CoV-GLUEGenomeCountriesLineagesMutationsInsertionsDeletionsUpdated:

CoV-GLUE | Mutations | Mutation

CoV-GLUE Mutation: ORF = ORF1ab/nsp3 : CodonNum = 1103 & Codon = cTa

Details of the codons used for the mutation across all lineages (CodonProp is the proportion each codon is used for this AA mutation):

ORFCodonNumMutORF1abMutMutTypeRefCodonMutCodonAACountCodonCountCodonPropGenome Position
ORF1ab/nsp31103P1103LP1921LnonsyncCacTa823182100.9974496026-6028

Details of the mutation no within lineages (LineageCodonProp is the proportion the codon is observed at, at this particular site, on each lineage):

ORFCodonNumMutRefCodonMutCodonCodonCountAACountLineageLineageCodonProp
ORF1ab/nsp31103P1103LcCacTa82108231All0.00157
ORF1ab/nsp31103P1103LcCacTa11961198B.1.1.70.001071
ORF1ab/nsp31103P1103LcCacTa992992B.1.2430.069028
ORF1ab/nsp31103P1103LcCacTa802803AY.430.003553
ORF1ab/nsp31103P1103LcCacTa609609AY.40.000948
ORF1ab/nsp31103P1103LcCacTa272272AY.420.010943
ORF1ab/nsp31103P1103LcCacTa265265AY.60.010899
ORF1ab/nsp31103P1103LcCacTa258260B.1.617.20.000971
ORF1ab/nsp31103P1103LcCacTa252252B.1.177.770.183007
ORF1ab/nsp31103P1103LcCacTa223224B.10.002043
ORF1ab/nsp31103P1103LcCacTa191191B.1.20.001682
ORF1ab/nsp31103P1103LcCacTa180180B.1.1770.00237
ORF1ab/nsp31103P1103LcCacTa169169AY.260.004784
ORF1ab/nsp31103P1103LcCacTa148148B.1.2210.010513
ORF1ab/nsp31103P1103LcCacTa129129B.1.5250.014598
ORF1ab/nsp31103P1103LcCacTa114114AY.30.001134
ORF1ab/nsp31103P1103LcCacTa102102AY.340.00989
ORF1ab/nsp31103P1103LcCacTa9494B.1.2370.467662
ORF1ab/nsp31103P1103LcCacTa8888P.1.140.004207
ORF1ab/nsp31103P1103LcCacTa8585AY.1030.000528
ORF1ab/nsp31103P1103LcCacTa8585AY.440.000517
ORF1ab/nsp31103P1103LcCacTa8484AY.250.000505
ORF1ab/nsp31103P1103LcCacTa8181AY.1010.039725
ORF1ab/nsp31103P1103LcCacTa7979B.1.4270.003989
ORF1ab/nsp31103P1103LcCacTa6161P.10.000961
ORF1ab/nsp31103P1103LcCacTa5959B0.007541
ORF1ab/nsp31103P1103LcCacTa5555B.1.1.5190.002184
ORF1ab/nsp31103P1103LcCacTa5454B.1.2340.007125
ORF1ab/nsp31103P1103LcCacTa5353B.1.360.007733
ORF1ab/nsp31103P1103LcCacTa5050AY.160.018983
ORF1ab/nsp31103P1103LcCacTa4949AY.1170.004141
ORF1ab/nsp31103P1103LcCacTa4949AY.390.001211
ORF1ab/nsp31103P1103LcCacTa4647B.1.10.000834
ORF1ab/nsp31103P1103LcCacTa3939B.1.1.3260.068662
ORF1ab/nsp31103P1103LcCacTa3838AY.1080.041896
ORF1ab/nsp31103P1103LcCacTa3636AY.1130.005126
ORF1ab/nsp31103P1103LcCacTa3535B.1.1600.001092
ORF1ab/nsp31103P1103LcCacTa3434AY.750.001905
ORF1ab/nsp31103P1103LcCacTa3131B.1.1.3770.042818
ORF1ab/nsp31103P1103LcCacTa2727AY.290.000426
ORF1ab/nsp31103P1103LcCacTa2626B.1.4290.000612
ORF1ab/nsp31103P1103LcCacTa2323B.1.1990.095041
ORF1ab/nsp31103P1103LcCacTa2323B.1.5760.020852
