CoV-GLUE | Mutations | Mutation
Details of the codons used for the mutation across all lineages (CodonProp is the proportion each codon is used for this AA mutation):
ORF | CodonNum | Mut | ORF1abMut | MutType | RefCodon | MutCodon | AACount | CodonCount | CodonProp | Genome Position |
ORF1ab/nsp3 | 1103 | P1103Q | P1921Q | nonsyn | cCa | cAa | 11974 | 11973 | 0.999916 | 6026-6028 |
ORF1ab/nsp3 | 1103 | P1103Q | P1921Q | nonsyn | cCA | cAG | 11974 | 1 | 0.0000835143 | 6026-6028 |
ORF1ab/nsp3 | 1103 | P1103S | P1921S | nonsyn | Cca | Tca | 8603 | 8603 | 1 | 6026-6028 |
ORF1ab/nsp3 | 1103 | P1103L | P1921L | nonsyn | cCa | cTa | 8231 | 8210 | 0.997449 | 6026-6028 |
ORF1ab/nsp3 | 1103 | P1103L | P1921L | nonsyn | CCa | TTa | 8231 | 14 | 0.00170089 | 6026-6028 |
ORF1ab/nsp3 | 1103 | P1103L | P1921L | nonsyn | cCA | cTG | 8231 | 3 | 0.000364476 | 6026-6028 |
ORF1ab/nsp3 | 1103 | P1103L | P1921L | nonsyn | CCA | TTG | 8231 | 2 | 0.000242984 | 6026-6028 |
ORF1ab/nsp3 | 1103 | P1103L | P1921L | nonsyn | cCA | cTC | 8231 | 1 | 0.000121492 | 6026-6028 |
ORF1ab/nsp3 | 1103 | P1103L | P1921L | nonsyn | cCA | cTT | 8231 | 1 | 0.000121492 | 6026-6028 |
ORF1ab/nsp3 | 1103 | P1103T | P1921T | nonsyn | Cca | Aca | 972 | 972 | 1 | 6026-6028 |
ORF1ab/nsp3 | 1103 | P1103P | P1921P | syn | ccA | ccG | 512 | 364 | 0.710938 | 6026-6028 |
ORF1ab/nsp3 | 1103 | P1103P | P1921P | syn | ccA | ccC | 512 | 119 | 0.232422 | 6026-6028 |
ORF1ab/nsp3 | 1103 | P1103P | P1921P | syn | ccA | ccT | 512 | 29 | 0.0566406 | 6026-6028 |
ORF1ab/nsp3 | 1103 | P1103del | P1921del | del | CCA | --- | 93 | 93 | 1 | 6026-6028 |
ORF1ab/nsp3 | 1103 | P1103A | P1921A | nonsyn | Cca | Gca | 41 | 41 | 1 | 6026-6028 |
ORF1ab/nsp3 | 1103 | P1103R | P1921R | nonsyn | cCa | cGa | 23 | 21 | 0.913043 | 6026-6028 |
ORF1ab/nsp3 | 1103 | P1103R | P1921R | nonsyn | cCA | cGT | 23 | 1 | 0.0434783 | 6026-6028 |
ORF1ab/nsp3 | 1103 | P1103R | P1921R | nonsyn | CCa | AGa | 23 | 1 | 0.0434783 | 6026-6028 |
ORF1ab/nsp3 | 1103 | P1103del1 | P1921del1 | del | ccA | cc- | 13 | 6 | 0.461538 | 6026-6028 |
ORF1ab/nsp3 | 1103 | P1103del1 | P1921del1 | del | Cca | -ca | 13 | 6 | 0.461538 | 6026-6028 |
ORF1ab/nsp3 | 1103 | P1103del1 | P1921del1 | del | cCA | cT- | 13 | 1 | 0.0769231 | 6026-6028 |
ORF1ab/nsp3 | 1103 | P1103K | P1921K | nonsyn | CCa | AAa | 5 | 5 | 1 | 6026-6028 |
ORF1ab/nsp3 | 1103 | P1103del2 | P1921del2 | del | cCA | c-- | 4 | 4 | 1 | 6026-6028 |
ORF1ab/nsp3 | 1103 | P1103I | P1921I | nonsyn | CCa | ATa | 1 | 1 | 1 | 6026-6028 |
Details of the mutation no within lineages (LineageCodonProp is the proportion the codon is observed at, at this particular site, on each lineage):
ORF | CodonNum | Mut | RefCodon | MutCodon | CodonCount | AACount | Lineage | LineageCodonProp |
ORF1ab/nsp3 | 1103 | P1103Q | cCa | cAa | 11973 | 11974 | All | 0.00229 |
ORF1ab/nsp3 | 1103 | P1103Q | cCA | cAG | 1 | 11974 | All | 0 |
ORF1ab/nsp3 | 1103 | P1103S | Cca | Tca | 8603 | 8603 | All | 0.001645 |
ORF1ab/nsp3 | 1103 | P1103L | cCa | cTa | 8210 | 8231 | All | 0.00157 |
ORF1ab/nsp3 | 1103 | P1103L | CCa | TTa | 14 | 8231 | All | 0.000003 |
ORF1ab/nsp3 | 1103 | P1103L | cCA | cTG | 3 | 8231 | All | 0.000001 |
ORF1ab/nsp3 | 1103 | P1103L | CCA | TTG | 2 | 8231 | All | 0 |
ORF1ab/nsp3 | 1103 | P1103L | cCA | cTT | 1 | 8231 | All | 0 |
ORF1ab/nsp3 | 1103 | P1103L | cCA | cTC | 1 | 8231 | All | 0 |
ORF1ab/nsp3 | 1103 | P1103Q | cCa | cAa | 5553 | 5554 | B.1.617.2 | 0.020909 |
ORF1ab/nsp3 | 1103 | P1103Q | cCA | cAG | 1 | 5554 | B.1.617.2 | 0.000004 |
ORF1ab/nsp3 | 1103 | P1103Q | cCa | cAa | 4110 | 4110 | AY.35 | 0.957819 |
ORF1ab/nsp3 | 1103 | P1103S | Cca | Tca | 1527 | 1527 | AY.4 | 0.002377 |
ORF1ab/nsp3 | 1103 | P1103S | Cca | Tca | 1436 | 1436 | B.1.1.7 | 0.001286 |
ORF1ab/nsp3 | 1103 | P1103S | Cca | Tca | 1234 | 1234 | AY.26 | 0.034935 |
ORF1ab/nsp3 | 1103 | P1103L | cCa | cTa | 1196 | 1198 | B.1.1.7 | 0.001071 |
ORF1ab/nsp3 | 1103 | P1103L | CCa | TTa | 2 | 1198 | B.1.1.7 | 0.000002 |
ORF1ab/nsp3 | 1103 | P1103L | cCa | cTa | 992 | 992 | B.1.243 | 0.069028 |
ORF1ab/nsp3 | 1103 | P1103T | Cca | Aca | 972 | 972 | All | 0.000186 |
ORF1ab/nsp3 | 1103 | P1103T | Cca | Aca | 922 | 922 | AY.43 | 0.004085 |
ORF1ab/nsp3 | 1103 | P1103L | cCa | cTa | 802 | 803 | AY.43 | 0.003553 |
ORF1ab/nsp3 | 1103 | P1103L | CCa | TTa | 1 | 803 | AY.43 | 0.000004 |
ORF1ab/nsp3 | 1103 | P1103L | cCa | cTa | 609 | 609 | AY.4 | 0.000948 |
ORF1ab/nsp3 | 1103 | P1103P | ccA | ccG | 364 | 512 | All | 0.00007 |
ORF1ab/nsp3 | 1103 | P1103P | ccA | ccC | 119 | 512 | All | 0.000023 |
ORF1ab/nsp3 | 1103 | P1103P | ccA | ccT | 29 | 512 | All | 0.000006 |
ORF1ab/nsp3 | 1103 | P1103S | Cca | Tca | 396 | 396 | AY.25 | 0.002382 |
ORF1ab/nsp3 | 1103 | P1103S | Cca | Tca | 387 | 387 | B.1.526 | 0.009096 |
ORF1ab/nsp3 | 1103 | P1103Q | cCa | cAa | 373 | 373 | AY.25 | 0.002244 |
ORF1ab/nsp3 | 1103 | P1103S | Cca | Tca | 361 | 361 | AY.43 | 0.001599 |
ORF1ab/nsp3 | 1103 | P1103S | Cca | Tca | 285 | 285 | B.1.497 | 0.089707 |
ORF1ab/nsp3 | 1103 | P1103L | cCa | cTa | 272 | 272 | AY.42 | 0.010943 |
ORF1ab/nsp3 | 1103 | P1103L | cCa | cTa | 265 | 265 | AY.6 | 0.010899 |
ORF1ab/nsp3 | 1103 | P1103L | cCa | cTa | 258 | 260 | B.1.617.2 | 0.000971 |
ORF1ab/nsp3 | 1103 | P1103L | cCA | cTC | 1 | 260 | B.1.617.2 | 0.000004 |
ORF1ab/nsp3 | 1103 | P1103L | cCA | cTG | 1 | 260 | B.1.617.2 | 0.000004 |
ORF1ab/nsp3 | 1103 | P1103Q | cCa | cAa | 252 | 252 | AY.16.1 | 0.118421 |
ORF1ab/nsp3 | 1103 | P1103L | cCa | cTa | 252 | 252 | B.1.177.77 | 0.183007 |
ORF1ab/nsp3 | 1103 | P1103Q | cCa | cAa | 231 | 231 | AY.48 | 0.107442 |
ORF1ab/nsp3 | 1103 | P1103L | cCa | cTa | 223 | 224 | B.1 | 0.002043 |
ORF1ab/nsp3 | 1103 | P1103L | cCA | cTT | 1 | 224 | B.1 | 0.000009 |
ORF1ab/nsp3 | 1103 | P1103L | cCa | cTa | 191 | 191 | B.1.2 | 0.001682 |
ORF1ab/nsp3 | 1103 | P1103Q | cCa | cAa | 185 | 185 | AY.29 | 0.002918 |
ORF1ab/nsp3 | 1103 | P1103L | cCa | cTa | 180 | 180 | B.1.177 | 0.00237 |
ORF1ab/nsp3 | 1103 | P1103Q | cCa | cAa | 178 | 178 | AY.44 | 0.001083 |
ORF1ab/nsp3 | 1103 | P1103P | ccA | ccG | 174 | 174 | B.1.1.318 | 0.052505 |
ORF1ab/nsp3 | 1103 | P1103L | cCa | cTa | 169 | 169 | AY.26 | 0.004784 |
ORF1ab/nsp3 | 1103 | P1103S | Cca | Tca | 154 | 154 | B.1.177.9 | 0.20506 |
ORF1ab/nsp3 | 1103 | P1103S | Cca | Tca | 151 | 151 | B.1.617.2 | 0.000569 |
ORF1ab/nsp3 | 1103 | P1103S | Cca | Tca | 150 | 150 | B.1.1 | 0.002721 |
ORF1ab/nsp3 | 1103 | P1103Q | cCa | cAa | 148 | 148 | B.1.1.170 | 0.184539 |
ORF1ab/nsp3 | 1103 | P1103L | cCa | cTa | 148 | 148 | B.1.221 | 0.010513 |
ORF1ab/nsp3 | 1103 | P1103S | Cca | Tca | 145 | 145 | AY.39 | 0.003583 |
ORF1ab/nsp3 | 1103 | P1103Q | cCa | cAa | 141 | 141 | AY.23 | 0.009835 |
ORF1ab/nsp3 | 1103 | P1103L | cCa | cTa | 129 | 129 | B.1.525 | 0.014598 |
ORF1ab/nsp3 | 1103 | P1103Q | cCa | cAa | 116 | 116 | AY.13 | 0.018674 |
ORF1ab/nsp3 | 1103 | P1103S | Cca | Tca | 115 | 115 | B.1.160 | 0.003587 |
ORF1ab/nsp3 | 1103 | P1103L | cCa | cTa | 114 | 114 | AY.3 | 0.001134 |
ORF1ab/nsp3 | 1103 | P1103S | Cca | Tca | 113 | 113 | B.1.177 | 0.001488 |
ORF1ab/nsp3 | 1103 | P1103P | ccA | ccC | 88 | 110 | B.1.617.2 | 0.000331 |
ORF1ab/nsp3 | 1103 | P1103P | ccA | ccG | 20 | 110 | B.1.617.2 | 0.000075 |
ORF1ab/nsp3 | 1103 | P1103P | ccA | ccT | 2 | 110 | B.1.617.2 | 0.000008 |
ORF1ab/nsp3 | 1103 | P1103L | cCa | cTa | 102 | 102 | AY.34 | 0.00989 |
ORF1ab/nsp3 | 1103 | P1103S | Cca | Tca | 96 | 96 | B.1 | 0.000879 |
ORF1ab/nsp3 | 1103 | P1103S | Cca | Tca | 95 | 95 | P.1 | 0.001497 |
ORF1ab/nsp3 | 1103 | P1103L | cCa | cTa | 94 | 94 | B.1.237 | 0.467662 |
ORF1ab/nsp3 | 1103 | P1103del | CCA | --- | 93 | 93 | All | 0.000018 |
ORF1ab/nsp3 | 1103 | P1103S | Cca | Tca | 92 | 92 | B.1.2 | 0.00081 |
ORF1ab/nsp3 | 1103 | P1103S | Cca | Tca | 91 | 91 | AY.103 | 0.000565 |
