CoV-GLUE | Mutations | Mutation
Details of the codons used for the mutation across all lineages (CodonProp is the proportion each codon is used for this AA mutation):
ORF | CodonNum | Mut | ORF1abMut | MutType | RefCodon | MutCodon | AACount | CodonCount | CodonProp | Genome Position |
ORF1ab/nsp3 | 110 | D110D | D928D | syn | gaT | gaC | 2420 | 2420 | 1 | 3047-3049 |
Details of the mutation no within lineages (LineageCodonProp is the proportion the codon is observed at, at this particular site, on each lineage):
ORF | CodonNum | Mut | RefCodon | MutCodon | CodonCount | AACount | Lineage | LineageCodonProp |
ORF1ab/nsp3 | 110 | D110D | gaT | gaC | 2420 | 2420 | All | 0.000463 |
ORF1ab/nsp3 | 110 | D110D | gaT | gaC | 747 | 747 | P.1 | 0.011768 |
ORF1ab/nsp3 | 110 | D110D | gaT | gaC | 339 | 339 | B.1.1.7 | 0.000303 |
ORF1ab/nsp3 | 110 | D110D | gaT | gaC | 250 | 250 | AY.4 | 0.000389 |
ORF1ab/nsp3 | 110 | D110D | gaT | gaC | 177 | 177 | B.1.1.237 | 0.956757 |
ORF1ab/nsp3 | 110 | D110D | gaT | gaC | 148 | 148 | AY.43 | 0.000656 |
ORF1ab/nsp3 | 110 | D110D | gaT | gaC | 61 | 61 | B.1.617.2 | 0.00023 |
ORF1ab/nsp3 | 110 | D110D | gaT | gaC | 54 | 54 | AY.9.2 | 0.001983 |
ORF1ab/nsp3 | 110 | D110D | gaT | gaC | 42 | 42 | B.1.315 | 0.254545 |
ORF1ab/nsp3 | 110 | D110D | gaT | gaC | 37 | 37 | B.1.177 | 0.000487 |
ORF1ab/nsp3 | 110 | D110D | gaT | gaC | 32 | 32 | AY.26 | 0.000906 |
ORF1ab/nsp3 | 110 | D110D | gaT | gaC | 32 | 32 | B.1.2 | 0.000282 |
ORF1ab/nsp3 | 110 | D110D | gaT | gaC | 29 | 29 | AY.121 | 0.003924 |
ORF1ab/nsp3 | 110 | D110D | gaT | gaC | 27 | 27 | AY.25 | 0.000162 |
ORF1ab/nsp3 | 110 | D110D | gaT | gaC | 25 | 25 | AY.103 | 0.000155 |
ORF1ab/nsp3 | 110 | D110D | gaT | gaC | 25 | 25 | AY.44 | 0.000152 |
ORF1ab/nsp3 | 110 | D110D | gaT | gaC | 22 | 22 | B.1.526 | 0.000517 |
ORF1ab/nsp3 | 110 | D110D | gaT | gaC | 21 | 21 | B.1.621 | 0.001859 |
ORF1ab/nsp3 | 110 | D110D | gaT | gaC | 15 | 15 | AY.39 | 0.000371 |
ORF1ab/nsp3 | 110 | D110D | gaT | gaC | 15 | 15 | B.1.177.81 | 0.00284 |
ORF1ab/nsp3 | 110 | D110D | gaT | gaC | 15 | 15 | C.37 | 0.001741 |
ORF1ab/nsp3 | 110 | D110D | gaT | gaC | 13 | 13 | AY.3 | 0.000129 |
ORF1ab/nsp3 | 110 | D110D | gaT | gaC | 13 | 13 | B.1 | 0.000119 |
ORF1ab/nsp3 | 110 | D110D | gaT | gaC | 11 | 11 | AY.102 | 0.000292 |
ORF1ab/nsp3 | 110 | D110D | gaT | gaC | 11 | 11 | P.1.12 | 0.005324 |
ORF1ab/nsp3 | 110 | D110D | gaT | gaC | 10 | 10 | B.1.351 | 0.000297 |
