CoV-GLUE | Mutations | Mutation

CoV-GLUE Mutation: ORF = ORF1ab/nsp3 : CodonNum = 1104

Details of the codons used for the mutation across all lineages (CodonProp is the proportion each codon is used for this AA mutation):

ORFCodonNumMutORF1abMutMutTypeRefCodonMutCodonAACountCodonCountCodonPropGenome Position
ORF1ab/nsp31104N1104NN1922NsynaaCaaT8620862016029-6031
ORF1ab/nsp31104N1104KN1922KnonsynaaCaaA2892470.8546716029-6031
ORF1ab/nsp31104N1104KN1922KnonsynaaCaaG289420.1453296029-6031
ORF1ab/nsp31104N1104SN1922SnonsynaAcaGc2042030.9950986029-6031
ORF1ab/nsp31104N1104SN1922SnonsynaACaGT20410.004901966029-6031
ORF1ab/nsp31104N1104delN1922deldelAAC---878716029-6031
ORF1ab/nsp31104N1104DN1922DnonsynAacGac848416029-6031
ORF1ab/nsp31104N1104HN1922HnonsynAacCac49480.9795926029-6031
ORF1ab/nsp31104N1104HN1922HnonsynAaCCaT4910.02040826029-6031
ORF1ab/nsp31104N1104YN1922YnonsynAacTac323216029-6031
ORF1ab/nsp31104N1104TN1922TnonsynaAcaCc1180.7272736029-6031
ORF1ab/nsp31104N1104TN1922TnonsynaACaCA1130.2727276029-6031
ORF1ab/nsp31104N1104IN1922InonsynaAcaTc1080.86029-6031
ORF1ab/nsp31104N1104IN1922InonsynaACaTA1010.16029-6031
ORF1ab/nsp31104N1104IN1922InonsynaACaTT1010.16029-6031
ORF1ab/nsp31104N1104RN1922RnonsynAACCGA630.56029-6031
ORF1ab/nsp31104N1104RN1922RnonsynaACaGA620.3333336029-6031
ORF1ab/nsp31104N1104RN1922RnonsynAAcCGc610.1666676029-6031
ORF1ab/nsp31104N1104del2N1922del2delAAC--N520.46029-6031
ORF1ab/nsp31104N1104del2N1922del2delaACa--520.46029-6031
ORF1ab/nsp31104N1104del2N1922del2delAAc--c510.26029-6031
ORF1ab/nsp31104N1104FN1922FnonsynAAcTTc2216029-6031
ORF1ab/nsp31104N1104del1N1922del1delAaC-aN210.56029-6031
ORF1ab/nsp31104N1104del1N1922del1delAaC-aT210.56029-6031
ORF1ab/nsp31104N1104QN1922QnonsynAaCCaA1116029-6031
ORF1ab/nsp31104N1104LN1922LnonsynAAcCTc1116029-6031

Details of the mutation no within lineages (LineageCodonProp is the proportion the codon is observed at, at this particular site, on each lineage):

ORFCodonNumMutRefCodonMutCodonCodonCountAACountLineageLineageCodonProp
ORF1ab/nsp31104N1104NaaCaaT86208620All0.001649
ORF1ab/nsp31104N1104NaaCaaT20402040AE.80.997555
ORF1ab/nsp31104N1104NaaCaaT16351635B.1.1.70.001464
ORF1ab/nsp31104N1104NaaCaaT838838B.1.6370.061235
ORF1ab/nsp31104N1104NaaCaaT530530AY.1030.003291
ORF1ab/nsp31104N1104NaaCaaT421421AY.40.000655
ORF1ab/nsp31104N1104NaaCaaT298298AY.440.001814
ORF1ab/nsp31104N1104KaaCaaA247289All0.000047
ORF1ab/nsp31104N1104KaaCaaG42289All0.000008
ORF1ab/nsp31104N1104NaaCaaT275275B.1.617.20.001035
ORF1ab/nsp31104N1104NaaCaaT225225AY.200.008745
ORF1ab/nsp31104N1104SaAcaGc203204All0.000039
ORF1ab/nsp31104N1104SaACaGT1204All0
ORF1ab/nsp31104N1104NaaCaaT184184AY.430.000815
ORF1ab/nsp31104N1104NaaCaaT107107B.1.20.000942
ORF1ab/nsp31104N1104NaaCaaT9191AY.290.001435
ORF1ab/nsp31104N1104NaaCaaT9191P.10.001434
ORF1ab/nsp31104N1104SaAcaGc9090AY.40.00014
ORF1ab/nsp31104N1104NaaCaaT9090B.10.000824
ORF1ab/nsp31104N1104delAAC---8787All0.000017