ORF1ab/nsp3 | 1103 | P1103S | Cca | Tca | 91 | 91 | B.1.595.4 | 0.664234 |
ORF1ab/nsp3 | 1103 | P1103L | cCa | cTa | 88 | 88 | P.1.14 | 0.004207 |
ORF1ab/nsp3 | 1103 | P1103L | cCa | cTa | 85 | 85 | AY.103 | 0.000528 |
ORF1ab/nsp3 | 1103 | P1103L | cCa | cTa | 85 | 85 | AY.44 | 0.000517 |
ORF1ab/nsp3 | 1103 | P1103L | cCa | cTa | 84 | 84 | AY.25 | 0.000505 |
ORF1ab/nsp3 | 1103 | P1103L | cCa | cTa | 81 | 81 | AY.101 | 0.039725 |
ORF1ab/nsp3 | 1103 | P1103L | cCa | cTa | 79 | 79 | B.1.427 | 0.003989 |
ORF1ab/nsp3 | 1103 | P1103Q | cCa | cAa | 72 | 72 | AY.108 | 0.079383 |
ORF1ab/nsp3 | 1103 | P1103S | Cca | Tca | 67 | 67 | AY.44 | 0.000408 |
ORF1ab/nsp3 | 1103 | P1103S | Cca | Tca | 67 | 67 | AY.5 | 0.001383 |
ORF1ab/nsp3 | 1103 | P1103S | Cca | Tca | 61 | 61 | B.1.1.519 | 0.002422 |
ORF1ab/nsp3 | 1103 | P1103L | cCa | cTa | 61 | 61 | P.1 | 0.000961 |
ORF1ab/nsp3 | 1103 | P1103P | ccA | ccG | 60 | 60 | AY.103 | 0.000373 |
ORF1ab/nsp3 | 1103 | P1103L | cCa | cTa | 59 | 59 | B | 0.007541 |
ORF1ab/nsp3 | 1103 | P1103S | Cca | Tca | 56 | 56 | B.1.595 | 0.014614 |
ORF1ab/nsp3 | 1103 | P1103L | cCa | cTa | 55 | 55 | B.1.1.519 | 0.002184 |
ORF1ab/nsp3 | 1103 | P1103P | ccA | ccG | 55 | 55 | B.1.628 | 0.01938 |
ORF1ab/nsp3 | 1103 | P1103L | cCa | cTa | 54 | 54 | B.1.234 | 0.007125 |
ORF1ab/nsp3 | 1103 | P1103L | cCa | cTa | 53 | 53 | B.1.36 | 0.007733 |
ORF1ab/nsp3 | 1103 | P1103S | Cca | Tca | 53 | 53 | B.1.36 | 0.007733 |
ORF1ab/nsp3 | 1103 | P1103S | Cca | Tca | 51 | 51 | B.1.1.70 | 0.017394 |
ORF1ab/nsp3 | 1103 | P1103L | cCa | cTa | 50 | 50 | AY.16 | 0.018983 |
ORF1ab/nsp3 | 1103 | P1103L | cCa | cTa | 49 | 49 | AY.117 | 0.004141 |
ORF1ab/nsp3 | 1103 | P1103L | cCa | cTa | 49 | 49 | AY.39 | 0.001211 |
ORF1ab/nsp3 | 1103 | P1103S | Cca | Tca | 47 | 47 | AY.3 | 0.000467 |
ORF1ab/nsp3 | 1103 | P1103L | cCa | cTa | 46 | 47 | B.1.1 | 0.000834 |
ORF1ab/nsp3 | 1103 | P1103L | CCa | TTa | 1 | 47 | B.1.1 | 0.000018 |
ORF1ab/nsp3 | 1103 | P1103S | Cca | Tca | 46 | 46 | B.1.1.326 | 0.080986 |
ORF1ab/nsp3 | 1103 | P1103Q | cCa | cAa | 46 | 46 | B.1.177 | 0.000606 |
ORF1ab/nsp3 | 1103 | P1103Q | cCa | cAa | 44 | 44 | AY.3 | 0.000438 |
ORF1ab/nsp3 | 1103 | P1103S | Cca | Tca | 43 | 43 | AY.4.2 | 0.000933 |
ORF1ab/nsp3 | 1103 | P1103A | Cca | Gca | 41 | 41 | All | 0.000008 |
ORF1ab/nsp3 | 1103 | P1103Q | cCa | cAa | 40 | 40 | AY.66 | 0.042781 |
ORF1ab/nsp3 | 1103 | P1103L | cCa | cTa | 39 | 39 | B.1.1.326 | 0.068662 |
ORF1ab/nsp3 | 1103 | P1103L | cCa | cTa | 38 | 38 | AY.108 | 0.041896 |
ORF1ab/nsp3 | 1103 | P1103S | Cca | Tca | 38 | 38 | B.1.1.289 | 0.079167 |
ORF1ab/nsp3 | 1103 | P1103del | CCA | --- | 38 | 38 | B.1.1.7 | 0.000034 |
ORF1ab/nsp3 | 1103 | P1103L | cCa | cTa | 36 | 36 | AY.113 | 0.005126 |
ORF1ab/nsp3 | 1103 | P1103S | Cca | Tca | 36 | 36 | AY.27 | 0.00233 |
ORF1ab/nsp3 | 1103 | P1103S | Cca | Tca | 36 | 36 | AY.80 | 0.040632 |
ORF1ab/nsp3 | 1103 | P1103S | Cca | Tca | 35 | 35 | B.1.1.369 | 0.015618 |
ORF1ab/nsp3 | 1103 | P1103L | cCa | cTa | 35 | 35 | B.1.160 | 0.001092 |
ORF1ab/nsp3 | 1103 | P1103S | Cca | Tca | 35 | 35 | B.1.429 | 0.000824 |
ORF1ab/nsp3 | 1103 | P1103L | cCa | cTa | 34 | 34 | AY.75 | 0.001905 |
ORF1ab/nsp3 | 1103 | P1103Q | cCa | cAa | 33 | 33 | B.1.1.7 | 0.00003 |
ORF1ab/nsp3 | 1103 | P1103L | cCa | cTa | 31 | 31 | B.1.1.377 | 0.042818 |
ORF1ab/nsp3 | 1103 | P1103S | Cca | Tca | 30 | 30 | AY.102 | 0.000795 |
ORF1ab/nsp3 | 1103 | P1103Q | cCa | cAa | 30 | 30 | AY.19 | 0.034208 |
ORF1ab/nsp3 | 1103 | P1103L | cCa | cTa | 27 | 27 | AY.29 | 0.000426 |
ORF1ab/nsp3 | 1103 | P1103Q | cCa | cAa | 27 | 27 | AY.4 | 0.000042 |
ORF1ab/nsp3 | 1103 | P1103Q | cCa | cAa | 26 | 26 | B.1 | 0.000238 |
ORF1ab/nsp3 | 1103 | P1103L | cCa | cTa | 26 | 26 | B.1.429 | 0.000612 |
ORF1ab/nsp3 | 1103 | P1103Q | cCa | cAa | 25 | 25 | C.37 | 0.002902 |
ORF1ab/nsp3 | 1103 | P1103S | Cca | Tca | 24 | 24 | C.37 | 0.002786 |
ORF1ab/nsp3 | 1103 | P1103R | cCa | cGa | 21 | 23 | All | 0.000004 |
ORF1ab/nsp3 | 1103 | P1103R | CCa | AGa | 1 | 23 | All | 0 |
ORF1ab/nsp3 | 1103 | P1103R | cCA | cGT | 1 | 23 | All | 0 |
ORF1ab/nsp3 | 1103 | P1103S | Cca | Tca | 23 | 23 | AY.47 | 0.000715 |
ORF1ab/nsp3 | 1103 | P1103L | cCa | cTa | 23 | 23 | B.1.199 | 0.095041 |
ORF1ab/nsp3 | 1103 | P1103L | cCa | cTa | 23 | 23 | B.1.576 | 0.020852 |
ORF1ab/nsp3 | 1103 | P1103S | Cca | Tca | 22 | 22 | AY.20 | 0.000855 |
ORF1ab/nsp3 | 1103 | P1103S | Cca | Tca | 22 | 22 | B.1.1.464 | 0.032401 |
ORF1ab/nsp3 | 1103 | P1103L | cCa | cTa | 22 | 22 | B.1.177.32 | 0.02969 |
ORF1ab/nsp3 | 1103 | P1103L | cCa | cTa | 22 | 22 | B.1.177.60 | 0.004806 |
ORF1ab/nsp3 | 1103 | P1103S | Cca | Tca | 22 | 22 | B.1.351 | 0.000654 |
ORF1ab/nsp3 | 1103 | P1103L | cCa | cTa | 21 | 21 | AY.20 | 0.000816 |
ORF1ab/nsp3 | 1103 | P1103Q | cCa | cAa | 20 | 20 | AY.5.4 | 0.005534 |
ORF1ab/nsp3 | 1103 | P1103S | Cca | Tca | 20 | 20 | B.1.160.14 | 0.042373 |
ORF1ab/nsp3 | 1103 | P1103L | cCa | cTa | 20 | 20 | C.37 | 0.002321 |
ORF1ab/nsp3 | 1103 | P1103L | cCa | cTa | 19 | 19 | AY.107 | 0.008854 |
ORF1ab/nsp3 | 1103 | P1103L | cCa | cTa | 19 | 19 | AY.118 | 0.00119 |
ORF1ab/nsp3 | 1103 | P1103S | Cca | Tca | 19 | 19 | AY.45 | 0.002312 |
ORF1ab/nsp3 | 1103 | P1103L | cCa | cTa | 19 | 19 | AY.5 | 0.000392 |
ORF1ab/nsp3 | 1103 | P1103L | cCa | cTa | 19 | 19 | B.1.351 | 0.000565 |
ORF1ab/nsp3 | 1103 | P1103L | cCa | cTa | 19 | 19 | B.1.565 | 0.015397 |
ORF1ab/nsp3 | 1103 | P1103Q | cCa | cAa | 18 | 18 | AY.116 | 0.005162 |
ORF1ab/nsp3 | 1103 | P1103L | cCa | cTa | 18 | 18 | B.1.1.277 | 0.013657 |
ORF1ab/nsp3 | 1103 | P1103S | Cca | Tca | 18 | 18 | B.1.221 | 0.001279 |
ORF1ab/nsp3 | 1103 | P1103S | Cca | Tca | 18 | 18 | B.1.466.2 | 0.007042 |
ORF1ab/nsp3 | 1103 | P1103L | cCa | cTa | 17 | 17 | B.1.258 | 0.001131 |
ORF1ab/nsp3 | 1103 | P1103S | Cca | Tca | 17 | 17 | B.1.554 | 0.07489 |
ORF1ab/nsp3 | 1103 | P1103L | cCa | cTa | 17 | 17 | B.1.580 | 0.069106 |
ORF1ab/nsp3 | 1103 | P1103L | cCa | cTa | 16 | 16 | AY.2 | 0.005698 |
ORF1ab/nsp3 | 1103 | P1103L | cCa | cTa | 16 | 16 | AY.27 | 0.001036 |
ORF1ab/nsp3 | 1103 | P1103L | cCa | cTa | 16 | 16 | AY.45 | 0.001947 |
ORF1ab/nsp3 | 1103 | P1103Q | cCa | cAa | 16 | 16 | AY.68 | 0.00438 |
ORF1ab/nsp3 | 1103 | P1103S | Cca | Tca | 16 | 16 | B.1.1.348 | 0.012739 |
ORF1ab/nsp3 | 1103 | P1103S | Cca | Tca | 15 | 15 | AY.75 | 0.00084 |
ORF1ab/nsp3 | 1103 | P1103S | Cca | Tca | 15 | 15 | B.1.177.60 | 0.003277 |
ORF1ab/nsp3 | 1103 | P1103S | Cca | Tca | 15 | 15 | B.1.243 | 0.001044 |
ORF1ab/nsp3 | 1103 | P1103S | Cca | Tca | 14 | 14 | AY.100 | 0.000644 |
ORF1ab/nsp3 | 1103 | P1103Q | cCa | cAa | 14 | 14 | AY.103 | 0.000087 |
ORF1ab/nsp3 | 1103 | P1103Q | cCa | cAa | 14 | 14 | AY.52 | 0.011401 |
ORF1ab/nsp3 | 1103 | P1103P | ccA | ccG | 5 | 14 | B.1.1.7 | 0.000004 |
ORF1ab/nsp3 | 1103 | P1103P | ccA | ccT | 5 | 14 | B.1.1.7 | 0.000004 |
ORF1ab/nsp3 | 1103 | P1103P | ccA | ccC | 4 | 14 | B.1.1.7 | 0.000004 |
ORF1ab/nsp3 | 1103 | P1103L | cCa | cTa | 14 | 14 | B.1.517 | 0.005978 |
ORF1ab/nsp3 | 1103 | P1103S | Cca | Tca | 14 | 14 | C.36.3 | 0.007941 |
ORF1ab/nsp3 | 1103 | P1103S | Cca | Tca | 14 | 14 | P.1.7 | 0.00447 |
ORF1ab/nsp3 | 1103 | P1103del1 | Cca | -ca | 6 | 13 | All | 0.000001 |
ORF1ab/nsp3 | 1103 | P1103del1 | ccA | cc- | 6 | 13 | All | 0.000001 |
ORF1ab/nsp3 | 1103 | P1103del1 | cCA | cT- | 1 | 13 | All | 0 |
ORF1ab/nsp3 | 1103 | P1103L | cCa | cTa | 13 | 13 | AY.102 | 0.000345 |
ORF1ab/nsp3 | 1103 | P1103Q | cCa | cAa | 13 | 13 | AY.43 | 0.000058 |
ORF1ab/nsp3 | 1103 | P1103S | Cca | Tca | 13 | 13 | AY.46 | 0.001353 |
ORF1ab/nsp3 | 1103 | P1103S | Cca | Tca | 13 | 13 | B.1.1.222 | 0.002652 |
ORF1ab/nsp3 | 1103 | P1103L | cCa | cTa | 13 | 13 | B.1.1.284 | 0.001396 |
ORF1ab/nsp3 | 1103 | P1103S | Cca | Tca | 13 | 13 | B.1.1.388 | 0.590909 |
ORF1ab/nsp3 | 1103 | P1103T | Cca | Aca | 13 | 13 | B.1.1.7 | 0.000012 |
