CoV-GLUE | Mutations | Mutation
Details of the codons used for the mutation across all lineages (CodonProp is the proportion each codon is used for this AA mutation):
ORF | CodonNum | Mut | ORF1abMut | MutType | RefCodon | MutCodon | AACount | CodonCount | CodonProp | Genome Position |
ORF1ab/nsp3 | 110 | D110Y | D928Y | nonsyn | Gat | Tat | 3289 | 3289 | 1 | 3047-3049 |
Details of the mutation no within lineages (LineageCodonProp is the proportion the codon is observed at, at this particular site, on each lineage):
ORF | CodonNum | Mut | RefCodon | MutCodon | CodonCount | AACount | Lineage | LineageCodonProp |
ORF1ab/nsp3 | 110 | D110Y | Gat | Tat | 3289 | 3289 | All | 0.000629 |
ORF1ab/nsp3 | 110 | D110Y | Gat | Tat | 1249 | 1249 | AY.4 | 0.001944 |
ORF1ab/nsp3 | 110 | D110Y | Gat | Tat | 548 | 548 | B.1.1.7 | 0.000491 |
ORF1ab/nsp3 | 110 | D110Y | Gat | Tat | 261 | 261 | AY.44 | 0.001589 |
ORF1ab/nsp3 | 110 | D110Y | Gat | Tat | 134 | 134 | R.1 | 0.012061 |
ORF1ab/nsp3 | 110 | D110Y | Gat | Tat | 120 | 120 | B.1.617.2 | 0.000452 |
ORF1ab/nsp3 | 110 | D110Y | Gat | Tat | 73 | 73 | AY.43 | 0.000323 |
ORF1ab/nsp3 | 110 | D110Y | Gat | Tat | 63 | 63 | B.1.526 | 0.001481 |
ORF1ab/nsp3 | 110 | D110Y | Gat | Tat | 44 | 44 | AY.25 | 0.000265 |
ORF1ab/nsp3 | 110 | D110Y | Gat | Tat | 41 | 41 | AY.29 | 0.000647 |
ORF1ab/nsp3 | 110 | D110Y | Gat | Tat | 37 | 37 | B.1.177.16 | 0.024585 |
ORF1ab/nsp3 | 110 | D110Y | Gat | Tat | 36 | 36 | B.1.1.297 | 0.080537 |
ORF1ab/nsp3 | 110 | D110Y | Gat | Tat | 34 | 34 | AY.103 | 0.000211 |
ORF1ab/nsp3 | 110 | D110Y | Gat | Tat | 30 | 30 | B.1 | 0.000275 |
ORF1ab/nsp3 | 110 | D110Y | Gat | Tat | 30 | 30 | B.1.401 | 0.245902 |
ORF1ab/nsp3 | 110 | D110Y | Gat | Tat | 27 | 27 | B.1.1 | 0.00049 |
ORF1ab/nsp3 | 110 | D110Y | Gat | Tat | 20 | 20 | B.1.628 | 0.007047 |
ORF1ab/nsp3 | 110 | D110Y | Gat | Tat | 17 | 17 | AY.117 | 0.001437 |
ORF1ab/nsp3 | 110 | D110Y | Gat | Tat | 17 | 17 | B.1.1.63 | 0.006559 |
ORF1ab/nsp3 | 110 | D110Y | Gat | Tat | 17 | 17 | P.1 | 0.000268 |
ORF1ab/nsp3 | 110 | D110Y | Gat | Tat | 16 | 16 | AY.20 | 0.000622 |
ORF1ab/nsp3 | 110 | D110Y | Gat | Tat | 16 | 16 | B.1.1.519 | 0.000635 |
ORF1ab/nsp3 | 110 | D110Y | Gat | Tat | 14 | 14 | AY.39 | 0.000346 |
ORF1ab/nsp3 | 110 | D110Y | Gat | Tat | 14 | 14 | B.1.160 | 0.000437 |
