CoV-GLUE | Mutations | Mutation

CoV-GLUE Mutation: ORF = ORF1ab/nsp3 : CodonNum = 1111

Details of the codons used for the mutation across all lineages (CodonProp is the proportion each codon is used for this AA mutation):

ORFCodonNumMutORF1abMutMutTypeRefCodonMutCodonAACountCodonCountCodonPropGenome Position
ORF1ab/nsp31111K1111KK1929KsynaaGaaA2048204816050-6052
ORF1ab/nsp31111K1111NK1929NnonsynaaGaaT3283220.9817076050-6052
ORF1ab/nsp31111K1111NK1929NnonsynaaGaaC32860.01829276050-6052
ORF1ab/nsp31111K1111RK1929RnonsynaAgaGg3243170.9783956050-6052
ORF1ab/nsp31111K1111RK1929RnonsynAAGCGT32430.009259266050-6052
ORF1ab/nsp31111K1111RK1929RnonsynAAgCGg32420.006172846050-6052
ORF1ab/nsp31111K1111RK1929RnonsynaAGaGA32420.006172846050-6052
ORF1ab/nsp31111K1111delK1929deldelAAG---757516050-6052
ORF1ab/nsp31111K1111TK1929TnonsynaAgaCg222216050-6052
ORF1ab/nsp31111K1111EK1929EnonsynAagGag171716050-6052
ORF1ab/nsp31111K1111XK1929XnonsynAagTag9916050-6052
ORF1ab/nsp31111K1111MK1929MnonsynaAgaTg7716050-6052
ORF1ab/nsp31111K1111SK1929SnonsynaAGaGT4416050-6052
ORF1ab/nsp31111K1111del1K1929del1delAag-ag420.56050-6052
ORF1ab/nsp31111K1111GK1929GnonsynAAGGGT420.56050-6052
ORF1ab/nsp31111K1111del1K1929del1delAAG-TT410.256050-6052
ORF1ab/nsp31111K1111del1K1929del1delAAg-Gg410.256050-6052
ORF1ab/nsp31111K1111GK1929GnonsynAAgGGg410.256050-6052
ORF1ab/nsp31111K1111GK1929GnonsynAAGGGA410.256050-6052
ORF1ab/nsp31111K1111QK1929QnonsynAagCag3316050-6052
ORF1ab/nsp31111K1111DK1929DnonsynAaGGaT2216050-6052
ORF1ab/nsp31111K1111HK1929HnonsynAaGCaT2216050-6052
ORF1ab/nsp31111K1111FK1929FnonsynAAGTTT2216050-6052
ORF1ab/nsp31111K1111del2K1929del2delAAG--A1116050-6052
ORF1ab/nsp31111K1111AK1929AnonsynAAGGCC1116050-6052
ORF1ab/nsp31111K1111YK1929YnonsynAaGTaT1116050-6052

Details of the mutation no within lineages (LineageCodonProp is the proportion the codon is observed at, at this particular site, on each lineage):

ORFCodonNumMutRefCodonMutCodonCodonCountAACountLineageLineageCodonProp
ORF1ab/nsp31111K1111KaaGaaA20482048All0.000392
ORF1ab/nsp31111K1111KaaGaaA10991099B.1.5881
ORF1ab/nsp31111K1111KaaGaaA515515B.1.5870.97723
ORF1ab/nsp31111K1111NaaGaaT322328All0.000062
ORF1ab/nsp31111K1111NaaGaaC6328All0.000001
ORF1ab/nsp31111K1111RaAgaGg317324All0.000061
ORF1ab/nsp31111K1111RAAGCGT3324All0.000001
ORF1ab/nsp31111K1111RaAGaGA2324All0
ORF1ab/nsp31111K1111RAAgCGg2324All0
ORF1ab/nsp31111K1111KaaGaaA323323B.10.002959
