CoV-GLUEGenomeCountriesLineagesMutationsInsertionsDeletionsUpdated:

CoV-GLUE | Mutations | Mutation

CoV-GLUE Mutation: ORF = ORF1ab/nsp3 : CodonNum = 1103 & Codon = cAa

Details of the codons used for the mutation across all lineages (CodonProp is the proportion each codon is used for this AA mutation):

ORFCodonNumMutORF1abMutMutTypeRefCodonMutCodonAACountCodonCountCodonPropGenome Position
ORF1ab/nsp31103P1103QP1921QnonsyncCacAa11974119730.9999166026-6028

Details of the mutation no within lineages (LineageCodonProp is the proportion the codon is observed at, at this particular site, on each lineage):

ORFCodonNumMutRefCodonMutCodonCodonCountAACountLineageLineageCodonProp
ORF1ab/nsp31103P1103QcCacAa1197311974All0.00229
ORF1ab/nsp31103P1103QcCacAa55535554B.1.617.20.020909
ORF1ab/nsp31103P1103QcCacAa41104110AY.350.957819
ORF1ab/nsp31103P1103QcCacAa373373AY.250.002244
ORF1ab/nsp31103P1103QcCacAa252252AY.16.10.118421
ORF1ab/nsp31103P1103QcCacAa231231AY.480.107442
ORF1ab/nsp31103P1103QcCacAa185185AY.290.002918
ORF1ab/nsp31103P1103QcCacAa178178AY.440.001083
ORF1ab/nsp31103P1103QcCacAa148148B.1.1.1700.184539
ORF1ab/nsp31103P1103QcCacAa141141AY.230.009835
ORF1ab/nsp31103P1103QcCacAa116116AY.130.018674
ORF1ab/nsp31103P1103QcCacAa7272AY.1080.079383
ORF1ab/nsp31103P1103QcCacAa4646B.1.1770.000606
ORF1ab/nsp31103P1103QcCacAa4444AY.30.000438
ORF1ab/nsp31103P1103QcCacAa4040AY.660.042781
ORF1ab/nsp31103P1103QcCacAa3333B.1.1.70.00003
ORF1ab/nsp31103P1103QcCacAa3030AY.190.034208
ORF1ab/nsp31103P1103QcCacAa2727AY.40.000042
ORF1ab/nsp31103P1103QcCacAa2626B.10.000238
ORF1ab/nsp31103P1103QcCacAa2525C.370.002902
ORF1ab/nsp31103P1103QcCacAa2020AY.5.40.005534
ORF1ab/nsp31103P1103QcCacAa1818AY.1160.005162
ORF1ab/nsp31103P1103QcCacAa1616AY.680.00438
ORF1ab/nsp31103P1103QcCacAa1414AY.1030.000087
ORF1ab/nsp31103P1103QcCacAa1414AY.520.011401
ORF1ab/nsp31103P1103QcCacAa1313AY.430.000058
ORF1ab/nsp31103P1103QcCacAa1111AY.470.000342
ORF1ab/nsp31103P1103QcCacAa1010AY.540.000953
ORF1ab/nsp31103P1103QcCacAa99AY.240.003879
ORF1ab/nsp31103P1103QcCacAa99AY.330.000601
ORF1ab/nsp31103P1103QcCacAa99AY.610.000943
ORF1ab/nsp31103P1103QcCacAa99AY.750.000504
ORF1ab/nsp31103P1103QcCacAa88AY.1180.000501
ORF1ab/nsp31103P1103QcCacAa88AY.620.003486
ORF1ab/nsp31103P1103QcCacAa88AY.98.10.000387
ORF1ab/nsp31103P1103QcCacAa88B.1.220.01054
ORF1ab/nsp31103P1103QcCacAa77AY.50.000145
ORF1ab/nsp31103P1103QcCacAa66AY.1170.000507
ORF1ab/nsp31103P1103QcCacAa66AY.390.000148
ORF1ab/nsp31103P1103QcCacAa66AY.450.00073
ORF1ab/nsp31103P1103QcCacAa66AY.770.006764
ORF1ab/nsp31103P1103QcCacAa66B.1.1.3680.018519
ORF1ab/nsp31103P1103QcCacAa55AY.550.004587
ORF1ab/nsp31103P1103QcCacAa55B.1.20.000044
ORF1ab/nsp31103P1103QcCacAa55B.1.4700.007022
ORF1ab/nsp31103P1103QcCacAa44AY.1000.000184
ORF1ab/nsp31103P1103QcCacAa44AY.360.000593
ORF1ab/nsp31103P1103QcCacAa44AY.870.003331
ORF1ab/nsp31103P1103QcCacAa44AY.880.003537
ORF1ab/nsp31103P1103QcCacAa44AY.9.20.000147
