CoV-GLUE | Mutations | Mutation
Details of the codons used for the mutation across all lineages (CodonProp is the proportion each codon is used for this AA mutation):
ORF | CodonNum | Mut | ORF1abMut | MutType | RefCodon | MutCodon | AACount | CodonCount | CodonProp | Genome Position |
ORF1ab/nsp3 | 1104 | N1104N | N1922N | syn | aaC | aaT | 8620 | 8620 | 1 | 6029-6031 |
ORF1ab/nsp3 | 1104 | N1104K | N1922K | nonsyn | aaC | aaA | 289 | 247 | 0.854671 | 6029-6031 |
ORF1ab/nsp3 | 1104 | N1104K | N1922K | nonsyn | aaC | aaG | 289 | 42 | 0.145329 | 6029-6031 |
ORF1ab/nsp3 | 1104 | N1104S | N1922S | nonsyn | aAc | aGc | 204 | 203 | 0.995098 | 6029-6031 |
ORF1ab/nsp3 | 1104 | N1104S | N1922S | nonsyn | aAC | aGT | 204 | 1 | 0.00490196 | 6029-6031 |
ORF1ab/nsp3 | 1104 | N1104del | N1922del | del | AAC | --- | 87 | 87 | 1 | 6029-6031 |
ORF1ab/nsp3 | 1104 | N1104D | N1922D | nonsyn | Aac | Gac | 84 | 84 | 1 | 6029-6031 |
ORF1ab/nsp3 | 1104 | N1104H | N1922H | nonsyn | Aac | Cac | 49 | 48 | 0.979592 | 6029-6031 |
ORF1ab/nsp3 | 1104 | N1104H | N1922H | nonsyn | AaC | CaT | 49 | 1 | 0.0204082 | 6029-6031 |
ORF1ab/nsp3 | 1104 | N1104Y | N1922Y | nonsyn | Aac | Tac | 32 | 32 | 1 | 6029-6031 |
ORF1ab/nsp3 | 1104 | N1104T | N1922T | nonsyn | aAc | aCc | 11 | 8 | 0.727273 | 6029-6031 |
ORF1ab/nsp3 | 1104 | N1104T | N1922T | nonsyn | aAC | aCA | 11 | 3 | 0.272727 | 6029-6031 |
ORF1ab/nsp3 | 1104 | N1104I | N1922I | nonsyn | aAc | aTc | 10 | 8 | 0.8 | 6029-6031 |
ORF1ab/nsp3 | 1104 | N1104I | N1922I | nonsyn | aAC | aTA | 10 | 1 | 0.1 | 6029-6031 |
ORF1ab/nsp3 | 1104 | N1104I | N1922I | nonsyn | aAC | aTT | 10 | 1 | 0.1 | 6029-6031 |
ORF1ab/nsp3 | 1104 | N1104R | N1922R | nonsyn | AAC | CGA | 6 | 3 | 0.5 | 6029-6031 |
ORF1ab/nsp3 | 1104 | N1104R | N1922R | nonsyn | aAC | aGA | 6 | 2 | 0.333333 | 6029-6031 |
ORF1ab/nsp3 | 1104 | N1104R | N1922R | nonsyn | AAc | CGc | 6 | 1 | 0.166667 | 6029-6031 |
ORF1ab/nsp3 | 1104 | N1104del2 | N1922del2 | del | AAC | --N | 5 | 2 | 0.4 | 6029-6031 |
ORF1ab/nsp3 | 1104 | N1104del2 | N1922del2 | del | aAC | a-- | 5 | 2 | 0.4 | 6029-6031 |
ORF1ab/nsp3 | 1104 | N1104del2 | N1922del2 | del | AAc | --c | 5 | 1 | 0.2 | 6029-6031 |
ORF1ab/nsp3 | 1104 | N1104F | N1922F | nonsyn | AAc | TTc | 2 | 2 | 1 | 6029-6031 |
ORF1ab/nsp3 | 1104 | N1104del1 | N1922del1 | del | AaC | -aN | 2 | 1 | 0.5 | 6029-6031 |
ORF1ab/nsp3 | 1104 | N1104del1 | N1922del1 | del | AaC | -aT | 2 | 1 | 0.5 | 6029-6031 |
ORF1ab/nsp3 | 1104 | N1104Q | N1922Q | nonsyn | AaC | CaA | 1 | 1 | 1 | 6029-6031 |
ORF1ab/nsp3 | 1104 | N1104L | N1922L | nonsyn | AAc | CTc | 1 | 1 | 1 | 6029-6031 |
Details of the mutation no within lineages (LineageCodonProp is the proportion the codon is observed at, at this particular site, on each lineage):
ORF | CodonNum | Mut | RefCodon | MutCodon | CodonCount | AACount | Lineage | LineageCodonProp |
ORF1ab/nsp3 | 1104 | N1104N | aaC | aaT | 8620 | 8620 | All | 0.001649 |
ORF1ab/nsp3 | 1104 | N1104N | aaC | aaT | 2040 | 2040 | AE.8 | 0.997555 |
ORF1ab/nsp3 | 1104 | N1104N | aaC | aaT | 1635 | 1635 | B.1.1.7 | 0.001464 |
ORF1ab/nsp3 | 1104 | N1104N | aaC | aaT | 838 | 838 | B.1.637 | 0.061235 |
ORF1ab/nsp3 | 1104 | N1104N | aaC | aaT | 530 | 530 | AY.103 | 0.003291 |
ORF1ab/nsp3 | 1104 | N1104N | aaC | aaT | 421 | 421 | AY.4 | 0.000655 |
ORF1ab/nsp3 | 1104 | N1104N | aaC | aaT | 298 | 298 | AY.44 | 0.001814 |
ORF1ab/nsp3 | 1104 | N1104K | aaC | aaA | 247 | 289 | All | 0.000047 |
ORF1ab/nsp3 | 1104 | N1104K | aaC | aaG | 42 | 289 | All | 0.000008 |
ORF1ab/nsp3 | 1104 | N1104N | aaC | aaT | 275 | 275 | B.1.617.2 | 0.001035 |
ORF1ab/nsp3 | 1104 | N1104N | aaC | aaT | 225 | 225 | AY.20 | 0.008745 |
ORF1ab/nsp3 | 1104 | N1104S | aAc | aGc | 203 | 204 | All | 0.000039 |
ORF1ab/nsp3 | 1104 | N1104S | aAC | aGT | 1 | 204 | All | 0 |
ORF1ab/nsp3 | 1104 | N1104N | aaC | aaT | 184 | 184 | AY.43 | 0.000815 |
ORF1ab/nsp3 | 1104 | N1104N | aaC | aaT | 107 | 107 | B.1.2 | 0.000942 |
ORF1ab/nsp3 | 1104 | N1104N | aaC | aaT | 91 | 91 | AY.29 | 0.001435 |
ORF1ab/nsp3 | 1104 | N1104N | aaC | aaT | 91 | 91 | P.1 | 0.001434 |
ORF1ab/nsp3 | 1104 | N1104S | aAc | aGc | 90 | 90 | AY.4 | 0.00014 |
ORF1ab/nsp3 | 1104 | N1104N | aaC | aaT | 90 | 90 | B.1 | 0.000824 |
ORF1ab/nsp3 | 1104 | N1104del | AAC | --- | 87 | 87 | All | 0.000017 |
ORF1ab/nsp3 | 1104 | N1104D | Aac | Gac | 84 | 84 | All | 0.000016 |
ORF1ab/nsp3 | 1104 | N1104N | aaC | aaT | 75 | 75 | AY.3 | 0.000746 |
ORF1ab/nsp3 | 1104 | N1104K | aaC | aaA | 72 | 72 | AY.4 | 0.000112 |
ORF1ab/nsp3 | 1104 | N1104N | aaC | aaT | 67 | 67 | B.1.1 | 0.001215 |
ORF1ab/nsp3 | 1104 | N1104N | aaC | aaT | 65 | 65 | AY.102 | 0.001723 |