ORF1ab/nsp3 | 1103 | P1103L | cCa | cTa | 13 | 13 | B.1.637 | 0.00095 |
ORF1ab/nsp3 | 1103 | P1103S | Cca | Tca | 13 | 13 | P.1.17 | 0.002103 |
ORF1ab/nsp3 | 1103 | P1103S | Cca | Tca | 13 | 13 | Q.8 | 0.002144 |
ORF1ab/nsp3 | 1103 | P1103L | cCa | cTa | 12 | 12 | AY.119 | 0.000424 |
ORF1ab/nsp3 | 1103 | P1103L | cCa | cTa | 12 | 12 | B.1.1.306 | 0.005261 |
ORF1ab/nsp3 | 1103 | P1103S | Cca | Tca | 12 | 12 | B.1.525 | 0.001358 |
ORF1ab/nsp3 | 1103 | P1103A | Cca | Gca | 12 | 12 | B.1.526 | 0.000282 |
ORF1ab/nsp3 | 1103 | P1103L | cCa | cTa | 12 | 12 | B.1.596 | 0.001046 |
ORF1ab/nsp3 | 1103 | P1103S | Cca | Tca | 11 | 11 | AY.105 | 0.007074 |
ORF1ab/nsp3 | 1103 | P1103S | Cca | Tca | 11 | 11 | AY.13 | 0.001771 |
ORF1ab/nsp3 | 1103 | P1103S | Cca | Tca | 11 | 11 | AY.41 | 0.003233 |
ORF1ab/nsp3 | 1103 | P1103Q | cCa | cAa | 11 | 11 | AY.47 | 0.000342 |
ORF1ab/nsp3 | 1103 | P1103L | cCa | cTa | 11 | 11 | B.1.1.289 | 0.022917 |
ORF1ab/nsp3 | 1103 | P1103A | Cca | Gca | 11 | 11 | B.1.617.2 | 0.000041 |
ORF1ab/nsp3 | 1103 | P1103S | Cca | Tca | 10 | 10 | AY.113 | 0.001424 |
ORF1ab/nsp3 | 1103 | P1103S | Cca | Tca | 10 | 10 | AY.117 | 0.000845 |
ORF1ab/nsp3 | 1103 | P1103S | Cca | Tca | 10 | 10 | AY.29 | 0.000158 |
ORF1ab/nsp3 | 1103 | P1103S | Cca | Tca | 10 | 10 | AY.42 | 0.000402 |
ORF1ab/nsp3 | 1103 | P1103L | cCa | cTa | 10 | 10 | AY.54 | 0.000953 |
ORF1ab/nsp3 | 1103 | P1103Q | cCa | cAa | 10 | 10 | AY.54 | 0.000953 |
ORF1ab/nsp3 | 1103 | P1103L | cCa | cTa | 10 | 10 | AY.65 | 0.00533 |
ORF1ab/nsp3 | 1103 | P1103L | cCa | cTa | 10 | 10 | AY.88 | 0.008842 |
ORF1ab/nsp3 | 1103 | P1103S | Cca | Tca | 10 | 10 | B.1.1.291 | 0.007424 |
ORF1ab/nsp3 | 1103 | P1103L | cCa | cTa | 10 | 10 | B.1.1.318 | 0.003018 |
ORF1ab/nsp3 | 1103 | P1103S | Cca | Tca | 10 | 10 | B.1.1.39 | 0.005097 |
ORF1ab/nsp3 | 1103 | P1103L | cCa | cTa | 10 | 10 | B.1.126 | 0.012755 |
ORF1ab/nsp3 | 1103 | P1103L | CCa | TTa | 10 | 10 | B.1.497 | 0.003148 |
ORF1ab/nsp3 | 1103 | P1103L | cCa | cTa | 9 | 9 | AY.120 | 0.000335 |
ORF1ab/nsp3 | 1103 | P1103Q | cCa | cAa | 9 | 9 | AY.24 | 0.003879 |
ORF1ab/nsp3 | 1103 | P1103Q | cCa | cAa | 9 | 9 | AY.33 | 0.000601 |
ORF1ab/nsp3 | 1103 | P1103P | ccA | ccT | 4 | 9 | AY.4 | 0.000006 |
ORF1ab/nsp3 | 1103 | P1103P | ccA | ccG | 4 | 9 | AY.4 | 0.000006 |
ORF1ab/nsp3 | 1103 | P1103P | ccA | ccC | 1 | 9 | AY.4 | 0.000002 |
ORF1ab/nsp3 | 1103 | P1103L | cCa | cTa | 9 | 9 | AY.46.6 | 0.00065 |
ORF1ab/nsp3 | 1103 | P1103Q | cCa | cAa | 9 | 9 | AY.61 | 0.000943 |
ORF1ab/nsp3 | 1103 | P1103Q | cCa | cAa | 9 | 9 | AY.75 | 0.000504 |
ORF1ab/nsp3 | 1103 | P1103L | cCa | cTa | 9 | 9 | B.1.1.28 | 0.002801 |
ORF1ab/nsp3 | 1103 | P1103L | cCa | cTa | 9 | 9 | B.1.36.29 | 0.004656 |
ORF1ab/nsp3 | 1103 | P1103L | cCa | cTa | 9 | 9 | B.1.587 | 0.017078 |
ORF1ab/nsp3 | 1103 | P1103L | cCa | cTa | 9 | 9 | P.2 | 0.00168 |
ORF1ab/nsp3 | 1103 | P1103L | cCa | cTa | 9 | 9 | Q.7 | 0.01 |
ORF1ab/nsp3 | 1103 | P1103Q | cCa | cAa | 8 | 8 | AY.118 | 0.000501 |
ORF1ab/nsp3 | 1103 | P1103L | cCa | cTa | 8 | 8 | AY.23 | 0.000558 |
ORF1ab/nsp3 | 1103 | P1103S | Cca | Tca | 8 | 8 | AY.33 | 0.000534 |
ORF1ab/nsp3 | 1103 | P1103S | Cca | Tca | 8 | 8 | AY.4.5 | 0.00086 |
ORF1ab/nsp3 | 1103 | P1103P | ccA | ccG | 8 | 8 | AY.44 | 0.000049 |
ORF1ab/nsp3 | 1103 | P1103P | ccA | ccC | 8 | 8 | AY.46.5 | 0.001587 |
ORF1ab/nsp3 | 1103 | P1103Q | cCa | cAa | 8 | 8 | AY.62 | 0.003486 |
ORF1ab/nsp3 | 1103 | P1103S | Cca | Tca | 8 | 8 | AY.63 | 0.003095 |
ORF1ab/nsp3 | 1103 | P1103S | Cca | Tca | 8 | 8 | AY.69 | 0.001493 |
ORF1ab/nsp3 | 1103 | P1103Q | cCa | cAa | 8 | 8 | AY.98.1 | 0.000387 |
ORF1ab/nsp3 | 1103 | P1103S | Cca | Tca | 8 | 8 | B | 0.001022 |
ORF1ab/nsp3 | 1103 | P1103L | cCa | cTa | 8 | 8 | B.1.1.220 | 0.01487 |
ORF1ab/nsp3 | 1103 | P1103Q | cCa | cAa | 8 | 8 | B.1.22 | 0.01054 |
ORF1ab/nsp3 | 1103 | P1103S | Cca | Tca | 8 | 8 | B.1.234 | 0.001056 |
ORF1ab/nsp3 | 1103 | P1103S | Cca | Tca | 8 | 8 | B.1.258 | 0.000532 |
ORF1ab/nsp3 | 1103 | P1103L | cCa | cTa | 7 | 7 | AY.33 | 0.000467 |
ORF1ab/nsp3 | 1103 | P1103L | cCa | cTa | 7 | 7 | AY.36 | 0.001037 |
ORF1ab/nsp3 | 1103 | P1103Q | cCa | cAa | 7 | 7 | AY.5 | 0.000145 |
ORF1ab/nsp3 | 1103 | P1103S | Cca | Tca | 7 | 7 | AY.85 | 0.00299 |
ORF1ab/nsp3 | 1103 | P1103S | Cca | Tca | 7 | 7 | B.1.177.81 | 0.001325 |
ORF1ab/nsp3 | 1103 | P1103L | cCa | cTa | 7 | 7 | B.1.240 | 0.001509 |
ORF1ab/nsp3 | 1103 | P1103L | cCa | cTa | 7 | 7 | B.1.242 | 0.132075 |
ORF1ab/nsp3 | 1103 | P1103L | cCa | cTa | 7 | 7 | B.1.36.17 | 0.003458 |
ORF1ab/nsp3 | 1103 | P1103S | Cca | Tca | 7 | 7 | B.1.621 | 0.00062 |
ORF1ab/nsp3 | 1103 | P1103L | cCa | cTa | 7 | 7 | B.1.621 | 0.00062 |
ORF1ab/nsp3 | 1103 | P1103L | cCa | cTa | 7 | 7 | B.1.9.4 | 0.042945 |
ORF1ab/nsp3 | 1103 | P1103S | Cca | Tca | 7 | 7 | N.5 | 0.012367 |
ORF1ab/nsp3 | 1103 | P1103L | cCa | cTa | 7 | 7 | P.1.15 | 0.001626 |
ORF1ab/nsp3 | 1103 | P1103L | cCa | cTa | 7 | 7 | Q.1 | 0.000884 |
ORF1ab/nsp3 | 1103 | P1103S | Cca | Tca | 7 | 7 | Z.1 | 0.020231 |
ORF1ab/nsp3 | 1103 | P1103Q | cCa | cAa | 6 | 6 | AY.117 | 0.000507 |
ORF1ab/nsp3 | 1103 | P1103L | cCa | cTa | 6 | 6 | AY.121 | 0.000812 |
ORF1ab/nsp3 | 1103 | P1103L | cCa | cTa | 6 | 6 | AY.14 | 0.000528 |
ORF1ab/nsp3 | 1103 | P1103S | Cca | Tca | 6 | 6 | AY.30 | 0.002374 |
ORF1ab/nsp3 | 1103 | P1103Q | cCa | cAa | 6 | 6 | AY.39 | 0.000148 |
ORF1ab/nsp3 | 1103 | P1103P | ccA | ccT | 3 | 6 | AY.43 | 0.000013 |
ORF1ab/nsp3 | 1103 | P1103P | ccA | ccC | 3 | 6 | AY.43 | 0.000013 |
ORF1ab/nsp3 | 1103 | P1103Q | cCa | cAa | 6 | 6 | AY.45 | 0.00073 |
ORF1ab/nsp3 | 1103 | P1103L | cCa | cTa | 6 | 6 | AY.47 | 0.000187 |
ORF1ab/nsp3 | 1103 | P1103S | Cca | Tca | 6 | 6 | AY.70 | 0.001251 |
ORF1ab/nsp3 | 1103 | P1103Q | cCa | cAa | 6 | 6 | AY.77 | 0.006764 |
ORF1ab/nsp3 | 1103 | P1103S | Cca | Tca | 6 | 6 | AY.98.1 | 0.000291 |
ORF1ab/nsp3 | 1103 | P1103L | cCa | cTa | 6 | 6 | B.1.1.214 | 0.000333 |
ORF1ab/nsp3 | 1103 | P1103S | Cca | Tca | 6 | 6 | B.1.1.25 | 0.003411 |
ORF1ab/nsp3 | 1103 | P1103S | Cca | Tca | 6 | 6 | B.1.1.28 | 0.001867 |
ORF1ab/nsp3 | 1103 | P1103S | Cca | Tca | 6 | 6 | B.1.1.284 | 0.000644 |
ORF1ab/nsp3 | 1103 | P1103Q | cCa | cAa | 6 | 6 | B.1.1.368 | 0.018519 |
ORF1ab/nsp3 | 1103 | P1103A | Cca | Gca | 6 | 6 | B.1.1.7 | 0.000005 |
ORF1ab/nsp3 | 1103 | P1103P | ccA | ccG | 4 | 6 | B.1.177 | 0.000053 |
ORF1ab/nsp3 | 1103 | P1103P | ccA | ccT | 2 | 6 | B.1.177 | 0.000026 |
ORF1ab/nsp3 | 1103 | P1103S | Cca | Tca | 6 | 6 | B.1.177.21 | 0.000459 |
ORF1ab/nsp3 | 1103 | P1103L | cCa | cTa | 6 | 6 | B.1.416 | 0.007614 |
ORF1ab/nsp3 | 1103 | P1103L | cCa | cTa | 6 | 6 | B.1.453 | 0.019417 |
ORF1ab/nsp3 | 1103 | P1103S | Cca | Tca | 6 | 6 | B.1.596 | 0.000523 |
ORF1ab/nsp3 | 1103 | P1103S | Cca | Tca | 6 | 6 | B.1.599 | 0.021898 |
ORF1ab/nsp3 | 1103 | P1103S | Cca | Tca | 6 | 6 | B.1.609 | 0.002876 |
ORF1ab/nsp3 | 1103 | P1103S | Cca | Tca | 6 | 6 | B.1.637 | 0.000438 |
ORF1ab/nsp3 | 1103 | P1103L | cCa | cTa | 6 | 6 | Q.8 | 0.000989 |
ORF1ab/nsp3 | 1103 | P1103S | Cca | Tca | 6 | 6 | R.1 | 0.00054 |
ORF1ab/nsp3 | 1103 | P1103S | Cca | Tca | 5 | 5 | A | 0.001935 |
ORF1ab/nsp3 | 1103 | P1103L | cCa | cTa | 5 | 5 | A.27 | 0.008278 |
ORF1ab/nsp3 | 1103 | P1103L | cCa | cTa | 5 | 5 | A.28 | 0.013228 |
ORF1ab/nsp3 | 1103 | P1103K | CCa | AAa | 5 | 5 | All | 0.000001 |
ORF1ab/nsp3 | 1103 | P1103S | Cca | Tca | 5 | 5 | AY.110 | 0.000563 |
ORF1ab/nsp3 | 1103 | P1103S | Cca | Tca | 5 | 5 | AY.119 | 0.000177 |
ORF1ab/nsp3 | 1103 | P1103P | ccA | ccG | 5 | 5 | AY.25 | 0.00003 |
ORF1ab/nsp3 | 1103 | P1103S | Cca | Tca | 5 | 5 | AY.3.1 | 0.000426 |
ORF1ab/nsp3 | 1103 | P1103L | cCa | cTa | 5 | 5 | AY.39.1 | 0.000198 |
ORF1ab/nsp3 | 1103 | P1103S | Cca | Tca | 5 | 5 | AY.39.1 | 0.000198 |
ORF1ab/nsp3 | 1103 | P1103T | Cca | Aca | 5 | 5 | AY.4 | 0.000008 |