ORF1ab/nsp31103P1103QcCacAa33AY.1020.00008
ORF1ab/nsp31103P1103QcCacAa33AY.220.006276
ORF1ab/nsp31103P1103QcCacAa33AY.4.20.000065
ORF1ab/nsp31103P1103QcCacAa33AY.60.000123
ORF1ab/nsp31103P1103QcCacAa33AY.920.000862
ORF1ab/nsp31103P1103QcCacAa33AY.980.000237
ORF1ab/nsp31103P1103QcCacAa33B.1.10.000054
ORF1ab/nsp31103P1103QcCacAa33B.1.1.2140.000166
ORF1ab/nsp31103P1103QcCacAa33B.1.4800.007463
ORF1ab/nsp31103P1103QcCacAa33B.30.002492
ORF1ab/nsp31103P1103QcCacAa22AY.1060.00067
ORF1ab/nsp31103P1103QcCacAa22AY.1200.000074
ORF1ab/nsp31103P1103QcCacAa22AY.260.000057
ORF1ab/nsp31103P1103QcCacAa22AY.370.000632
ORF1ab/nsp31103P1103QcCacAa22AY.400.001929
ORF1ab/nsp31103P1103QcCacAa22AY.460.000208
ORF1ab/nsp31103P1103QcCacAa22AY.640.00119
ORF1ab/nsp31103P1103QcCacAa22AY.700.000417
ORF1ab/nsp31103P1103QcCacAa22B0.000256
ORF1ab/nsp31103P1103QcCacAa22B.1.1.2800.006173
ORF1ab/nsp31103P1103QcCacAa22B.1.160.160.001859
ORF1ab/nsp31103P1103QcCacAa22B.1.3200.002491
ORF1ab/nsp31103P1103QcCacAa22B.1.5170.000854
ORF1ab/nsp31103P1103QcCacAa22B.1.5250.000226
ORF1ab/nsp31103P1103QcCacAa11AY.100.00053
ORF1ab/nsp31103P1103QcCacAa11AY.1190.000035
ORF1ab/nsp31103P1103QcCacAa11AY.120.000316
ORF1ab/nsp31103P1103QcCacAa11AY.200.000039
ORF1ab/nsp31103P1103QcCacAa11AY.270.000065
ORF1ab/nsp31103P1103QcCacAa11AY.280.00189
ORF1ab/nsp31103P1103QcCacAa11AY.29.10.000221
ORF1ab/nsp31103P1103QcCacAa11AY.4.30.000842
ORF1ab/nsp31103P1103QcCacAa11AY.410.000294
ORF1ab/nsp31103P1103QcCacAa11AY.46.60.000072
ORF1ab/nsp31103P1103QcCacAa11AY.490.003195
ORF1ab/nsp31103P1103QcCacAa11AY.580.000907
ORF1ab/nsp31103P1103QcCacAa11AY.650.000533
ORF1ab/nsp31103P1103QcCacAa11AY.670.000464
ORF1ab/nsp31103P1103QcCacAa11AY.710.000475
ORF1ab/nsp31103P1103QcCacAa11AY.75.10.00018
ORF1ab/nsp31103P1103QcCacAa11AY.820.001357
ORF1ab/nsp31103P1103QcCacAa11AY.910.00073
ORF1ab/nsp31103P1103QcCacAa11AY.960.002075
ORF1ab/nsp31103P1103QcCacAa11B.1.1.100.001115
ORF1ab/nsp31103P1103QcCacAa11B.1.1.2940.001266
ORF1ab/nsp31103P1103QcCacAa11B.1.1.5190.00004
ORF1ab/nsp31103P1103QcCacAa11B.1.1.720.030303
ORF1ab/nsp31103P1103QcCacAa11B.1.177.560.000668
ORF1ab/nsp31103P1103QcCacAa11B.1.2360.002053
ORF1ab/nsp31103P1103QcCacAa11B.1.360.000146
ORF1ab/nsp31103P1103QcCacAa11B.1.4270.00005
ORF1ab/nsp31103P1103QcCacAa11B.1.6090.000479
ORF1ab/nsp31103P1103QcCacAa11P.10.000016

CoV-GLUE is still in development. CoV-GLUE was originally developed as part of COG-UK by Josh Singer using the GLUE framework at the MRC-University of Glasgow Centre for Virus Research (CVR). In 2021 it was redeveloped by Richard Orton to scale to the millions of genome sequences available. We acknowledge support from the MRC (MC_UU_12014/12), WT (220977/Z/20/Z) and UKRI G2P (MR/W005611/1). Please contact Richard Orton with any queries: Richard.Orton@glasgow.ac.uk

CoV-GLUE uses sequence data from GISAID. GISAID data provided via this web application is subject to GISAID's Terms and Conditions.