genome Position |
ORF1ab/nsp3 | 1111 | K1111K | K1929K | syn | aaG | aaA | 2048 | 2048 | 1 | 6050-6052 |
ORF1ab/nsp3 | 1111 | K1111N | K1929N | nonsyn | aaG | aaT | 328 | 322 | 0.981707 | 6050-6052 |
ORF1ab/nsp3 | 1111 | K1111N | K1929N | nonsyn | aaG | aaC | 328 | 6 | 0.0182927 | 6050-6052 |
ORF1ab/nsp3 | 1111 | K1111R | K1929R | nonsyn | aAg | aGg | 324 | 317 | 0.978395 | 6050-6052 |
ORF1ab/nsp3 | 1111 | K1111R | K1929R | nonsyn | AAG | CGT | 324 | 3 | 0.00925926 | 6050-6052 |
ORF1ab/nsp3 | 1111 | K1111R | K1929R | nonsyn | AAg | CGg | 324 | 2 | 0.00617284 | 6050-6052 |
ORF1ab/nsp3 | 1111 | K1111R | K1929R | nonsyn | aAG | aGA | 324 | 2 | 0.00617284 | 6050-6052 |
ORF1ab/nsp3 | 1111 | K1111del | K1929del | del | AAG | --- | 75 | 75 | 1 | 6050-6052 |
ORF1ab/nsp3 | 1111 | K1111T | K1929T | nonsyn | aAg | aCg | 22 | 22 | 1 | 6050-6052 |
ORF1ab/nsp3 | 1111 | K1111E | K1929E | nonsyn | Aag | Gag | 17 | 17 | 1 | 6050-6052 |
ORF1ab/nsp3 | 1111 | K1111X | K1929X | nonsyn | Aag | Tag | 9 | 9 | 1 | 6050-6052 |
ORF1ab/nsp3 | 1111 | K1111M | K1929M | nonsyn | aAg | aTg | 7 | 7 | 1 | 6050-6052 |
ORF1ab/nsp3 | 1111 | K1111S | K1929S | nonsyn | aAG | aGT | 4 | 4 | 1 | 6050-6052 |
ORF1ab/nsp3 | 1111 | K1111del1 | K1929del1 | del | Aag | -ag | 4 | 2 | 0.5 | 6050-6052 |
ORF1ab/nsp3 | 1111 | K1111G | K1929G | nonsyn | AAG | GGT | 4 | 2 | 0.5 | 6050-6052 |
ORF1ab/nsp3 | 1111 | K1111del1 | K1929del1 | del | AAG | -TT | 4 | 1 | 0.25 | 6050-6052 |
ORF1ab/nsp3 | 1111 | K1111del1 | K1929del1 | del | AAg | -Gg | 4 | 1 | 0.25 | 6050-6052 |
ORF1ab/nsp3 | 1111 | K1111G | K1929G | nonsyn | AAg | GGg | 4 | 1 | 0.25 | 6050-6052 |
ORF1ab/nsp3 | 1111 | K1111G | K1929G | nonsyn | AAG | GGA | 4 | 1 | 0.25 | 6050-6052 |
ORF1ab/nsp3 | 1111 | K1111Q | K1929Q | nonsyn | Aag | Cag | 3 | 3 | 1 | 6050-6052 |
ORF1ab/nsp3 | 1111 | K1111D | K1929D | nonsyn | AaG | GaT | 2 | 2 | 1 | 6050-6052 |
ORF1ab/nsp3 | 1111 | K1111H | K1929H | nonsyn | AaG | CaT | 2 | 2 | 1 | 6050-6052 |
ORF1ab/nsp3 | 1111 | K1111F | K1929F | nonsyn | AAG | TTT | 2 | 2 | 1 | 6050-6052 |
ORF1ab/nsp3 | 1111 | K1111del2 | K1929del2 | del | AAG | --A | 1 | 1 | 1 | 6050-6052 |
ORF1ab/nsp3 | 1111 | K1111A | K1929A | nonsyn | AAG | GCC | 1 | 1 | 1 | 6050-6052 |
ORF1ab/nsp3 | 1111 | K1111Y | K1929Y | nonsyn | AaG | TaT | 1 | 1 | 1 | 6050-6052 |
Details of the mutation no within lineages (LineageCodonProp is the proportion the codon is observed at, at this particular site, on each lineage):