ORF1ab/nsp31104N1104DAacGac8484All0.000016
ORF1ab/nsp31104N1104NaaCaaT7575AY.30.000746
ORF1ab/nsp31104N1104KaaCaaA7272AY.40.000112
ORF1ab/nsp31104N1104NaaCaaT6767B.1.10.001215
ORF1ab/nsp31104N1104NaaCaaT6565AY.1020.001723
ORF1ab/nsp31104N1104NaaCaaT6565B.1.1770.000856
ORF1ab/nsp31104N1104NaaCaaT5858AY.250.000349
ORF1ab/nsp31104N1104NaaCaaT5151AY.1180.003195
ORF1ab/nsp31104N1104NaaCaaT5151B.1.258.110.020214
ORF1ab/nsp31104N1104HAacCac4849All0.000009
ORF1ab/nsp31104N1104HAaCCaT149All0
ORF1ab/nsp31104N1104NaaCaaT4949AY.470.001524
ORF1ab/nsp31104N1104NaaCaaT4646B.1.2580.003061
ORF1ab/nsp31104N1104KaaCaaA4545AY.540.004291
ORF1ab/nsp31104N1104KaaCaaG3940AY.1020.001034
ORF1ab/nsp31104N1104KaaCaaA140AY.1020.000027
ORF1ab/nsp31104N1104NaaCaaT4040AY.260.001132
ORF1ab/nsp31104N1104NaaCaaT4040B.1.1.5190.001588
ORF1ab/nsp31104N1104delAAC---3535B.1.1.70.000031
ORF1ab/nsp31104N1104KaaCaaA3434B.1.10.000617
ORF1ab/nsp31104N1104NaaCaaT3333AY.540.003146
ORF1ab/nsp31104N1104NaaCaaT3333B.1.2320.017732
ORF1ab/nsp31104N1104YAacTac3232All0.000006
ORF1ab/nsp31104N1104NaaCaaT3131B.1.5960.002701
ORF1ab/nsp31104N1104NaaCaaT2727B.1.351.30.023663
ORF1ab/nsp31104N1104NaaCaaT2626AY.390.000642
ORF1ab/nsp31104N1104NaaCaaT2424AY.98.10.001162
ORF1ab/nsp31104N1104NaaCaaT2323B.1.1.2220.004692
ORF1ab/nsp31104N1104SaAcaGc2222B.1.1.70.00002
ORF1ab/nsp31104N1104NaaCaaT2121B.1.4290.000494
ORF1ab/nsp31104N1104NaaCaaT1919B.1.2430.001322
ORF1ab/nsp31104N1104NaaCaaT1919B.1.4270.000959
ORF1ab/nsp31104N1104KaaCaaA1919B.1.617.20.000072
ORF1ab/nsp31104N1104NaaCaaT1919R.10.00171
ORF1ab/nsp31104N1104NaaCaaT1818AY.1060.006028
ORF1ab/nsp31104N1104DAacGac1818B.1.1.70.000016
ORF1ab/nsp31104N1104NaaCaaT1818B.1.1600.000561
ORF1ab/nsp31104N1104NaaCaaT1818B.1.5260.000423
ORF1ab/nsp31104N1104DAacGac1717AY.420.000684
ORF1ab/nsp31104N1104NaaCaaT1717AY.60.000699
ORF1ab/nsp31104N1104NaaCaaT1717B.1.466.20.006651
ORF1ab/nsp31104N1104NaaCaaT1717B.1.5750.005158
ORF1ab/nsp31104N1104NaaCaaT1717C.370.001973
ORF1ab/nsp31104N1104NaaCaaT1616AY.1000.000736
ORF1ab/nsp31104N1104NaaCaaT1616AY.1200.000595
ORF1ab/nsp31104N1104DAacGac1616AY.46.60.001155
ORF1ab/nsp31104N1104SaAcaGc1616B.10.000147
ORF1ab/nsp31104N1104NaaCaaT1616B.1.1.3060.007014
ORF1ab/nsp31104N1104NaaCaaT1616B.1.1.750.170213
ORF1ab/nsp31104N1104NaaCaaT1515AY.1190.00053
ORF1ab/nsp31104N1104NaaCaaT1515AY.99.20.001382
ORF1ab/nsp31104N1104HAacCac1515B.1.1.70.000013
ORF1ab/nsp31104N1104NaaCaaT1515Q.80.002474
ORF1ab/nsp31104N1104NaaCaaT1414AY.230.000976
ORF1ab/nsp31104N1104NaaCaaT1414AY.50.000289
ORF1ab/nsp31104N1104NaaCaaT1414B.1.3510.000416
ORF1ab/nsp31104N1104NaaCaaT1414B.1.5380.112903
ORF1ab/nsp31104N1104NaaCaaT1414B.1.6090.006711
ORF1ab/nsp31104N1104NaaCaaT1313AY.1130.001851
ORF1ab/nsp31104N1104YAacTac1313AY.250.000078
ORF1ab/nsp31104N1104YAacTac1313AY.260.000368
ORF1ab/nsp31104N1104KaaCaaA1313AY.440.000079
ORF1ab/nsp31104N1104NaaCaaT1313B.1.1.2970.029083