ORF1ab/nsp3 | 1103 | P1103Q | cCa | cAa | 5 | 5 | AY.55 | 0.004587 |
ORF1ab/nsp3 | 1103 | P1103S | Cca | Tca | 5 | 5 | AY.6 | 0.000206 |
ORF1ab/nsp3 | 1103 | P1103L | cCa | cTa | 5 | 5 | AY.61 | 0.000524 |
ORF1ab/nsp3 | 1103 | P1103L | cCa | cTa | 5 | 5 | AY.62 | 0.002179 |
ORF1ab/nsp3 | 1103 | P1103S | Cca | Tca | 5 | 5 | AY.7.2 | 0.002796 |
ORF1ab/nsp3 | 1103 | P1103S | Cca | Tca | 5 | 5 | AY.9 | 0.000338 |
ORF1ab/nsp3 | 1103 | P1103P | ccA | ccG | 3 | 5 | B.1 | 0.000027 |
ORF1ab/nsp3 | 1103 | P1103P | ccA | ccC | 1 | 5 | B.1 | 0.000009 |
ORF1ab/nsp3 | 1103 | P1103P | ccA | ccT | 1 | 5 | B.1 | 0.000009 |
ORF1ab/nsp3 | 1103 | P1103L | cCa | cTa | 5 | 5 | B.1.1.222 | 0.00102 |
ORF1ab/nsp3 | 1103 | P1103Q | cCa | cAa | 5 | 5 | B.1.2 | 0.000044 |
ORF1ab/nsp3 | 1103 | P1103S | Cca | Tca | 5 | 5 | B.1.241 | 0.004058 |
ORF1ab/nsp3 | 1103 | P1103S | Cca | Tca | 5 | 5 | B.1.258.17 | 0.00052 |
ORF1ab/nsp3 | 1103 | P1103L | cCa | cTa | 5 | 5 | B.1.349 | 0.003574 |
ORF1ab/nsp3 | 1103 | P1103L | cCa | cTa | 5 | 5 | B.1.398 | 0.014881 |
ORF1ab/nsp3 | 1103 | P1103S | Cca | Tca | 5 | 5 | B.1.427 | 0.000252 |
ORF1ab/nsp3 | 1103 | P1103Q | cCa | cAa | 5 | 5 | B.1.470 | 0.007022 |
ORF1ab/nsp3 | 1103 | P1103L | cCa | cTa | 5 | 5 | B.1.526 | 0.000118 |
ORF1ab/nsp3 | 1103 | P1103S | Cca | Tca | 5 | 5 | B.1.575 | 0.001517 |
ORF1ab/nsp3 | 1103 | P1103L | cCa | cTa | 5 | 5 | B.1.617.1 | 0.000645 |
ORF1ab/nsp3 | 1103 | P1103T | Cca | Aca | 5 | 5 | B.1.617.2 | 0.000019 |
ORF1ab/nsp3 | 1103 | P1103S | Cca | Tca | 5 | 5 | B.40 | 0.001821 |
ORF1ab/nsp3 | 1103 | P1103S | Cca | Tca | 5 | 5 | P.1.10 | 0.001347 |
ORF1ab/nsp3 | 1103 | P1103S | Cca | Tca | 5 | 5 | P.1.14 | 0.000239 |
ORF1ab/nsp3 | 1103 | P1103L | cCa | cTa | 5 | 5 | P.1.4 | 0.004883 |
ORF1ab/nsp3 | 1103 | P1103L | CCA | TTG | 2 | 4 | 0.111111 | |
ORF1ab/nsp3 | 1103 | P1103L | cCA | cTG | 2 | 4 | 0.111111 | |
ORF1ab/nsp3 | 1103 | P1103del2 | cCA | c-- | 4 | 4 | All | 0.000001 |
ORF1ab/nsp3 | 1103 | P1103Q | cCa | cAa | 4 | 4 | AY.100 | 0.000184 |
ORF1ab/nsp3 | 1103 | P1103S | Cca | Tca | 4 | 4 | AY.111 | 0.000733 |
ORF1ab/nsp3 | 1103 | P1103S | Cca | Tca | 4 | 4 | AY.116.1 | 0.001246 |
ORF1ab/nsp3 | 1103 | P1103S | Cca | Tca | 4 | 4 | AY.23 | 0.000279 |
ORF1ab/nsp3 | 1103 | P1103Q | cCa | cAa | 4 | 4 | AY.36 | 0.000593 |
ORF1ab/nsp3 | 1103 | P1103S | Cca | Tca | 4 | 4 | AY.36 | 0.000593 |
ORF1ab/nsp3 | 1103 | P1103L | cCa | cTa | 4 | 4 | AY.41 | 0.001176 |
ORF1ab/nsp3 | 1103 | P1103L | cCa | cTa | 4 | 4 | AY.46 | 0.000416 |
ORF1ab/nsp3 | 1103 | P1103L | cCa | cTa | 4 | 4 | AY.74 | 0.000463 |
ORF1ab/nsp3 | 1103 | P1103S | Cca | Tca | 4 | 4 | AY.75.1 | 0.000721 |
ORF1ab/nsp3 | 1103 | P1103Q | cCa | cAa | 4 | 4 | AY.87 | 0.003331 |
ORF1ab/nsp3 | 1103 | P1103Q | cCa | cAa | 4 | 4 | AY.88 | 0.003537 |
ORF1ab/nsp3 | 1103 | P1103S | Cca | Tca | 4 | 4 | AY.9.2 | 0.000147 |
ORF1ab/nsp3 | 1103 | P1103Q | cCa | cAa | 4 | 4 | AY.9.2 | 0.000147 |
ORF1ab/nsp3 | 1103 | P1103L | cCa | cTa | 4 | 4 | AY.98 | 0.000316 |
ORF1ab/nsp3 | 1103 | P1103del | CCA | --- | 4 | 4 | B.1.1 | 0.000073 |
ORF1ab/nsp3 | 1103 | P1103L | cCa | cTa | 4 | 4 | B.1.1.33 | 0.001684 |
ORF1ab/nsp3 | 1103 | P1103S | Cca | Tca | 4 | 4 | B.1.1.352 | 0.125 |
ORF1ab/nsp3 | 1103 | P1103L | cCa | cTa | 4 | 4 | B.1.177.44 | 0.002076 |
ORF1ab/nsp3 | 1103 | P1103L | cCa | cTa | 4 | 4 | B.1.177.7 | 0.000659 |
ORF1ab/nsp3 | 1103 | P1103L | cCa | cTa | 4 | 4 | B.1.311 | 0.001098 |
ORF1ab/nsp3 | 1103 | P1103S | Cca | Tca | 4 | 4 | B.1.36.38 | 0.006568 |
ORF1ab/nsp3 | 1103 | P1103T | Cca | Aca | 4 | 4 | B.1.369 | 0.001141 |
ORF1ab/nsp3 | 1103 | P1103del | CCA | --- | 4 | 4 | B.1.617.2 | 0.000015 |
ORF1ab/nsp3 | 1103 | P1103S | Cca | Tca | 4 | 4 | D.2 | 0.0003 |
ORF1ab/nsp3 | 1103 | P1103S | Cca | Tca | 4 | 4 | P.1.12 | 0.001936 |
ORF1ab/nsp3 | 1103 | P1103S | Cca | Tca | 4 | 4 | P.2 | 0.000747 |
ORF1ab/nsp3 | 1103 | P1103S | Cca | Tca | 3 | 3 | AY.10 | 0.00159 |
ORF1ab/nsp3 | 1103 | P1103Q | cCa | cAa | 3 | 3 | AY.102 | 0.00008 |
ORF1ab/nsp3 | 1103 | P1103L | cCa | cTa | 3 | 3 | AY.105 | 0.001929 |
ORF1ab/nsp3 | 1103 | P1103L | cCa | cTa | 3 | 3 | AY.106 | 0.001005 |
ORF1ab/nsp3 | 1103 | P1103S | Cca | Tca | 3 | 3 | AY.116 | 0.00086 |
ORF1ab/nsp3 | 1103 | P1103S | Cca | Tca | 3 | 3 | AY.118 | 0.000188 |
ORF1ab/nsp3 | 1103 | P1103T | Cca | Aca | 3 | 3 | AY.119 | 0.000106 |
ORF1ab/nsp3 | 1103 | P1103S | Cca | Tca | 3 | 3 | AY.120.1 | 0.000963 |
ORF1ab/nsp3 | 1103 | P1103Q | cCa | cAa | 3 | 3 | AY.22 | 0.006276 |
ORF1ab/nsp3 | 1103 | P1103del | CCA | --- | 3 | 3 | AY.25 | 0.000018 |
ORF1ab/nsp3 | 1103 | P1103P | ccA | ccT | 3 | 3 | AY.3 | 0.00003 |
ORF1ab/nsp3 | 1103 | P1103L | cCa | cTa | 3 | 3 | AY.3.1 | 0.000256 |
ORF1ab/nsp3 | 1103 | P1103L | cCa | cTa | 3 | 3 | AY.4.2 | 0.000065 |
ORF1ab/nsp3 | 1103 | P1103Q | cCa | cAa | 3 | 3 | AY.4.2 | 0.000065 |
ORF1ab/nsp3 | 1103 | P1103L | cCa | cTa | 3 | 3 | AY.46.4 | 0.000494 |
ORF1ab/nsp3 | 1103 | P1103S | Cca | Tca | 3 | 3 | AY.54 | 0.000286 |
ORF1ab/nsp3 | 1103 | P1103S | Cca | Tca | 3 | 3 | AY.59 | 0.001589 |
ORF1ab/nsp3 | 1103 | P1103Q | cCa | cAa | 3 | 3 | AY.6 | 0.000123 |
ORF1ab/nsp3 | 1103 | P1103S | Cca | Tca | 3 | 3 | AY.61 | 0.000314 |
ORF1ab/nsp3 | 1103 | P1103S | Cca | Tca | 3 | 3 | AY.68 | 0.000821 |
ORF1ab/nsp3 | 1103 | P1103L | cCa | cTa | 3 | 3 | AY.75.1 | 0.000541 |
ORF1ab/nsp3 | 1103 | P1103L | cCa | cTa | 3 | 3 | AY.9 | 0.000203 |
ORF1ab/nsp3 | 1103 | P1103L | cCa | cTa | 3 | 3 | AY.9.1 | 0.000251 |
ORF1ab/nsp3 | 1103 | P1103Q | cCa | cAa | 3 | 3 | AY.92 | 0.000862 |
ORF1ab/nsp3 | 1103 | P1103Q | cCa | cAa | 3 | 3 | AY.98 | 0.000237 |
ORF1ab/nsp3 | 1103 | P1103S | Cca | Tca | 3 | 3 | AY.99.2 | 0.000276 |
ORF1ab/nsp3 | 1103 | P1103S | Cca | Tca | 3 | 3 | AZ.5 | 0.010526 |
ORF1ab/nsp3 | 1103 | P1103del | CCA | --- | 3 | 3 | B.1 | 0.000027 |
ORF1ab/nsp3 | 1103 | P1103Q | cCa | cAa | 3 | 3 | B.1.1 | 0.000054 |
ORF1ab/nsp3 | 1103 | P1103S | Cca | Tca | 3 | 3 | B.1.1.186 | 0.010309 |
ORF1ab/nsp3 | 1103 | P1103S | Cca | Tca | 3 | 3 | B.1.1.192 | 0.006928 |
ORF1ab/nsp3 | 1103 | P1103S | Cca | Tca | 3 | 3 | B.1.1.207 | 0.003546 |
ORF1ab/nsp3 | 1103 | P1103Q | cCa | cAa | 3 | 3 | B.1.1.214 | 0.000166 |
ORF1ab/nsp3 | 1103 | P1103L | cCa | cTa | 3 | 3 | B.1.1.241 | 0.006211 |
ORF1ab/nsp3 | 1103 | P1103S | Cca | Tca | 3 | 3 | B.1.1.316 | 0.002775 |
ORF1ab/nsp3 | 1103 | P1103S | Cca | Tca | 3 | 3 | B.1.1.317 | 0.001235 |
ORF1ab/nsp3 | 1103 | P1103L | cCa | cTa | 3 | 3 | B.1.1.372 | 0.002066 |
ORF1ab/nsp3 | 1103 | P1103L | cCa | cTa | 3 | 3 | B.1.1.434 | 0.001046 |
ORF1ab/nsp3 | 1103 | P1103S | Cca | Tca | 3 | 3 | B.1.1.83 | 0.00813 |
ORF1ab/nsp3 | 1103 | P1103P | ccA | ccG | 3 | 3 | B.1.177.15 | 0.001893 |
ORF1ab/nsp3 | 1103 | P1103L | cCa | cTa | 3 | 3 | B.1.177.57 | 0.000843 |
ORF1ab/nsp3 | 1103 | P1103S | Cca | Tca | 3 | 3 | B.1.177.77 | 0.002179 |
ORF1ab/nsp3 | 1103 | P1103L | cCa | cTa | 3 | 3 | B.1.177.81 | 0.000568 |
ORF1ab/nsp3 | 1103 | P1103L | cCa | cTa | 3 | 3 | B.1.177.86 | 0.00055 |
ORF1ab/nsp3 | 1103 | P1103S | Cca | Tca | 3 | 3 | B.1.206 | 0.002447 |
ORF1ab/nsp3 | 1103 | P1103del | CCA | --- | 3 | 3 | B.1.258 | 0.0002 |
ORF1ab/nsp3 | 1103 | P1103R | cCa | cGa | 3 | 3 | B.1.36.29 | 0.001552 |
ORF1ab/nsp3 | 1103 | P1103S | Cca | Tca | 3 | 3 | B.1.416 | 0.003807 |
ORF1ab/nsp3 | 1103 | P1103R | cCa | cGa | 3 | 3 | B.1.429 | 0.000071 |
ORF1ab/nsp3 | 1103 | P1103Q | cCa | cAa | 3 | 3 | B.1.480 | 0.007463 |
ORF1ab/nsp3 | 1103 | P1103L | cCa | cTa | 3 | 3 | B.1.509 | 0.002597 |
ORF1ab/nsp3 | 1103 | P1103S | Cca | Tca | 3 | 3 | B.1.582 | 0.001472 |
ORF1ab/nsp3 | 1103 | P1103L | cCa | cTa | 3 | 3 | B.1.595 | 0.000783 |
ORF1ab/nsp3 | 1103 | P1103L | cCa | cTa | 3 | 3 | B.1.600 | 0.017544 |
ORF1ab/nsp3 | 1103 | P1103K | CCa | AAa | 3 | 3 | B.1.617.2 | 0.000011 |
ORF1ab/nsp3 | 1103 | P1103Q | cCa | cAa | 3 | 3 | B.3 | 0.002492 |