ORF | CodonNum | Mut | RefCodon | MutCodon | CodonCount | AACount | Lineage | LineageCodonProp |
ORF1ab/nsp3 | 1111 | K1111K | aaG | aaA | 2048 | 2048 | All | 0.000392 |
ORF1ab/nsp3 | 1111 | K1111K | aaG | aaA | 1099 | 1099 | B.1.588 | 1 |
ORF1ab/nsp3 | 1111 | K1111K | aaG | aaA | 515 | 515 | B.1.587 | 0.97723 |
ORF1ab/nsp3 | 1111 | K1111N | aaG | aaT | 322 | 328 | All | 0.000062 |
ORF1ab/nsp3 | 1111 | K1111N | aaG | aaC | 6 | 328 | All | 0.000001 |
ORF1ab/nsp3 | 1111 | K1111R | aAg | aGg | 317 | 324 | All | 0.000061 |
ORF1ab/nsp3 | 1111 | K1111R | AAG | CGT | 3 | 324 | All | 0.000001 |
ORF1ab/nsp3 | 1111 | K1111R | aAG | aGA | 2 | 324 | All | 0 |
ORF1ab/nsp3 | 1111 | K1111R | AAg | CGg | 2 | 324 | All | 0 |
ORF1ab/nsp3 | 1111 | K1111K | aaG | aaA | 323 | 323 | B.1 | 0.002959 |
ORF1ab/nsp3 | 1111 | K1111R | aAg | aGg | 225 | 225 | B.1.1.7 | 0.000201 |
ORF1ab/nsp3 | 1111 | K1111del | AAG | --- | 75 | 75 | All | 0.000014 |
ORF1ab/nsp3 | 1111 | K1111N | aaG | aaT | 69 | 69 | B.1.617.2 | 0.00026 |
ORF1ab/nsp3 | 1111 | K1111N | aaG | aaT | 51 | 51 | AY.29 | 0.000804 |
ORF1ab/nsp3 | 1111 | K1111N | aaG | aaT | 47 | 48 | B.1.1.7 | 0.000042 |
ORF1ab/nsp3 | 1111 | K1111N | aaG | aaC | 1 | 48 | B.1.1.7 | 0.000001 |
ORF1ab/nsp3 | 1111 | K1111N | aaG | aaT | 27 | 27 | AY.16.1 | 0.012688 |
ORF1ab/nsp3 | 1111 | K1111del | AAG | --- | 27 | 27 | B.1.1.7 | 0.000024 |
ORF1ab/nsp3 | 1111 | K1111K | aaG | aaA | 26 | 26 | B.1.588.1 | 1 |
ORF1ab/nsp3 | 1111 | K1111T | aAg | aCg | 22 | 22 | All | 0.000004 |
ORF1ab/nsp3 | 1111 | K1111K | aaG | aaA | 21 | 21 | B.1.2 | 0.000185 |
ORF1ab/nsp3 | 1111 | K1111R | aAg | aGg | 18 | 18 | AY.7.2 | 0.010067 |
ORF1ab/nsp3 | 1111 | K1111R | aAg | aGg | 18 | 18 | B.1.177.86 | 0.003302 |
ORF1ab/nsp3 | 1111 | K1111E | Aag | Gag | 17 | 17 | All | 0.000003 |
ORF1ab/nsp3 | 1111 | K1111N | aaG | aaT | 17 | 17 | AY.43 | 0.000075 |
ORF1ab/nsp3 | 1111 | K1111N | aaG | aaT | 14 | 14 | AY.103 | 0.000087 |
ORF1ab/nsp3 | 1111 | K1111N | aaG | aaT | 13 | 13 | AY.26 | 0.000368 |
ORF1ab/nsp3 | 1111 | K1111N | aaG | aaT | 10 | 10 | AY.121 | 0.001353 |
ORF1ab/nsp3 | 1111 | K1111K | aaG | aaA | 10 | 10 | B.1.567 | 0.033333 |
ORF1ab/nsp3 | 1111 | K1111X | Aag | Tag | 9 | 9 | All | 0.000002 |
ORF1ab/nsp3 | 1111 | K1111M | aAg | aTg | 7 | 7 | All | 0.000001 |
ORF1ab/nsp3 | 1111 | K1111E | Aag | Gag | 7 | 7 | B.1.1.7 | 0.000006 |