ORF1ab/nsp3 | 1104 | N1104N | aaC | aaT | 65 | 65 | B.1.177 | 0.000856 |
ORF1ab/nsp3 | 1104 | N1104N | aaC | aaT | 58 | 58 | AY.25 | 0.000349 |
ORF1ab/nsp3 | 1104 | N1104N | aaC | aaT | 51 | 51 | AY.118 | 0.003195 |
ORF1ab/nsp3 | 1104 | N1104N | aaC | aaT | 51 | 51 | B.1.258.11 | 0.020214 |
ORF1ab/nsp3 | 1104 | N1104H | Aac | Cac | 48 | 49 | All | 0.000009 |
ORF1ab/nsp3 | 1104 | N1104H | AaC | CaT | 1 | 49 | All | 0 |
ORF1ab/nsp3 | 1104 | N1104N | aaC | aaT | 49 | 49 | AY.47 | 0.001524 |
ORF1ab/nsp3 | 1104 | N1104N | aaC | aaT | 46 | 46 | B.1.258 | 0.003061 |
ORF1ab/nsp3 | 1104 | N1104K | aaC | aaA | 45 | 45 | AY.54 | 0.004291 |
ORF1ab/nsp3 | 1104 | N1104K | aaC | aaG | 39 | 40 | AY.102 | 0.001034 |
ORF1ab/nsp3 | 1104 | N1104K | aaC | aaA | 1 | 40 | AY.102 | 0.000027 |
ORF1ab/nsp3 | 1104 | N1104N | aaC | aaT | 40 | 40 | AY.26 | 0.001132 |
ORF1ab/nsp3 | 1104 | N1104N | aaC | aaT | 40 | 40 | B.1.1.519 | 0.001588 |
ORF1ab/nsp3 | 1104 | N1104del | AAC | --- | 35 | 35 | B.1.1.7 | 0.000031 |
ORF1ab/nsp3 | 1104 | N1104K | aaC | aaA | 34 | 34 | B.1.1 | 0.000617 |
ORF1ab/nsp3 | 1104 | N1104N | aaC | aaT | 33 | 33 | AY.54 | 0.003146 |
ORF1ab/nsp3 | 1104 | N1104N | aaC | aaT | 33 | 33 | B.1.232 | 0.017732 |
ORF1ab/nsp3 | 1104 | N1104Y | Aac | Tac | 32 | 32 | All | 0.000006 |
ORF1ab/nsp3 | 1104 | N1104N | aaC | aaT | 31 | 31 | B.1.596 | 0.002701 |
ORF1ab/nsp3 | 1104 | N1104N | aaC | aaT | 27 | 27 | B.1.351.3 | 0.023663 |
ORF1ab/nsp3 | 1104 | N1104N | aaC | aaT | 26 | 26 | AY.39 | 0.000642 |
ORF1ab/nsp3 | 1104 | N1104N | aaC | aaT | 24 | 24 | AY.98.1 | 0.001162 |
ORF1ab/nsp3 | 1104 | N1104N | aaC | aaT | 23 | 23 | B.1.1.222 | 0.004692 |
ORF1ab/nsp3 | 1104 | N1104S | aAc | aGc | 22 | 22 | B.1.1.7 | 0.00002 |
ORF1ab/nsp3 | 1104 | N1104N | aaC | aaT | 21 | 21 | B.1.429 | 0.000494 |
ORF1ab/nsp3 | 1104 | N1104N | aaC | aaT | 19 | 19 | B.1.243 | 0.001322 |
ORF1ab/nsp3 | 1104 | N1104N | aaC | aaT | 19 | 19 | B.1.427 | 0.000959 |
ORF1ab/nsp3 | 1104 | N1104K | aaC | aaA | 19 | 19 | B.1.617.2 | 0.000072 |
ORF1ab/nsp3 | 1104 | N1104N | aaC | aaT | 19 | 19 | R.1 | 0.00171 |
ORF1ab/nsp3 | 1104 | N1104N | aaC | aaT | 18 | 18 | AY.106 | 0.006028 |
ORF1ab/nsp3 | 1104 | N1104D | Aac | Gac | 18 | 18 | B.1.1.7 | 0.000016 |
ORF1ab/nsp3 | 1104 | N1104N | aaC | aaT | 18 | 18 | B.1.160 | 0.000561 |
ORF1ab/nsp3 | 1104 | N1104N | aaC | aaT | 18 | 18 | B.1.526 | 0.000423 |
ORF1ab/nsp3 | 1104 | N1104D | Aac | Gac | 17 | 17 | AY.42 | 0.000684 |
ORF1ab/nsp3 | 1104 | N1104N | aaC | aaT | 17 | 17 | AY.6 | 0.000699 |
ORF1ab/nsp3 | 1104 | N1104N | aaC | aaT | 17 | 17 | B.1.466.2 | 0.006651 |
ORF1ab/nsp3 | 1104 | N1104N | aaC | aaT | 17 | 17 | B.1.575 | 0.005158 |
ORF1ab/nsp3 | 1104 | N1104N | aaC | aaT | 17 | 17 | C.37 | 0.001973 |
ORF1ab/nsp3 | 1104 | N1104N | aaC | aaT | 16 | 16 | AY.100 | 0.000736 |
ORF1ab/nsp3 | 1104 | N1104N | aaC | aaT | 16 | 16 | AY.120 | 0.000595 |
ORF1ab/nsp3 | 1104 | N1104D | Aac | Gac | 16 | 16 | AY.46.6 | 0.001155 |
ORF1ab/nsp3 | 1104 | N1104S | aAc | aGc | 16 | 16 | B.1 | 0.000147 |
ORF1ab/nsp3 | 1104 | N1104N | aaC | aaT | 16 | 16 | B.1.1.306 | 0.007014 |
ORF1ab/nsp3 | 1104 | N1104N | aaC | aaT | 16 | 16 | B.1.1.75 | 0.170213 |
ORF1ab/nsp3 | 1104 | N1104N | aaC | aaT | 15 | 15 | AY.119 | 0.00053 |
ORF1ab/nsp3 | 1104 | N1104N | aaC | aaT | 15 | 15 | AY.99.2 | 0.001382 |
ORF1ab/nsp3 | 1104 | N1104H | Aac | Cac | 15 | 15 | B.1.1.7 | 0.000013 |
ORF1ab/nsp3 | 1104 | N1104N | aaC | aaT | 15 | 15 | Q.8 | 0.002474 |
ORF1ab/nsp3 | 1104 | N1104N | aaC | aaT | 14 | 14 | AY.23 | 0.000976 |
ORF1ab/nsp3 | 1104 | N1104N | aaC | aaT | 14 | 14 | AY.5 | 0.000289 |
ORF1ab/nsp3 | 1104 | N1104N | aaC | aaT | 14 | 14 | B.1.351 | 0.000416 |
ORF1ab/nsp3 | 1104 | N1104N | aaC | aaT | 14 | 14 | B.1.538 | 0.112903 |
ORF1ab/nsp3 | 1104 | N1104N | aaC | aaT | 14 | 14 | B.1.609 | 0.006711 |
ORF1ab/nsp3 | 1104 | N1104N | aaC | aaT | 13 | 13 | AY.113 | 0.001851 |
ORF1ab/nsp3 | 1104 | N1104Y | Aac | Tac | 13 | 13 | AY.25 | 0.000078 |
ORF1ab/nsp3 | 1104 | N1104Y | Aac | Tac | 13 | 13 | AY.26 | 0.000368 |
ORF1ab/nsp3 | 1104 | N1104K | aaC | aaA | 13 | 13 | AY.44 | 0.000079 |
ORF1ab/nsp3 | 1104 | N1104N | aaC | aaT | 13 | 13 | B.1.1.297 | 0.029083 |
ORF1ab/nsp3 | 1104 | N1104N | aaC | aaT | 12 | 12 | B.1.36 | 0.001751 |
ORF1ab/nsp3 | 1104 | N1104T | aAc | aCc | 8 | 11 | All | 0.000002 |
ORF1ab/nsp3 | 1104 | N1104T | aAC | aCA | 3 | 11 | All | 0.000001 |
ORF1ab/nsp3 | 1104 | N1104N | aaC | aaT | 11 | 11 | AY.120.1 | 0.003531 |
ORF1ab/nsp3 | 1104 | N1104N | aaC | aaT | 11 | 11 | P.1.14 | 0.000526 |
ORF1ab/nsp3 | 1104 | N1104I | aAc | aTc | 8 | 10 | All | 0.000002 |
ORF1ab/nsp3 | 1104 | N1104I | aAC | aTA | 1 | 10 | All | 0 |