ORF1ab/nsp31104N1104NaaCaaT1212B.1.360.001751
ORF1ab/nsp31104N1104TaAcaCc811All0.000002
ORF1ab/nsp31104N1104TaACaCA311All0.000001
ORF1ab/nsp31104N1104NaaCaaT1111AY.120.10.003531
ORF1ab/nsp31104N1104NaaCaaT1111P.1.140.000526
ORF1ab/nsp31104N1104IaAcaTc810All0.000002
ORF1ab/nsp31104N1104IaACaTA110All0
ORF1ab/nsp31104N1104IaACaTT110All0
ORF1ab/nsp31104N1104NaaCaaT1010AY.3.10.000853
ORF1ab/nsp31104N1104NaaCaaT1010AY.700.002085
ORF1ab/nsp31104N1104NaaCaaT1010AY.9.20.000367
ORF1ab/nsp31104N1104NaaCaaT1010B.1.177.860.001835
ORF1ab/nsp31104N1104NaaCaaT1010B.1.36.180.004202
ORF1ab/nsp31104N1104NaaCaaT1010P.1.150.002323
ORF1ab/nsp31104N1104KaaCaaA99B.10.000082
ORF1ab/nsp31104N1104SaAcaGc99B.1.4290.000212
ORF1ab/nsp31104N1104SaAcaGc88AY.440.000049
ORF1ab/nsp31104N1104HAacCac88AY.630.003095
ORF1ab/nsp31104N1104NaaCaaT88AY.70.001568
ORF1ab/nsp31104N1104SaAcaGc88B.1.1.3590.222222
ORF1ab/nsp31104N1104NaaCaaT88B.1.258.170.000832
ORF1ab/nsp31104N1104NaaCaaT88B.1.36.310.014011
ORF1ab/nsp31104N1104NaaCaaT88B.1.617.10.001032
ORF1ab/nsp31104N1104NaaCaaT77AY.370.002212
ORF1ab/nsp31104N1104NaaCaaT77AY.4.2.10.001043
ORF1ab/nsp31104N1104NaaCaaT77AY.460.000729
ORF1ab/nsp31104N1104NaaCaaT77AY.850.00299
ORF1ab/nsp31104N1104NaaCaaT77AY.9.10.000586
ORF1ab/nsp31104N1104NaaCaaT77AY.920.002011
ORF1ab/nsp31104N1104KaaCaaA77B.1.1.2820.081395
ORF1ab/nsp31104N1104NaaCaaT77B.1.177.120.001062
ORF1ab/nsp31104N1104NaaCaaT77B.1.177.210.000535
ORF1ab/nsp31104N1104NaaCaaT77B.1.177.650.004657
ORF1ab/nsp31104N1104SaAcaGc77B.1.177.730.003964
ORF1ab/nsp31104N1104NaaCaaT77D.20.000525
ORF1ab/nsp31104N1104RAACCGA36All0.000001
ORF1ab/nsp31104N1104RaACaGA26All0
ORF1ab/nsp31104N1104RAAcCGc16All0
ORF1ab/nsp31104N1104NaaCaaT66AY.1210.000812
ORF1ab/nsp31104N1104NaaCaaT66AY.270.000388
ORF1ab/nsp31104N1104NaaCaaT66AY.4.20.00013
ORF1ab/nsp31104N1104NaaCaaT66AY.420.000241
ORF1ab/nsp31104N1104NaaCaaT66AY.980.000474
ORF1ab/nsp31104N1104NaaCaaT66B0.000767
ORF1ab/nsp31104N1104NaaCaaT66B.1.1.3760.035714
ORF1ab/nsp31104N1104KaaCaaA66B.1.1.4420.111111
ORF1ab/nsp31104N1104NaaCaaT66B.1.351.20.001815
ORF1ab/nsp31104N1104DAacGac66B.1.5260.000141
ORF1ab/nsp31104N1104NaaCaaT66B.1.6210.000531
ORF1ab/nsp31104N1104del2AAC--N25All0
ORF1ab/nsp31104N1104del2aACa--25All0
ORF1ab/nsp31104N1104del2AAc--c15All0
ORF1ab/nsp31104N1104NaaCaaT55AY.140.00044
ORF1ab/nsp31104N1104NaaCaaT55AY.39.10.000198
ORF1ab/nsp31104N1104KaaCaaA55AY.50.000103
ORF1ab/nsp31104N1104NaaCaaT55AY.580.004537
ORF1ab/nsp31104N1104HAacCac55AY.580.004537
ORF1ab/nsp31104N1104NaaCaaT55AY.750.00028
ORF1ab/nsp31104N1104NaaCaaT55AY.75.10.000902
ORF1ab/nsp31104N1104NaaCaaT55AY.770.005637
ORF1ab/nsp31104N1104NaaCaaT55B.1.1.280.001556
ORF1ab/nsp31104N1104NaaCaaT55B.1.1.630.001929
ORF1ab/nsp31104N1104KaaCaaA55B.1.1.70.000004
ORF1ab/nsp31104N1104SaAcaGc55B.1.595.30.131579
ORF1ab/nsp31104N1104NaaCaaT55N.50.008834
ORF1ab/nsp31104N1104TaACaCA240.111111
ORF1ab/nsp31104N1104TaAcaCc240.111111
ORF1ab/nsp31104N1104NaaCaaT44AY.39.1.10.002899