ORF1ab/nsp31111K1111RaAgaGg225225B.1.1.70.000201
ORF1ab/nsp31111K1111delAAG---7575All0.000014
ORF1ab/nsp31111K1111NaaGaaT6969B.1.617.20.00026
ORF1ab/nsp31111K1111NaaGaaT5151AY.290.000804
ORF1ab/nsp31111K1111NaaGaaT4748B.1.1.70.000042
ORF1ab/nsp31111K1111NaaGaaC148B.1.1.70.000001
ORF1ab/nsp31111K1111NaaGaaT2727AY.16.10.012688
ORF1ab/nsp31111K1111delAAG---2727B.1.1.70.000024
ORF1ab/nsp31111K1111KaaGaaA2626B.1.588.11
ORF1ab/nsp31111K1111TaAgaCg2222All0.000004
ORF1ab/nsp31111K1111KaaGaaA2121B.1.20.000185
ORF1ab/nsp31111K1111RaAgaGg1818AY.7.20.010067
ORF1ab/nsp31111K1111RaAgaGg1818B.1.177.860.003302
ORF1ab/nsp31111K1111EAagGag1717All0.000003
ORF1ab/nsp31111K1111NaaGaaT1717AY.430.000075
ORF1ab/nsp31111K1111NaaGaaT1414AY.1030.000087
ORF1ab/nsp31111K1111NaaGaaT1313AY.260.000368
ORF1ab/nsp31111K1111NaaGaaT1010AY.1210.001353
ORF1ab/nsp31111K1111KaaGaaA1010B.1.5670.033333
ORF1ab/nsp31111K1111XAagTag99All0.000002
ORF1ab/nsp31111K1111MaAgaTg77All0.000001
ORF1ab/nsp31111K1111EAagGag77B.1.1.70.000006
ORF1ab/nsp31111K1111TaAgaCg77B.1.617.20.000026
ORF1ab/nsp31111K1111RaAgaGg260.111111
ORF1ab/nsp31111K1111RAAGCGT260.111111
ORF1ab/nsp31111K1111RAAgCGg260.111111
ORF1ab/nsp31111K1111RaAgaGg66AY.1180.000376
ORF1ab/nsp31111K1111NaaGaaT56AY.390.000124
ORF1ab/nsp31111K1111NaaGaaC16AY.390.000025
ORF1ab/nsp31111K1111NaaGaaT66AY.40.000009
ORF1ab/nsp31111K1111KaaGaaA66AY.40.000009
ORF1ab/nsp31111K1111NaaGaaT66P.10.000095
ORF1ab/nsp31111K1111NaaGaaT45AY.440.000024
ORF1ab/nsp31111K1111NaaGaaC15AY.440.000006
ORF1ab/nsp31111K1111TaAgaCg55B.1.10.000091
ORF1ab/nsp31111K1111NaaGaaT45B.1.1770.000053
ORF1ab/nsp31111K1111NaaGaaC15B.1.1770.000013
ORF1ab/nsp31111K1111NaaGaaT240.111111
ORF1ab/nsp31111K1111NaaGaaC240.111111
ORF1ab/nsp31111K1111SaAGaGT44All0.000001
ORF1ab/nsp31111K1111del1Aag-ag24All0
ORF1ab/nsp31111K1111GAAGGGT24All0
ORF1ab/nsp31111K1111del1AAg-Gg14All0
ORF1ab/nsp31111K1111del1AAG-TT14All0
ORF1ab/nsp31111K1111GAAGGGA14All0
ORF1ab/nsp31111K1111GAAgGGg14All0
ORF1ab/nsp31111K1111KaaGaaA44AY.30.00004
ORF1ab/nsp31111K1111NaaGaaT44AY.4.20.000087
ORF1ab/nsp31111K1111KaaGaaA44AY.440.000024
ORF1ab/nsp31111K1111RaAgaGg44AY.9.20.000147
ORF1ab/nsp31111K1111NaaGaaT44B.10.000037
ORF1ab/nsp31111K1111RaAgaGg44B.1.10.000073
ORF1ab/nsp31111K1111KaaGaaA44B.1.1.70.000004
ORF1ab/nsp31111K1111EAagGag44B.1.1770.000053
ORF1ab/nsp31111K1111KaaGaaA44B.1.617.20.000015
ORF1ab/nsp31111K1111QAagCag33All0.000001
ORF1ab/nsp31111K1111KaaGaaA33AY.250.000018