ORF1ab/nsp3 | 1104 | N1104I | aAC | aTT | 1 | 10 | All | 0 |
ORF1ab/nsp3 | 1104 | N1104N | aaC | aaT | 10 | 10 | AY.3.1 | 0.000853 |
ORF1ab/nsp3 | 1104 | N1104N | aaC | aaT | 10 | 10 | AY.70 | 0.002085 |
ORF1ab/nsp3 | 1104 | N1104N | aaC | aaT | 10 | 10 | AY.9.2 | 0.000367 |
ORF1ab/nsp3 | 1104 | N1104N | aaC | aaT | 10 | 10 | B.1.177.86 | 0.001835 |
ORF1ab/nsp3 | 1104 | N1104N | aaC | aaT | 10 | 10 | B.1.36.18 | 0.004202 |
ORF1ab/nsp3 | 1104 | N1104N | aaC | aaT | 10 | 10 | P.1.15 | 0.002323 |
ORF1ab/nsp3 | 1104 | N1104K | aaC | aaA | 9 | 9 | B.1 | 0.000082 |
ORF1ab/nsp3 | 1104 | N1104S | aAc | aGc | 9 | 9 | B.1.429 | 0.000212 |
ORF1ab/nsp3 | 1104 | N1104S | aAc | aGc | 8 | 8 | AY.44 | 0.000049 |
ORF1ab/nsp3 | 1104 | N1104H | Aac | Cac | 8 | 8 | AY.63 | 0.003095 |
ORF1ab/nsp3 | 1104 | N1104N | aaC | aaT | 8 | 8 | AY.7 | 0.001568 |
ORF1ab/nsp3 | 1104 | N1104S | aAc | aGc | 8 | 8 | B.1.1.359 | 0.222222 |
ORF1ab/nsp3 | 1104 | N1104N | aaC | aaT | 8 | 8 | B.1.258.17 | 0.000832 |
ORF1ab/nsp3 | 1104 | N1104N | aaC | aaT | 8 | 8 | B.1.36.31 | 0.014011 |
ORF1ab/nsp3 | 1104 | N1104N | aaC | aaT | 8 | 8 | B.1.617.1 | 0.001032 |
ORF1ab/nsp3 | 1104 | N1104N | aaC | aaT | 7 | 7 | AY.37 | 0.002212 |
ORF1ab/nsp3 | 1104 | N1104N | aaC | aaT | 7 | 7 | AY.4.2.1 | 0.001043 |
ORF1ab/nsp3 | 1104 | N1104N | aaC | aaT | 7 | 7 | AY.46 | 0.000729 |
ORF1ab/nsp3 | 1104 | N1104N | aaC | aaT | 7 | 7 | AY.85 | 0.00299 |
ORF1ab/nsp3 | 1104 | N1104N | aaC | aaT | 7 | 7 | AY.9.1 | 0.000586 |
ORF1ab/nsp3 | 1104 | N1104N | aaC | aaT | 7 | 7 | AY.92 | 0.002011 |
ORF1ab/nsp3 | 1104 | N1104K | aaC | aaA | 7 | 7 | B.1.1.282 | 0.081395 |
ORF1ab/nsp3 | 1104 | N1104N | aaC | aaT | 7 | 7 | B.1.177.12 | 0.001062 |
ORF1ab/nsp3 | 1104 | N1104N | aaC | aaT | 7 | 7 | B.1.177.21 | 0.000535 |
ORF1ab/nsp3 | 1104 | N1104N | aaC | aaT | 7 | 7 | B.1.177.65 | 0.004657 |
ORF1ab/nsp3 | 1104 | N1104S | aAc | aGc | 7 | 7 | B.1.177.73 | 0.003964 |
ORF1ab/nsp3 | 1104 | N1104N | aaC | aaT | 7 | 7 | D.2 | 0.000525 |
ORF1ab/nsp3 | 1104 | N1104R | AAC | CGA | 3 | 6 | All | 0.000001 |
ORF1ab/nsp3 | 1104 | N1104R | aAC | aGA | 2 | 6 | All | 0 |
ORF1ab/nsp3 | 1104 | N1104R | AAc | CGc | 1 | 6 | All | 0 |
ORF1ab/nsp3 | 1104 | N1104N | aaC | aaT | 6 | 6 | AY.121 | 0.000812 |
ORF1ab/nsp3 | 1104 | N1104N | aaC | aaT | 6 | 6 | AY.27 | 0.000388 |
ORF1ab/nsp3 | 1104 | N1104N | aaC | aaT | 6 | 6 | AY.4.2 | 0.00013 |
ORF1ab/nsp3 | 1104 | N1104N | aaC | aaT | 6 | 6 | AY.42 | 0.000241 |
ORF1ab/nsp3 | 1104 | N1104N | aaC | aaT | 6 | 6 | AY.98 | 0.000474 |
ORF1ab/nsp3 | 1104 | N1104N | aaC | aaT | 6 | 6 | B | 0.000767 |
ORF1ab/nsp3 | 1104 | N1104N | aaC | aaT | 6 | 6 | B.1.1.376 | 0.035714 |
ORF1ab/nsp3 | 1104 | N1104K | aaC | aaA | 6 | 6 | B.1.1.442 | 0.111111 |
ORF1ab/nsp3 | 1104 | N1104N | aaC | aaT | 6 | 6 | B.1.351.2 | 0.001815 |
ORF1ab/nsp3 | 1104 | N1104D | Aac | Gac | 6 | 6 | B.1.526 | 0.000141 |
ORF1ab/nsp3 | 1104 | N1104N | aaC | aaT | 6 | 6 | B.1.621 | 0.000531 |
ORF1ab/nsp3 | 1104 | N1104del2 | AAC | --N | 2 | 5 | All | 0 |
ORF1ab/nsp3 | 1104 | N1104del2 | aAC | a-- | 2 | 5 | All | 0 |
ORF1ab/nsp3 | 1104 | N1104del2 | AAc | --c | 1 | 5 | All | 0 |
ORF1ab/nsp3 | 1104 | N1104N | aaC | aaT | 5 | 5 | AY.14 | 0.00044 |
ORF1ab/nsp3 | 1104 | N1104N | aaC | aaT | 5 | 5 | AY.39.1 | 0.000198 |
ORF1ab/nsp3 | 1104 | N1104K | aaC | aaA | 5 | 5 | AY.5 | 0.000103 |
ORF1ab/nsp3 | 1104 | N1104N | aaC | aaT | 5 | 5 | AY.58 | 0.004537 |
ORF1ab/nsp3 | 1104 | N1104H | Aac | Cac | 5 | 5 | AY.58 | 0.004537 |
ORF1ab/nsp3 | 1104 | N1104N | aaC | aaT | 5 | 5 | AY.75 | 0.00028 |
ORF1ab/nsp3 | 1104 | N1104N | aaC | aaT | 5 | 5 | AY.75.1 | 0.000902 |
ORF1ab/nsp3 | 1104 | N1104N | aaC | aaT | 5 | 5 | AY.77 | 0.005637 |
ORF1ab/nsp3 | 1104 | N1104N | aaC | aaT | 5 | 5 | B.1.1.28 | 0.001556 |
ORF1ab/nsp3 | 1104 | N1104N | aaC | aaT | 5 | 5 | B.1.1.63 | 0.001929 |
ORF1ab/nsp3 | 1104 | N1104K | aaC | aaA | 5 | 5 | B.1.1.7 | 0.000004 |
ORF1ab/nsp3 | 1104 | N1104S | aAc | aGc | 5 | 5 | B.1.595.3 | 0.131579 |
ORF1ab/nsp3 | 1104 | N1104N | aaC | aaT | 5 | 5 | N.5 | 0.008834 |
ORF1ab/nsp3 | 1104 | N1104T | aAC | aCA | 2 | 4 | 0.111111 | |
ORF1ab/nsp3 | 1104 | N1104T | aAc | aCc | 2 | 4 | 0.111111 | |
ORF1ab/nsp3 | 1104 | N1104N | aaC | aaT | 4 | 4 | AY.39.1.1 | 0.002899 |
ORF1ab/nsp3 | 1104 | N1104N | aaC | aaT | 4 | 4 | AY.4.4 | 0.001637 |
ORF1ab/nsp3 | 1104 | N1104N | aaC | aaT | 4 | 4 | AY.61 | 0.000419 |
ORF1ab/nsp3 | 1104 | N1104N | aaC | aaT | 4 | 4 | AY.99 | 0.004197 |
ORF1ab/nsp3 | 1104 | N1104del | AAC | --- | 4 | 4 | B.1.1 | 0.000073 |
ORF1ab/nsp3 | 1104 | N1104K | aaC | aaA | 4 | 4 | B.1.1.176 | 0.001757 |
ORF1ab/nsp3 | 1104 | N1104N | aaC | aaT | 4 | 4 | B.1.1.214 | 0.000222 |