ORF1ab/nsp31104N1104NaaCaaT44AY.4.40.001637
ORF1ab/nsp31104N1104NaaCaaT44AY.610.000419
ORF1ab/nsp31104N1104NaaCaaT44AY.990.004197
ORF1ab/nsp31104N1104delAAC---44B.1.10.000073
ORF1ab/nsp31104N1104KaaCaaA44B.1.1.1760.001757
ORF1ab/nsp31104N1104NaaCaaT44B.1.1.2140.000222
ORF1ab/nsp31104N1104NaaCaaT44B.1.1.250.002274
ORF1ab/nsp31104N1104NaaCaaT44B.1.1.2840.00043
ORF1ab/nsp31104N1104NaaCaaT44B.1.1.390.002039
ORF1ab/nsp31104N1104NaaCaaT44B.1.177.320.005398
ORF1ab/nsp31104N1104DAacGac44B.1.20.000035
ORF1ab/nsp31104N1104NaaCaaT44B.1.2340.000528
ORF1ab/nsp31104N1104NaaCaaT44B.1.5250.000453
ORF1ab/nsp31104N1104NaaCaaT44B.1.5580.018265
ORF1ab/nsp31104N1104delAAC---44B.1.617.20.000015
ORF1ab/nsp31104N1104NaaCaaT44B.60.00364
ORF1ab/nsp31104N1104NaaCaaT33AY.1100.000338
ORF1ab/nsp31104N1104SaAcaGc33AY.116.10.000934
ORF1ab/nsp31104N1104NaaCaaT33AY.1170.000254
ORF1ab/nsp31104N1104DAacGac33AY.140.000264
ORF1ab/nsp31104N1104NaaCaaT33AY.16.10.00141
ORF1ab/nsp31104N1104NaaCaaT33AY.240.001293
ORF1ab/nsp31104N1104delAAC---33AY.250.000018
ORF1ab/nsp31104N1104NaaCaaT33AY.350.000699
ORF1ab/nsp31104N1104NaaCaaT33AY.360.000445
ORF1ab/nsp31104N1104HAacCac33AY.40.000005
ORF1ab/nsp31104N1104HAacCac33AY.430.000013
ORF1ab/nsp31104N1104delAAC---33AY.430.000013
ORF1ab/nsp31104N1104NaaCaaT33AY.450.000365
ORF1ab/nsp31104N1104KaaCaaA33AZ.20.002463
ORF1ab/nsp31104N1104delAAC---33B.10.000027
ORF1ab/nsp31104N1104NaaCaaT33B.1.1.10.00098
ORF1ab/nsp31104N1104NaaCaaT33B.1.1.1110.044118
ORF1ab/nsp31104N1104NaaCaaT33B.1.1.3010.003538
ORF1ab/nsp31104N1104KaaCaaA33B.1.1.3180.000905
ORF1ab/nsp31104N1104NaaCaaT33B.1.1.3480.002389
ORF1ab/nsp31104N1104NaaCaaT33B.1.177.160.001993
ORF1ab/nsp31104N1104NaaCaaT33B.1.177.60.00293
ORF1ab/nsp31104N1104NaaCaaT33B.1.177.600.000655
ORF1ab/nsp31104N1104NaaCaaT33B.1.2650.003812
ORF1ab/nsp31104N1104NaaCaaT33B.1.3620.004622
ORF1ab/nsp31104N1104NaaCaaT33B.1.3770.013699
ORF1ab/nsp31104N1104NaaCaaT33B.1.4000.001287
ORF1ab/nsp31104N1104NaaCaaT33B.1.438.10.000322
ORF1ab/nsp31104N1104NaaCaaT33B.1.5680.003333
ORF1ab/nsp31104N1104NaaCaaT33B.1.6120.007958
ORF1ab/nsp31104N1104NaaCaaT33B.1.6310.010101
ORF1ab/nsp31104N1104SaAcaGc33C.370.000348
ORF1ab/nsp31104N1104NaaCaaT33W.20.014493
ORF1ab/nsp31104N1104HAacCac220.111111
ORF1ab/nsp31104N1104SaAcaGc220.111111
ORF1ab/nsp31104N1104FAAcTTc220.111111
ORF1ab/nsp31104N1104RaACaGA220.111111
ORF1ab/nsp31104N1104KaaCaaA220.111111
ORF1ab/nsp31104N1104NaaCaaT22AB.10.016393
ORF1ab/nsp31104N1104FAAcTTc22All0
ORF1ab/nsp31104N1104del1AaC-aN12All0
ORF1ab/nsp31104N1104del1AaC-aT12All0
ORF1ab/nsp31104N1104NaaCaaT22AM.40.007143
ORF1ab/nsp31104N1104SaAcaGc22AY.1020.000053
ORF1ab/nsp31104N1104NaaCaaT22AY.1070.000932
ORF1ab/nsp31104N1104NaaCaaT22AY.1140.000462
ORF1ab/nsp31104N1104NaaCaaT22AY.1160.000574
ORF1ab/nsp31104N1104NaaCaaT22AY.116.10.000623
ORF1ab/nsp31104N1104KaaCaaA22AY.260.000057
ORF1ab/nsp31104N1104SaAcaGc22AY.260.000057