ORF1ab/nsp3 | 1103 | P1103L | cCa | cTa | 3 | 3 | C.16 | 0.003181 |
ORF1ab/nsp3 | 1103 | P1103L | cCa | cTa | 3 | 3 | R.1 | 0.00027 |
ORF1ab/nsp3 | 1103 | P1103P | ccA | ccC | 2 | 2 | 0.111111 | |
ORF1ab/nsp3 | 1103 | P1103A | Cca | Gca | 2 | 2 | AY.1 | 0.000791 |
ORF1ab/nsp3 | 1103 | P1103S | Cca | Tca | 2 | 2 | AY.1 | 0.000791 |
ORF1ab/nsp3 | 1103 | P1103L | cCa | cTa | 2 | 2 | AY.100 | 0.000092 |
ORF1ab/nsp3 | 1103 | P1103P | ccA | ccG | 2 | 2 | AY.102 | 0.000053 |
ORF1ab/nsp3 | 1103 | P1103Q | cCa | cAa | 2 | 2 | AY.106 | 0.00067 |
ORF1ab/nsp3 | 1103 | P1103L | cCa | cTa | 2 | 2 | AY.110 | 0.000225 |
ORF1ab/nsp3 | 1103 | P1103L | cCa | cTa | 2 | 2 | AY.111 | 0.000366 |
ORF1ab/nsp3 | 1103 | P1103Q | cCa | cAa | 2 | 2 | AY.120 | 0.000074 |
ORF1ab/nsp3 | 1103 | P1103S | Cca | Tca | 2 | 2 | AY.120 | 0.000074 |
ORF1ab/nsp3 | 1103 | P1103P | ccA | ccG | 2 | 2 | AY.120 | 0.000074 |
ORF1ab/nsp3 | 1103 | P1103L | cCa | cTa | 2 | 2 | AY.16.1 | 0.00094 |
ORF1ab/nsp3 | 1103 | P1103S | Cca | Tca | 2 | 2 | AY.23.1 | 0.000835 |
ORF1ab/nsp3 | 1103 | P1103T | Cca | Aca | 2 | 2 | AY.26 | 0.000057 |
ORF1ab/nsp3 | 1103 | P1103Q | cCa | cAa | 2 | 2 | AY.26 | 0.000057 |
ORF1ab/nsp3 | 1103 | P1103Q | cCa | cAa | 2 | 2 | AY.37 | 0.000632 |
ORF1ab/nsp3 | 1103 | P1103L | cCa | cTa | 2 | 2 | AY.38 | 0.000999 |
ORF1ab/nsp3 | 1103 | P1103S | Cca | Tca | 2 | 2 | AY.4.2.1 | 0.000298 |
ORF1ab/nsp3 | 1103 | P1103del | CCA | --- | 2 | 2 | AY.4.5 | 0.000215 |
ORF1ab/nsp3 | 1103 | P1103P | ccA | ccC | 2 | 2 | AY.4.5 | 0.000215 |
ORF1ab/nsp3 | 1103 | P1103Q | cCa | cAa | 2 | 2 | AY.40 | 0.001929 |
ORF1ab/nsp3 | 1103 | P1103del | CCA | --- | 2 | 2 | AY.43 | 0.000009 |
ORF1ab/nsp3 | 1103 | P1103T | Cca | Aca | 2 | 2 | AY.44 | 0.000012 |
ORF1ab/nsp3 | 1103 | P1103del | CCA | --- | 2 | 2 | AY.44 | 0.000012 |
ORF1ab/nsp3 | 1103 | P1103T | Cca | Aca | 2 | 2 | AY.45 | 0.000243 |
ORF1ab/nsp3 | 1103 | P1103Q | cCa | cAa | 2 | 2 | AY.46 | 0.000208 |
ORF1ab/nsp3 | 1103 | P1103S | Cca | Tca | 2 | 2 | AY.46.4 | 0.000329 |
ORF1ab/nsp3 | 1103 | P1103S | Cca | Tca | 2 | 2 | AY.46.5 | 0.000397 |
ORF1ab/nsp3 | 1103 | P1103S | Cca | Tca | 2 | 2 | AY.46.6 | 0.000144 |
ORF1ab/nsp3 | 1103 | P1103P | ccA | ccC | 2 | 2 | AY.47 | 0.000062 |
ORF1ab/nsp3 | 1103 | P1103S | Cca | Tca | 2 | 2 | AY.5.4 | 0.000553 |
ORF1ab/nsp3 | 1103 | P1103S | Cca | Tca | 2 | 2 | AY.52 | 0.001629 |
ORF1ab/nsp3 | 1103 | P1103del | CCA | --- | 2 | 2 | AY.53 | 0.000575 |
ORF1ab/nsp3 | 1103 | P1103L | cCa | cTa | 2 | 2 | AY.55 | 0.001835 |
ORF1ab/nsp3 | 1103 | P1103Q | cCa | cAa | 2 | 2 | AY.64 | 0.00119 |
ORF1ab/nsp3 | 1103 | P1103Q | cCa | cAa | 2 | 2 | AY.70 | 0.000417 |
ORF1ab/nsp3 | 1103 | P1103S | Cca | Tca | 2 | 2 | AY.9.1 | 0.000167 |
ORF1ab/nsp3 | 1103 | P1103del | CCA | --- | 2 | 2 | AY.9.2 | 0.000073 |
ORF1ab/nsp3 | 1103 | P1103L | cCa | cTa | 2 | 2 | AY.9.2 | 0.000073 |
ORF1ab/nsp3 | 1103 | P1103S | Cca | Tca | 2 | 2 | AY.98 | 0.000158 |
ORF1ab/nsp3 | 1103 | P1103Q | cCa | cAa | 2 | 2 | B | 0.000256 |
ORF1ab/nsp3 | 1103 | P1103T | Cca | Aca | 2 | 2 | B.1 | 0.000018 |
ORF1ab/nsp3 | 1103 | P1103R | cCa | cGa | 2 | 2 | B.1 | 0.000018 |
ORF1ab/nsp3 | 1103 | P1103P | ccA | ccT | 1 | 2 | B.1.1 | 0.000018 |
ORF1ab/nsp3 | 1103 | P1103P | ccA | ccG | 1 | 2 | B.1.1 | 0.000018 |
ORF1ab/nsp3 | 1103 | P1103S | Cca | Tca | 2 | 2 | B.1.1.10 | 0.00223 |
ORF1ab/nsp3 | 1103 | P1103S | Cca | Tca | 2 | 2 | B.1.1.117 | 0.019417 |
ORF1ab/nsp3 | 1103 | P1103L | cCa | cTa | 2 | 2 | B.1.1.176 | 0.000879 |
ORF1ab/nsp3 | 1103 | P1103S | Cca | Tca | 2 | 2 | B.1.1.220 | 0.003717 |
ORF1ab/nsp3 | 1103 | P1103L | cCa | cTa | 2 | 2 | B.1.1.243 | 0.008163 |
ORF1ab/nsp3 | 1103 | P1103Q | cCa | cAa | 2 | 2 | B.1.1.280 | 0.006173 |
ORF1ab/nsp3 | 1103 | P1103S | Cca | Tca | 2 | 2 | B.1.1.282 | 0.023256 |
ORF1ab/nsp3 | 1103 | P1103S | Cca | Tca | 2 | 2 | B.1.1.306 | 0.000877 |
ORF1ab/nsp3 | 1103 | P1103S | Cca | Tca | 2 | 2 | B.1.1.318 | 0.000604 |
ORF1ab/nsp3 | 1103 | P1103L | cCa | cTa | 2 | 2 | B.1.1.348 | 0.001592 |
ORF1ab/nsp3 | 1103 | P1103S | Cca | Tca | 2 | 2 | B.1.1.354 | 0.008772 |
ORF1ab/nsp3 | 1103 | P1103S | Cca | Tca | 2 | 2 | B.1.1.372 | 0.001377 |
ORF1ab/nsp3 | 1103 | P1103S | Cca | Tca | 2 | 2 | B.1.1.374 | 0.004751 |
ORF1ab/nsp3 | 1103 | P1103S | Cca | Tca | 2 | 2 | B.1.1.409 | 0.005666 |
ORF1ab/nsp3 | 1103 | P1103L | cCa | cTa | 2 | 2 | B.1.1.432 | 0.002532 |
ORF1ab/nsp3 | 1103 | P1103P | ccA | ccG | 2 | 2 | B.1.1.434 | 0.000697 |
ORF1ab/nsp3 | 1103 | P1103L | cCa | cTa | 2 | 2 | B.1.1.46 | 0.008734 |
ORF1ab/nsp3 | 1103 | P1103S | Cca | Tca | 2 | 2 | B.1.1.524 | 0.041667 |
ORF1ab/nsp3 | 1103 | P1103R | cCa | cGa | 2 | 2 | B.1.1.7 | 0.000002 |
ORF1ab/nsp3 | 1103 | P1103del1 | Cca | -ca | 1 | 2 | B.1.1.7 | 0.000001 |
ORF1ab/nsp3 | 1103 | P1103del1 | ccA | cc- | 1 | 2 | B.1.1.7 | 0.000001 |
ORF1ab/nsp3 | 1103 | P1103L | cCa | cTa | 2 | 2 | B.1.1.70 | 0.000682 |
ORF1ab/nsp3 | 1103 | P1103L | cCa | cTa | 2 | 2 | B.1.110.3 | 0.001437 |
ORF1ab/nsp3 | 1103 | P1103T | Cca | Aca | 2 | 2 | B.1.160 | 0.000062 |
ORF1ab/nsp3 | 1103 | P1103Q | cCa | cAa | 2 | 2 | B.1.160.16 | 0.001859 |
ORF1ab/nsp3 | 1103 | P1103L | cCa | cTa | 2 | 2 | B.1.161 | 0.034483 |
ORF1ab/nsp3 | 1103 | P1103del | CCA | --- | 2 | 2 | B.1.177 | 0.000026 |
ORF1ab/nsp3 | 1103 | P1103L | cCa | cTa | 2 | 2 | B.1.177.11 | 0.003396 |
ORF1ab/nsp3 | 1103 | P1103S | Cca | Tca | 2 | 2 | B.1.177.15 | 0.001262 |
ORF1ab/nsp3 | 1103 | P1103L | cCa | cTa | 2 | 2 | B.1.177.15 | 0.001262 |
ORF1ab/nsp3 | 1103 | P1103S | Cca | Tca | 2 | 2 | B.1.177.33 | 0.003289 |
ORF1ab/nsp3 | 1103 | P1103L | cCa | cTa | 2 | 2 | B.1.177.33 | 0.003289 |
ORF1ab/nsp3 | 1103 | P1103S | Cca | Tca | 2 | 2 | B.1.177.38 | 0.020833 |
ORF1ab/nsp3 | 1103 | P1103S | Cca | Tca | 2 | 2 | B.1.177.44 | 0.001038 |
ORF1ab/nsp3 | 1103 | P1103del1 | ccA | cc- | 2 | 2 | B.1.2 | 0.000018 |
ORF1ab/nsp3 | 1103 | P1103A | Cca | Gca | 2 | 2 | B.1.2 | 0.000018 |
ORF1ab/nsp3 | 1103 | P1103P | ccA | ccG | 2 | 2 | B.1.221 | 0.000142 |
ORF1ab/nsp3 | 1103 | P1103L | cCa | cTa | 2 | 2 | B.1.280 | 0.014286 |
ORF1ab/nsp3 | 1103 | P1103S | Cca | Tca | 2 | 2 | B.1.311 | 0.000549 |
ORF1ab/nsp3 | 1103 | P1103Q | cCa | cAa | 2 | 2 | B.1.320 | 0.002491 |
ORF1ab/nsp3 | 1103 | P1103R | cCa | cGa | 2 | 2 | B.1.351 | 0.000059 |
ORF1ab/nsp3 | 1103 | P1103L | cCa | cTa | 2 | 2 | B.1.36.18 | 0.00084 |
ORF1ab/nsp3 | 1103 | P1103S | Cca | Tca | 2 | 2 | B.1.36.31 | 0.003503 |
ORF1ab/nsp3 | 1103 | P1103L | cCa | cTa | 2 | 2 | B.1.367 | 0.001585 |
ORF1ab/nsp3 | 1103 | P1103L | cCa | cTa | 2 | 2 | B.1.425 | 0.005988 |
ORF1ab/nsp3 | 1103 | P1103L | cCa | cTa | 2 | 2 | B.1.428 | 0.002041 |
ORF1ab/nsp3 | 1103 | P1103S | Cca | Tca | 2 | 2 | B.1.438.1 | 0.000215 |
ORF1ab/nsp3 | 1103 | P1103S | Cca | Tca | 2 | 2 | B.1.499 | 0.002101 |
ORF1ab/nsp3 | 1103 | P1103Q | cCa | cAa | 2 | 2 | B.1.517 | 0.000854 |
ORF1ab/nsp3 | 1103 | P1103Q | cCa | cAa | 2 | 2 | B.1.525 | 0.000226 |
ORF1ab/nsp3 | 1103 | P1103L | cCa | cTa | 2 | 2 | B.1.547 | 0.04878 |
ORF1ab/nsp3 | 1103 | P1103S | Cca | Tca | 2 | 2 | B.1.568 | 0.002222 |
ORF1ab/nsp3 | 1103 | P1103L | cCa | cTa | 2 | 2 | B.1.582 | 0.000981 |
ORF1ab/nsp3 | 1103 | P1103S | Cca | Tca | 2 | 2 | B.1.602 | 0.013072 |
ORF1ab/nsp3 | 1103 | P1103L | cCa | cTa | 2 | 2 | B.1.612 | 0.005305 |
ORF1ab/nsp3 | 1103 | P1103S | Cca | Tca | 2 | 2 | B.1.621.1 | 0.001012 |
ORF1ab/nsp3 | 1103 | P1103L | cCa | cTa | 2 | 2 | C.36 | 0.001821 |
ORF1ab/nsp3 | 1103 | P1103del | CCA | --- | 2 | 2 | C.37 | 0.000232 |
ORF1ab/nsp3 | 1103 | P1103P | ccA | ccG | 2 | 2 | D.2 | 0.00015 |
ORF1ab/nsp3 | 1103 | P1103del | CCA | --- | 2 | 2 | P.1 | 0.000032 |
ORF1ab/nsp3 | 1103 | P1103P | ccA | ccT | 2 | 2 | P.1 | 0.000032 |
ORF1ab/nsp3 | 1103 | P1103S | Cca | Tca | 2 | 2 | P.1.15 | 0.000465 |
ORF1ab/nsp3 | 1103 | P1103L | cCa | cTa | 2 | 2 | P.1.17 | 0.000324 |