ORF1ab/nsp3 | 1111 | K1111T | aAg | aCg | 7 | 7 | B.1.617.2 | 0.000026 |
ORF1ab/nsp3 | 1111 | K1111R | aAg | aGg | 2 | 6 | 0.111111 | |
ORF1ab/nsp3 | 1111 | K1111R | AAG | CGT | 2 | 6 | 0.111111 | |
ORF1ab/nsp3 | 1111 | K1111R | AAg | CGg | 2 | 6 | 0.111111 | |
ORF1ab/nsp3 | 1111 | K1111R | aAg | aGg | 6 | 6 | AY.118 | 0.000376 |
ORF1ab/nsp3 | 1111 | K1111N | aaG | aaT | 5 | 6 | AY.39 | 0.000124 |
ORF1ab/nsp3 | 1111 | K1111N | aaG | aaC | 1 | 6 | AY.39 | 0.000025 |
ORF1ab/nsp3 | 1111 | K1111N | aaG | aaT | 6 | 6 | AY.4 | 0.000009 |
ORF1ab/nsp3 | 1111 | K1111K | aaG | aaA | 6 | 6 | AY.4 | 0.000009 |
ORF1ab/nsp3 | 1111 | K1111N | aaG | aaT | 6 | 6 | P.1 | 0.000095 |
ORF1ab/nsp3 | 1111 | K1111N | aaG | aaT | 4 | 5 | AY.44 | 0.000024 |
ORF1ab/nsp3 | 1111 | K1111N | aaG | aaC | 1 | 5 | AY.44 | 0.000006 |
ORF1ab/nsp3 | 1111 | K1111T | aAg | aCg | 5 | 5 | B.1.1 | 0.000091 |
ORF1ab/nsp3 | 1111 | K1111N | aaG | aaT | 4 | 5 | B.1.177 | 0.000053 |
ORF1ab/nsp3 | 1111 | K1111N | aaG | aaC | 1 | 5 | B.1.177 | 0.000013 |
ORF1ab/nsp3 | 1111 | K1111N | aaG | aaT | 2 | 4 | 0.111111 | |
ORF1ab/nsp3 | 1111 | K1111N | aaG | aaC | 2 | 4 | 0.111111 | |
ORF1ab/nsp3 | 1111 | K1111S | aAG | aGT | 4 | 4 | All | 0.000001 |
ORF1ab/nsp3 | 1111 | K1111del1 | Aag | -ag | 2 | 4 | All | 0 |
ORF1ab/nsp3 | 1111 | K1111G | AAG | GGT | 2 | 4 | All | 0 |
ORF1ab/nsp3 | 1111 | K1111del1 | AAg | -Gg | 1 | 4 | All | 0 |
ORF1ab/nsp3 | 1111 | K1111del1 | AAG | -TT | 1 | 4 | All | 0 |
ORF1ab/nsp3 | 1111 | K1111G | AAG | GGA | 1 | 4 | All | 0 |
ORF1ab/nsp3 | 1111 | K1111G | AAg | GGg | 1 | 4 | All | 0 |
ORF1ab/nsp3 | 1111 | K1111K | aaG | aaA | 4 | 4 | AY.3 | 0.00004 |
ORF1ab/nsp3 | 1111 | K1111N | aaG | aaT | 4 | 4 | AY.4.2 | 0.000087 |
ORF1ab/nsp3 | 1111 | K1111K | aaG | aaA | 4 | 4 | AY.44 | 0.000024 |
ORF1ab/nsp3 | 1111 | K1111R | aAg | aGg | 4 | 4 | AY.9.2 | 0.000147 |
ORF1ab/nsp3 | 1111 | K1111N | aaG | aaT | 4 | 4 | B.1 | 0.000037 |
ORF1ab/nsp3 | 1111 | K1111R | aAg | aGg | 4 | 4 | B.1.1 | 0.000073 |
ORF1ab/nsp3 | 1111 | K1111K | aaG | aaA | 4 | 4 | B.1.1.7 | 0.000004 |
ORF1ab/nsp3 | 1111 | K1111E | Aag | Gag | 4 | 4 | B.1.177 | 0.000053 |
ORF1ab/nsp3 | 1111 | K1111K | aaG | aaA | 4 | 4 | B.1.617.2 | 0.000015 |
ORF1ab/nsp3 | 1111 | K1111Q | Aag | Cag | 3 | 3 | All | 0.000001 |
ORF1ab/nsp3 | 1111 | K1111K | aaG | aaA | 3 | 3 | AY.25 | 0.000018 |
ORF1ab/nsp3 | 1111 | K1111del | AAG | --- | 3 | 3 | AY.25 | 0.000018 |