ORF1ab/nsp31103P1103LcCacTa2222B.1.177.320.02969
ORF1ab/nsp31103P1103LcCacTa2222B.1.177.600.004806
ORF1ab/nsp31103P1103LcCacTa2121AY.200.000816
ORF1ab/nsp31103P1103LcCacTa2020C.370.002321
ORF1ab/nsp31103P1103LcCacTa1919AY.1070.008854
ORF1ab/nsp31103P1103LcCacTa1919AY.1180.00119
ORF1ab/nsp31103P1103LcCacTa1919AY.50.000392
ORF1ab/nsp31103P1103LcCacTa1919B.1.3510.000565
ORF1ab/nsp31103P1103LcCacTa1919B.1.5650.015397
ORF1ab/nsp31103P1103LcCacTa1818B.1.1.2770.013657
ORF1ab/nsp31103P1103LcCacTa1717B.1.2580.001131
ORF1ab/nsp31103P1103LcCacTa1717B.1.5800.069106
ORF1ab/nsp31103P1103LcCacTa1616AY.20.005698
ORF1ab/nsp31103P1103LcCacTa1616AY.270.001036
ORF1ab/nsp31103P1103LcCacTa1616AY.450.001947
ORF1ab/nsp31103P1103LcCacTa1414B.1.5170.005978
ORF1ab/nsp31103P1103LcCacTa1313AY.1020.000345
ORF1ab/nsp31103P1103LcCacTa1313B.1.1.2840.001396
ORF1ab/nsp31103P1103LcCacTa1313B.1.6370.00095
ORF1ab/nsp31103P1103LcCacTa1212AY.1190.000424
ORF1ab/nsp31103P1103LcCacTa1212B.1.1.3060.005261
ORF1ab/nsp31103P1103LcCacTa1212B.1.5960.001046
ORF1ab/nsp31103P1103LcCacTa1111B.1.1.2890.022917
ORF1ab/nsp31103P1103LcCacTa1010AY.540.000953
ORF1ab/nsp31103P1103LcCacTa1010AY.650.00533
ORF1ab/nsp31103P1103LcCacTa1010AY.880.008842
ORF1ab/nsp31103P1103LcCacTa1010B.1.1.3180.003018
ORF1ab/nsp31103P1103LcCacTa1010B.1.1260.012755
ORF1ab/nsp31103P1103LcCacTa99AY.1200.000335
ORF1ab/nsp31103P1103LcCacTa99AY.46.60.00065
ORF1ab/nsp31103P1103LcCacTa99B.1.1.280.002801
ORF1ab/nsp31103P1103LcCacTa99B.1.36.290.004656
ORF1ab/nsp31103P1103LcCacTa99B.1.5870.017078
ORF1ab/nsp31103P1103LcCacTa99P.20.00168
ORF1ab/nsp31103P1103LcCacTa99Q.70.01
ORF1ab/nsp31103P1103LcCacTa88AY.230.000558
ORF1ab/nsp31103P1103LcCacTa88B.1.1.2200.01487
ORF1ab/nsp31103P1103LcCacTa77AY.330.000467
ORF1ab/nsp31103P1103LcCacTa77AY.360.001037
ORF1ab/nsp31103P1103LcCacTa77B.1.2400.001509
ORF1ab/nsp31103P1103LcCacTa77B.1.2420.132075
ORF1ab/nsp31103P1103LcCacTa77B.1.36.170.003458
ORF1ab/nsp31103P1103LcCacTa77B.1.6210.00062
ORF1ab/nsp31103P1103LcCacTa77B.1.9.40.042945
ORF1ab/nsp31103P1103LcCacTa77P.1.150.001626
ORF1ab/nsp31103P1103LcCacTa77Q.10.000884
ORF1ab/nsp31103P1103LcCacTa66AY.1210.000812
ORF1ab/nsp31103P1103LcCacTa66AY.140.000528
ORF1ab/nsp31103P1103LcCacTa66AY.470.000187
ORF1ab/nsp31103P1103LcCacTa66B.1.1.2140.000333
ORF1ab/nsp31103P1103LcCacTa66B.1.4160.007614
ORF1ab/nsp31103P1103LcCacTa66B.1.4530.019417
ORF1ab/nsp31103P1103LcCacTa66Q.80.000989
ORF1ab/nsp31103P1103LcCacTa55A.270.008278
ORF1ab/nsp31103P1103LcCacTa55A.280.013228
ORF1ab/nsp31103P1103LcCacTa55AY.39.10.000198
ORF1ab/nsp31103P1103LcCacTa55AY.610.000524
ORF1ab/nsp31103P1103LcCacTa55AY.620.002179
ORF1ab/nsp31103P1103LcCacTa55B.1.1.2220.00102
ORF1ab/nsp31103P1103LcCacTa55B.1.3490.003574