ORF1ab/nsp31111K1111delAAG---33AY.250.000018
ORF1ab/nsp31111K1111KaaGaaA33AY.4.2.10.000447
ORF1ab/nsp31111K1111KaaGaaA33AY.570.001969
ORF1ab/nsp31111K1111EAagGag33B.10.000027
ORF1ab/nsp31111K1111delAAG---33B.10.000027
ORF1ab/nsp31111K1111delAAG---33B.1.10.000054
ORF1ab/nsp31111K1111RaAgaGg33B.1.1.4480.006098
ORF1ab/nsp31111K1111RaAgaGg33B.1.1.5190.000119
ORF1ab/nsp31111K1111RaAgaGg33B.1.1600.000094
ORF1ab/nsp31111K1111NaaGaaT33B.1.2580.0002
ORF1ab/nsp31111K1111RaAgaGg33P.10.000047
ORF1ab/nsp31111K1111SaAGaGT220.111111
ORF1ab/nsp31111K1111HAaGCaT220.111111
ORF1ab/nsp31111K1111QAagCag220.111111
ORF1ab/nsp31111K1111TaAgaCg220.111111
ORF1ab/nsp31111K1111DAaGGaT22All0
ORF1ab/nsp31111K1111FAAGTTT22All0
ORF1ab/nsp31111K1111HAaGCaT22All0
ORF1ab/nsp31111K1111KaaGaaA22AY.1020.000053
ORF1ab/nsp31111K1111TaAgaCg22AY.1030.000012
ORF1ab/nsp31111K1111RaAgaGg12AY.1130.000142
ORF1ab/nsp31111K1111RaAGaGA12AY.1130.000142
ORF1ab/nsp31111K1111KaaGaaA22AY.1160.000574
ORF1ab/nsp31111K1111KaaGaaA22AY.1170.000169
ORF1ab/nsp31111K1111NaaGaaT22AY.360.000296
ORF1ab/nsp31111K1111NaaGaaT22AY.380.000999
ORF1ab/nsp31111K1111MaAgaTg22AY.40.000003
ORF1ab/nsp31111K1111RaAgaGg22AY.40.000003
ORF1ab/nsp31111K1111delAAG---22AY.4.50.000215
ORF1ab/nsp31111K1111delAAG---22AY.430.000009
ORF1ab/nsp31111K1111RaAgaGg22AY.730.001331
ORF1ab/nsp31111K1111NaaGaaT22AY.98.10.000097
ORF1ab/nsp31111K1111TaAgaCg22B0.000256
ORF1ab/nsp31111K1111RaAgaGg22B.10.000018
ORF1ab/nsp31111K1111GAAgGGg12B.10.000009
ORF1ab/nsp31111K1111GAAGGGT12B.10.000009
ORF1ab/nsp31111K1111GAAGGGT12B.1.10.000018
ORF1ab/nsp31111K1111GAAGGGA12B.1.10.000018
ORF1ab/nsp31111K1111KaaGaaA22B.1.1.1330.016949
ORF1ab/nsp31111K1111RaAgaGg22B.1.1.2840.000215
ORF1ab/nsp31111K1111XAagTag22B.1.1.70.000002
ORF1ab/nsp31111K1111delAAG---22B.1.1770.000026
ORF1ab/nsp31111K1111KaaGaaA22B.1.1770.000026
ORF1ab/nsp31111K1111delAAG---22B.1.2580.000133
ORF1ab/nsp31111K1111delAAG---22B.1.3510.000059
ORF1ab/nsp31111K1111RaAGaGA12B.1.5870.001898
ORF1ab/nsp31111K1111RaAgaGg12B.1.5870.001898
ORF1ab/nsp31111K1111NaaGaaT22B.1.5960.000174
ORF1ab/nsp31111K1111KaaGaaA22B.1.5960.000174
ORF1ab/nsp31111K1111delAAG---22B.1.617.20.000008
ORF1ab/nsp31111K1111RaAgaGg22B.1.617.20.000008
ORF1ab/nsp31111K1111NaaGaaT22B.1.6210.000177
ORF1ab/nsp31111K1111KaaGaaA22B.4.10.037736
ORF1ab/nsp31111K1111delAAG---22C.370.000232
ORF1ab/nsp31111K1111delAAG---22P.10.000032
ORF1ab/nsp31111K1111NaaGaaT11A.20.000662
