CoV-GLUE | Mutations | Mutation
Details of the codons used for the mutation across all lineages (CodonProp is the proportion each codon is used for this AA mutation):
ORF | CodonNum | Mut | ORF1abMut | MutType | RefCodon | MutCodon | AACount | CodonCount | CodonProp | Genome Position |
ORF1ab/nsp3 | 110 | D110Y | D928Y | nonsyn | Gat | Tat | 3289 | 3289 | 1 | 3047-3049 |
ORF1ab/nsp3 | 110 | D110D | D928D | syn | gaT | gaC | 2420 | 2420 | 1 | 3047-3049 |
ORF1ab/nsp3 | 110 | D110E | D928E | nonsyn | gaT | gaG | 1238 | 868 | 0.701131 | 3047-3049 |
ORF1ab/nsp3 | 110 | D110E | D928E | nonsyn | gaT | gaA | 1238 | 370 | 0.298869 | 3047-3049 |
ORF1ab/nsp3 | 110 | D110G | D928G | nonsyn | gAt | gGt | 639 | 638 | 0.998435 | 3047-3049 |
ORF1ab/nsp3 | 110 | D110G | D928G | nonsyn | gAT | gGA | 639 | 1 | 0.00156495 | 3047-3049 |
ORF1ab/nsp3 | 110 | D110N | D928N | nonsyn | Gat | Aat | 216 | 216 | 1 | 3047-3049 |
ORF1ab/nsp3 | 110 | D110A | D928A | nonsyn | gAt | gCt | 201 | 200 | 0.995025 | 3047-3049 |
ORF1ab/nsp3 | 110 | D110A | D928A | nonsyn | gAT | gCA | 201 | 1 | 0.00497512 | 3047-3049 |
ORF1ab/nsp3 | 110 | D110del | D928del | del | GAT | --- | 44 | 44 | 1 | 3047-3049 |
ORF1ab/nsp3 | 110 | D110V | D928V | nonsyn | gAt | gTt | 29 | 27 | 0.931035 | 3047-3049 |
ORF1ab/nsp3 | 110 | D110V | D928V | nonsyn | gAT | gTA | 29 | 1 | 0.0344828 | 3047-3049 |
ORF1ab/nsp3 | 110 | D110V | D928V | nonsyn | gAT | gTG | 29 | 1 | 0.0344828 | 3047-3049 |
ORF1ab/nsp3 | 110 | D110H | D928H | nonsyn | Gat | Cat | 20 | 20 | 1 | 3047-3049 |
ORF1ab/nsp3 | 110 | D110del1 | D928del1 | del | Gat | -at | 5 | 3 | 0.6 | 3047-3049 |
ORF1ab/nsp3 | 110 | D110del1 | D928del1 | del | gaT | ga- | 5 | 1 | 0.2 | 3047-3049 |
ORF1ab/nsp3 | 110 | D110del1 | D928del1 | del | gAt | g-t | 5 | 1 | 0.2 | 3047-3049 |
ORF1ab/nsp3 | 110 | D110F | D928F | nonsyn | GAt | TTt | 3 | 3 | 1 | 3047-3049 |
ORF1ab/nsp3 | 110 | D110del2 | D928del2 | del | gAT | g-- | 2 | 2 | 1 | 3047-3049 |
ORF1ab/nsp3 | 110 | D110K | D928K | nonsyn | GaT | AaA | 2 | 2 | 1 | 3047-3049 |
ORF1ab/nsp3 | 110 | D110S | D928S | nonsyn | GAt | AGt | 1 | 1 | 1 | 3047-3049 |
ORF1ab/nsp3 | 110 | D110L | D928L | nonsyn | GAT | TTA | 1 | 1 | 1 | 3047-3049 |
ORF1ab/nsp3 | 110 | D110X | D928X | nonsyn | GaT | TaA | 1 | 1 | 1 | 3047-3049 |
Details of the mutation no within lineages (LineageCodonProp is the proportion the codon is observed at, at this particular site, on each lineage):
ORF | CodonNum | Mut | RefCodon | MutCodon | CodonCount | AACount | Lineage | LineageCodonProp |
ORF1ab/nsp3 | 110 | D110Y | Gat | Tat | 3289 | 3289 | All | 0.000629 |