ORF1ab/nsp3 | 1104 | N1104N | aaC | aaT | 4 | 4 | B.1.1.25 | 0.002274 |
ORF1ab/nsp3 | 1104 | N1104N | aaC | aaT | 4 | 4 | B.1.1.284 | 0.00043 |
ORF1ab/nsp3 | 1104 | N1104N | aaC | aaT | 4 | 4 | B.1.1.39 | 0.002039 |
ORF1ab/nsp3 | 1104 | N1104N | aaC | aaT | 4 | 4 | B.1.177.32 | 0.005398 |
ORF1ab/nsp3 | 1104 | N1104D | Aac | Gac | 4 | 4 | B.1.2 | 0.000035 |
ORF1ab/nsp3 | 1104 | N1104N | aaC | aaT | 4 | 4 | B.1.234 | 0.000528 |
ORF1ab/nsp3 | 1104 | N1104N | aaC | aaT | 4 | 4 | B.1.525 | 0.000453 |
ORF1ab/nsp3 | 1104 | N1104N | aaC | aaT | 4 | 4 | B.1.558 | 0.018265 |
ORF1ab/nsp3 | 1104 | N1104del | AAC | --- | 4 | 4 | B.1.617.2 | 0.000015 |
ORF1ab/nsp3 | 1104 | N1104N | aaC | aaT | 4 | 4 | B.6 | 0.00364 |
ORF1ab/nsp3 | 1104 | N1104N | aaC | aaT | 3 | 3 | AY.110 | 0.000338 |
ORF1ab/nsp3 | 1104 | N1104S | aAc | aGc | 3 | 3 | AY.116.1 | 0.000934 |
ORF1ab/nsp3 | 1104 | N1104N | aaC | aaT | 3 | 3 | AY.117 | 0.000254 |
ORF1ab/nsp3 | 1104 | N1104D | Aac | Gac | 3 | 3 | AY.14 | 0.000264 |
ORF1ab/nsp3 | 1104 | N1104N | aaC | aaT | 3 | 3 | AY.16.1 | 0.00141 |
ORF1ab/nsp3 | 1104 | N1104N | aaC | aaT | 3 | 3 | AY.24 | 0.001293 |
ORF1ab/nsp3 | 1104 | N1104del | AAC | --- | 3 | 3 | AY.25 | 0.000018 |
ORF1ab/nsp3 | 1104 | N1104N | aaC | aaT | 3 | 3 | AY.35 | 0.000699 |
ORF1ab/nsp3 | 1104 | N1104N | aaC | aaT | 3 | 3 | AY.36 | 0.000445 |
ORF1ab/nsp3 | 1104 | N1104H | Aac | Cac | 3 | 3 | AY.4 | 0.000005 |
ORF1ab/nsp3 | 1104 | N1104H | Aac | Cac | 3 | 3 | AY.43 | 0.000013 |
ORF1ab/nsp3 | 1104 | N1104del | AAC | --- | 3 | 3 | AY.43 | 0.000013 |
ORF1ab/nsp3 | 1104 | N1104N | aaC | aaT | 3 | 3 | AY.45 | 0.000365 |
ORF1ab/nsp3 | 1104 | N1104K | aaC | aaA | 3 | 3 | AZ.2 | 0.002463 |
ORF1ab/nsp3 | 1104 | N1104del | AAC | --- | 3 | 3 | B.1 | 0.000027 |
ORF1ab/nsp3 | 1104 | N1104N | aaC | aaT | 3 | 3 | B.1.1.1 | 0.00098 |
ORF1ab/nsp3 | 1104 | N1104N | aaC | aaT | 3 | 3 | B.1.1.111 | 0.044118 |
ORF1ab/nsp3 | 1104 | N1104N | aaC | aaT | 3 | 3 | B.1.1.301 | 0.003538 |
ORF1ab/nsp3 | 1104 | N1104K | aaC | aaA | 3 | 3 | B.1.1.318 | 0.000905 |
ORF1ab/nsp3 | 1104 | N1104N | aaC | aaT | 3 | 3 | B.1.1.348 | 0.002389 |
ORF1ab/nsp3 | 1104 | N1104N | aaC | aaT | 3 | 3 | B.1.177.16 | 0.001993 |
ORF1ab/nsp3 | 1104 | N1104N | aaC | aaT | 3 | 3 | B.1.177.6 | 0.00293 |
ORF1ab/nsp3 | 1104 | N1104N | aaC | aaT | 3 | 3 | B.1.177.60 | 0.000655 |
ORF1ab/nsp3 | 1104 | N1104N | aaC | aaT | 3 | 3 | B.1.265 | 0.003812 |
ORF1ab/nsp3 | 1104 | N1104N | aaC | aaT | 3 | 3 | B.1.362 | 0.004622 |
ORF1ab/nsp3 | 1104 | N1104N | aaC | aaT | 3 | 3 | B.1.377 | 0.013699 |
ORF1ab/nsp3 | 1104 | N1104N | aaC | aaT | 3 | 3 | B.1.400 | 0.001287 |
ORF1ab/nsp3 | 1104 | N1104N | aaC | aaT | 3 | 3 | B.1.438.1 | 0.000322 |
ORF1ab/nsp3 | 1104 | N1104N | aaC | aaT | 3 | 3 | B.1.568 | 0.003333 |
ORF1ab/nsp3 | 1104 | N1104N | aaC | aaT | 3 | 3 | B.1.612 | 0.007958 |
ORF1ab/nsp3 | 1104 | N1104N | aaC | aaT | 3 | 3 | B.1.631 | 0.010101 |
ORF1ab/nsp3 | 1104 | N1104S | aAc | aGc | 3 | 3 | C.37 | 0.000348 |
ORF1ab/nsp3 | 1104 | N1104N | aaC | aaT | 3 | 3 | W.2 | 0.014493 |
ORF1ab/nsp3 | 1104 | N1104H | Aac | Cac | 2 | 2 | 0.111111 | |
ORF1ab/nsp3 | 1104 | N1104S | aAc | aGc | 2 | 2 | 0.111111 | |
ORF1ab/nsp3 | 1104 | N1104F | AAc | TTc | 2 | 2 | 0.111111 | |
ORF1ab/nsp3 | 1104 | N1104R | aAC | aGA | 2 | 2 | 0.111111 | |
ORF1ab/nsp3 | 1104 | N1104K | aaC | aaA | 2 | 2 | 0.111111 | |
ORF1ab/nsp3 | 1104 | N1104N | aaC | aaT | 2 | 2 | AB.1 | 0.016393 |
ORF1ab/nsp3 | 1104 | N1104F | AAc | TTc | 2 | 2 | All | 0 |
ORF1ab/nsp3 | 1104 | N1104del1 | AaC | -aN | 1 | 2 | All | 0 |
ORF1ab/nsp3 | 1104 | N1104del1 | AaC | -aT | 1 | 2 | All | 0 |
ORF1ab/nsp3 | 1104 | N1104N | aaC | aaT | 2 | 2 | AM.4 | 0.007143 |
ORF1ab/nsp3 | 1104 | N1104S | aAc | aGc | 2 | 2 | AY.102 | 0.000053 |
ORF1ab/nsp3 | 1104 | N1104N | aaC | aaT | 2 | 2 | AY.107 | 0.000932 |
ORF1ab/nsp3 | 1104 | N1104N | aaC | aaT | 2 | 2 | AY.114 | 0.000462 |
ORF1ab/nsp3 | 1104 | N1104N | aaC | aaT | 2 | 2 | AY.116 | 0.000574 |
ORF1ab/nsp3 | 1104 | N1104N | aaC | aaT | 2 | 2 | AY.116.1 | 0.000623 |
ORF1ab/nsp3 | 1104 | N1104K | aaC | aaA | 2 | 2 | AY.26 | 0.000057 |
ORF1ab/nsp3 | 1104 | N1104S | aAc | aGc | 2 | 2 | AY.26 | 0.000057 |
ORF1ab/nsp3 | 1104 | N1104N | aaC | aaT | 2 | 2 | AY.32 | 0.001065 |
ORF1ab/nsp3 | 1104 | N1104N | aaC | aaT | 2 | 2 | AY.33 | 0.000134 |
ORF1ab/nsp3 | 1104 | N1104N | aaC | aaT | 2 | 2 | AY.38 | 0.000999 |
ORF1ab/nsp3 | 1104 | N1104del | AAC | --- | 2 | 2 | AY.4.5 | 0.000215 |
ORF1ab/nsp3 | 1104 | N1104del | AAC | --- | 2 | 2 | AY.44 | 0.000012 |
ORF1ab/nsp3 | 1104 | N1104N | aaC | aaT | 2 | 2 | AY.46.6 | 0.000144 |
ORF1ab/nsp3 | 1104 | N1104H | Aac | Cac | 2 | 2 | AY.61 | 0.00021 |