ORF1ab/nsp3 | 110 | D110Y | Gat | Tat | 14 | 14 | B.1.177 | 0.000184 |
ORF1ab/nsp3 | 110 | D110Y | Gat | Tat | 14 | 14 | B.1.2 | 0.000123 |
ORF1ab/nsp3 | 110 | D110Y | Gat | Tat | 13 | 13 | AY.17 | 0.106557 |
ORF1ab/nsp3 | 110 | D110Y | Gat | Tat | 13 | 13 | AY.3 | 0.000129 |
ORF1ab/nsp3 | 110 | D110Y | Gat | Tat | 13 | 13 | B.1.1.322 | 0.114035 |
ORF1ab/nsp3 | 110 | D110Y | Gat | Tat | 12 | 12 | AY.102 | 0.000318 |
ORF1ab/nsp3 | 110 | D110Y | Gat | Tat | 10 | 10 | AY.100 | 0.00046 |
ORF1ab/nsp3 | 110 | D110Y | Gat | Tat | 10 | 10 | AY.77 | 0.011274 |
ORF1ab/nsp3 | 110 | D110Y | Gat | Tat | 10 | 10 | B.1.177.56 | 0.006676 |
ORF1ab/nsp3 | 110 | D110Y | Gat | Tat | 10 | 10 | B.1.234 | 0.001319 |
ORF1ab/nsp3 | 110 | D110Y | Gat | Tat | 10 | 10 | B.1.243 | 0.000696 |
ORF1ab/nsp3 | 110 | D110Y | Gat | Tat | 10 | 10 | B.1.279 | 0.005136 |
ORF1ab/nsp3 | 110 | D110Y | Gat | Tat | 9 | 9 | AY.26 | 0.000255 |
ORF1ab/nsp3 | 110 | D110Y | Gat | Tat | 9 | 9 | AY.33 | 0.000601 |
ORF1ab/nsp3 | 110 | D110Y | Gat | Tat | 9 | 9 | AY.4.2.1 | 0.001341 |
ORF1ab/nsp3 | 110 | D110Y | Gat | Tat | 9 | 9 | AY.46.6 | 0.00065 |
ORF1ab/nsp3 | 110 | D110Y | Gat | Tat | 9 | 9 | AY.5 | 0.000186 |
ORF1ab/nsp3 | 110 | D110Y | Gat | Tat | 9 | 9 | Q.1 | 0.001137 |
ORF1ab/nsp3 | 110 | D110Y | Gat | Tat | 8 | 8 | AY.116.1 | 0.002491 |
ORF1ab/nsp3 | 110 | D110Y | Gat | Tat | 8 | 8 | AY.9.2 | 0.000294 |
ORF1ab/nsp3 | 110 | D110Y | Gat | Tat | 8 | 8 | B.1.1.216 | 0.007124 |
ORF1ab/nsp3 | 110 | D110Y | Gat | Tat | 8 | 8 | B.1.429 | 0.000188 |
ORF1ab/nsp3 | 110 | D110Y | Gat | Tat | 8 | 8 | D.2 | 0.0006 |
ORF1ab/nsp3 | 110 | D110Y | Gat | Tat | 7 | 7 | B.1.1.397 | 0.015766 |
ORF1ab/nsp3 | 110 | D110Y | Gat | Tat | 7 | 7 | B.1.36 | 0.001021 |
ORF1ab/nsp3 | 110 | D110Y | Gat | Tat | 7 | 7 | B.1.617.1 | 0.000903 |
ORF1ab/nsp3 | 110 | D110Y | Gat | Tat | 6 | 6 | B.1.351 | 0.000178 |
ORF1ab/nsp3 | 110 | D110Y | Gat | Tat | 5 | 5 | AY.34 | 0.000485 |
ORF1ab/nsp3 | 110 | D110Y | Gat | Tat | 4 | 4 | A.27 | 0.006623 |
ORF1ab/nsp3 | 110 | D110Y | Gat | Tat | 4 | 4 | AY.4.2 | 0.000087 |
ORF1ab/nsp3 | 110 | D110Y | Gat | Tat | 4 | 4 | AY.9.1 | 0.000335 |
ORF1ab/nsp3 | 110 | D110Y | Gat | Tat | 4 | 4 | AY.98 | 0.000316 |
ORF1ab/nsp3 | 110 | D110Y | Gat | Tat | 4 | 4 | B.1.1.306 | 0.001754 |
ORF1ab/nsp3 | 110 | D110Y | Gat | Tat | 4 | 4 | B.1.480 | 0.00995 |