ORF1ab/nsp3 | 110 | D110D | gaT | gaC | 9 | 9 | AY.62 | 0.003922 |
ORF1ab/nsp3 | 110 | D110D | gaT | gaC | 9 | 9 | P.1.7 | 0.002874 |
ORF1ab/nsp3 | 110 | D110D | gaT | gaC | 8 | 8 | AY.47 | 0.000249 |
ORF1ab/nsp3 | 110 | D110D | gaT | gaC | 7 | 7 | AY.46.6 | 0.000505 |
ORF1ab/nsp3 | 110 | D110D | gaT | gaC | 7 | 7 | AY.61 | 0.000733 |
ORF1ab/nsp3 | 110 | D110D | gaT | gaC | 7 | 7 | B.1.1.39 | 0.003568 |
ORF1ab/nsp3 | 110 | D110D | gaT | gaC | 7 | 7 | B.1.429 | 0.000165 |
ORF1ab/nsp3 | 110 | D110D | gaT | gaC | 6 | 6 | AY.100 | 0.000276 |
ORF1ab/nsp3 | 110 | D110D | gaT | gaC | 6 | 6 | AY.75.1 | 0.001082 |
ORF1ab/nsp3 | 110 | D110D | gaT | gaC | 6 | 6 | B.1.1.37 | 0.001157 |
ORF1ab/nsp3 | 110 | D110D | gaT | gaC | 5 | 5 | AY.29 | 0.000079 |
ORF1ab/nsp3 | 110 | D110D | gaT | gaC | 5 | 5 | B.1.1.318 | 0.001509 |
ORF1ab/nsp3 | 110 | D110D | gaT | gaC | 5 | 5 | B.1.596 | 0.000436 |
ORF1ab/nsp3 | 110 | D110D | gaT | gaC | 5 | 5 | C.36.3 | 0.002836 |
ORF1ab/nsp3 | 110 | D110D | gaT | gaC | 5 | 5 | P.1.15 | 0.001162 |
ORF1ab/nsp3 | 110 | D110D | gaT | gaC | 5 | 5 | Q.1 | 0.000632 |
ORF1ab/nsp3 | 110 | D110D | gaT | gaC | 4 | 4 | AY.110 | 0.000451 |
ORF1ab/nsp3 | 110 | D110D | gaT | gaC | 4 | 4 | AY.20 | 0.000155 |
ORF1ab/nsp3 | 110 | D110D | gaT | gaC | 4 | 4 | AY.4.2 | 0.000087 |
ORF1ab/nsp3 | 110 | D110D | gaT | gaC | 4 | 4 | AY.4.5 | 0.00043 |
ORF1ab/nsp3 | 110 | D110D | gaT | gaC | 4 | 4 | B.1.1.222 | 0.000816 |
ORF1ab/nsp3 | 110 | D110D | gaT | gaC | 4 | 4 | B.1.1.28 | 0.001245 |
ORF1ab/nsp3 | 110 | D110D | gaT | gaC | 4 | 4 | B.1.1.54 | 0.012085 |
ORF1ab/nsp3 | 110 | D110D | gaT | gaC | 4 | 4 | B.1.177.77 | 0.002905 |
ORF1ab/nsp3 | 110 | D110D | gaT | gaC | 3 | 3 | AY.117 | 0.000254 |
ORF1ab/nsp3 | 110 | D110D | gaT | gaC | 3 | 3 | AY.120 | 0.000112 |
ORF1ab/nsp3 | 110 | D110D | gaT | gaC | 3 | 3 | B.1.1 | 0.000054 |
ORF1ab/nsp3 | 110 | D110D | gaT | gaC | 3 | 3 | B.1.1.254 | 0.033708 |
ORF1ab/nsp3 | 110 | D110D | gaT | gaC | 3 | 3 | B.1.36 | 0.000438 |
ORF1ab/nsp3 | 110 | D110D | gaT | gaC | 3 | 3 | B.1.399 | 0.005803 |
ORF1ab/nsp3 | 110 | D110D | gaT | gaC | 3 | 3 | B.1.411 | 0.011111 |
ORF1ab/nsp3 | 110 | D110D | gaT | gaC | 3 | 3 | B.1.438.1 | 0.000322 |
ORF1ab/nsp3 | 110 | D110D | gaT | gaC | 3 | 3 | B.1.609 | 0.001438 |
ORF1ab/nsp3 | 110 | D110D | gaT | gaC | 3 | 3 | P.1.1 | 0.000953 |
ORF1ab/nsp3 | 110 | D110D | gaT | gaC | 3 | 3 | P.1.14 | 0.000143 |
ORF1ab/nsp3 | 110 | D110D | gaT | gaC | 2 | 2 | AY.14 | 0.000176 |
ORF1ab/nsp3 | 110 | D110D | gaT | gaC | 2 | 2 | AY.2 | 0.000712 |