ORF1ab/nsp31103P1103LcCacTa55B.1.3980.014881
ORF1ab/nsp31103P1103LcCacTa55B.1.5260.000118
ORF1ab/nsp31103P1103LcCacTa55B.1.617.10.000645
ORF1ab/nsp31103P1103LcCacTa55P.1.40.004883
ORF1ab/nsp31103P1103LcCacTa44AY.410.001176
ORF1ab/nsp31103P1103LcCacTa44AY.460.000416
ORF1ab/nsp31103P1103LcCacTa44AY.740.000463
ORF1ab/nsp31103P1103LcCacTa44AY.980.000316
ORF1ab/nsp31103P1103LcCacTa44B.1.1.330.001684
ORF1ab/nsp31103P1103LcCacTa44B.1.177.440.002076
ORF1ab/nsp31103P1103LcCacTa44B.1.177.70.000659
ORF1ab/nsp31103P1103LcCacTa44B.1.3110.001098
ORF1ab/nsp31103P1103LcCacTa33AY.1050.001929
ORF1ab/nsp31103P1103LcCacTa33AY.1060.001005
ORF1ab/nsp31103P1103LcCacTa33AY.3.10.000256
ORF1ab/nsp31103P1103LcCacTa33AY.4.20.000065
ORF1ab/nsp31103P1103LcCacTa33AY.46.40.000494
ORF1ab/nsp31103P1103LcCacTa33AY.75.10.000541
ORF1ab/nsp31103P1103LcCacTa33AY.90.000203
ORF1ab/nsp31103P1103LcCacTa33AY.9.10.000251
ORF1ab/nsp31103P1103LcCacTa33B.1.1.2410.006211
ORF1ab/nsp31103P1103LcCacTa33B.1.1.3720.002066
ORF1ab/nsp31103P1103LcCacTa33B.1.1.4340.001046
ORF1ab/nsp31103P1103LcCacTa33B.1.177.570.000843
ORF1ab/nsp31103P1103LcCacTa33B.1.177.810.000568
ORF1ab/nsp31103P1103LcCacTa33B.1.177.860.00055
ORF1ab/nsp31103P1103LcCacTa33B.1.5090.002597
ORF1ab/nsp31103P1103LcCacTa33B.1.5950.000783
ORF1ab/nsp31103P1103LcCacTa33B.1.6000.017544
ORF1ab/nsp31103P1103LcCacTa33C.160.003181
ORF1ab/nsp31103P1103LcCacTa33R.10.00027
ORF1ab/nsp31103P1103LcCacTa22AY.1000.000092
ORF1ab/nsp31103P1103LcCacTa22AY.1100.000225
ORF1ab/nsp31103P1103LcCacTa22AY.1110.000366
ORF1ab/nsp31103P1103LcCacTa22AY.16.10.00094
ORF1ab/nsp31103P1103LcCacTa22AY.380.000999
ORF1ab/nsp31103P1103LcCacTa22AY.550.001835
ORF1ab/nsp31103P1103LcCacTa22AY.9.20.000073
ORF1ab/nsp31103P1103LcCacTa22B.1.1.1760.000879
ORF1ab/nsp31103P1103LcCacTa22B.1.1.2430.008163
ORF1ab/nsp31103P1103LcCacTa22B.1.1.3480.001592
ORF1ab/nsp31103P1103LcCacTa22B.1.1.4320.002532
ORF1ab/nsp31103P1103LcCacTa22B.1.1.460.008734
ORF1ab/nsp31103P1103LcCacTa22B.1.1.700.000682
ORF1ab/nsp31103P1103LcCacTa22B.1.110.30.001437
ORF1ab/nsp31103P1103LcCacTa22B.1.1610.034483
ORF1ab/nsp31103P1103LcCacTa22B.1.177.110.003396
ORF1ab/nsp31103P1103LcCacTa22B.1.177.150.001262
ORF1ab/nsp31103P1103LcCacTa22B.1.177.330.003289
ORF1ab/nsp31103P1103LcCacTa22B.1.2800.014286
ORF1ab/nsp31103P1103LcCacTa22B.1.36.180.00084
ORF1ab/nsp31103P1103LcCacTa22B.1.3670.001585
ORF1ab/nsp31103P1103LcCacTa22B.1.4250.005988
ORF1ab/nsp31103P1103LcCacTa22B.1.4280.002041
ORF1ab/nsp31103P1103LcCacTa22B.1.5470.04878
ORF1ab/nsp31103P1103LcCacTa22B.1.5820.000981
ORF1ab/nsp31103P1103LcCacTa22B.1.6120.005305
ORF1ab/nsp31103P1103LcCacTa22C.360.001821
ORF1ab/nsp31103P1103LcCacTa22P.1.170.000324
ORF1ab/nsp31103P1103LcCacTa22P.1.70.000639