ORF1ab/nsp3 | 110 | D110Y | Gat | Tat | 4 | 4 | C.37 | 0.000464 |
ORF1ab/nsp3 | 110 | D110Y | Gat | Tat | 3 | 3 | AY.116 | 0.00086 |
ORF1ab/nsp3 | 110 | D110Y | Gat | Tat | 3 | 3 | AY.120 | 0.000112 |
ORF1ab/nsp3 | 110 | D110Y | Gat | Tat | 3 | 3 | AY.37 | 0.000948 |
ORF1ab/nsp3 | 110 | D110Y | Gat | Tat | 3 | 3 | AY.61 | 0.000314 |
ORF1ab/nsp3 | 110 | D110Y | Gat | Tat | 3 | 3 | B.1.221 | 0.000213 |
ORF1ab/nsp3 | 110 | D110Y | Gat | Tat | 3 | 3 | B.1.258 | 0.0002 |
ORF1ab/nsp3 | 110 | D110Y | Gat | Tat | 3 | 3 | B.1.564 | 0.001278 |
ORF1ab/nsp3 | 110 | D110Y | Gat | Tat | 3 | 3 | N.6 | 0.021277 |
ORF1ab/nsp3 | 110 | D110Y | Gat | Tat | 3 | 3 | P.1.7 | 0.000958 |
ORF1ab/nsp3 | 110 | D110Y | Gat | Tat | 2 | 2 | A.28 | 0.005291 |
ORF1ab/nsp3 | 110 | D110Y | Gat | Tat | 2 | 2 | AY.106 | 0.00067 |
ORF1ab/nsp3 | 110 | D110Y | Gat | Tat | 2 | 2 | AY.113 | 0.000285 |
ORF1ab/nsp3 | 110 | D110Y | Gat | Tat | 2 | 2 | AY.118 | 0.000125 |
ORF1ab/nsp3 | 110 | D110Y | Gat | Tat | 2 | 2 | AY.14 | 0.000176 |
ORF1ab/nsp3 | 110 | D110Y | Gat | Tat | 2 | 2 | AY.16 | 0.000759 |
ORF1ab/nsp3 | 110 | D110Y | Gat | Tat | 2 | 2 | AY.23 | 0.000139 |
ORF1ab/nsp3 | 110 | D110Y | Gat | Tat | 2 | 2 | AY.29.1 | 0.000441 |
ORF1ab/nsp3 | 110 | D110Y | Gat | Tat | 2 | 2 | AY.39.1 | 0.000079 |
ORF1ab/nsp3 | 110 | D110Y | Gat | Tat | 2 | 2 | AY.46 | 0.000208 |
ORF1ab/nsp3 | 110 | D110Y | Gat | Tat | 2 | 2 | AY.54 | 0.000191 |
ORF1ab/nsp3 | 110 | D110Y | Gat | Tat | 2 | 2 | AY.70 | 0.000417 |
ORF1ab/nsp3 | 110 | D110Y | Gat | Tat | 2 | 2 | AY.84 | 0.000875 |
ORF1ab/nsp3 | 110 | D110Y | Gat | Tat | 2 | 2 | AY.9 | 0.000135 |
ORF1ab/nsp3 | 110 | D110Y | Gat | Tat | 2 | 2 | B.1.1.222 | 0.000408 |
ORF1ab/nsp3 | 110 | D110Y | Gat | Tat | 2 | 2 | B.1.1.419 | 0.014815 |
ORF1ab/nsp3 | 110 | D110Y | Gat | Tat | 2 | 2 | B.1.126 | 0.002551 |
ORF1ab/nsp3 | 110 | D110Y | Gat | Tat | 2 | 2 | B.1.177.77 | 0.001452 |
ORF1ab/nsp3 | 110 | D110Y | Gat | Tat | 2 | 2 | B.1.427 | 0.000101 |
ORF1ab/nsp3 | 110 | D110Y | Gat | Tat | 2 | 2 | B.1.595 | 0.000522 |
ORF1ab/nsp3 | 110 | D110Y | Gat | Tat | 2 | 2 | B.1.597 | 0.009259 |
ORF1ab/nsp3 | 110 | D110Y | Gat | Tat | 2 | 2 | B.1.618 | 0.008065 |
ORF1ab/nsp3 | 110 | D110Y | Gat | Tat | 2 | 2 | B.1.637 | 0.000146 |
ORF1ab/nsp3 | 110 | D110Y | Gat | Tat | 2 | 2 | P.1.17 | 0.000324 |
ORF1ab/nsp3 | 110 | D110Y | Gat | Tat | 2 | 2 | Q.8 | 0.00033 |