ORF1ab/nsp3 | 1103 | P1103S | Cca | Tca | 2 | 2 | P.1.2 | 0.002312 |
ORF1ab/nsp3 | 1103 | P1103L | cCa | cTa | 2 | 2 | P.1.7 | 0.000639 |
ORF1ab/nsp3 | 1103 | P1103S | Cca | Tca | 2 | 2 | Q.3 | 0.00029 |
ORF1ab/nsp3 | 1103 | P1103L | cCa | cTa | 2 | 2 | Q.3 | 0.00029 |
ORF1ab/nsp3 | 1103 | P1103L | cCa | cTa | 1 | 1 | A | 0.000387 |
ORF1ab/nsp3 | 1103 | P1103P | ccA | ccT | 1 | 1 | A | 0.000387 |
ORF1ab/nsp3 | 1103 | P1103S | Cca | Tca | 1 | 1 | A.2.4 | 0.003367 |
ORF1ab/nsp3 | 1103 | P1103L | cCa | cTa | 1 | 1 | A.2.5 | 0.000499 |
ORF1ab/nsp3 | 1103 | P1103S | Cca | Tca | 1 | 1 | A.21 | 0.00277 |
ORF1ab/nsp3 | 1103 | P1103S | Cca | Tca | 1 | 1 | A.22 | 0.066667 |
ORF1ab/nsp3 | 1103 | P1103S | Cca | Tca | 1 | 1 | A.25 | 0.018182 |
ORF1ab/nsp3 | 1103 | P1103S | Cca | Tca | 1 | 1 | A.27 | 0.001656 |
ORF1ab/nsp3 | 1103 | P1103L | cCa | cTa | 1 | 1 | A.29 | 0.005319 |
ORF1ab/nsp3 | 1103 | P1103I | CCa | ATa | 1 | 1 | All | 0 |
ORF1ab/nsp3 | 1103 | P1103L | cCa | cTa | 1 | 1 | AY.1 | 0.000396 |
ORF1ab/nsp3 | 1103 | P1103Q | cCa | cAa | 1 | 1 | AY.10 | 0.00053 |
ORF1ab/nsp3 | 1103 | P1103A | Cca | Gca | 1 | 1 | AY.102 | 0.000027 |
ORF1ab/nsp3 | 1103 | P1103R | cCa | cGa | 1 | 1 | AY.103 | 0.000006 |
ORF1ab/nsp3 | 1103 | P1103L | cCa | cTa | 1 | 1 | AY.109 | 0.00074 |
ORF1ab/nsp3 | 1103 | P1103S | Cca | Tca | 1 | 1 | AY.109 | 0.00074 |
ORF1ab/nsp3 | 1103 | P1103R | cCa | cGa | 1 | 1 | AY.113 | 0.000142 |
ORF1ab/nsp3 | 1103 | P1103P | ccA | ccG | 1 | 1 | AY.113 | 0.000142 |
ORF1ab/nsp3 | 1103 | P1103L | cCa | cTa | 1 | 1 | AY.114 | 0.000231 |
ORF1ab/nsp3 | 1103 | P1103L | cCa | cTa | 1 | 1 | AY.116 | 0.000287 |
ORF1ab/nsp3 | 1103 | P1103P | ccA | ccC | 1 | 1 | AY.117 | 0.000085 |
ORF1ab/nsp3 | 1103 | P1103P | ccA | ccT | 1 | 1 | AY.118 | 0.000063 |
ORF1ab/nsp3 | 1103 | P1103Q | cCa | cAa | 1 | 1 | AY.119 | 0.000035 |
ORF1ab/nsp3 | 1103 | P1103L | cCa | cTa | 1 | 1 | AY.12 | 0.000316 |
ORF1ab/nsp3 | 1103 | P1103Q | cCa | cAa | 1 | 1 | AY.12 | 0.000316 |
ORF1ab/nsp3 | 1103 | P1103S | Cca | Tca | 1 | 1 | AY.121 | 0.000135 |
ORF1ab/nsp3 | 1103 | P1103L | cCa | cTa | 1 | 1 | AY.13 | 0.000161 |
ORF1ab/nsp3 | 1103 | P1103P | ccA | ccG | 1 | 1 | AY.14 | 0.000088 |
ORF1ab/nsp3 | 1103 | P1103Q | cCa | cAa | 1 | 1 | AY.20 | 0.000039 |
ORF1ab/nsp3 | 1103 | P1103R | cCa | cGa | 1 | 1 | AY.24 | 0.000431 |
ORF1ab/nsp3 | 1103 | P1103K | CCa | AAa | 1 | 1 | AY.25 | 0.000006 |
ORF1ab/nsp3 | 1103 | P1103P | ccA | ccG | 1 | 1 | AY.26 | 0.000028 |
ORF1ab/nsp3 | 1103 | P1103del1 | Cca | -ca | 1 | 1 | AY.26 | 0.000028 |
ORF1ab/nsp3 | 1103 | P1103Q | cCa | cAa | 1 | 1 | AY.27 | 0.000065 |
ORF1ab/nsp3 | 1103 | P1103Q | cCa | cAa | 1 | 1 | AY.28 | 0.00189 |
ORF1ab/nsp3 | 1103 | P1103P | ccA | ccC | 1 | 1 | AY.29 | 0.000016 |
ORF1ab/nsp3 | 1103 | P1103R | cCa | cGa | 1 | 1 | AY.29.1 | 0.000221 |
ORF1ab/nsp3 | 1103 | P1103L | cCa | cTa | 1 | 1 | AY.29.1 | 0.000221 |
ORF1ab/nsp3 | 1103 | P1103Q | cCa | cAa | 1 | 1 | AY.29.1 | 0.000221 |
ORF1ab/nsp3 | 1103 | P1103L | cCa | cTa | 1 | 1 | AY.32 | 0.000532 |
ORF1ab/nsp3 | 1103 | P1103A | Cca | Gca | 1 | 1 | AY.33 | 0.000067 |
ORF1ab/nsp3 | 1103 | P1103S | Cca | Tca | 1 | 1 | AY.37 | 0.000316 |
ORF1ab/nsp3 | 1103 | P1103P | ccA | ccC | 1 | 1 | AY.39 | 0.000025 |
ORF1ab/nsp3 | 1103 | P1103A | Cca | Gca | 1 | 1 | AY.39 | 0.000025 |
ORF1ab/nsp3 | 1103 | P1103A | Cca | Gca | 1 | 1 | AY.39.1 | 0.00004 |
ORF1ab/nsp3 | 1103 | P1103del | CCA | --- | 1 | 1 | AY.4.2 | 0.000022 |
ORF1ab/nsp3 | 1103 | P1103R | cCa | cGa | 1 | 1 | AY.4.3 | 0.000842 |
ORF1ab/nsp3 | 1103 | P1103Q | cCa | cAa | 1 | 1 | AY.4.3 | 0.000842 |
ORF1ab/nsp3 | 1103 | P1103S | Cca | Tca | 1 | 1 | AY.4.4 | 0.000409 |
ORF1ab/nsp3 | 1103 | P1103L | cCa | cTa | 1 | 1 | AY.4.5 | 0.000107 |
ORF1ab/nsp3 | 1103 | P1103Q | cCa | cAa | 1 | 1 | AY.41 | 0.000294 |
ORF1ab/nsp3 | 1103 | P1103del2 | cCA | c-- | 1 | 1 | AY.43 | 0.000004 |
ORF1ab/nsp3 | 1103 | P1103del1 | cCA | cT- | 1 | 1 | AY.43 | 0.000004 |
ORF1ab/nsp3 | 1103 | P1103del1 | Cca | -ca | 1 | 1 | AY.44 | 0.000006 |
ORF1ab/nsp3 | 1103 | P1103R | cCa | cGa | 1 | 1 | AY.44 | 0.000006 |
ORF1ab/nsp3 | 1103 | P1103P | ccA | ccC | 1 | 1 | AY.46 | 0.000104 |
ORF1ab/nsp3 | 1103 | P1103T | Cca | Aca | 1 | 1 | AY.46 | 0.000104 |
ORF1ab/nsp3 | 1103 | P1103L | cCa | cTa | 1 | 1 | AY.46.1 | 0.001027 |
ORF1ab/nsp3 | 1103 | P1103L | cCa | cTa | 1 | 1 | AY.46.2 | 0.000635 |
ORF1ab/nsp3 | 1103 | P1103L | cCa | cTa | 1 | 1 | AY.46.5 | 0.000198 |
ORF1ab/nsp3 | 1103 | P1103Q | cCa | cAa | 1 | 1 | AY.46.6 | 0.000072 |
ORF1ab/nsp3 | 1103 | P1103del | CCA | --- | 1 | 1 | AY.46.6 | 0.000072 |
ORF1ab/nsp3 | 1103 | P1103T | Cca | Aca | 1 | 1 | AY.47 | 0.000031 |
ORF1ab/nsp3 | 1103 | P1103L | cCa | cTa | 1 | 1 | AY.49 | 0.003195 |
ORF1ab/nsp3 | 1103 | P1103Q | cCa | cAa | 1 | 1 | AY.49 | 0.003195 |
ORF1ab/nsp3 | 1103 | P1103L | cCa | cTa | 1 | 1 | AY.5.3 | 0.000337 |
ORF1ab/nsp3 | 1103 | P1103L | cCa | cTa | 1 | 1 | AY.51 | 0.000909 |
ORF1ab/nsp3 | 1103 | P1103del | CCA | --- | 1 | 1 | AY.52 | 0.000814 |
ORF1ab/nsp3 | 1103 | P1103del | CCA | --- | 1 | 1 | AY.54 | 0.000095 |
ORF1ab/nsp3 | 1103 | P1103P | ccA | ccC | 1 | 1 | AY.57 | 0.000656 |
ORF1ab/nsp3 | 1103 | P1103S | Cca | Tca | 1 | 1 | AY.58 | 0.000907 |
ORF1ab/nsp3 | 1103 | P1103L | cCa | cTa | 1 | 1 | AY.58 | 0.000907 |
ORF1ab/nsp3 | 1103 | P1103Q | cCa | cAa | 1 | 1 | AY.58 | 0.000907 |
ORF1ab/nsp3 | 1103 | P1103P | ccA | ccG | 1 | 1 | AY.6 | 0.000041 |
ORF1ab/nsp3 | 1103 | P1103P | ccA | ccG | 1 | 1 | AY.60 | 0.000938 |
ORF1ab/nsp3 | 1103 | P1103del | CCA | --- | 1 | 1 | AY.61 | 0.000105 |
ORF1ab/nsp3 | 1103 | P1103P | ccA | ccG | 1 | 1 | AY.65 | 0.000533 |
ORF1ab/nsp3 | 1103 | P1103Q | cCa | cAa | 1 | 1 | AY.65 | 0.000533 |
ORF1ab/nsp3 | 1103 | P1103R | cCa | cGa | 1 | 1 | AY.65 | 0.000533 |
ORF1ab/nsp3 | 1103 | P1103del | CCA | --- | 1 | 1 | AY.65 | 0.000533 |
ORF1ab/nsp3 | 1103 | P1103S | Cca | Tca | 1 | 1 | AY.66 | 0.00107 |
ORF1ab/nsp3 | 1103 | P1103del | CCA | --- | 1 | 1 | AY.66 | 0.00107 |
ORF1ab/nsp3 | 1103 | P1103Q | cCa | cAa | 1 | 1 | AY.67 | 0.000464 |
ORF1ab/nsp3 | 1103 | P1103A | Cca | Gca | 1 | 1 | AY.67 | 0.000464 |
ORF1ab/nsp3 | 1103 | P1103L | cCa | cTa | 1 | 1 | AY.67 | 0.000464 |
ORF1ab/nsp3 | 1103 | P1103S | Cca | Tca | 1 | 1 | AY.67 | 0.000464 |
ORF1ab/nsp3 | 1103 | P1103S | Cca | Tca | 1 | 1 | AY.7 | 0.000196 |
ORF1ab/nsp3 | 1103 | P1103L | cCa | cTa | 1 | 1 | AY.70 | 0.000209 |
ORF1ab/nsp3 | 1103 | P1103del | CCA | --- | 1 | 1 | AY.71 | 0.000475 |
ORF1ab/nsp3 | 1103 | P1103Q | cCa | cAa | 1 | 1 | AY.71 | 0.000475 |
ORF1ab/nsp3 | 1103 | P1103S | Cca | Tca | 1 | 1 | AY.71 | 0.000475 |
ORF1ab/nsp3 | 1103 | P1103S | Cca | Tca | 1 | 1 | AY.74 | 0.000116 |
ORF1ab/nsp3 | 1103 | P1103Q | cCa | cAa | 1 | 1 | AY.75.1 | 0.00018 |
ORF1ab/nsp3 | 1103 | P1103L | cCa | cTa | 1 | 1 | AY.77 | 0.001127 |
ORF1ab/nsp3 | 1103 | P1103L | cCa | cTa | 1 | 1 | AY.79 | 0.001211 |
ORF1ab/nsp3 | 1103 | P1103P | ccA | ccC | 1 | 1 | AY.8 | 0.000606 |
ORF1ab/nsp3 | 1103 | P1103Q | cCa | cAa | 1 | 1 | AY.82 | 0.001357 |
ORF1ab/nsp3 | 1103 | P1103R | cCA | cGT | 1 | 1 | AY.84 | 0.000437 |
ORF1ab/nsp3 | 1103 | P1103S | Cca | Tca | 1 | 1 | AY.84 | 0.000437 |
ORF1ab/nsp3 | 1103 | P1103del | CCA | --- | 1 | 1 | AY.85 | 0.000427 |
ORF1ab/nsp3 | 1103 | P1103Q | cCa | cAa | 1 | 1 | AY.91 | 0.00073 |
ORF1ab/nsp3 | 1103 | P1103L | cCa | cTa | 1 | 1 | AY.93 | 0.000273 |
ORF1ab/nsp3 | 1103 | P1103Q | cCa | cAa | 1 | 1 | AY.96 | 0.002075 |
ORF1ab/nsp3 | 1103 | P1103T | Cca | Aca | 1 | 1 | AY.98.1 | 0.000048 |
ORF1ab/nsp3 | 1103 | P1103del | CCA | --- | 1 | 1 | AY.99 | 0.001049 |
ORF1ab/nsp3 | 1103 | P1103L | cCa | cTa | 1 | 1 | AY.99.2 | 0.000092 |
ORF1ab/nsp3 | 1103 | P1103L | cCa | cTa | 1 | 1 | AZ.2 | 0.000821 |
ORF1ab/nsp3 | 1103 | P1103del1 | Cca | -ca | 1 | 1 | B | 0.000128 |