ORF1ab/nsp31104N1104NaaCaaT22AY.320.001065
ORF1ab/nsp31104N1104NaaCaaT22AY.330.000134
ORF1ab/nsp31104N1104NaaCaaT22AY.380.000999
ORF1ab/nsp31104N1104delAAC---22AY.4.50.000215
ORF1ab/nsp31104N1104delAAC---22AY.440.000012
ORF1ab/nsp31104N1104NaaCaaT22AY.46.60.000144
ORF1ab/nsp31104N1104HAacCac22AY.610.00021
ORF1ab/nsp31104N1104DAacGac22AY.700.000417
ORF1ab/nsp31104N1104NaaCaaT22AY.710.00095
ORF1ab/nsp31104N1104NaaCaaT22AY.740.000231
ORF1ab/nsp31104N1104NaaCaaT22AY.820.002714
ORF1ab/nsp31104N1104NaaCaaT22AY.950.001522
ORF1ab/nsp31104N1104DAacGac22B.10.000018
ORF1ab/nsp31104N1104SaAcaGc22B.1.10.000036
ORF1ab/nsp31104N1104HAaCCaT12B.1.10.000018
ORF1ab/nsp31104N1104HAacCac12B.1.10.000018
ORF1ab/nsp31104N1104IaACaTA12B.1.10.000018
ORF1ab/nsp31104N1104IaACaTT12B.1.10.000018
ORF1ab/nsp31104N1104NaaCaaT22B.1.1.1570.001826
ORF1ab/nsp31104N1104NaaCaaT22B.1.1.2160.001781
ORF1ab/nsp31104N1104KaaCaaA22B.1.1.2220.000408
ORF1ab/nsp31104N1104NaaCaaT22B.1.1.4340.000697
ORF1ab/nsp31104N1104NaaCaaT22B.1.1.580.010753
ORF1ab/nsp31104N1104NaaCaaT22B.1.1570.00597
ORF1ab/nsp31104N1104SaAcaGc22B.1.1600.000062
ORF1ab/nsp31104N1104IaAcaTc22B.1.1600.000062
ORF1ab/nsp31104N1104NaaCaaT22B.1.160.90.014388
ORF1ab/nsp31104N1104NaaCaaT22B.1.1620.01005
ORF1ab/nsp31104N1104DAacGac22B.1.1770.000026
ORF1ab/nsp31104N1104delAAC---22B.1.1770.000026
ORF1ab/nsp31104N1104NaaCaaT22B.1.177.540.001213
ORF1ab/nsp31104N1104DAacGac22B.1.177.810.000379
ORF1ab/nsp31104N1104NaaCaaT22B.1.177.810.000379
ORF1ab/nsp31104N1104KaaCaaA22B.1.20.000018
ORF1ab/nsp31104N1104NaaCaaT22B.1.2410.001623
ORF1ab/nsp31104N1104delAAC---22B.1.2580.000133
ORF1ab/nsp31104N1104NaaCaaT22B.1.258.220.005333
ORF1ab/nsp31104N1104delAAC---22B.1.3510.000059
ORF1ab/nsp31104N1104KaaCaaA22B.1.360.000292
ORF1ab/nsp31104N1104KaaCaaA22B.1.5170.000854
ORF1ab/nsp31104N1104NaaCaaT22B.1.5460.007407
ORF1ab/nsp31104N1104HAacCac22B.1.617.20.000008
ORF1ab/nsp31104N1104NaaCaaT22C.36.30.001134
ORF1ab/nsp31104N1104delAAC---22C.370.000232
ORF1ab/nsp31104N1104delAAC---22P.10.000032
ORF1ab/nsp31104N1104NaaCaaT22P.1.120.000968
ORF1ab/nsp31104N1104NaaCaaT22P.1.160.000748
ORF1ab/nsp31104N1104NaaCaaT22P.1.170.000324
ORF1ab/nsp31104N1104NaaCaaT22P.1.40.001953
ORF1ab/nsp31104N1104NaaCaaT22P.1.70.000639
ORF1ab/nsp31104N1104NaaCaaT22P.20.000373
ORF1ab/nsp31104N1104NaaCaaT22Q.10.000253
ORF1ab/nsp31104N1104KaaCaaG11A0.000387
ORF1ab/nsp31104N1104SaAcaGc11A0.000387
ORF1ab/nsp31104N1104NaaCaaT11A.10.000282
ORF1ab/nsp31104N1104NaaCaaT11A.190.009434
ORF1ab/nsp31104N1104NaaCaaT11A.23.10.000704
ORF1ab/nsp31104N1104NaaCaaT11A.250.018182
ORF1ab/nsp31104N1104NaaCaaT11AD.20.000219
ORF1ab/nsp31104N1104NaaCaaT11AE.70.083333
ORF1ab/nsp31104N1104LAAcCTc11All0
ORF1ab/nsp31104N1104QAaCCaA11All0
ORF1ab/nsp31104N1104NaaCaaT11AW.10.003049
ORF1ab/nsp31104N1104YAacTac11AY.1020.000027
ORF1ab/nsp31104N1104DAacGac11AY.1030.000006
ORF1ab/nsp31104N1104SaAcaGc11AY.1030.000006
ORF1ab/nsp31104N1104NaaCaaT11AY.1040.001984