ORF1ab/nsp3 | 110 | D110Y | Gat | Tat | 1 | 1 | A.2 | 0.000662 |
ORF1ab/nsp3 | 110 | D110Y | Gat | Tat | 1 | 1 | A.2.5 | 0.000499 |
ORF1ab/nsp3 | 110 | D110Y | Gat | Tat | 1 | 1 | AU.2 | 0.002421 |
ORF1ab/nsp3 | 110 | D110Y | Gat | Tat | 1 | 1 | AY.105 | 0.000643 |
ORF1ab/nsp3 | 110 | D110Y | Gat | Tat | 1 | 1 | AY.114 | 0.000231 |
ORF1ab/nsp3 | 110 | D110Y | Gat | Tat | 1 | 1 | AY.119 | 0.000035 |
ORF1ab/nsp3 | 110 | D110Y | Gat | Tat | 1 | 1 | AY.12 | 0.000316 |
ORF1ab/nsp3 | 110 | D110Y | Gat | Tat | 1 | 1 | AY.121 | 0.000135 |
ORF1ab/nsp3 | 110 | D110Y | Gat | Tat | 1 | 1 | AY.16.1 | 0.00047 |
ORF1ab/nsp3 | 110 | D110Y | Gat | Tat | 1 | 1 | AY.2 | 0.000356 |
ORF1ab/nsp3 | 110 | D110Y | Gat | Tat | 1 | 1 | AY.4.1 | 0.000737 |
ORF1ab/nsp3 | 110 | D110Y | Gat | Tat | 1 | 1 | AY.4.4 | 0.000409 |
ORF1ab/nsp3 | 110 | D110Y | Gat | Tat | 1 | 1 | AY.4.5 | 0.000107 |
ORF1ab/nsp3 | 110 | D110Y | Gat | Tat | 1 | 1 | AY.42 | 0.00004 |
ORF1ab/nsp3 | 110 | D110Y | Gat | Tat | 1 | 1 | AY.46.4 | 0.000165 |
ORF1ab/nsp3 | 110 | D110Y | Gat | Tat | 1 | 1 | AY.5.3 | 0.000337 |
ORF1ab/nsp3 | 110 | D110Y | Gat | Tat | 1 | 1 | AY.5.4 | 0.000277 |
ORF1ab/nsp3 | 110 | D110Y | Gat | Tat | 1 | 1 | AY.55 | 0.000917 |
ORF1ab/nsp3 | 110 | D110Y | Gat | Tat | 1 | 1 | AY.62 | 0.000436 |
ORF1ab/nsp3 | 110 | D110Y | Gat | Tat | 1 | 1 | AY.7.1 | 0.000113 |
ORF1ab/nsp3 | 110 | D110Y | Gat | Tat | 1 | 1 | AY.71 | 0.000475 |
ORF1ab/nsp3 | 110 | D110Y | Gat | Tat | 1 | 1 | AY.75.1 | 0.00018 |
ORF1ab/nsp3 | 110 | D110Y | Gat | Tat | 1 | 1 | AY.82 | 0.001357 |
ORF1ab/nsp3 | 110 | D110Y | Gat | Tat | 1 | 1 | AY.90 | 0.000684 |
ORF1ab/nsp3 | 110 | D110Y | Gat | Tat | 1 | 1 | AY.98.1 | 0.000048 |
ORF1ab/nsp3 | 110 | D110Y | Gat | Tat | 1 | 1 | AY.99.2 | 0.000092 |
ORF1ab/nsp3 | 110 | D110Y | Gat | Tat | 1 | 1 | AZ.2 | 0.000821 |
ORF1ab/nsp3 | 110 | D110Y | Gat | Tat | 1 | 1 | B.1.1.134 | 0.011364 |
ORF1ab/nsp3 | 110 | D110Y | Gat | Tat | 1 | 1 | B.1.1.214 | 0.000055 |
ORF1ab/nsp3 | 110 | D110Y | Gat | Tat | 1 | 1 | B.1.1.25 | 0.000569 |
ORF1ab/nsp3 | 110 | D110Y | Gat | Tat | 1 | 1 | B.1.1.28 | 0.000311 |
ORF1ab/nsp3 | 110 | D110Y | Gat | Tat | 1 | 1 | B.1.1.317 | 0.000412 |
ORF1ab/nsp3 | 110 | D110Y | Gat | Tat | 1 | 1 | B.1.1.318 | 0.000302 |
ORF1ab/nsp3 | 110 | D110Y | Gat | Tat | 1 | 1 | B.1.1.33 | 0.000421 |