ORF1ab/nsp3 | 110 | D110D | gaT | gaC | 2 | 2 | AY.3.1 | 0.000171 |
ORF1ab/nsp3 | 110 | D110D | gaT | gaC | 2 | 2 | AY.33 | 0.000134 |
ORF1ab/nsp3 | 110 | D110D | gaT | gaC | 2 | 2 | AY.37 | 0.000632 |
ORF1ab/nsp3 | 110 | D110D | gaT | gaC | 2 | 2 | AY.5 | 0.000041 |
ORF1ab/nsp3 | 110 | D110D | gaT | gaC | 2 | 2 | AY.54 | 0.000191 |
ORF1ab/nsp3 | 110 | D110D | gaT | gaC | 2 | 2 | AY.59 | 0.001059 |
ORF1ab/nsp3 | 110 | D110D | gaT | gaC | 2 | 2 | AY.6 | 0.000082 |
ORF1ab/nsp3 | 110 | D110D | gaT | gaC | 2 | 2 | AY.9.1 | 0.000167 |
ORF1ab/nsp3 | 110 | D110D | gaT | gaC | 2 | 2 | B.1.1.219 | 0.01 |
ORF1ab/nsp3 | 110 | D110D | gaT | gaC | 2 | 2 | B.1.1.519 | 0.000079 |
ORF1ab/nsp3 | 110 | D110D | gaT | gaC | 2 | 2 | B.1.221 | 0.000142 |
ORF1ab/nsp3 | 110 | D110D | gaT | gaC | 2 | 2 | B.1.36.22 | 0.002415 |
ORF1ab/nsp3 | 110 | D110D | gaT | gaC | 2 | 2 | B.1.561 | 0.000794 |
ORF1ab/nsp3 | 110 | D110D | gaT | gaC | 2 | 2 | R.1 | 0.00018 |
ORF1ab/nsp3 | 110 | D110D | gaT | gaC | 1 | 1 | AD.2 | 0.000219 |
ORF1ab/nsp3 | 110 | D110D | gaT | gaC | 1 | 1 | AY.1 | 0.000396 |
ORF1ab/nsp3 | 110 | D110D | gaT | gaC | 1 | 1 | AY.113 | 0.000142 |
ORF1ab/nsp3 | 110 | D110D | gaT | gaC | 1 | 1 | AY.116.1 | 0.000311 |
ORF1ab/nsp3 | 110 | D110D | gaT | gaC | 1 | 1 | AY.21 | 0.001898 |
ORF1ab/nsp3 | 110 | D110D | gaT | gaC | 1 | 1 | AY.23.1 | 0.000417 |
ORF1ab/nsp3 | 110 | D110D | gaT | gaC | 1 | 1 | AY.27 | 0.000065 |
ORF1ab/nsp3 | 110 | D110D | gaT | gaC | 1 | 1 | AY.34.1 | 0.00051 |
ORF1ab/nsp3 | 110 | D110D | gaT | gaC | 1 | 1 | AY.36 | 0.000148 |
ORF1ab/nsp3 | 110 | D110D | gaT | gaC | 1 | 1 | AY.38 | 0.000499 |
ORF1ab/nsp3 | 110 | D110D | gaT | gaC | 1 | 1 | AY.39.2 | 0.001541 |
ORF1ab/nsp3 | 110 | D110D | gaT | gaC | 1 | 1 | AY.42 | 0.00004 |
ORF1ab/nsp3 | 110 | D110D | gaT | gaC | 1 | 1 | AY.45 | 0.000122 |
ORF1ab/nsp3 | 110 | D110D | gaT | gaC | 1 | 1 | AY.46 | 0.000104 |
ORF1ab/nsp3 | 110 | D110D | gaT | gaC | 1 | 1 | AY.46.4 | 0.000165 |
ORF1ab/nsp3 | 110 | D110D | gaT | gaC | 1 | 1 | AY.65 | 0.000533 |
ORF1ab/nsp3 | 110 | D110D | gaT | gaC | 1 | 1 | AY.73 | 0.000665 |
ORF1ab/nsp3 | 110 | D110D | gaT | gaC | 1 | 1 | AY.75 | 0.000056 |
ORF1ab/nsp3 | 110 | D110D | gaT | gaC | 1 | 1 | AY.82 | 0.001357 |
ORF1ab/nsp3 | 110 | D110D | gaT | gaC | 1 | 1 | AY.9 | 0.000068 |
ORF1ab/nsp3 | 110 | D110D | gaT | gaC | 1 | 1 | AY.91 | 0.00073 |
ORF1ab/nsp3 | 110 | D110D | gaT | gaC | 1 | 1 | AY.95 | 0.000761 |