ORF1ab/nsp3 | 1103 | P1103K | CCa | AAa | 1 | 1 | B.1 | 0.000009 |
ORF1ab/nsp3 | 1103 | P1103del1 | Cca | -ca | 1 | 1 | B.1 | 0.000009 |
ORF1ab/nsp3 | 1103 | P1103T | Cca | Aca | 1 | 1 | B.1.1 | 0.000018 |
ORF1ab/nsp3 | 1103 | P1103I | CCa | ATa | 1 | 1 | B.1.1 | 0.000018 |
ORF1ab/nsp3 | 1103 | P1103S | Cca | Tca | 1 | 1 | B.1.1.1 | 0.000327 |
ORF1ab/nsp3 | 1103 | P1103Q | cCa | cAa | 1 | 1 | B.1.1.10 | 0.001115 |
ORF1ab/nsp3 | 1103 | P1103L | cCa | cTa | 1 | 1 | B.1.1.101 | 0.01 |
ORF1ab/nsp3 | 1103 | P1103L | cCa | cTa | 1 | 1 | B.1.1.134 | 0.011364 |
ORF1ab/nsp3 | 1103 | P1103S | Cca | Tca | 1 | 1 | B.1.1.135 | 0.004695 |
ORF1ab/nsp3 | 1103 | P1103S | Cca | Tca | 1 | 1 | B.1.1.148 | 0.008772 |
ORF1ab/nsp3 | 1103 | P1103S | Cca | Tca | 1 | 1 | B.1.1.153 | 0.001095 |
ORF1ab/nsp3 | 1103 | P1103S | Cca | Tca | 1 | 1 | B.1.1.157 | 0.000913 |
ORF1ab/nsp3 | 1103 | P1103L | cCa | cTa | 1 | 1 | B.1.1.170 | 0.001247 |
ORF1ab/nsp3 | 1103 | P1103L | cCa | cTa | 1 | 1 | B.1.1.189 | 0.001513 |
ORF1ab/nsp3 | 1103 | P1103L | cCa | cTa | 1 | 1 | B.1.1.192 | 0.002309 |
ORF1ab/nsp3 | 1103 | P1103del | CCA | --- | 1 | 1 | B.1.1.207 | 0.001182 |
ORF1ab/nsp3 | 1103 | P1103S | Cca | Tca | 1 | 1 | B.1.1.210 | 0.005714 |
ORF1ab/nsp3 | 1103 | P1103S | Cca | Tca | 1 | 1 | B.1.1.214 | 0.000055 |
ORF1ab/nsp3 | 1103 | P1103R | CCa | AGa | 1 | 1 | B.1.1.216 | 0.00089 |
ORF1ab/nsp3 | 1103 | P1103S | Cca | Tca | 1 | 1 | B.1.1.216 | 0.00089 |
ORF1ab/nsp3 | 1103 | P1103T | Cca | Aca | 1 | 1 | B.1.1.243 | 0.004082 |
ORF1ab/nsp3 | 1103 | P1103L | cCa | cTa | 1 | 1 | B.1.1.244 | 0.015385 |
ORF1ab/nsp3 | 1103 | P1103L | cCa | cTa | 1 | 1 | B.1.1.25 | 0.000569 |
ORF1ab/nsp3 | 1103 | P1103L | cCa | cTa | 1 | 1 | B.1.1.263 | 0.001558 |
ORF1ab/nsp3 | 1103 | P1103L | cCa | cTa | 1 | 1 | B.1.1.269 | 0.001353 |
ORF1ab/nsp3 | 1103 | P1103S | Cca | Tca | 1 | 1 | B.1.1.274 | 0.005051 |
ORF1ab/nsp3 | 1103 | P1103L | cCa | cTa | 1 | 1 | B.1.1.274 | 0.005051 |
ORF1ab/nsp3 | 1103 | P1103S | Cca | Tca | 1 | 1 | B.1.1.277 | 0.000759 |
ORF1ab/nsp3 | 1103 | P1103T | Cca | Aca | 1 | 1 | B.1.1.284 | 0.000107 |
ORF1ab/nsp3 | 1103 | P1103L | cCa | cTa | 1 | 1 | B.1.1.291 | 0.000742 |
ORF1ab/nsp3 | 1103 | P1103Q | cCa | cAa | 1 | 1 | B.1.1.294 | 0.001266 |
ORF1ab/nsp3 | 1103 | P1103P | ccA | ccT | 1 | 1 | B.1.1.294 | 0.001266 |
ORF1ab/nsp3 | 1103 | P1103L | cCa | cTa | 1 | 1 | B.1.1.298 | 0.000862 |
ORF1ab/nsp3 | 1103 | P1103del | CCA | --- | 1 | 1 | B.1.1.311 | 0.000358 |
ORF1ab/nsp3 | 1103 | P1103S | Cca | Tca | 1 | 1 | B.1.1.33 | 0.000421 |
ORF1ab/nsp3 | 1103 | P1103del | CCA | --- | 1 | 1 | B.1.1.348 | 0.000796 |
ORF1ab/nsp3 | 1103 | P1103S | Cca | Tca | 1 | 1 | B.1.1.37 | 0.000193 |
ORF1ab/nsp3 | 1103 | P1103P | ccA | ccT | 1 | 1 | B.1.1.371 | 0.010417 |
ORF1ab/nsp3 | 1103 | P1103L | cCa | cTa | 1 | 1 | B.1.1.374 | 0.002375 |
ORF1ab/nsp3 | 1103 | P1103A | Cca | Gca | 1 | 1 | B.1.1.39 | 0.00051 |
ORF1ab/nsp3 | 1103 | P1103L | cCa | cTa | 1 | 1 | B.1.1.39 | 0.00051 |
ORF1ab/nsp3 | 1103 | P1103S | Cca | Tca | 1 | 1 | B.1.1.398 | 0.003226 |
ORF1ab/nsp3 | 1103 | P1103L | cCa | cTa | 1 | 1 | B.1.1.398 | 0.003226 |
ORF1ab/nsp3 | 1103 | P1103S | Cca | Tca | 1 | 1 | B.1.1.402 | 0.011111 |
ORF1ab/nsp3 | 1103 | P1103del | CCA | --- | 1 | 1 | B.1.1.409 | 0.002833 |
ORF1ab/nsp3 | 1103 | P1103S | Cca | Tca | 1 | 1 | B.1.1.411 | 0.014706 |
ORF1ab/nsp3 | 1103 | P1103L | cCa | cTa | 1 | 1 | B.1.1.416 | 0.000905 |
ORF1ab/nsp3 | 1103 | P1103S | Cca | Tca | 1 | 1 | B.1.1.416 | 0.000905 |
ORF1ab/nsp3 | 1103 | P1103S | Cca | Tca | 1 | 1 | B.1.1.448 | 0.002033 |
ORF1ab/nsp3 | 1103 | P1103L | cCa | cTa | 1 | 1 | B.1.1.448 | 0.002033 |
ORF1ab/nsp3 | 1103 | P1103S | Cca | Tca | 1 | 1 | B.1.1.485 | 0.016667 |
ORF1ab/nsp3 | 1103 | P1103S | Cca | Tca | 1 | 1 | B.1.1.518 | 0.006329 |
ORF1ab/nsp3 | 1103 | P1103Q | cCa | cAa | 1 | 1 | B.1.1.519 | 0.00004 |
ORF1ab/nsp3 | 1103 | P1103S | Cca | Tca | 1 | 1 | B.1.1.52 | 0.012195 |
ORF1ab/nsp3 | 1103 | P1103S | Cca | Tca | 1 | 1 | B.1.1.521 | 0.005348 |
ORF1ab/nsp3 | 1103 | P1103S | Cca | Tca | 1 | 1 | B.1.1.523 | 0.001563 |
ORF1ab/nsp3 | 1103 | P1103S | Cca | Tca | 1 | 1 | B.1.1.528 | 0.004808 |
ORF1ab/nsp3 | 1103 | P1103S | Cca | Tca | 1 | 1 | B.1.1.61 | 0.008772 |
ORF1ab/nsp3 | 1103 | P1103L | cCa | cTa | 1 | 1 | B.1.1.63 | 0.000386 |
ORF1ab/nsp3 | 1103 | P1103del2 | cCA | c-- | 1 | 1 | B.1.1.7 | 0.000001 |
ORF1ab/nsp3 | 1103 | P1103Q | cCa | cAa | 1 | 1 | B.1.1.72 | 0.030303 |
ORF1ab/nsp3 | 1103 | P1103P | ccA | ccG | 1 | 1 | B.1.115 | 0.021739 |
ORF1ab/nsp3 | 1103 | P1103S | Cca | Tca | 1 | 1 | B.1.13 | 0.002375 |
ORF1ab/nsp3 | 1103 | P1103S | Cca | Tca | 1 | 1 | B.1.149 | 0.003425 |
ORF1ab/nsp3 | 1103 | P1103L | cCa | cTa | 1 | 1 | B.1.162 | 0.005025 |
ORF1ab/nsp3 | 1103 | P1103S | Cca | Tca | 1 | 1 | B.1.177.10 | 0.000878 |
ORF1ab/nsp3 | 1103 | P1103L | cCa | cTa | 1 | 1 | B.1.177.10 | 0.000878 |
ORF1ab/nsp3 | 1103 | P1103S | Cca | Tca | 1 | 1 | B.1.177.11 | 0.001698 |
ORF1ab/nsp3 | 1103 | P1103L | cCa | cTa | 1 | 1 | B.1.177.12 | 0.000152 |
ORF1ab/nsp3 | 1103 | P1103S | Cca | Tca | 1 | 1 | B.1.177.16 | 0.000664 |
ORF1ab/nsp3 | 1103 | P1103del1 | Cca | -ca | 1 | 1 | B.1.177.18 | 0.00116 |
ORF1ab/nsp3 | 1103 | P1103S | Cca | Tca | 1 | 1 | B.1.177.20 | 0.001517 |
ORF1ab/nsp3 | 1103 | P1103del | CCA | --- | 1 | 1 | B.1.177.32 | 0.00135 |
ORF1ab/nsp3 | 1103 | P1103L | cCa | cTa | 1 | 1 | B.1.177.46 | 0.000918 |
ORF1ab/nsp3 | 1103 | P1103del | CCA | --- | 1 | 1 | B.1.177.51 | 0.004566 |
ORF1ab/nsp3 | 1103 | P1103S | Cca | Tca | 1 | 1 | B.1.177.54 | 0.000606 |
ORF1ab/nsp3 | 1103 | P1103Q | cCa | cAa | 1 | 1 | B.1.177.56 | 0.000668 |
ORF1ab/nsp3 | 1103 | P1103S | Cca | Tca | 1 | 1 | B.1.177.57 | 0.000281 |
ORF1ab/nsp3 | 1103 | P1103L | cCa | cTa | 1 | 1 | B.1.177.58 | 0.001332 |
ORF1ab/nsp3 | 1103 | P1103P | ccA | ccT | 1 | 1 | B.1.177.6 | 0.000977 |
ORF1ab/nsp3 | 1103 | P1103L | cCa | cTa | 1 | 1 | B.1.177.65 | 0.000665 |
ORF1ab/nsp3 | 1103 | P1103L | cCa | cTa | 1 | 1 | B.1.177.73 | 0.000566 |
ORF1ab/nsp3 | 1103 | P1103S | Cca | Tca | 1 | 1 | B.1.177.75 | 0.001041 |
ORF1ab/nsp3 | 1103 | P1103L | cCa | cTa | 1 | 1 | B.1.177.75 | 0.001041 |
ORF1ab/nsp3 | 1103 | P1103L | cCa | cTa | 1 | 1 | B.1.177.79 | 0.002342 |
ORF1ab/nsp3 | 1103 | P1103S | Cca | Tca | 1 | 1 | B.1.177.79 | 0.002342 |
ORF1ab/nsp3 | 1103 | P1103L | cCa | cTa | 1 | 1 | B.1.189 | 0.004292 |
ORF1ab/nsp3 | 1103 | P1103S | Cca | Tca | 1 | 1 | B.1.195 | 0.005025 |
ORF1ab/nsp3 | 1103 | P1103del | CCA | --- | 1 | 1 | B.1.2 | 0.000009 |
ORF1ab/nsp3 | 1103 | P1103R | cCa | cGa | 1 | 1 | B.1.2 | 0.000009 |
ORF1ab/nsp3 | 1103 | P1103T | Cca | Aca | 1 | 1 | B.1.2 | 0.000009 |
ORF1ab/nsp3 | 1103 | P1103L | cCa | cTa | 1 | 1 | B.1.206 | 0.000816 |
ORF1ab/nsp3 | 1103 | P1103L | cCa | cTa | 1 | 1 | B.1.210 | 0.002132 |
ORF1ab/nsp3 | 1103 | P1103L | cCa | cTa | 1 | 1 | B.1.214.2 | 0.0006 |
ORF1ab/nsp3 | 1103 | P1103S | Cca | Tca | 1 | 1 | B.1.22 | 0.001318 |
ORF1ab/nsp3 | 1103 | P1103L | cCa | cTa | 1 | 1 | B.1.220 | 0.01087 |
ORF1ab/nsp3 | 1103 | P1103S | Cca | Tca | 1 | 1 | B.1.232 | 0.000537 |
ORF1ab/nsp3 | 1103 | P1103Q | cCa | cAa | 1 | 1 | B.1.236 | 0.002053 |
ORF1ab/nsp3 | 1103 | P1103L | cCa | cTa | 1 | 1 | B.1.239 | 0.001221 |
ORF1ab/nsp3 | 1103 | P1103S | Cca | Tca | 1 | 1 | B.1.240 | 0.000216 |
ORF1ab/nsp3 | 1103 | P1103P | ccA | ccC | 1 | 1 | B.1.243 | 0.00007 |
ORF1ab/nsp3 | 1103 | P1103L | cCa | cTa | 1 | 1 | B.1.258.11 | 0.000396 |
ORF1ab/nsp3 | 1103 | P1103L | cCa | cTa | 1 | 1 | B.1.258.14 | 0.00098 |
ORF1ab/nsp3 | 1103 | P1103T | Cca | Aca | 1 | 1 | B.1.258.17 | 0.000104 |
ORF1ab/nsp3 | 1103 | P1103S | Cca | Tca | 1 | 1 | B.1.258.4 | 0.003448 |
ORF1ab/nsp3 | 1103 | P1103L | cCa | cTa | 1 | 1 | B.1.267 | 0.018519 |
ORF1ab/nsp3 | 1103 | P1103L | cCa | cTa | 1 | 1 | B.1.279 | 0.000514 |
ORF1ab/nsp3 | 1103 | P1103S | Cca | Tca | 1 | 1 | B.1.279 | 0.000514 |