ORF1ab/nsp31104N1104YAacTac11AY.1050.000643
ORF1ab/nsp31104N1104NaaCaaT11AY.1080.001103
ORF1ab/nsp31104N1104NaaCaaT11AY.1090.00074
ORF1ab/nsp31104N1104RAACCGA11AY.1130.000142
ORF1ab/nsp31104N1104DAacGac11AY.1160.000287
ORF1ab/nsp31104N1104NaaCaaT11AY.120.000316
ORF1ab/nsp31104N1104NaaCaaT11AY.130.000161
ORF1ab/nsp31104N1104TaAcaCc11AY.140.000088
ORF1ab/nsp31104N1104NaaCaaT11AY.160.00038
ORF1ab/nsp31104N1104SaAcaGc11AY.200.000039
ORF1ab/nsp31104N1104NaaCaaT11AY.23.10.000417
ORF1ab/nsp31104N1104TaAcaCc11AY.260.000028
ORF1ab/nsp31104N1104KaaCaaG11AY.270.000065
ORF1ab/nsp31104N1104NaaCaaT11AY.29.10.000221
ORF1ab/nsp31104N1104SaACaGT11AY.30.00001
ORF1ab/nsp31104N1104NaaCaaT11AY.300.000396
ORF1ab/nsp31104N1104HAacCac11AY.34.10.00051
ORF1ab/nsp31104N1104SaAcaGc11AY.350.000233
ORF1ab/nsp31104N1104SaAcaGc11AY.390.000025
ORF1ab/nsp31104N1104del2aACa--11AY.40.000002
ORF1ab/nsp31104N1104YAacTac11AY.40.000002
ORF1ab/nsp31104N1104IaAcaTc11AY.40.000002
ORF1ab/nsp31104N1104delAAC---11AY.4.20.000022
ORF1ab/nsp31104N1104NaaCaaT11AY.4.30.000842
ORF1ab/nsp31104N1104NaaCaaT11AY.4.50.000107
ORF1ab/nsp31104N1104NaaCaaT11AY.400.000964
ORF1ab/nsp31104N1104SaAcaGc11AY.420.00004
ORF1ab/nsp31104N1104SaAcaGc11AY.430.000004
ORF1ab/nsp31104N1104KaaCaaA11AY.430.000004
ORF1ab/nsp31104N1104DAacGac11AY.430.000004
ORF1ab/nsp31104N1104TaAcaCc11AY.430.000004
ORF1ab/nsp31104N1104TaAcaCc11AY.440.000006
ORF1ab/nsp31104N1104RAACCGA11AY.440.000006
ORF1ab/nsp31104N1104IaAcaTc11AY.440.000006
ORF1ab/nsp31104N1104SaAcaGc11AY.450.000122
ORF1ab/nsp31104N1104NaaCaaT11AY.46.50.000198
ORF1ab/nsp31104N1104delAAC---11AY.46.60.000072
ORF1ab/nsp31104N1104SaAcaGc11AY.470.000031
ORF1ab/nsp31104N1104NaaCaaT11AY.480.000465
ORF1ab/nsp31104N1104SaAcaGc11AY.50.000021
ORF1ab/nsp31104N1104NaaCaaT11AY.5.30.000337
ORF1ab/nsp31104N1104delAAC---11AY.520.000814
ORF1ab/nsp31104N1104SaAcaGc11AY.540.000095
ORF1ab/nsp31104N1104delAAC---11AY.540.000095
ORF1ab/nsp31104N1104NaaCaaT11AY.550.000917
ORF1ab/nsp31104N1104delAAC---11AY.610.000105
ORF1ab/nsp31104N1104KaaCaaA11AY.610.000105
ORF1ab/nsp31104N1104delAAC---11AY.650.000533
ORF1ab/nsp31104N1104delAAC---11AY.660.00107
ORF1ab/nsp31104N1104NaaCaaT11AY.7.10.000113
ORF1ab/nsp31104N1104delAAC---11AY.710.000475
ORF1ab/nsp31104N1104YAacTac11AY.750.000056
ORF1ab/nsp31104N1104HAacCac11AY.75.10.00018
ORF1ab/nsp31104N1104KaaCaaA11AY.80.000606
ORF1ab/nsp31104N1104LAAcCTc11AY.840.000437
ORF1ab/nsp31104N1104delAAC---11AY.850.000427
ORF1ab/nsp31104N1104DAacGac11AY.870.000833
ORF1ab/nsp31104N1104DAacGac11AY.9.20.000037
ORF1ab/nsp31104N1104delAAC---11AY.9.20.000037
ORF1ab/nsp31104N1104NaaCaaT11AY.930.000273
ORF1ab/nsp31104N1104KaaCaaA11AY.950.000761
ORF1ab/nsp31104N1104del1AaC-aT11AY.990.001049
ORF1ab/nsp31104N1104NaaCaaT11AZ.20.000821
ORF1ab/nsp31104N1104RAACCGA11B.10.000009
ORF1ab/nsp31104N1104IaAcaTc11B.10.000009
ORF1ab/nsp31104N1104HAacCac11B.10.000009
ORF1ab/nsp31104N1104QAaCCaA11B.1.10.000018