ORF1ab/nsp3 | 1104 | N1104D | Aac | Gac | 2 | 2 | AY.70 | 0.000417 |
ORF1ab/nsp3 | 1104 | N1104N | aaC | aaT | 2 | 2 | AY.71 | 0.00095 |
ORF1ab/nsp3 | 1104 | N1104N | aaC | aaT | 2 | 2 | AY.74 | 0.000231 |
ORF1ab/nsp3 | 1104 | N1104N | aaC | aaT | 2 | 2 | AY.82 | 0.002714 |
ORF1ab/nsp3 | 1104 | N1104N | aaC | aaT | 2 | 2 | AY.95 | 0.001522 |
ORF1ab/nsp3 | 1104 | N1104D | Aac | Gac | 2 | 2 | B.1 | 0.000018 |
ORF1ab/nsp3 | 1104 | N1104S | aAc | aGc | 2 | 2 | B.1.1 | 0.000036 |
ORF1ab/nsp3 | 1104 | N1104H | AaC | CaT | 1 | 2 | B.1.1 | 0.000018 |
ORF1ab/nsp3 | 1104 | N1104H | Aac | Cac | 1 | 2 | B.1.1 | 0.000018 |
ORF1ab/nsp3 | 1104 | N1104I | aAC | aTA | 1 | 2 | B.1.1 | 0.000018 |
ORF1ab/nsp3 | 1104 | N1104I | aAC | aTT | 1 | 2 | B.1.1 | 0.000018 |
ORF1ab/nsp3 | 1104 | N1104N | aaC | aaT | 2 | 2 | B.1.1.157 | 0.001826 |
ORF1ab/nsp3 | 1104 | N1104N | aaC | aaT | 2 | 2 | B.1.1.216 | 0.001781 |
ORF1ab/nsp3 | 1104 | N1104K | aaC | aaA | 2 | 2 | B.1.1.222 | 0.000408 |
ORF1ab/nsp3 | 1104 | N1104N | aaC | aaT | 2 | 2 | B.1.1.434 | 0.000697 |
ORF1ab/nsp3 | 1104 | N1104N | aaC | aaT | 2 | 2 | B.1.1.58 | 0.010753 |
ORF1ab/nsp3 | 1104 | N1104N | aaC | aaT | 2 | 2 | B.1.157 | 0.00597 |
ORF1ab/nsp3 | 1104 | N1104S | aAc | aGc | 2 | 2 | B.1.160 | 0.000062 |
ORF1ab/nsp3 | 1104 | N1104I | aAc | aTc | 2 | 2 | B.1.160 | 0.000062 |
ORF1ab/nsp3 | 1104 | N1104N | aaC | aaT | 2 | 2 | B.1.160.9 | 0.014388 |
ORF1ab/nsp3 | 1104 | N1104N | aaC | aaT | 2 | 2 | B.1.162 | 0.01005 |
ORF1ab/nsp3 | 1104 | N1104D | Aac | Gac | 2 | 2 | B.1.177 | 0.000026 |
ORF1ab/nsp3 | 1104 | N1104del | AAC | --- | 2 | 2 | B.1.177 | 0.000026 |
ORF1ab/nsp3 | 1104 | N1104N | aaC | aaT | 2 | 2 | B.1.177.54 | 0.001213 |
ORF1ab/nsp3 | 1104 | N1104D | Aac | Gac | 2 | 2 | B.1.177.81 | 0.000379 |
ORF1ab/nsp3 | 1104 | N1104N | aaC | aaT | 2 | 2 | B.1.177.81 | 0.000379 |
ORF1ab/nsp3 | 1104 | N1104K | aaC | aaA | 2 | 2 | B.1.2 | 0.000018 |
ORF1ab/nsp3 | 1104 | N1104N | aaC | aaT | 2 | 2 | B.1.241 | 0.001623 |
ORF1ab/nsp3 | 1104 | N1104del | AAC | --- | 2 | 2 | B.1.258 | 0.000133 |
ORF1ab/nsp3 | 1104 | N1104N | aaC | aaT | 2 | 2 | B.1.258.22 | 0.005333 |
ORF1ab/nsp3 | 1104 | N1104del | AAC | --- | 2 | 2 | B.1.351 | 0.000059 |
ORF1ab/nsp3 | 1104 | N1104K | aaC | aaA | 2 | 2 | B.1.36 | 0.000292 |
ORF1ab/nsp3 | 1104 | N1104K | aaC | aaA | 2 | 2 | B.1.517 | 0.000854 |
ORF1ab/nsp3 | 1104 | N1104N | aaC | aaT | 2 | 2 | B.1.546 | 0.007407 |
ORF1ab/nsp3 | 1104 | N1104H | Aac | Cac | 2 | 2 | B.1.617.2 | 0.000008 |
ORF1ab/nsp3 | 1104 | N1104N | aaC | aaT | 2 | 2 | C.36.3 | 0.001134 |
ORF1ab/nsp3 | 1104 | N1104del | AAC | --- | 2 | 2 | C.37 | 0.000232 |
ORF1ab/nsp3 | 1104 | N1104del | AAC | --- | 2 | 2 | P.1 | 0.000032 |
ORF1ab/nsp3 | 1104 | N1104N | aaC | aaT | 2 | 2 | P.1.12 | 0.000968 |
ORF1ab/nsp3 | 1104 | N1104N | aaC | aaT | 2 | 2 | P.1.16 | 0.000748 |
ORF1ab/nsp3 | 1104 | N1104N | aaC | aaT | 2 | 2 | P.1.17 | 0.000324 |
ORF1ab/nsp3 | 1104 | N1104N | aaC | aaT | 2 | 2 | P.1.4 | 0.001953 |
ORF1ab/nsp3 | 1104 | N1104N | aaC | aaT | 2 | 2 | P.1.7 | 0.000639 |
ORF1ab/nsp3 | 1104 | N1104N | aaC | aaT | 2 | 2 | P.2 | 0.000373 |
ORF1ab/nsp3 | 1104 | N1104N | aaC | aaT | 2 | 2 | Q.1 | 0.000253 |
ORF1ab/nsp3 | 1104 | N1104K | aaC | aaG | 1 | 1 | A | 0.000387 |
ORF1ab/nsp3 | 1104 | N1104S | aAc | aGc | 1 | 1 | A | 0.000387 |
ORF1ab/nsp3 | 1104 | N1104N | aaC | aaT | 1 | 1 | A.1 | 0.000282 |
ORF1ab/nsp3 | 1104 | N1104N | aaC | aaT | 1 | 1 | A.19 | 0.009434 |
ORF1ab/nsp3 | 1104 | N1104N | aaC | aaT | 1 | 1 | A.23.1 | 0.000704 |
ORF1ab/nsp3 | 1104 | N1104N | aaC | aaT | 1 | 1 | A.25 | 0.018182 |
ORF1ab/nsp3 | 1104 | N1104N | aaC | aaT | 1 | 1 | AD.2 | 0.000219 |
ORF1ab/nsp3 | 1104 | N1104N | aaC | aaT | 1 | 1 | AE.7 | 0.083333 |
ORF1ab/nsp3 | 1104 | N1104L | AAc | CTc | 1 | 1 | All | 0 |
ORF1ab/nsp3 | 1104 | N1104Q | AaC | CaA | 1 | 1 | All | 0 |
ORF1ab/nsp3 | 1104 | N1104N | aaC | aaT | 1 | 1 | AW.1 | 0.003049 |
ORF1ab/nsp3 | 1104 | N1104Y | Aac | Tac | 1 | 1 | AY.102 | 0.000027 |
ORF1ab/nsp3 | 1104 | N1104D | Aac | Gac | 1 | 1 | AY.103 | 0.000006 |
ORF1ab/nsp3 | 1104 | N1104S | aAc | aGc | 1 | 1 | AY.103 | 0.000006 |
ORF1ab/nsp3 | 1104 | N1104N | aaC | aaT | 1 | 1 | AY.104 | 0.001984 |
ORF1ab/nsp3 | 1104 | N1104Y | Aac | Tac | 1 | 1 | AY.105 | 0.000643 |
ORF1ab/nsp3 | 1104 | N1104N | aaC | aaT | 1 | 1 | AY.108 | 0.001103 |
ORF1ab/nsp3 | 1104 | N1104N | aaC | aaT | 1 | 1 | AY.109 | 0.00074 |
ORF1ab/nsp3 | 1104 | N1104R | AAC | CGA | 1 | 1 | AY.113 | 0.000142 |
ORF1ab/nsp3 | 1104 | N1104D | Aac | Gac | 1 | 1 | AY.116 | 0.000287 |
ORF1ab/nsp3 | 1104 | N1104N | aaC | aaT | 1 | 1 | AY.12 | 0.000316 |