ORF1ab/nsp3 | 1103 | P1103L | cCa | cTa | 1 | 1 | B.1.310 | 0.047619 |
ORF1ab/nsp3 | 1103 | P1103S | Cca | Tca | 1 | 1 | B.1.324 | 0.001605 |
ORF1ab/nsp3 | 1103 | P1103S | Cca | Tca | 1 | 1 | B.1.349 | 0.000715 |
ORF1ab/nsp3 | 1103 | P1103del | CCA | --- | 1 | 1 | B.1.351 | 0.00003 |
ORF1ab/nsp3 | 1103 | P1103P | ccA | ccG | 1 | 1 | B.1.351 | 0.00003 |
ORF1ab/nsp3 | 1103 | P1103S | Cca | Tca | 1 | 1 | B.1.351.2 | 0.000303 |
ORF1ab/nsp3 | 1103 | P1103S | Cca | Tca | 1 | 1 | B.1.351.5 | 0.0006 |
ORF1ab/nsp3 | 1103 | P1103S | Cca | Tca | 1 | 1 | B.1.359 | 0.022727 |
ORF1ab/nsp3 | 1103 | P1103Q | cCa | cAa | 1 | 1 | B.1.36 | 0.000146 |
ORF1ab/nsp3 | 1103 | P1103L | cCa | cTa | 1 | 1 | B.1.36.10 | 0.004785 |
ORF1ab/nsp3 | 1103 | P1103L | cCa | cTa | 1 | 1 | B.1.36.19 | 0.009259 |
ORF1ab/nsp3 | 1103 | P1103L | cCa | cTa | 1 | 1 | B.1.36.22 | 0.001208 |
ORF1ab/nsp3 | 1103 | P1103S | Cca | Tca | 1 | 1 | B.1.36.29 | 0.000517 |
ORF1ab/nsp3 | 1103 | P1103L | cCa | cTa | 1 | 1 | B.1.36.35 | 0.002604 |
ORF1ab/nsp3 | 1103 | P1103S | Cca | Tca | 1 | 1 | B.1.36.37 | 0.002778 |
ORF1ab/nsp3 | 1103 | P1103S | Cca | Tca | 1 | 1 | B.1.36.39 | 0.002217 |
ORF1ab/nsp3 | 1103 | P1103S | Cca | Tca | 1 | 1 | B.1.36.8 | 0.001 |
ORF1ab/nsp3 | 1103 | P1103L | cCa | cTa | 1 | 1 | B.1.361 | 0.001289 |
ORF1ab/nsp3 | 1103 | P1103S | Cca | Tca | 1 | 1 | B.1.367 | 0.000792 |
ORF1ab/nsp3 | 1103 | P1103S | Cca | Tca | 1 | 1 | B.1.369 | 0.000285 |
ORF1ab/nsp3 | 1103 | P1103L | cCa | cTa | 1 | 1 | B.1.369 | 0.000285 |
ORF1ab/nsp3 | 1103 | P1103L | cCa | cTa | 1 | 1 | B.1.371 | 0.001122 |
ORF1ab/nsp3 | 1103 | P1103S | Cca | Tca | 1 | 1 | B.1.371 | 0.001122 |
ORF1ab/nsp3 | 1103 | P1103L | cCa | cTa | 1 | 1 | B.1.375 | 0.00082 |
ORF1ab/nsp3 | 1103 | P1103L | cCa | cTa | 1 | 1 | B.1.378 | 0.006849 |
ORF1ab/nsp3 | 1103 | P1103S | Cca | Tca | 1 | 1 | B.1.389 | 0.001002 |
ORF1ab/nsp3 | 1103 | P1103L | cCa | cTa | 1 | 1 | B.1.397 | 0.004854 |
ORF1ab/nsp3 | 1103 | P1103S | Cca | Tca | 1 | 1 | B.1.398 | 0.002976 |
ORF1ab/nsp3 | 1103 | P1103L | cCa | cTa | 1 | 1 | B.1.399 | 0.001934 |
ORF1ab/nsp3 | 1103 | P1103L | cCa | cTa | 1 | 1 | B.1.400 | 0.000429 |
ORF1ab/nsp3 | 1103 | P1103S | Cca | Tca | 1 | 1 | B.1.403 | 0.003268 |
ORF1ab/nsp3 | 1103 | P1103L | cCa | cTa | 1 | 1 | B.1.416.1 | 0.001563 |
ORF1ab/nsp3 | 1103 | P1103del | CCA | --- | 1 | 1 | B.1.416.1 | 0.001563 |
ORF1ab/nsp3 | 1103 | P1103L | cCa | cTa | 1 | 1 | B.1.426 | 0.001009 |
ORF1ab/nsp3 | 1103 | P1103S | Cca | Tca | 1 | 1 | B.1.426 | 0.001009 |
ORF1ab/nsp3 | 1103 | P1103Q | cCa | cAa | 1 | 1 | B.1.427 | 0.00005 |
ORF1ab/nsp3 | 1103 | P1103S | Cca | Tca | 1 | 1 | B.1.432 | 0.011236 |
ORF1ab/nsp3 | 1103 | P1103L | cCa | cTa | 1 | 1 | B.1.438.1 | 0.000107 |
ORF1ab/nsp3 | 1103 | P1103L | cCa | cTa | 1 | 1 | B.1.438.2 | 0.019231 |
ORF1ab/nsp3 | 1103 | P1103L | cCa | cTa | 1 | 1 | B.1.456 | 0.003268 |
ORF1ab/nsp3 | 1103 | P1103R | cCa | cGa | 1 | 1 | B.1.460 | 0.017857 |
ORF1ab/nsp3 | 1103 | P1103L | cCa | cTa | 1 | 1 | B.1.466.2 | 0.000391 |
ORF1ab/nsp3 | 1103 | P1103L | cCa | cTa | 1 | 1 | B.1.470 | 0.001404 |
ORF1ab/nsp3 | 1103 | P1103L | cCa | cTa | 1 | 1 | B.1.473 | 0.019231 |
ORF1ab/nsp3 | 1103 | P1103del2 | cCA | c-- | 1 | 1 | B.1.487 | 0.019608 |
ORF1ab/nsp3 | 1103 | P1103S | Cca | Tca | 1 | 1 | B.1.509 | 0.000866 |
ORF1ab/nsp3 | 1103 | P1103del1 | ccA | cc- | 1 | 1 | B.1.516 | 0.001957 |
ORF1ab/nsp3 | 1103 | P1103A | Cca | Gca | 1 | 1 | B.1.525 | 0.000113 |
ORF1ab/nsp3 | 1103 | P1103del | CCA | --- | 1 | 1 | B.1.526 | 0.000024 |
ORF1ab/nsp3 | 1103 | P1103S | Cca | Tca | 1 | 1 | B.1.530 | 0.007143 |
ORF1ab/nsp3 | 1103 | P1103L | cCa | cTa | 1 | 1 | B.1.533 | 0.009615 |
ORF1ab/nsp3 | 1103 | P1103L | cCa | cTa | 1 | 1 | B.1.537 | 0.02 |
ORF1ab/nsp3 | 1103 | P1103S | Cca | Tca | 1 | 1 | B.1.537 | 0.02 |
ORF1ab/nsp3 | 1103 | P1103L | cCa | cTa | 1 | 1 | B.1.540 | 0.009709 |
ORF1ab/nsp3 | 1103 | P1103S | Cca | Tca | 1 | 1 | B.1.543 | 0.01 |
ORF1ab/nsp3 | 1103 | P1103L | cCa | cTa | 1 | 1 | B.1.546 | 0.003704 |
ORF1ab/nsp3 | 1103 | P1103S | Cca | Tca | 1 | 1 | B.1.560 | 0.00463 |
ORF1ab/nsp3 | 1103 | P1103L | cCa | cTa | 1 | 1 | B.1.561 | 0.000397 |
ORF1ab/nsp3 | 1103 | P1103L | cCa | cTa | 1 | 1 | B.1.564 | 0.000426 |
ORF1ab/nsp3 | 1103 | P1103S | Cca | Tca | 1 | 1 | B.1.564 | 0.000426 |
ORF1ab/nsp3 | 1103 | P1103S | Cca | Tca | 1 | 1 | B.1.574 | 0.002151 |
ORF1ab/nsp3 | 1103 | P1103S | Cca | Tca | 1 | 1 | B.1.576 | 0.000907 |
ORF1ab/nsp3 | 1103 | P1103L | cCa | cTa | 1 | 1 | B.1.577 | 0.000687 |
ORF1ab/nsp3 | 1103 | P1103del1 | ccA | cc- | 1 | 1 | B.1.595 | 0.000261 |
ORF1ab/nsp3 | 1103 | P1103Q | cCa | cAa | 1 | 1 | B.1.609 | 0.000479 |
ORF1ab/nsp3 | 1103 | P1103S | Cca | Tca | 1 | 1 | B.1.611 | 0.04 |
ORF1ab/nsp3 | 1103 | P1103S | Cca | Tca | 1 | 1 | B.1.617.1 | 0.000129 |
ORF1ab/nsp3 | 1103 | P1103P | ccA | ccG | 1 | 1 | B.1.617.1 | 0.000129 |
ORF1ab/nsp3 | 1103 | P1103L | cCa | cTa | 1 | 1 | B.1.621.1 | 0.000506 |
ORF1ab/nsp3 | 1103 | P1103L | cCa | cTa | 1 | 1 | B.1.623 | 0.000536 |
ORF1ab/nsp3 | 1103 | P1103S | Cca | Tca | 1 | 1 | B.1.625 | 0.002353 |
ORF1ab/nsp3 | 1103 | P1103L | cCa | cTa | 1 | 1 | B.1.628 | 0.000352 |
ORF1ab/nsp3 | 1103 | P1103S | Cca | Tca | 1 | 1 | B.1.634 | 0.003425 |
ORF1ab/nsp3 | 1103 | P1103S | Cca | Tca | 1 | 1 | B.1.69 | 0.035714 |
ORF1ab/nsp3 | 1103 | P1103L | cCa | cTa | 1 | 1 | B.1.78 | 0.008547 |
ORF1ab/nsp3 | 1103 | P1103L | cCa | cTa | 1 | 1 | B.1.9 | 0.006173 |
ORF1ab/nsp3 | 1103 | P1103del | CCA | --- | 1 | 1 | B.15 | 0.017544 |
ORF1ab/nsp3 | 1103 | P1103S | Cca | Tca | 1 | 1 | B.52 | 0.010101 |
ORF1ab/nsp3 | 1103 | P1103L | cCa | cTa | 1 | 1 | B.6 | 0.00091 |
ORF1ab/nsp3 | 1103 | P1103T | Cca | Aca | 1 | 1 | B.6 | 0.00091 |
ORF1ab/nsp3 | 1103 | P1103L | cCa | cTa | 1 | 1 | B.6.6 | 0.000889 |
ORF1ab/nsp3 | 1103 | P1103L | cCa | cTa | 1 | 1 | C.30 | 0.001727 |
ORF1ab/nsp3 | 1103 | P1103del2 | cCA | c-- | 1 | 1 | C.35 | 0.000774 |
ORF1ab/nsp3 | 1103 | P1103L | cCa | cTa | 1 | 1 | C.35 | 0.000774 |
ORF1ab/nsp3 | 1103 | P1103S | Cca | Tca | 1 | 1 | C.35 | 0.000774 |
ORF1ab/nsp3 | 1103 | P1103P | ccA | ccG | 1 | 1 | C.37 | 0.000116 |
ORF1ab/nsp3 | 1103 | P1103L | cCa | cTa | 1 | 1 | C.39 | 0.018868 |
ORF1ab/nsp3 | 1103 | P1103L | cCa | cTa | 1 | 1 | D.2 | 0.000075 |
ORF1ab/nsp3 | 1103 | P1103P | ccA | ccT | 1 | 1 | N.5 | 0.001767 |
ORF1ab/nsp3 | 1103 | P1103L | cCa | cTa | 1 | 1 | N.5 | 0.001767 |
ORF1ab/nsp3 | 1103 | P1103L | cCa | cTa | 1 | 1 | N.6 | 0.007092 |
ORF1ab/nsp3 | 1103 | P1103Q | cCa | cAa | 1 | 1 | P.1 | 0.000016 |
ORF1ab/nsp3 | 1103 | P1103T | Cca | Aca | 1 | 1 | P.1 | 0.000016 |
ORF1ab/nsp3 | 1103 | P1103A | Cca | Gca | 1 | 1 | P.1 | 0.000016 |
ORF1ab/nsp3 | 1103 | P1103L | cCa | cTa | 1 | 1 | P.1.1 | 0.000318 |
ORF1ab/nsp3 | 1103 | P1103S | Cca | Tca | 1 | 1 | P.1.9 | 0.004808 |
ORF1ab/nsp3 | 1103 | P1103P | ccA | ccC | 1 | 1 | P.2 | 0.000187 |
ORF1ab/nsp3 | 1103 | P1103S | Cca | Tca | 1 | 1 | Q.1 | 0.000126 |
ORF1ab/nsp3 | 1103 | P1103del | CCA | --- | 1 | 1 | Q.1 | 0.000126 |
ORF1ab/nsp3 | 1103 | P1103P | ccA | ccG | 1 | 1 | Q.1 | 0.000126 |
ORF1ab/nsp3 | 1103 | P1103S | Cca | Tca | 1 | 1 | Q.2 | 0.000613 |
ORF1ab/nsp3 | 1103 | P1103L | cCa | cTa | 1 | 1 | Q.4 | 0.000455 |
ORF1ab/nsp3 | 1103 | P1103del1 | ccA | cc- | 1 | 1 | Q.8 | 0.000165 |
ORF1ab/nsp3 | 1103 | P1103P | ccA | ccG | 1 | 1 | Q.8 | 0.000165 |
![]() |
![]() |
CoV-GLUE is still in development. CoV-GLUE was originally developed as part of COG-UK by Josh Singer using the GLUE framework at the MRC-University of Glasgow Centre for Virus Research (CVR). In 2021 it was redeveloped by Richard Orton to scale to the millions of genome sequences available. We acknowledge support from the MRC (MC_UU_12014/12), WT (220977/Z/20/Z) and UKRI G2P (MR/W005611/1). Please contact Richard Orton with any queries: Richard.Orton@glasgow.ac.uk
|