ORF1ab/nsp3 | 1111 | K1111K | aaG | aaA | 3 | 3 | AY.4.2.1 | 0.000447 |
ORF1ab/nsp3 | 1111 | K1111K | aaG | aaA | 3 | 3 | AY.57 | 0.001969 |
ORF1ab/nsp3 | 1111 | K1111E | Aag | Gag | 3 | 3 | B.1 | 0.000027 |
ORF1ab/nsp3 | 1111 | K1111del | AAG | --- | 3 | 3 | B.1 | 0.000027 |
ORF1ab/nsp3 | 1111 | K1111del | AAG | --- | 3 | 3 | B.1.1 | 0.000054 |
ORF1ab/nsp3 | 1111 | K1111R | aAg | aGg | 3 | 3 | B.1.1.448 | 0.006098 |
ORF1ab/nsp3 | 1111 | K1111R | aAg | aGg | 3 | 3 | B.1.1.519 | 0.000119 |
ORF1ab/nsp3 | 1111 | K1111R | aAg | aGg | 3 | 3 | B.1.160 | 0.000094 |
ORF1ab/nsp3 | 1111 | K1111N | aaG | aaT | 3 | 3 | B.1.258 | 0.0002 |
ORF1ab/nsp3 | 1111 | K1111R | aAg | aGg | 3 | 3 | P.1 | 0.000047 |
ORF1ab/nsp3 | 1111 | K1111S | aAG | aGT | 2 | 2 | 0.111111 | |
ORF1ab/nsp3 | 1111 | K1111H | AaG | CaT | 2 | 2 | 0.111111 | |
ORF1ab/nsp3 | 1111 | K1111Q | Aag | Cag | 2 | 2 | 0.111111 | |
ORF1ab/nsp3 | 1111 | K1111T | aAg | aCg | 2 | 2 | 0.111111 | |
ORF1ab/nsp3 | 1111 | K1111D | AaG | GaT | 2 | 2 | All | 0 |
ORF1ab/nsp3 | 1111 | K1111F | AAG | TTT | 2 | 2 | All | 0 |
ORF1ab/nsp3 | 1111 | K1111H | AaG | CaT | 2 | 2 | All | 0 |
ORF1ab/nsp3 | 1111 | K1111K | aaG | aaA | 2 | 2 | AY.102 | 0.000053 |
ORF1ab/nsp3 | 1111 | K1111T | aAg | aCg | 2 | 2 | AY.103 | 0.000012 |
ORF1ab/nsp3 | 1111 | K1111R | aAg | aGg | 1 | 2 | AY.113 | 0.000142 |
ORF1ab/nsp3 | 1111 | K1111R | aAG | aGA | 1 | 2 | AY.113 | 0.000142 |
ORF1ab/nsp3 | 1111 | K1111K | aaG | aaA | 2 | 2 | AY.116 | 0.000574 |
ORF1ab/nsp3 | 1111 | K1111K | aaG | aaA | 2 | 2 | AY.117 | 0.000169 |
ORF1ab/nsp3 | 1111 | K1111N | aaG | aaT | 2 | 2 | AY.36 | 0.000296 |
ORF1ab/nsp3 | 1111 | K1111N | aaG | aaT | 2 | 2 | AY.38 | 0.000999 |
ORF1ab/nsp3 | 1111 | K1111M | aAg | aTg | 2 | 2 | AY.4 | 0.000003 |
ORF1ab/nsp3 | 1111 | K1111R | aAg | aGg | 2 | 2 | AY.4 | 0.000003 |
ORF1ab/nsp3 | 1111 | K1111del | AAG | --- | 2 | 2 | AY.4.5 | 0.000215 |
ORF1ab/nsp3 | 1111 | K1111del | AAG | --- | 2 | 2 | AY.43 | 0.000009 |
ORF1ab/nsp3 | 1111 | K1111R | aAg | aGg | 2 | 2 | AY.73 | 0.001331 |
ORF1ab/nsp3 | 1111 | K1111N | aaG | aaT | 2 | 2 | AY.98.1 | 0.000097 |
ORF1ab/nsp3 | 1111 | K1111T | aAg | aCg | 2 | 2 | B | 0.000256 |
ORF1ab/nsp3 | 1111 | K1111R | aAg | aGg | 2 | 2 | B.1 | 0.000018 |
ORF1ab/nsp3 | 1111 | K1111G | AAg | GGg | 1 | 2 | B.1 | 0.000009 |
ORF1ab/nsp3 | 1111 | K1111G | AAG | GGT | 1 | 2 | B.1 | 0.000009 |
ORF1ab/nsp3 | 1111 | K1111G | AAG | GGT | 1 | 2 | B.1.1 | 0.000018 |