ORF1ab/nsp3 | 1104 | N1104N | aaC | aaT | 1 | 1 | AY.13 | 0.000161 |
ORF1ab/nsp3 | 1104 | N1104T | aAc | aCc | 1 | 1 | AY.14 | 0.000088 |
ORF1ab/nsp3 | 1104 | N1104N | aaC | aaT | 1 | 1 | AY.16 | 0.00038 |
ORF1ab/nsp3 | 1104 | N1104S | aAc | aGc | 1 | 1 | AY.20 | 0.000039 |
ORF1ab/nsp3 | 1104 | N1104N | aaC | aaT | 1 | 1 | AY.23.1 | 0.000417 |
ORF1ab/nsp3 | 1104 | N1104T | aAc | aCc | 1 | 1 | AY.26 | 0.000028 |
ORF1ab/nsp3 | 1104 | N1104K | aaC | aaG | 1 | 1 | AY.27 | 0.000065 |
ORF1ab/nsp3 | 1104 | N1104N | aaC | aaT | 1 | 1 | AY.29.1 | 0.000221 |
ORF1ab/nsp3 | 1104 | N1104S | aAC | aGT | 1 | 1 | AY.3 | 0.00001 |
ORF1ab/nsp3 | 1104 | N1104N | aaC | aaT | 1 | 1 | AY.30 | 0.000396 |
ORF1ab/nsp3 | 1104 | N1104H | Aac | Cac | 1 | 1 | AY.34.1 | 0.00051 |
ORF1ab/nsp3 | 1104 | N1104S | aAc | aGc | 1 | 1 | AY.35 | 0.000233 |
ORF1ab/nsp3 | 1104 | N1104S | aAc | aGc | 1 | 1 | AY.39 | 0.000025 |
ORF1ab/nsp3 | 1104 | N1104del2 | aAC | a-- | 1 | 1 | AY.4 | 0.000002 |
ORF1ab/nsp3 | 1104 | N1104Y | Aac | Tac | 1 | 1 | AY.4 | 0.000002 |
ORF1ab/nsp3 | 1104 | N1104I | aAc | aTc | 1 | 1 | AY.4 | 0.000002 |
ORF1ab/nsp3 | 1104 | N1104del | AAC | --- | 1 | 1 | AY.4.2 | 0.000022 |
ORF1ab/nsp3 | 1104 | N1104N | aaC | aaT | 1 | 1 | AY.4.3 | 0.000842 |
ORF1ab/nsp3 | 1104 | N1104N | aaC | aaT | 1 | 1 | AY.4.5 | 0.000107 |
ORF1ab/nsp3 | 1104 | N1104N | aaC | aaT | 1 | 1 | AY.40 | 0.000964 |
ORF1ab/nsp3 | 1104 | N1104S | aAc | aGc | 1 | 1 | AY.42 | 0.00004 |
ORF1ab/nsp3 | 1104 | N1104S | aAc | aGc | 1 | 1 | AY.43 | 0.000004 |
ORF1ab/nsp3 | 1104 | N1104K | aaC | aaA | 1 | 1 | AY.43 | 0.000004 |
ORF1ab/nsp3 | 1104 | N1104D | Aac | Gac | 1 | 1 | AY.43 | 0.000004 |
ORF1ab/nsp3 | 1104 | N1104T | aAc | aCc | 1 | 1 | AY.43 | 0.000004 |
ORF1ab/nsp3 | 1104 | N1104T | aAc | aCc | 1 | 1 | AY.44 | 0.000006 |
ORF1ab/nsp3 | 1104 | N1104R | AAC | CGA | 1 | 1 | AY.44 | 0.000006 |
ORF1ab/nsp3 | 1104 | N1104I | aAc | aTc | 1 | 1 | AY.44 | 0.000006 |
ORF1ab/nsp3 | 1104 | N1104S | aAc | aGc | 1 | 1 | AY.45 | 0.000122 |
ORF1ab/nsp3 | 1104 | N1104N | aaC | aaT | 1 | 1 | AY.46.5 | 0.000198 |
ORF1ab/nsp3 | 1104 | N1104del | AAC | --- | 1 | 1 | AY.46.6 | 0.000072 |
ORF1ab/nsp3 | 1104 | N1104S | aAc | aGc | 1 | 1 | AY.47 | 0.000031 |
ORF1ab/nsp3 | 1104 | N1104N | aaC | aaT | 1 | 1 | AY.48 | 0.000465 |
ORF1ab/nsp3 | 1104 | N1104S | aAc | aGc | 1 | 1 | AY.5 | 0.000021 |
ORF1ab/nsp3 | 1104 | N1104N | aaC | aaT | 1 | 1 | AY.5.3 | 0.000337 |
ORF1ab/nsp3 | 1104 | N1104del | AAC | --- | 1 | 1 | AY.52 | 0.000814 |
ORF1ab/nsp3 | 1104 | N1104S | aAc | aGc | 1 | 1 | AY.54 | 0.000095 |
ORF1ab/nsp3 | 1104 | N1104del | AAC | --- | 1 | 1 | AY.54 | 0.000095 |
ORF1ab/nsp3 | 1104 | N1104N | aaC | aaT | 1 | 1 | AY.55 | 0.000917 |
ORF1ab/nsp3 | 1104 | N1104del | AAC | --- | 1 | 1 | AY.61 | 0.000105 |
ORF1ab/nsp3 | 1104 | N1104K | aaC | aaA | 1 | 1 | AY.61 | 0.000105 |
ORF1ab/nsp3 | 1104 | N1104del | AAC | --- | 1 | 1 | AY.65 | 0.000533 |
ORF1ab/nsp3 | 1104 | N1104del | AAC | --- | 1 | 1 | AY.66 | 0.00107 |
ORF1ab/nsp3 | 1104 | N1104N | aaC | aaT | 1 | 1 | AY.7.1 | 0.000113 |
ORF1ab/nsp3 | 1104 | N1104del | AAC | --- | 1 | 1 | AY.71 | 0.000475 |
ORF1ab/nsp3 | 1104 | N1104Y | Aac | Tac | 1 | 1 | AY.75 | 0.000056 |
ORF1ab/nsp3 | 1104 | N1104H | Aac | Cac | 1 | 1 | AY.75.1 | 0.00018 |
ORF1ab/nsp3 | 1104 | N1104K | aaC | aaA | 1 | 1 | AY.8 | 0.000606 |
ORF1ab/nsp3 | 1104 | N1104L | AAc | CTc | 1 | 1 | AY.84 | 0.000437 |
ORF1ab/nsp3 | 1104 | N1104del | AAC | --- | 1 | 1 | AY.85 | 0.000427 |
ORF1ab/nsp3 | 1104 | N1104D | Aac | Gac | 1 | 1 | AY.87 | 0.000833 |
ORF1ab/nsp3 | 1104 | N1104D | Aac | Gac | 1 | 1 | AY.9.2 | 0.000037 |
ORF1ab/nsp3 | 1104 | N1104del | AAC | --- | 1 | 1 | AY.9.2 | 0.000037 |
ORF1ab/nsp3 | 1104 | N1104N | aaC | aaT | 1 | 1 | AY.93 | 0.000273 |
ORF1ab/nsp3 | 1104 | N1104K | aaC | aaA | 1 | 1 | AY.95 | 0.000761 |
ORF1ab/nsp3 | 1104 | N1104del1 | AaC | -aT | 1 | 1 | AY.99 | 0.001049 |
ORF1ab/nsp3 | 1104 | N1104N | aaC | aaT | 1 | 1 | AZ.2 | 0.000821 |
ORF1ab/nsp3 | 1104 | N1104R | AAC | CGA | 1 | 1 | B.1 | 0.000009 |
ORF1ab/nsp3 | 1104 | N1104I | aAc | aTc | 1 | 1 | B.1 | 0.000009 |
ORF1ab/nsp3 | 1104 | N1104H | Aac | Cac | 1 | 1 | B.1 | 0.000009 |
ORF1ab/nsp3 | 1104 | N1104Q | AaC | CaA | 1 | 1 | B.1.1 | 0.000018 |
ORF1ab/nsp3 | 1104 | N1104N | aaC | aaT | 1 | 1 | B.1.1.121 | 0.002427 |
ORF1ab/nsp3 | 1104 | N1104N | aaC | aaT | 1 | 1 | B.1.1.141 | 0.002012 |
ORF1ab/nsp3 | 1104 | N1104N | aaC | aaT | 1 | 1 | B.1.1.161 | 0.003534 |
ORF1ab/nsp3 | 1104 | N1104N | aaC | aaT | 1 | 1 | B.1.1.170 | 0.001247 |
ORF1ab/nsp3 | 1104 | N1104N | aaC | aaT | 1 | 1 | B.1.1.174 | 0.003378 |
ORF1ab/nsp3 | 1104 | N1104del2 | AAC | --N | 1 | 1 | B.1.1.207 | 0.001182 |