ORF1ab/nsp3 | 110 | D110D | gaT | gaC | 1 | 1 | AY.99.2 | 0.000092 |
ORF1ab/nsp3 | 110 | D110D | gaT | gaC | 1 | 1 | AZ.2 | 0.000821 |
ORF1ab/nsp3 | 110 | D110D | gaT | gaC | 1 | 1 | B.1.1.176 | 0.000439 |
ORF1ab/nsp3 | 110 | D110D | gaT | gaC | 1 | 1 | B.1.1.316 | 0.000925 |
ORF1ab/nsp3 | 110 | D110D | gaT | gaC | 1 | 1 | B.1.1.41 | 0.006329 |
ORF1ab/nsp3 | 110 | D110D | gaT | gaC | 1 | 1 | B.1.1.434 | 0.000349 |
ORF1ab/nsp3 | 110 | D110D | gaT | gaC | 1 | 1 | B.1.1.528 | 0.004808 |
ORF1ab/nsp3 | 110 | D110D | gaT | gaC | 1 | 1 | B.1.126 | 0.001276 |
ORF1ab/nsp3 | 110 | D110D | gaT | gaC | 1 | 1 | B.1.13 | 0.002375 |
ORF1ab/nsp3 | 110 | D110D | gaT | gaC | 1 | 1 | B.1.160.32 | 0.004292 |
ORF1ab/nsp3 | 110 | D110D | gaT | gaC | 1 | 1 | B.1.177.11 | 0.001698 |
ORF1ab/nsp3 | 110 | D110D | gaT | gaC | 1 | 1 | B.1.177.16 | 0.000664 |
ORF1ab/nsp3 | 110 | D110D | gaT | gaC | 1 | 1 | B.1.177.21 | 0.000076 |
ORF1ab/nsp3 | 110 | D110D | gaT | gaC | 1 | 1 | B.1.177.46 | 0.000918 |
ORF1ab/nsp3 | 110 | D110D | gaT | gaC | 1 | 1 | B.1.177.50 | 0.004695 |
ORF1ab/nsp3 | 110 | D110D | gaT | gaC | 1 | 1 | B.1.177.6 | 0.000977 |
ORF1ab/nsp3 | 110 | D110D | gaT | gaC | 1 | 1 | B.1.243 | 0.00007 |
ORF1ab/nsp3 | 110 | D110D | gaT | gaC | 1 | 1 | B.1.258 | 0.000067 |
ORF1ab/nsp3 | 110 | D110D | gaT | gaC | 1 | 1 | B.1.258.17 | 0.000104 |
ORF1ab/nsp3 | 110 | D110D | gaT | gaC | 1 | 1 | B.1.258.7 | 0.001912 |
ORF1ab/nsp3 | 110 | D110D | gaT | gaC | 1 | 1 | B.1.324 | 0.001605 |
ORF1ab/nsp3 | 110 | D110D | gaT | gaC | 1 | 1 | B.1.36.35 | 0.002604 |
ORF1ab/nsp3 | 110 | D110D | gaT | gaC | 1 | 1 | B.1.429.1 | 0.012048 |
ORF1ab/nsp3 | 110 | D110D | gaT | gaC | 1 | 1 | B.1.466.2 | 0.000391 |
ORF1ab/nsp3 | 110 | D110D | gaT | gaC | 1 | 1 | B.1.525 | 0.000113 |
ORF1ab/nsp3 | 110 | D110D | gaT | gaC | 1 | 1 | B.31 | 0.003731 |
ORF1ab/nsp3 | 110 | D110D | gaT | gaC | 1 | 1 | C.36.3.1 | 0.002717 |
ORF1ab/nsp3 | 110 | D110D | gaT | gaC | 1 | 1 | P.2 | 0.000187 |
CoV-GLUE is still in development. CoV-GLUE was originally developed as part of COG-UK by Josh Singer using the GLUE framework at the MRC-University of Glasgow Centre for Virus Research (CVR). In 2021 it was redeveloped by Richard Orton to scale to the millions of genome sequences available. We acknowledge support from the MRC (MC_UU_12014/12), WT (220977/Z/20/Z) and UKRI G2P (MR/W005611/1). Please contact Richard Orton with any queries: Richard.Orton@glasgow.ac.uk
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