ORF1ab/nsp3 | 1111 | K1111G | AAG | GGA | 1 | 2 | B.1.1 | 0.000018 |
ORF1ab/nsp3 | 1111 | K1111K | aaG | aaA | 2 | 2 | B.1.1.133 | 0.016949 |
ORF1ab/nsp3 | 1111 | K1111R | aAg | aGg | 2 | 2 | B.1.1.284 | 0.000215 |
ORF1ab/nsp3 | 1111 | K1111X | Aag | Tag | 2 | 2 | B.1.1.7 | 0.000002 |
ORF1ab/nsp3 | 1111 | K1111del | AAG | --- | 2 | 2 | B.1.177 | 0.000026 |
ORF1ab/nsp3 | 1111 | K1111K | aaG | aaA | 2 | 2 | B.1.177 | 0.000026 |
ORF1ab/nsp3 | 1111 | K1111del | AAG | --- | 2 | 2 | B.1.258 | 0.000133 |
ORF1ab/nsp3 | 1111 | K1111del | AAG | --- | 2 | 2 | B.1.351 | 0.000059 |
ORF1ab/nsp3 | 1111 | K1111R | aAG | aGA | 1 | 2 | B.1.587 | 0.001898 |
ORF1ab/nsp3 | 1111 | K1111R | aAg | aGg | 1 | 2 | B.1.587 | 0.001898 |
ORF1ab/nsp3 | 1111 | K1111N | aaG | aaT | 2 | 2 | B.1.596 | 0.000174 |
ORF1ab/nsp3 | 1111 | K1111K | aaG | aaA | 2 | 2 | B.1.596 | 0.000174 |
ORF1ab/nsp3 | 1111 | K1111del | AAG | --- | 2 | 2 | B.1.617.2 | 0.000008 |
ORF1ab/nsp3 | 1111 | K1111R | aAg | aGg | 2 | 2 | B.1.617.2 | 0.000008 |
ORF1ab/nsp3 | 1111 | K1111N | aaG | aaT | 2 | 2 | B.1.621 | 0.000177 |
ORF1ab/nsp3 | 1111 | K1111K | aaG | aaA | 2 | 2 | B.4.1 | 0.037736 |
ORF1ab/nsp3 | 1111 | K1111del | AAG | --- | 2 | 2 | C.37 | 0.000232 |
ORF1ab/nsp3 | 1111 | K1111del | AAG | --- | 2 | 2 | P.1 | 0.000032 |
ORF1ab/nsp3 | 1111 | K1111N | aaG | aaT | 1 | 1 | A.2 | 0.000662 |
ORF1ab/nsp3 | 1111 | K1111del2 | AAG | --A | 1 | 1 | All | 0 |
ORF1ab/nsp3 | 1111 | K1111Y | AaG | TaT | 1 | 1 | All | 0 |
ORF1ab/nsp3 | 1111 | K1111A | AAG | GCC | 1 | 1 | All | 0 |
ORF1ab/nsp3 | 1111 | K1111N | aaG | aaT | 1 | 1 | AY.100 | 0.000046 |
ORF1ab/nsp3 | 1111 | K1111N | aaG | aaT | 1 | 1 | AY.102 | 0.000027 |
ORF1ab/nsp3 | 1111 | K1111R | aAg | aGg | 1 | 1 | AY.102 | 0.000027 |
ORF1ab/nsp3 | 1111 | K1111R | aAg | aGg | 1 | 1 | AY.103 | 0.000006 |
ORF1ab/nsp3 | 1111 | K1111del | AAG | --- | 1 | 1 | AY.103 | 0.000006 |
ORF1ab/nsp3 | 1111 | K1111S | aAG | aGT | 1 | 1 | AY.103 | 0.000006 |
ORF1ab/nsp3 | 1111 | K1111N | aaG | aaT | 1 | 1 | AY.118 | 0.000063 |
ORF1ab/nsp3 | 1111 | K1111R | aAg | aGg | 1 | 1 | AY.119 | 0.000035 |
ORF1ab/nsp3 | 1111 | K1111N | aaG | aaT | 1 | 1 | AY.120 | 0.000037 |
ORF1ab/nsp3 | 1111 | K1111R | aAg | aGg | 1 | 1 | AY.20 | 0.000039 |
ORF1ab/nsp3 | 1111 | K1111S | aAG | aGT | 1 | 1 | AY.26 | 0.000028 |
ORF1ab/nsp3 | 1111 | K1111R | aAg | aGg | 1 | 1 | AY.29 | 0.000016 |