ORF1ab/nsp31111K1111del2AAG--A11All0
ORF1ab/nsp31111K1111YAaGTaT11All0
ORF1ab/nsp31111K1111AAAGGCC11All0
ORF1ab/nsp31111K1111NaaGaaT11AY.1000.000046
ORF1ab/nsp31111K1111NaaGaaT11AY.1020.000027
ORF1ab/nsp31111K1111RaAgaGg11AY.1020.000027
ORF1ab/nsp31111K1111RaAgaGg11AY.1030.000006
ORF1ab/nsp31111K1111delAAG---11AY.1030.000006
ORF1ab/nsp31111K1111SaAGaGT11AY.1030.000006
ORF1ab/nsp31111K1111NaaGaaT11AY.1180.000063
ORF1ab/nsp31111K1111RaAgaGg11AY.1190.000035
ORF1ab/nsp31111K1111NaaGaaT11AY.1200.000037
ORF1ab/nsp31111K1111RaAgaGg11AY.200.000039
ORF1ab/nsp31111K1111SaAGaGT11AY.260.000028
ORF1ab/nsp31111K1111RaAgaGg11AY.290.000016
ORF1ab/nsp31111K1111RAAGCGT11AY.30.00001
ORF1ab/nsp31111K1111NaaGaaT11AY.30.00001
ORF1ab/nsp31111K1111EAagGag11AY.370.000316
ORF1ab/nsp31111K1111delAAG---11AY.40.000002
ORF1ab/nsp31111K1111TaAgaCg11AY.40.000002
ORF1ab/nsp31111K1111NaaGaaT11AY.4.30.000842
ORF1ab/nsp31111K1111TaAgaCg11AY.430.000004
ORF1ab/nsp31111K1111FAAGTTT11AY.430.000004
ORF1ab/nsp31111K1111XAagTag11AY.430.000004
ORF1ab/nsp31111K1111del1Aag-ag11AY.440.000006
ORF1ab/nsp31111K1111DAaGGaT11AY.440.000006
ORF1ab/nsp31111K1111RaAgaGg11AY.440.000006
ORF1ab/nsp31111K1111delAAG---11AY.440.000006
ORF1ab/nsp31111K1111delAAG---11AY.46.60.000072
ORF1ab/nsp31111K1111NaaGaaT11AY.50.000021
ORF1ab/nsp31111K1111delAAG---11AY.520.000814
ORF1ab/nsp31111K1111delAAG---11AY.540.000095
ORF1ab/nsp31111K1111NaaGaaT11AY.60.000041
ORF1ab/nsp31111K1111delAAG---11AY.610.000105
ORF1ab/nsp31111K1111NaaGaaT11AY.610.000105
ORF1ab/nsp31111K1111delAAG---11AY.660.00107
ORF1ab/nsp31111K1111FAAGTTT11AY.670.000464
ORF1ab/nsp31111K1111RaAgaGg11AY.680.000274
ORF1ab/nsp31111K1111delAAG---11AY.710.000475
ORF1ab/nsp31111K1111delAAG---11AY.720.001361
ORF1ab/nsp31111K1111delAAG---11AY.840.000437
ORF1ab/nsp31111K1111QAagCag11AY.850.000427
ORF1ab/nsp31111K1111delAAG---11AY.850.000427
ORF1ab/nsp31111K1111delAAG---11AY.9.20.000037
ORF1ab/nsp31111K1111KaaGaaA11AY.9.20.000037
ORF1ab/nsp31111K1111RaAgaGg11AY.980.000079
ORF1ab/nsp31111K1111delAAG---11AY.990.001049
ORF1ab/nsp31111K1111XAagTag11B.10.000009
ORF1ab/nsp31111K1111DAaGGaT11B.10.000009
ORF1ab/nsp31111K1111YAaGTaT11B.10.000009
ORF1ab/nsp31111K1111del1AAG-TT11B.10.000009
ORF1ab/nsp31111K1111NaaGaaT11B.1.10.000018
ORF1ab/nsp31111K1111NaaGaaT11B.1.1.1170.009709
ORF1ab/nsp31111K1111XAagTag11B.1.1.1690.018182
ORF1ab/nsp31111K1111KaaGaaA11B.1.1.2070.001182
ORF1ab/nsp31111K1111NaaGaaT11B.1.1.2770.000759