ORF1ab/nsp31103P1103LcCacTa22Q.30.00029
ORF1ab/nsp31103P1103LcCacTa11A0.000387
ORF1ab/nsp31103P1103LcCacTa11A.2.50.000499
ORF1ab/nsp31103P1103LcCacTa11A.290.005319
ORF1ab/nsp31103P1103LcCacTa11AY.10.000396
ORF1ab/nsp31103P1103LcCacTa11AY.1090.00074
ORF1ab/nsp31103P1103LcCacTa11AY.1140.000231
ORF1ab/nsp31103P1103LcCacTa11AY.1160.000287
ORF1ab/nsp31103P1103LcCacTa11AY.120.000316
ORF1ab/nsp31103P1103LcCacTa11AY.130.000161
ORF1ab/nsp31103P1103LcCacTa11AY.29.10.000221
ORF1ab/nsp31103P1103LcCacTa11AY.320.000532
ORF1ab/nsp31103P1103LcCacTa11AY.4.50.000107
ORF1ab/nsp31103P1103LcCacTa11AY.46.10.001027
ORF1ab/nsp31103P1103LcCacTa11AY.46.20.000635
ORF1ab/nsp31103P1103LcCacTa11AY.46.50.000198
ORF1ab/nsp31103P1103LcCacTa11AY.490.003195
ORF1ab/nsp31103P1103LcCacTa11AY.5.30.000337
ORF1ab/nsp31103P1103LcCacTa11AY.510.000909
ORF1ab/nsp31103P1103LcCacTa11AY.580.000907
ORF1ab/nsp31103P1103LcCacTa11AY.670.000464
ORF1ab/nsp31103P1103LcCacTa11AY.700.000209
ORF1ab/nsp31103P1103LcCacTa11AY.770.001127
ORF1ab/nsp31103P1103LcCacTa11AY.790.001211
ORF1ab/nsp31103P1103LcCacTa11AY.930.000273
ORF1ab/nsp31103P1103LcCacTa11AY.99.20.000092
ORF1ab/nsp31103P1103LcCacTa11AZ.20.000821
ORF1ab/nsp31103P1103LcCacTa11B.1.1.1010.01
ORF1ab/nsp31103P1103LcCacTa11B.1.1.1340.011364
ORF1ab/nsp31103P1103LcCacTa11B.1.1.1700.001247
ORF1ab/nsp31103P1103LcCacTa11B.1.1.1890.001513
ORF1ab/nsp31103P1103LcCacTa11B.1.1.1920.002309
ORF1ab/nsp31103P1103LcCacTa11B.1.1.2440.015385
ORF1ab/nsp31103P1103LcCacTa11B.1.1.250.000569
ORF1ab/nsp31103P1103LcCacTa11B.1.1.2630.001558
ORF1ab/nsp31103P1103LcCacTa11B.1.1.2690.001353
ORF1ab/nsp31103P1103LcCacTa11B.1.1.2740.005051
ORF1ab/nsp31103P1103LcCacTa11B.1.1.2910.000742
ORF1ab/nsp31103P1103LcCacTa11B.1.1.2980.000862
ORF1ab/nsp31103P1103LcCacTa11B.1.1.3740.002375
ORF1ab/nsp31103P1103LcCacTa11B.1.1.390.00051
ORF1ab/nsp31103P1103LcCacTa11B.1.1.3980.003226
ORF1ab/nsp31103P1103LcCacTa11B.1.1.4160.000905
ORF1ab/nsp31103P1103LcCacTa11B.1.1.4480.002033
ORF1ab/nsp31103P1103LcCacTa11B.1.1.630.000386
ORF1ab/nsp31103P1103LcCacTa11B.1.1620.005025
ORF1ab/nsp31103P1103LcCacTa11B.1.177.100.000878
ORF1ab/nsp31103P1103LcCacTa11B.1.177.120.000152
ORF1ab/nsp31103P1103LcCacTa11B.1.177.460.000918
ORF1ab/nsp31103P1103LcCacTa11B.1.177.580.001332
ORF1ab/nsp31103P1103LcCacTa11B.1.177.650.000665
ORF1ab/nsp31103P1103LcCacTa11B.1.177.730.000566
ORF1ab/nsp31103P1103LcCacTa11B.1.177.750.001041
ORF1ab/nsp31103P1103LcCacTa11B.1.177.790.002342
ORF1ab/nsp31103P1103LcCacTa11B.1.1890.004292
ORF1ab/nsp31103P1103LcCacTa11B.1.2060.000816
ORF1ab/nsp31103P1103LcCacTa11B.1.2100.002132
ORF1ab/nsp31103P1103LcCacTa11B.1.214.20.0006
ORF1ab/nsp31103P1103LcCacTa11B.1.2200.01087
ORF1ab/nsp31103P1103LcCacTa11B.1.2390.001221