ORF1ab/nsp3 | 1111 | K1111R | AAG | CGT | 1 | 1 | AY.3 | 0.00001 |
ORF1ab/nsp3 | 1111 | K1111N | aaG | aaT | 1 | 1 | AY.3 | 0.00001 |
ORF1ab/nsp3 | 1111 | K1111E | Aag | Gag | 1 | 1 | AY.37 | 0.000316 |
ORF1ab/nsp3 | 1111 | K1111del | AAG | --- | 1 | 1 | AY.4 | 0.000002 |
ORF1ab/nsp3 | 1111 | K1111T | aAg | aCg | 1 | 1 | AY.4 | 0.000002 |
ORF1ab/nsp3 | 1111 | K1111N | aaG | aaT | 1 | 1 | AY.4.3 | 0.000842 |
ORF1ab/nsp3 | 1111 | K1111T | aAg | aCg | 1 | 1 | AY.43 | 0.000004 |
ORF1ab/nsp3 | 1111 | K1111F | AAG | TTT | 1 | 1 | AY.43 | 0.000004 |
ORF1ab/nsp3 | 1111 | K1111X | Aag | Tag | 1 | 1 | AY.43 | 0.000004 |
ORF1ab/nsp3 | 1111 | K1111del1 | Aag | -ag | 1 | 1 | AY.44 | 0.000006 |
ORF1ab/nsp3 | 1111 | K1111D | AaG | GaT | 1 | 1 | AY.44 | 0.000006 |
ORF1ab/nsp3 | 1111 | K1111R | aAg | aGg | 1 | 1 | AY.44 | 0.000006 |
ORF1ab/nsp3 | 1111 | K1111del | AAG | --- | 1 | 1 | AY.44 | 0.000006 |
ORF1ab/nsp3 | 1111 | K1111del | AAG | --- | 1 | 1 | AY.46.6 | 0.000072 |
ORF1ab/nsp3 | 1111 | K1111N | aaG | aaT | 1 | 1 | AY.5 | 0.000021 |
ORF1ab/nsp3 | 1111 | K1111del | AAG | --- | 1 | 1 | AY.52 | 0.000814 |
ORF1ab/nsp3 | 1111 | K1111del | AAG | --- | 1 | 1 | AY.54 | 0.000095 |
ORF1ab/nsp3 | 1111 | K1111N | aaG | aaT | 1 | 1 | AY.6 | 0.000041 |
ORF1ab/nsp3 | 1111 | K1111del | AAG | --- | 1 | 1 | AY.61 | 0.000105 |
ORF1ab/nsp3 | 1111 | K1111N | aaG | aaT | 1 | 1 | AY.61 | 0.000105 |
ORF1ab/nsp3 | 1111 | K1111del | AAG | --- | 1 | 1 | AY.66 | 0.00107 |
ORF1ab/nsp3 | 1111 | K1111F | AAG | TTT | 1 | 1 | AY.67 | 0.000464 |
ORF1ab/nsp3 | 1111 | K1111R | aAg | aGg | 1 | 1 | AY.68 | 0.000274 |
ORF1ab/nsp3 | 1111 | K1111del | AAG | --- | 1 | 1 | AY.71 | 0.000475 |
ORF1ab/nsp3 | 1111 | K1111del | AAG | --- | 1 | 1 | AY.72 | 0.001361 |
ORF1ab/nsp3 | 1111 | K1111del | AAG | --- | 1 | 1 | AY.84 | 0.000437 |
ORF1ab/nsp3 | 1111 | K1111Q | Aag | Cag | 1 | 1 | AY.85 | 0.000427 |
ORF1ab/nsp3 | 1111 | K1111del | AAG | --- | 1 | 1 | AY.85 | 0.000427 |
ORF1ab/nsp3 | 1111 | K1111del | AAG | --- | 1 | 1 | AY.9.2 | 0.000037 |
ORF1ab/nsp3 | 1111 | K1111K | aaG | aaA | 1 | 1 | AY.9.2 | 0.000037 |
ORF1ab/nsp3 | 1111 | K1111R | aAg | aGg | 1 | 1 | AY.98 | 0.000079 |
ORF1ab/nsp3 | 1111 | K1111del | AAG | --- | 1 | 1 | AY.99 | 0.001049 |
ORF1ab/nsp3 | 1111 | K1111X | Aag | Tag | 1 | 1 | B.1 | 0.000009 |
ORF1ab/nsp3 | 1111 | K1111D | AaG | GaT | 1 | 1 | B.1 | 0.000009 |
ORF1ab/nsp3 | 1111 | K1111Y | AaG | TaT | 1 | 1 | B.1 | 0.000009 |