ORF1ab/nsp3 | 1104 | N1104del2 | aAC | a-- | 1 | 1 | B.1.1.216 | 0.00089 |
ORF1ab/nsp3 | 1104 | N1104D | Aac | Gac | 1 | 1 | B.1.1.218 | 0.007692 |
ORF1ab/nsp3 | 1104 | N1104S | aAc | aGc | 1 | 1 | B.1.1.222 | 0.000204 |
ORF1ab/nsp3 | 1104 | N1104N | aaC | aaT | 1 | 1 | B.1.1.265 | 0.003155 |
ORF1ab/nsp3 | 1104 | N1104N | aaC | aaT | 1 | 1 | B.1.1.269 | 0.001353 |
ORF1ab/nsp3 | 1104 | N1104N | aaC | aaT | 1 | 1 | B.1.1.277 | 0.000759 |
ORF1ab/nsp3 | 1104 | N1104N | aaC | aaT | 1 | 1 | B.1.1.279 | 0.001121 |
ORF1ab/nsp3 | 1104 | N1104N | aaC | aaT | 1 | 1 | B.1.1.288 | 0.001916 |
ORF1ab/nsp3 | 1104 | N1104N | aaC | aaT | 1 | 1 | B.1.1.290 | 0.018182 |
ORF1ab/nsp3 | 1104 | N1104N | aaC | aaT | 1 | 1 | B.1.1.303 | 0.002762 |
ORF1ab/nsp3 | 1104 | N1104del | AAC | --- | 1 | 1 | B.1.1.311 | 0.000358 |
ORF1ab/nsp3 | 1104 | N1104N | aaC | aaT | 1 | 1 | B.1.1.328 | 0.016949 |
ORF1ab/nsp3 | 1104 | N1104N | aaC | aaT | 1 | 1 | B.1.1.33 | 0.000421 |
ORF1ab/nsp3 | 1104 | N1104del | AAC | --- | 1 | 1 | B.1.1.348 | 0.000796 |
ORF1ab/nsp3 | 1104 | N1104N | aaC | aaT | 1 | 1 | B.1.1.351 | 0.002793 |
ORF1ab/nsp3 | 1104 | N1104N | aaC | aaT | 1 | 1 | B.1.1.363 | 0.005988 |
ORF1ab/nsp3 | 1104 | N1104N | aaC | aaT | 1 | 1 | B.1.1.369 | 0.000446 |
ORF1ab/nsp3 | 1104 | N1104N | aaC | aaT | 1 | 1 | B.1.1.396 | 0.045455 |
ORF1ab/nsp3 | 1104 | N1104N | aaC | aaT | 1 | 1 | B.1.1.397 | 0.002252 |
ORF1ab/nsp3 | 1104 | N1104N | aaC | aaT | 1 | 1 | B.1.1.402 | 0.011111 |
ORF1ab/nsp3 | 1104 | N1104del | AAC | --- | 1 | 1 | B.1.1.409 | 0.002833 |
ORF1ab/nsp3 | 1104 | N1104N | aaC | aaT | 1 | 1 | B.1.1.487 | 0.005587 |
ORF1ab/nsp3 | 1104 | N1104N | aaC | aaT | 1 | 1 | B.1.1.54 | 0.003021 |
ORF1ab/nsp3 | 1104 | N1104Y | Aac | Tac | 1 | 1 | B.1.1.7 | 0.000001 |
ORF1ab/nsp3 | 1104 | N1104del1 | AaC | -aN | 1 | 1 | B.1.1.7 | 0.000001 |
ORF1ab/nsp3 | 1104 | N1104del2 | AAC | --N | 1 | 1 | B.1.1.7 | 0.000001 |
ORF1ab/nsp3 | 1104 | N1104N | aaC | aaT | 1 | 1 | B.1.128 | 0.000635 |
ORF1ab/nsp3 | 1104 | N1104N | aaC | aaT | 1 | 1 | B.1.139 | 0.000733 |
ORF1ab/nsp3 | 1104 | N1104N | aaC | aaT | 1 | 1 | B.1.147 | 0.000756 |
ORF1ab/nsp3 | 1104 | N1104N | aaC | aaT | 1 | 1 | B.1.160.14 | 0.002119 |
ORF1ab/nsp3 | 1104 | N1104I | aAc | aTc | 1 | 1 | B.1.160.16 | 0.000929 |
ORF1ab/nsp3 | 1104 | N1104N | aaC | aaT | 1 | 1 | B.1.165 | 0.011905 |
ORF1ab/nsp3 | 1104 | N1104N | aaC | aaT | 1 | 1 | B.1.170 | 0.00431 |
ORF1ab/nsp3 | 1104 | N1104H | Aac | Cac | 1 | 1 | B.1.177 | 0.000013 |
ORF1ab/nsp3 | 1104 | N1104I | aAc | aTc | 1 | 1 | B.1.177 | 0.000013 |
ORF1ab/nsp3 | 1104 | N1104K | aaC | aaA | 1 | 1 | B.1.177 | 0.000013 |
ORF1ab/nsp3 | 1104 | N1104N | aaC | aaT | 1 | 1 | B.1.177.23 | 0.003236 |
ORF1ab/nsp3 | 1104 | N1104N | aaC | aaT | 1 | 1 | B.1.177.24 | 0.001295 |
ORF1ab/nsp3 | 1104 | N1104del | AAC | --- | 1 | 1 | B.1.177.32 | 0.00135 |
ORF1ab/nsp3 | 1104 | N1104N | aaC | aaT | 1 | 1 | B.1.177.33 | 0.001645 |
ORF1ab/nsp3 | 1104 | N1104S | aAc | aGc | 1 | 1 | B.1.177.44 | 0.000519 |
ORF1ab/nsp3 | 1104 | N1104I | aAc | aTc | 1 | 1 | B.1.177.44 | 0.000519 |
ORF1ab/nsp3 | 1104 | N1104del | AAC | --- | 1 | 1 | B.1.177.51 | 0.004566 |
ORF1ab/nsp3 | 1104 | N1104D | Aac | Gac | 1 | 1 | B.1.177.56 | 0.000668 |
ORF1ab/nsp3 | 1104 | N1104N | aaC | aaT | 1 | 1 | B.1.177.57 | 0.000281 |
ORF1ab/nsp3 | 1104 | N1104N | aaC | aaT | 1 | 1 | B.1.177.7 | 0.000165 |
ORF1ab/nsp3 | 1104 | N1104N | aaC | aaT | 1 | 1 | B.1.177.83 | 0.001481 |
ORF1ab/nsp3 | 1104 | N1104N | aaC | aaT | 1 | 1 | B.1.177.87 | 0.000728 |
ORF1ab/nsp3 | 1104 | N1104del | AAC | --- | 1 | 1 | B.1.2 | 0.000009 |
ORF1ab/nsp3 | 1104 | N1104T | aAC | aCA | 1 | 1 | B.1.2 | 0.000009 |
ORF1ab/nsp3 | 1104 | N1104N | aaC | aaT | 1 | 1 | B.1.210 | 0.002132 |
ORF1ab/nsp3 | 1104 | N1104N | aaC | aaT | 1 | 1 | B.1.211 | 0.025 |
ORF1ab/nsp3 | 1104 | N1104N | aaC | aaT | 1 | 1 | B.1.214.2 | 0.0006 |
ORF1ab/nsp3 | 1104 | N1104N | aaC | aaT | 1 | 1 | B.1.219 | 0.009434 |
ORF1ab/nsp3 | 1104 | N1104N | aaC | aaT | 1 | 1 | B.1.221.1 | 0.002907 |
ORF1ab/nsp3 | 1104 | N1104N | aaC | aaT | 1 | 1 | B.1.239 | 0.001221 |
ORF1ab/nsp3 | 1104 | N1104K | aaC | aaA | 1 | 1 | B.1.252 | 0.006623 |
ORF1ab/nsp3 | 1104 | N1104N | aaC | aaT | 1 | 1 | B.1.279 | 0.000514 |
ORF1ab/nsp3 | 1104 | N1104N | aaC | aaT | 1 | 1 | B.1.311 | 0.000275 |
ORF1ab/nsp3 | 1104 | N1104N | aaC | aaT | 1 | 1 | B.1.320 | 0.001245 |
ORF1ab/nsp3 | 1104 | N1104N | aaC | aaT | 1 | 1 | B.1.325 | 0.006897 |
ORF1ab/nsp3 | 1104 | N1104D | Aac | Gac | 1 | 1 | B.1.340 | 0.004292 |
ORF1ab/nsp3 | 1104 | N1104K | aaC | aaG | 1 | 1 | B.1.351 | 0.00003 |
ORF1ab/nsp3 | 1104 | N1104N | aaC | aaT | 1 | 1 | B.1.36.19 | 0.009259 |