ORF1ab/nsp31111K1111RaAgaGg11B.1.1.3030.002762
ORF1ab/nsp31111K1111delAAG---11B.1.1.3480.000796
ORF1ab/nsp31111K1111delAAG---11B.1.1.4090.002833
ORF1ab/nsp31111K1111XAagTag11B.1.1.4090.002833
ORF1ab/nsp31111K1111MaAgaTg11B.1.1.700.000341
ORF1ab/nsp31111K1111NaaGaaT11B.1.1150.021739
ORF1ab/nsp31111K1111delAAG---11B.1.1600.000031
ORF1ab/nsp31111K1111XAagTag11B.1.1770.000013
ORF1ab/nsp31111K1111TaAgaCg11B.1.177.100.000878
ORF1ab/nsp31111K1111RaAgaGg11B.1.177.440.000519
ORF1ab/nsp31111K1111delAAG---11B.1.177.510.004566
ORF1ab/nsp31111K1111NaaGaaT11B.1.177.600.000218
ORF1ab/nsp31111K1111delAAG---11B.1.20.000009
ORF1ab/nsp31111K1111XAagTag11B.1.20.000009
ORF1ab/nsp31111K1111RaAgaGg11B.1.221.30.000833
ORF1ab/nsp31111K1111KaaGaaA11B.1.2390.001221
ORF1ab/nsp31111K1111NaaGaaT11B.1.2430.00007
ORF1ab/nsp31111K1111del1AAg-Gg11B.1.2580.000067
ORF1ab/nsp31111K1111RaAgaGg11B.1.3510.00003
ORF1ab/nsp31111K1111MaAgaTg11B.1.360.000146
ORF1ab/nsp31111K1111KaaGaaA11B.1.3960.000706
ORF1ab/nsp31111K1111XAagTag11B.1.3990.001934
ORF1ab/nsp31111K1111delAAG---11B.1.416.10.001563
ORF1ab/nsp31111K1111KaaGaaA11B.1.4270.00005
ORF1ab/nsp31111K1111TaAgaCg11B.1.4290.000024
ORF1ab/nsp31111K1111KaaGaaA11B.1.4290.000024
ORF1ab/nsp31111K1111RaAgaGg11B.1.4290.000024
ORF1ab/nsp31111K1111NaaGaaT11B.1.4290.000024
ORF1ab/nsp31111K1111EAagGag11B.1.438.10.000107
ORF1ab/nsp31111K1111NaaGaaT11B.1.4440.015873
ORF1ab/nsp31111K1111delAAG---11B.1.5260.000024
ORF1ab/nsp31111K1111MaAgaTg11B.1.5640.000426
ORF1ab/nsp31111K1111NaaGaaT11B.1.5760.000907
ORF1ab/nsp31111K1111NaaGaaT11B.1.5820.000491
ORF1ab/nsp31111K1111KaaGaaA11B.1.5900.004545
ORF1ab/nsp31111K1111KaaGaaA11B.1.5950.000261
ORF1ab/nsp31111K1111del1Aag-ag11B.1.5960.000087
ORF1ab/nsp31111K1111NaaGaaT11B.1.617.10.000129
ORF1ab/nsp31111K1111MaAgaTg11B.1.617.20.000004
ORF1ab/nsp31111K1111AAAGGCC11B.1.617.20.000004
ORF1ab/nsp31111K1111EAagGag11B.1.617.20.000004
ORF1ab/nsp31111K1111NaaGaaT11B.1.6370.000073
ORF1ab/nsp31111K1111NaaGaaT11B.1.9.50.005682
ORF1ab/nsp31111K1111delAAG---11B.150.017544
ORF1ab/nsp31111K1111RaAgaGg11B.6.50.076923
ORF1ab/nsp31111K1111del2AAG--A11C.350.000774
ORF1ab/nsp31111K1111NaaGaaT11D.20.000075
ORF1ab/nsp31111K1111MaAgaTg11P.10.000016
ORF1ab/nsp31111K1111KaaGaaA11P.1.10.000318
ORF1ab/nsp31111K1111NaaGaaT11P.1.150.000232
ORF1ab/nsp31111K1111NaaGaaT11P.1.20.001156
ORF1ab/nsp31111K1111RaAgaGg11P.20.000187
ORF1ab/nsp31111K1111delAAG---11Q.10.000126
ORF1ab/nsp31111K1111RaAgaGg11Q.80.000165