ORF1ab/nsp3 | 1111 | K1111del1 | AAG | -TT | 1 | 1 | B.1 | 0.000009 |
ORF1ab/nsp3 | 1111 | K1111N | aaG | aaT | 1 | 1 | B.1.1 | 0.000018 |
ORF1ab/nsp3 | 1111 | K1111N | aaG | aaT | 1 | 1 | B.1.1.117 | 0.009709 |
ORF1ab/nsp3 | 1111 | K1111X | Aag | Tag | 1 | 1 | B.1.1.169 | 0.018182 |
ORF1ab/nsp3 | 1111 | K1111K | aaG | aaA | 1 | 1 | B.1.1.207 | 0.001182 |
ORF1ab/nsp3 | 1111 | K1111N | aaG | aaT | 1 | 1 | B.1.1.277 | 0.000759 |
ORF1ab/nsp3 | 1111 | K1111R | aAg | aGg | 1 | 1 | B.1.1.303 | 0.002762 |
ORF1ab/nsp3 | 1111 | K1111del | AAG | --- | 1 | 1 | B.1.1.348 | 0.000796 |
ORF1ab/nsp3 | 1111 | K1111del | AAG | --- | 1 | 1 | B.1.1.409 | 0.002833 |
ORF1ab/nsp3 | 1111 | K1111X | Aag | Tag | 1 | 1 | B.1.1.409 | 0.002833 |
ORF1ab/nsp3 | 1111 | K1111M | aAg | aTg | 1 | 1 | B.1.1.70 | 0.000341 |
ORF1ab/nsp3 | 1111 | K1111N | aaG | aaT | 1 | 1 | B.1.115 | 0.021739 |
ORF1ab/nsp3 | 1111 | K1111del | AAG | --- | 1 | 1 | B.1.160 | 0.000031 |
ORF1ab/nsp3 | 1111 | K1111X | Aag | Tag | 1 | 1 | B.1.177 | 0.000013 |
ORF1ab/nsp3 | 1111 | K1111T | aAg | aCg | 1 | 1 | B.1.177.10 | 0.000878 |
ORF1ab/nsp3 | 1111 | K1111R | aAg | aGg | 1 | 1 | B.1.177.44 | 0.000519 |
ORF1ab/nsp3 | 1111 | K1111del | AAG | --- | 1 | 1 | B.1.177.51 | 0.004566 |
ORF1ab/nsp3 | 1111 | K1111N | aaG | aaT | 1 | 1 | B.1.177.60 | 0.000218 |
ORF1ab/nsp3 | 1111 | K1111del | AAG | --- | 1 | 1 | B.1.2 | 0.000009 |
ORF1ab/nsp3 | 1111 | K1111X | Aag | Tag | 1 | 1 | B.1.2 | 0.000009 |
ORF1ab/nsp3 | 1111 | K1111R | aAg | aGg | 1 | 1 | B.1.221.3 | 0.000833 |
ORF1ab/nsp3 | 1111 | K1111K | aaG | aaA | 1 | 1 | B.1.239 | 0.001221 |
ORF1ab/nsp3 | 1111 | K1111N | aaG | aaT | 1 | 1 | B.1.243 | 0.00007 |
ORF1ab/nsp3 | 1111 | K1111del1 | AAg | -Gg | 1 | 1 | B.1.258 | 0.000067 |
ORF1ab/nsp3 | 1111 | K1111R | aAg | aGg | 1 | 1 | B.1.351 | 0.00003 |
ORF1ab/nsp3 | 1111 | K1111M | aAg | aTg | 1 | 1 | B.1.36 | 0.000146 |
ORF1ab/nsp3 | 1111 | K1111K | aaG | aaA | 1 | 1 | B.1.396 | 0.000706 |
ORF1ab/nsp3 | 1111 | K1111X | Aag | Tag | 1 | 1 | B.1.399 | 0.001934 |
ORF1ab/nsp3 | 1111 | K1111del | AAG | --- | 1 | 1 | B.1.416.1 | 0.001563 |
ORF1ab/nsp3 | 1111 | K1111K | aaG | aaA | 1 | 1 | B.1.427 | 0.00005 |
ORF1ab/nsp3 | 1111 | K1111T | aAg | aCg | 1 | 1 | B.1.429 | 0.000024 |
ORF1ab/nsp3 | 1111 | K1111K | aaG | aaA | 1 | 1 | B.1.429 | 0.000024 |
ORF1ab/nsp3 | 1111 | K1111R | aAg | aGg | 1 | 1 | B.1.429 | 0.000024 |