ORF1ab/nsp3 | 1104 | N1104K | aaC | aaA | 1 | 1 | B.1.36.8 | 0.001 |
ORF1ab/nsp3 | 1104 | N1104N | aaC | aaT | 1 | 1 | B.1.36.8 | 0.001 |
ORF1ab/nsp3 | 1104 | N1104S | aAc | aGc | 1 | 1 | B.1.367 | 0.000792 |
ORF1ab/nsp3 | 1104 | N1104N | aaC | aaT | 1 | 1 | B.1.367 | 0.000792 |
ORF1ab/nsp3 | 1104 | N1104H | Aac | Cac | 1 | 1 | B.1.371 | 0.001122 |
ORF1ab/nsp3 | 1104 | N1104N | aaC | aaT | 1 | 1 | B.1.403 | 0.003268 |
ORF1ab/nsp3 | 1104 | N1104del | AAC | --- | 1 | 1 | B.1.416.1 | 0.001563 |
ORF1ab/nsp3 | 1104 | N1104N | aaC | aaT | 1 | 1 | B.1.420 | 0.010417 |
ORF1ab/nsp3 | 1104 | N1104N | aaC | aaT | 1 | 1 | B.1.426 | 0.001009 |
ORF1ab/nsp3 | 1104 | N1104H | Aac | Cac | 1 | 1 | B.1.427 | 0.00005 |
ORF1ab/nsp3 | 1104 | N1104D | Aac | Gac | 1 | 1 | B.1.427 | 0.00005 |
ORF1ab/nsp3 | 1104 | N1104N | aaC | aaT | 1 | 1 | B.1.439 | 0.005917 |
ORF1ab/nsp3 | 1104 | N1104N | aaC | aaT | 1 | 1 | B.1.44 | 0.008333 |
ORF1ab/nsp3 | 1104 | N1104S | aAc | aGc | 1 | 1 | B.1.470 | 0.001404 |
ORF1ab/nsp3 | 1104 | N1104N | aaC | aaT | 1 | 1 | B.1.474 | 0.001901 |
ORF1ab/nsp3 | 1104 | N1104N | aaC | aaT | 1 | 1 | B.1.480 | 0.002488 |
ORF1ab/nsp3 | 1104 | N1104del2 | AAc | --c | 1 | 1 | B.1.487 | 0.019608 |
ORF1ab/nsp3 | 1104 | N1104N | aaC | aaT | 1 | 1 | B.1.516 | 0.001957 |
ORF1ab/nsp3 | 1104 | N1104del | AAC | --- | 1 | 1 | B.1.526 | 0.000024 |
ORF1ab/nsp3 | 1104 | N1104N | aaC | aaT | 1 | 1 | B.1.551 | 0.00129 |
ORF1ab/nsp3 | 1104 | N1104N | aaC | aaT | 1 | 1 | B.1.576 | 0.000907 |
ORF1ab/nsp3 | 1104 | N1104N | aaC | aaT | 1 | 1 | B.1.580 | 0.004065 |
ORF1ab/nsp3 | 1104 | N1104N | aaC | aaT | 1 | 1 | B.1.582 | 0.000491 |
ORF1ab/nsp3 | 1104 | N1104N | aaC | aaT | 1 | 1 | B.1.588 | 0.00091 |
ORF1ab/nsp3 | 1104 | N1104N | aaC | aaT | 1 | 1 | B.1.589 | 0.007576 |
ORF1ab/nsp3 | 1104 | N1104S | aAc | aGc | 1 | 1 | B.1.596 | 0.000087 |
ORF1ab/nsp3 | 1104 | N1104D | Aac | Gac | 1 | 1 | B.1.617.1 | 0.000129 |
ORF1ab/nsp3 | 1104 | N1104S | aAc | aGc | 1 | 1 | B.1.617.1 | 0.000129 |
ORF1ab/nsp3 | 1104 | N1104R | AAc | CGc | 1 | 1 | B.1.617.1 | 0.000129 |
ORF1ab/nsp3 | 1104 | N1104S | aAc | aGc | 1 | 1 | B.1.617.2 | 0.000004 |
ORF1ab/nsp3 | 1104 | N1104T | aAc | aCc | 1 | 1 | B.1.617.2 | 0.000004 |
ORF1ab/nsp3 | 1104 | N1104K | aaC | aaA | 1 | 1 | B.1.621 | 0.000089 |
ORF1ab/nsp3 | 1104 | N1104N | aaC | aaT | 1 | 1 | B.1.625 | 0.002353 |
ORF1ab/nsp3 | 1104 | N1104N | aaC | aaT | 1 | 1 | B.1.76 | 0.011364 |
ORF1ab/nsp3 | 1104 | N1104N | aaC | aaT | 1 | 1 | B.1.9 | 0.006173 |
ORF1ab/nsp3 | 1104 | N1104N | aaC | aaT | 1 | 1 | B.1.91 | 0.002075 |
ORF1ab/nsp3 | 1104 | N1104N | aaC | aaT | 1 | 1 | B.1.94 | 0.027027 |
ORF1ab/nsp3 | 1104 | N1104N | aaC | aaT | 1 | 1 | B.10 | 0.008264 |
ORF1ab/nsp3 | 1104 | N1104del | AAC | --- | 1 | 1 | B.15 | 0.017544 |
ORF1ab/nsp3 | 1104 | N1104N | aaC | aaT | 1 | 1 | B.40 | 0.000364 |
ORF1ab/nsp3 | 1104 | N1104N | aaC | aaT | 1 | 1 | C.16 | 0.00106 |
ORF1ab/nsp3 | 1104 | N1104N | aaC | aaT | 1 | 1 | C.18 | 0.002591 |
ORF1ab/nsp3 | 1104 | N1104K | aaC | aaA | 1 | 1 | C.35 | 0.000774 |
ORF1ab/nsp3 | 1104 | N1104del | AAC | --- | 1 | 1 | C.35 | 0.000774 |
ORF1ab/nsp3 | 1104 | N1104N | aaC | aaT | 1 | 1 | C.35 | 0.000774 |
ORF1ab/nsp3 | 1104 | N1104T | aAc | aCc | 1 | 1 | C.36.3 | 0.000567 |
ORF1ab/nsp3 | 1104 | N1104H | Aac | Cac | 1 | 1 | D.2 | 0.000075 |
ORF1ab/nsp3 | 1104 | N1104S | aAc | aGc | 1 | 1 | P.1 | 0.000016 |
ORF1ab/nsp3 | 1104 | N1104N | aaC | aaT | 1 | 1 | P.1.1 | 0.000318 |
ORF1ab/nsp3 | 1104 | N1104Y | Aac | Tac | 1 | 1 | P.1.1 | 0.000318 |
ORF1ab/nsp3 | 1104 | N1104N | aaC | aaT | 1 | 1 | P.1.13 | 0.000898 |
ORF1ab/nsp3 | 1104 | N1104D | Aac | Gac | 1 | 1 | P.1.14 | 0.000048 |
ORF1ab/nsp3 | 1104 | N1104S | aAc | aGc | 1 | 1 | P.1.14 | 0.000048 |
ORF1ab/nsp3 | 1104 | N1104N | aaC | aaT | 1 | 1 | P.1.2 | 0.001156 |
ORF1ab/nsp3 | 1104 | N1104S | aAc | aGc | 1 | 1 | P.1.2 | 0.001156 |
ORF1ab/nsp3 | 1104 | N1104S | aAc | aGc | 1 | 1 | P.1.7 | 0.000319 |
ORF1ab/nsp3 | 1104 | N1104D | Aac | Gac | 1 | 1 | P.2 | 0.000187 |
ORF1ab/nsp3 | 1104 | N1104del | AAC | --- | 1 | 1 | Q.1 | 0.000126 |
ORF1ab/nsp3 | 1104 | N1104N | aaC | aaT | 1 | 1 | Q.4 | 0.000455 |
CoV-GLUE is still in development. CoV-GLUE was originally developed as part of COG-UK by Josh Singer using the GLUE framework at the MRC-University of Glasgow Centre for Virus Research (CVR). In 2021 it was redeveloped by Richard Orton to scale to the millions of genome sequences available. We acknowledge support from the MRC (MC_UU_12014/12), WT (220977/Z/20/Z) and UKRI G2P (MR/W005611/1). Please contact Richard Orton with any queries: Richard.Orton@glasgow.ac.uk
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