ORF1ab/nsp31104N1104NaaCaaT11B.1.1.1210.002427
ORF1ab/nsp31104N1104NaaCaaT11B.1.1.1410.002012
ORF1ab/nsp31104N1104NaaCaaT11B.1.1.1610.003534
ORF1ab/nsp31104N1104NaaCaaT11B.1.1.1700.001247
ORF1ab/nsp31104N1104NaaCaaT11B.1.1.1740.003378
ORF1ab/nsp31104N1104del2AAC--N11B.1.1.2070.001182
ORF1ab/nsp31104N1104del2aACa--11B.1.1.2160.00089
ORF1ab/nsp31104N1104DAacGac11B.1.1.2180.007692
ORF1ab/nsp31104N1104SaAcaGc11B.1.1.2220.000204
ORF1ab/nsp31104N1104NaaCaaT11B.1.1.2650.003155
ORF1ab/nsp31104N1104NaaCaaT11B.1.1.2690.001353
ORF1ab/nsp31104N1104NaaCaaT11B.1.1.2770.000759
ORF1ab/nsp31104N1104NaaCaaT11B.1.1.2790.001121
ORF1ab/nsp31104N1104NaaCaaT11B.1.1.2880.001916
ORF1ab/nsp31104N1104NaaCaaT11B.1.1.2900.018182
ORF1ab/nsp31104N1104NaaCaaT11B.1.1.3030.002762
ORF1ab/nsp31104N1104delAAC---11B.1.1.3110.000358
ORF1ab/nsp31104N1104NaaCaaT11B.1.1.3280.016949
ORF1ab/nsp31104N1104NaaCaaT11B.1.1.330.000421
ORF1ab/nsp31104N1104delAAC---11B.1.1.3480.000796
ORF1ab/nsp31104N1104NaaCaaT11B.1.1.3510.002793
ORF1ab/nsp31104N1104NaaCaaT11B.1.1.3630.005988
ORF1ab/nsp31104N1104NaaCaaT11B.1.1.3690.000446
ORF1ab/nsp31104N1104NaaCaaT11B.1.1.3960.045455
ORF1ab/nsp31104N1104NaaCaaT11B.1.1.3970.002252
ORF1ab/nsp31104N1104NaaCaaT11B.1.1.4020.011111
ORF1ab/nsp31104N1104delAAC---11B.1.1.4090.002833
ORF1ab/nsp31104N1104NaaCaaT11B.1.1.4870.005587
ORF1ab/nsp31104N1104NaaCaaT11B.1.1.540.003021
ORF1ab/nsp31104N1104YAacTac11B.1.1.70.000001
ORF1ab/nsp31104N1104del1AaC-aN11B.1.1.70.000001
ORF1ab/nsp31104N1104del2AAC--N11B.1.1.70.000001
ORF1ab/nsp31104N1104NaaCaaT11B.1.1280.000635
ORF1ab/nsp31104N1104NaaCaaT11B.1.1390.000733
ORF1ab/nsp31104N1104NaaCaaT11B.1.1470.000756
ORF1ab/nsp31104N1104NaaCaaT11B.1.160.140.002119
ORF1ab/nsp31104N1104IaAcaTc11B.1.160.160.000929
ORF1ab/nsp31104N1104NaaCaaT11B.1.1650.011905
ORF1ab/nsp31104N1104NaaCaaT11B.1.1700.00431
ORF1ab/nsp31104N1104HAacCac11B.1.1770.000013
ORF1ab/nsp31104N1104IaAcaTc11B.1.1770.000013
ORF1ab/nsp31104N1104KaaCaaA11B.1.1770.000013
ORF1ab/nsp31104N1104NaaCaaT11B.1.177.230.003236
ORF1ab/nsp31104N1104NaaCaaT11B.1.177.240.001295
ORF1ab/nsp31104N1104delAAC---11B.1.177.320.00135
ORF1ab/nsp31104N1104NaaCaaT11B.1.177.330.001645
ORF1ab/nsp31104N1104SaAcaGc11B.1.177.440.000519
ORF1ab/nsp31104N1104IaAcaTc11B.1.177.440.000519
ORF1ab/nsp31104N1104delAAC---11B.1.177.510.004566
ORF1ab/nsp31104N1104DAacGac11B.1.177.560.000668
ORF1ab/nsp31104N1104NaaCaaT11B.1.177.570.000281
ORF1ab/nsp31104N1104NaaCaaT11B.1.177.70.000165
ORF1ab/nsp31104N1104NaaCaaT11B.1.177.830.001481
ORF1ab/nsp31104N1104NaaCaaT11B.1.177.870.000728
ORF1ab/nsp31104N1104delAAC---11B.1.20.000009
ORF1ab/nsp31104N1104TaACaCA11B.1.20.000009
ORF1ab/nsp31104N1104NaaCaaT11B.1.2100.002132
ORF1ab/nsp31104N1104NaaCaaT11B.1.2110.025
ORF1ab/nsp31104N1104NaaCaaT11B.1.214.20.0006
ORF1ab/nsp31104N1104NaaCaaT11B.1.2190.009434
ORF1ab/nsp31104N1104NaaCaaT11B.1.221.10.002907
ORF1ab/nsp31104N1104NaaCaaT11B.1.2390.001221
ORF1ab/nsp31104N1104KaaCaaA11B.1.2520.006623