ORF1ab/nsp3 | 1111 | K1111N | aaG | aaT | 1 | 1 | B.1.429 | 0.000024 |
ORF1ab/nsp3 | 1111 | K1111E | Aag | Gag | 1 | 1 | B.1.438.1 | 0.000107 |
ORF1ab/nsp3 | 1111 | K1111N | aaG | aaT | 1 | 1 | B.1.444 | 0.015873 |
ORF1ab/nsp3 | 1111 | K1111del | AAG | --- | 1 | 1 | B.1.526 | 0.000024 |
ORF1ab/nsp3 | 1111 | K1111M | aAg | aTg | 1 | 1 | B.1.564 | 0.000426 |
ORF1ab/nsp3 | 1111 | K1111N | aaG | aaT | 1 | 1 | B.1.576 | 0.000907 |
ORF1ab/nsp3 | 1111 | K1111N | aaG | aaT | 1 | 1 | B.1.582 | 0.000491 |
ORF1ab/nsp3 | 1111 | K1111K | aaG | aaA | 1 | 1 | B.1.590 | 0.004545 |
ORF1ab/nsp3 | 1111 | K1111K | aaG | aaA | 1 | 1 | B.1.595 | 0.000261 |
ORF1ab/nsp3 | 1111 | K1111del1 | Aag | -ag | 1 | 1 | B.1.596 | 0.000087 |
ORF1ab/nsp3 | 1111 | K1111N | aaG | aaT | 1 | 1 | B.1.617.1 | 0.000129 |
ORF1ab/nsp3 | 1111 | K1111M | aAg | aTg | 1 | 1 | B.1.617.2 | 0.000004 |
ORF1ab/nsp3 | 1111 | K1111A | AAG | GCC | 1 | 1 | B.1.617.2 | 0.000004 |
ORF1ab/nsp3 | 1111 | K1111E | Aag | Gag | 1 | 1 | B.1.617.2 | 0.000004 |
ORF1ab/nsp3 | 1111 | K1111N | aaG | aaT | 1 | 1 | B.1.637 | 0.000073 |
ORF1ab/nsp3 | 1111 | K1111N | aaG | aaT | 1 | 1 | B.1.9.5 | 0.005682 |
ORF1ab/nsp3 | 1111 | K1111del | AAG | --- | 1 | 1 | B.15 | 0.017544 |
ORF1ab/nsp3 | 1111 | K1111R | aAg | aGg | 1 | 1 | B.6.5 | 0.076923 |
ORF1ab/nsp3 | 1111 | K1111del2 | AAG | --A | 1 | 1 | C.35 | 0.000774 |
ORF1ab/nsp3 | 1111 | K1111N | aaG | aaT | 1 | 1 | D.2 | 0.000075 |
ORF1ab/nsp3 | 1111 | K1111M | aAg | aTg | 1 | 1 | P.1 | 0.000016 |
ORF1ab/nsp3 | 1111 | K1111K | aaG | aaA | 1 | 1 | P.1.1 | 0.000318 |
ORF1ab/nsp3 | 1111 | K1111N | aaG | aaT | 1 | 1 | P.1.15 | 0.000232 |
ORF1ab/nsp3 | 1111 | K1111N | aaG | aaT | 1 | 1 | P.1.2 | 0.001156 |
ORF1ab/nsp3 | 1111 | K1111R | aAg | aGg | 1 | 1 | P.2 | 0.000187 |
ORF1ab/nsp3 | 1111 | K1111del | AAG | --- | 1 | 1 | Q.1 | 0.000126 |
ORF1ab/nsp3 | 1111 | K1111R | aAg | aGg | 1 | 1 | Q.8 | 0.000165 |
CoV-GLUE is still in development. CoV-GLUE was originally developed as part of COG-UK by Josh Singer using the GLUE framework at the MRC-University of Glasgow Centre for Virus Research (CVR). In 2021 it was redeveloped by Richard Orton to scale to the millions of genome sequences available. We acknowledge support from the MRC (MC_UU_12014/12), WT (220977/Z/20/Z) and UKRI G2P (MR/W005611/1). Please contact Richard Orton with any queries: Richard.Orton@glasgow.ac.uk
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