ORF1ab/nsp3 | 110 | D110Y | Gat | Tat | 1 | 1 | B.1.1.432 | 0.001266 |
ORF1ab/nsp3 | 110 | D110Y | Gat | Tat | 1 | 1 | B.1.1.466 | 0.008696 |
ORF1ab/nsp3 | 110 | D110Y | Gat | Tat | 1 | 1 | B.1.111 | 0.001175 |
ORF1ab/nsp3 | 110 | D110Y | Gat | Tat | 1 | 1 | B.1.177.44 | 0.000519 |
ORF1ab/nsp3 | 110 | D110Y | Gat | Tat | 1 | 1 | B.1.177.60 | 0.000218 |
ORF1ab/nsp3 | 110 | D110Y | Gat | Tat | 1 | 1 | B.1.214.2 | 0.0006 |
ORF1ab/nsp3 | 110 | D110Y | Gat | Tat | 1 | 1 | B.1.240 | 0.000216 |
ORF1ab/nsp3 | 110 | D110Y | Gat | Tat | 1 | 1 | B.1.291 | 0.019231 |
ORF1ab/nsp3 | 110 | D110Y | Gat | Tat | 1 | 1 | B.1.311 | 0.000275 |
ORF1ab/nsp3 | 110 | D110Y | Gat | Tat | 1 | 1 | B.1.351.3 | 0.000876 |
ORF1ab/nsp3 | 110 | D110Y | Gat | Tat | 1 | 1 | B.1.438.1 | 0.000107 |
ORF1ab/nsp3 | 110 | D110Y | Gat | Tat | 1 | 1 | B.1.462 | 0.007246 |
ORF1ab/nsp3 | 110 | D110Y | Gat | Tat | 1 | 1 | B.1.466.2 | 0.000391 |
ORF1ab/nsp3 | 110 | D110Y | Gat | Tat | 1 | 1 | B.1.503 | 0.002488 |
ORF1ab/nsp3 | 110 | D110Y | Gat | Tat | 1 | 1 | B.1.561 | 0.000397 |
ORF1ab/nsp3 | 110 | D110Y | Gat | Tat | 1 | 1 | B.1.563 | 0.016949 |
ORF1ab/nsp3 | 110 | D110Y | Gat | Tat | 1 | 1 | B.1.575 | 0.000303 |
ORF1ab/nsp3 | 110 | D110Y | Gat | Tat | 1 | 1 | B.1.626 | 0.005714 |
ORF1ab/nsp3 | 110 | D110Y | Gat | Tat | 1 | 1 | B.1.9.4 | 0.006135 |
ORF1ab/nsp3 | 110 | D110Y | Gat | Tat | 1 | 1 | C.16 | 0.00106 |
ORF1ab/nsp3 | 110 | D110Y | Gat | Tat | 1 | 1 | P.1.1 | 0.000318 |
ORF1ab/nsp3 | 110 | D110Y | Gat | Tat | 1 | 1 | P.1.12 | 0.000484 |
ORF1ab/nsp3 | 110 | D110Y | Gat | Tat | 1 | 1 | P.1.2 | 0.001156 |
ORF1ab/nsp3 | 110 | D110Y | Gat | Tat | 1 | 1 | P.2 | 0.000187 |
ORF1ab/nsp3 | 110 | D110Y | Gat | Tat | 1 | 1 | P.3 | 0.001595 |
ORF1ab/nsp3 | 110 | D110Y | Gat | Tat | 1 | 1 | Q.2 | 0.000613 |
ORF1ab/nsp3 | 110 | D110Y | Gat | Tat | 1 | 1 | Q.7 | 0.001111 |
CoV-GLUE is still in development. CoV-GLUE was originally developed as part of COG-UK by Josh Singer using the GLUE framework at the MRC-University of Glasgow Centre for Virus Research (CVR). In 2021 it was redeveloped by Richard Orton to scale to the millions of genome sequences available. We acknowledge support from the MRC (MC_UU_12014/12), WT (220977/Z/20/Z) and UKRI G2P (MR/W005611/1). Please contact Richard Orton with any queries: Richard.Orton@glasgow.ac.uk
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