ORF1ab/nsp31103P1103LcCacTa11B.1.258.110.000396
ORF1ab/nsp31103P1103LcCacTa11B.1.258.140.00098
ORF1ab/nsp31103P1103LcCacTa11B.1.2670.018519
ORF1ab/nsp31103P1103LcCacTa11B.1.2790.000514
ORF1ab/nsp31103P1103LcCacTa11B.1.3100.047619
ORF1ab/nsp31103P1103LcCacTa11B.1.36.100.004785
ORF1ab/nsp31103P1103LcCacTa11B.1.36.190.009259
ORF1ab/nsp31103P1103LcCacTa11B.1.36.220.001208
ORF1ab/nsp31103P1103LcCacTa11B.1.36.350.002604
ORF1ab/nsp31103P1103LcCacTa11B.1.3610.001289
ORF1ab/nsp31103P1103LcCacTa11B.1.3690.000285
ORF1ab/nsp31103P1103LcCacTa11B.1.3710.001122
ORF1ab/nsp31103P1103LcCacTa11B.1.3750.00082
ORF1ab/nsp31103P1103LcCacTa11B.1.3780.006849
ORF1ab/nsp31103P1103LcCacTa11B.1.3970.004854
ORF1ab/nsp31103P1103LcCacTa11B.1.3990.001934
ORF1ab/nsp31103P1103LcCacTa11B.1.4000.000429
ORF1ab/nsp31103P1103LcCacTa11B.1.416.10.001563
ORF1ab/nsp31103P1103LcCacTa11B.1.4260.001009
ORF1ab/nsp31103P1103LcCacTa11B.1.438.10.000107
ORF1ab/nsp31103P1103LcCacTa11B.1.438.20.019231
ORF1ab/nsp31103P1103LcCacTa11B.1.4560.003268
ORF1ab/nsp31103P1103LcCacTa11B.1.466.20.000391
ORF1ab/nsp31103P1103LcCacTa11B.1.4700.001404
ORF1ab/nsp31103P1103LcCacTa11B.1.4730.019231
ORF1ab/nsp31103P1103LcCacTa11B.1.5330.009615
ORF1ab/nsp31103P1103LcCacTa11B.1.5370.02
ORF1ab/nsp31103P1103LcCacTa11B.1.5400.009709
ORF1ab/nsp31103P1103LcCacTa11B.1.5460.003704
ORF1ab/nsp31103P1103LcCacTa11B.1.5610.000397
ORF1ab/nsp31103P1103LcCacTa11B.1.5640.000426
ORF1ab/nsp31103P1103LcCacTa11B.1.5770.000687
ORF1ab/nsp31103P1103LcCacTa11B.1.621.10.000506
ORF1ab/nsp31103P1103LcCacTa11B.1.6230.000536
ORF1ab/nsp31103P1103LcCacTa11B.1.6280.000352
ORF1ab/nsp31103P1103LcCacTa11B.1.780.008547
ORF1ab/nsp31103P1103LcCacTa11B.1.90.006173
ORF1ab/nsp31103P1103LcCacTa11B.60.00091
ORF1ab/nsp31103P1103LcCacTa11B.6.60.000889
ORF1ab/nsp31103P1103LcCacTa11C.300.001727
ORF1ab/nsp31103P1103LcCacTa11C.350.000774
ORF1ab/nsp31103P1103LcCacTa11C.390.018868
ORF1ab/nsp31103P1103LcCacTa11D.20.000075
ORF1ab/nsp31103P1103LcCacTa11N.50.001767
ORF1ab/nsp31103P1103LcCacTa11N.60.007092
ORF1ab/nsp31103P1103LcCacTa11P.1.10.000318
ORF1ab/nsp31103P1103LcCacTa11Q.40.000455

CoV-GLUE is still in development. CoV-GLUE was originally developed as part of COG-UK by Josh Singer using the GLUE framework at the MRC-University of Glasgow Centre for Virus Research (CVR). In 2021 it was redeveloped by Richard Orton to scale to the millions of genome sequences available. We acknowledge support from the MRC (MC_UU_12014/12), WT (220977/Z/20/Z) and UKRI G2P (MR/W005611/1). Please contact Richard Orton with any queries: Richard.Orton@glasgow.ac.uk

CoV-GLUE uses sequence data from GISAID. GISAID data provided via this web application is subject to GISAID's Terms and Conditions.