ORF1ab/nsp31104N1104NaaCaaT11B.1.2790.000514
ORF1ab/nsp31104N1104NaaCaaT11B.1.3110.000275
ORF1ab/nsp31104N1104NaaCaaT11B.1.3200.001245
ORF1ab/nsp31104N1104NaaCaaT11B.1.3250.006897
ORF1ab/nsp31104N1104DAacGac11B.1.3400.004292
ORF1ab/nsp31104N1104KaaCaaG11B.1.3510.00003
ORF1ab/nsp31104N1104NaaCaaT11B.1.36.190.009259
ORF1ab/nsp31104N1104KaaCaaA11B.1.36.80.001
ORF1ab/nsp31104N1104NaaCaaT11B.1.36.80.001
ORF1ab/nsp31104N1104SaAcaGc11B.1.3670.000792
ORF1ab/nsp31104N1104NaaCaaT11B.1.3670.000792
ORF1ab/nsp31104N1104HAacCac11B.1.3710.001122
ORF1ab/nsp31104N1104NaaCaaT11B.1.4030.003268
ORF1ab/nsp31104N1104delAAC---11B.1.416.10.001563
ORF1ab/nsp31104N1104NaaCaaT11B.1.4200.010417
ORF1ab/nsp31104N1104NaaCaaT11B.1.4260.001009
ORF1ab/nsp31104N1104HAacCac11B.1.4270.00005
ORF1ab/nsp31104N1104DAacGac11B.1.4270.00005
ORF1ab/nsp31104N1104NaaCaaT11B.1.4390.005917
ORF1ab/nsp31104N1104NaaCaaT11B.1.440.008333
ORF1ab/nsp31104N1104SaAcaGc11B.1.4700.001404
ORF1ab/nsp31104N1104NaaCaaT11B.1.4740.001901
ORF1ab/nsp31104N1104NaaCaaT11B.1.4800.002488
ORF1ab/nsp31104N1104del2AAc--c11B.1.4870.019608
ORF1ab/nsp31104N1104NaaCaaT11B.1.5160.001957
ORF1ab/nsp31104N1104delAAC---11B.1.5260.000024
ORF1ab/nsp31104N1104NaaCaaT11B.1.5510.00129
ORF1ab/nsp31104N1104NaaCaaT11B.1.5760.000907
ORF1ab/nsp31104N1104NaaCaaT11B.1.5800.004065
ORF1ab/nsp31104N1104NaaCaaT11B.1.5820.000491
ORF1ab/nsp31104N1104NaaCaaT11B.1.5880.00091
ORF1ab/nsp31104N1104NaaCaaT11B.1.5890.007576
ORF1ab/nsp31104N1104SaAcaGc11B.1.5960.000087
ORF1ab/nsp31104N1104DAacGac11B.1.617.10.000129
ORF1ab/nsp31104N1104SaAcaGc11B.1.617.10.000129
ORF1ab/nsp31104N1104RAAcCGc11B.1.617.10.000129
ORF1ab/nsp31104N1104SaAcaGc11B.1.617.20.000004
ORF1ab/nsp31104N1104TaAcaCc11B.1.617.20.000004
ORF1ab/nsp31104N1104KaaCaaA11B.1.6210.000089
ORF1ab/nsp31104N1104NaaCaaT11B.1.6250.002353
ORF1ab/nsp31104N1104NaaCaaT11B.1.760.011364
ORF1ab/nsp31104N1104NaaCaaT11B.1.90.006173
ORF1ab/nsp31104N1104NaaCaaT11B.1.910.002075
ORF1ab/nsp31104N1104NaaCaaT11B.1.940.027027
ORF1ab/nsp31104N1104NaaCaaT11B.100.008264
ORF1ab/nsp31104N1104delAAC---11B.150.017544
ORF1ab/nsp31104N1104NaaCaaT11B.400.000364
ORF1ab/nsp31104N1104NaaCaaT11C.160.00106
ORF1ab/nsp31104N1104NaaCaaT11C.180.002591
ORF1ab/nsp31104N1104KaaCaaA11C.350.000774
ORF1ab/nsp31104N1104delAAC---11C.350.000774
ORF1ab/nsp31104N1104NaaCaaT11C.350.000774
ORF1ab/nsp31104N1104TaAcaCc11C.36.30.000567
ORF1ab/nsp31104N1104HAacCac11D.20.000075
ORF1ab/nsp31104N1104SaAcaGc11P.10.000016
ORF1ab/nsp31104N1104NaaCaaT11P.1.10.000318
ORF1ab/nsp31104N1104YAacTac11P.1.10.000318
ORF1ab/nsp31104N1104NaaCaaT11P.1.130.000898
ORF1ab/nsp31104N1104DAacGac11P.1.140.000048
ORF1ab/nsp31104N1104SaAcaGc11P.1.140.000048
ORF1ab/nsp31104N1104NaaCaaT11P.1.20.001156
ORF1ab/nsp31104N1104SaAcaGc11P.1.20.001156
ORF1ab/nsp31104N1104SaAcaGc11P.1.70.000319
ORF1ab/nsp31104N1104DAacGac11P.20.000187
ORF1ab/nsp31104N1104delAAC---11Q.10.000126
ORF1ab/nsp31104N1104NaaCaaT11Q.40.000455