ORF1ab/nsp3 | 110 | D110D | gaT | gaC | 2420 | 2420 | All | 0.000463 |
ORF1ab/nsp3 | 110 | D110Y | Gat | Tat | 1249 | 1249 | AY.4 | 0.001944 |
ORF1ab/nsp3 | 110 | D110E | gaT | gaG | 868 | 1238 | All | 0.000166 |
ORF1ab/nsp3 | 110 | D110E | gaT | gaA | 370 | 1238 | All | 0.000071 |
ORF1ab/nsp3 | 110 | D110E | gaT | gaG | 785 | 785 | B.1.2 | 0.006912 |
ORF1ab/nsp3 | 110 | D110D | gaT | gaC | 747 | 747 | P.1 | 0.011768 |
ORF1ab/nsp3 | 110 | D110G | gAt | gGt | 638 | 639 | All | 0.000122 |
ORF1ab/nsp3 | 110 | D110G | gAT | gGA | 1 | 639 | All | 0 |
ORF1ab/nsp3 | 110 | D110Y | Gat | Tat | 548 | 548 | B.1.1.7 | 0.000491 |
ORF1ab/nsp3 | 110 | D110D | gaT | gaC | 339 | 339 | B.1.1.7 | 0.000303 |
ORF1ab/nsp3 | 110 | D110E | gaT | gaA | 277 | 282 | B.1.1.7 | 0.000248 |
ORF1ab/nsp3 | 110 | D110E | gaT | gaG | 5 | 282 | B.1.1.7 | 0.000004 |
ORF1ab/nsp3 | 110 | D110Y | Gat | Tat | 261 | 261 | AY.44 | 0.001589 |
ORF1ab/nsp3 | 110 | D110D | gaT | gaC | 250 | 250 | AY.4 | 0.000389 |
ORF1ab/nsp3 | 110 | D110G | gAt | gGt | 224 | 224 | AY.4 | 0.000349 |
ORF1ab/nsp3 | 110 | D110N | Gat | Aat | 216 | 216 | All | 0.000041 |
ORF1ab/nsp3 | 110 | D110A | gAt | gCt | 200 | 201 | All | 0.000038 |
ORF1ab/nsp3 | 110 | D110A | gAT | gCA | 1 | 201 | All | 0 |
ORF1ab/nsp3 | 110 | D110D | gaT | gaC | 177 | 177 | B.1.1.237 | 0.956757 |
ORF1ab/nsp3 | 110 | D110D | gaT | gaC | 148 | 148 | AY.43 | 0.000656 |
ORF1ab/nsp3 | 110 | D110Y | Gat | Tat | 134 | 134 | R.1 | 0.012061 |
ORF1ab/nsp3 | 110 | D110Y | Gat | Tat | 120 | 120 | B.1.617.2 | 0.000452 |
ORF1ab/nsp3 | 110 | D110G | gAt | gGt | 83 | 83 | AY.103 | 0.000515 |
ORF1ab/nsp3 | 110 | D110Y | Gat | Tat | 73 | 73 | AY.43 | 0.000323 |
ORF1ab/nsp3 | 110 | D110G | gAt | gGt | 64 | 64 | B.1.1.7 | 0.000057 |
ORF1ab/nsp3 | 110 | D110Y | Gat | Tat | 63 | 63 | B.1.526 | 0.001481 |
ORF1ab/nsp3 | 110 | D110D | gaT | gaC | 61 | 61 | B.1.617.2 | 0.00023 |
ORF1ab/nsp3 | 110 | D110D | gaT | gaC | 54 | 54 | AY.9.2 | 0.001983 |
ORF1ab/nsp3 | 110 | D110A | gAt | gCt | 50 | 50 | C.36.3 | 0.028361 |
ORF1ab/nsp3 | 110 | D110G | gAt | gGt | 45 | 45 | B.1.617.2 | 0.000169 |
ORF1ab/nsp3 | 110 | D110del | GAT | --- | 44 | 44 | All | 0.000008 |
ORF1ab/nsp3 | 110 | D110Y | Gat | Tat | 44 | 44 | AY.25 | 0.000265 |
ORF1ab/nsp3 | 110 | D110N | Gat | Aat | 43 | 43 | AY.4 | 0.000067 |
ORF1ab/nsp3 | 110 | D110D | gaT | gaC | 42 | 42 | B.1.315 | 0.254545 |
ORF1ab/nsp3 | 110 | D110Y | Gat | Tat | 41 | 41 | AY.29 | 0.000647 |
ORF1ab/nsp3 | 110 | D110A | gAt | gCt | 40 | 40 | AY.27 | 0.002589 |
ORF1ab/nsp3 | 110 | D110G | gAt | gGt | 38 | 38 | AY.44 | 0.000231 |
ORF1ab/nsp3 | 110 | D110A | gAt | gCt | 37 | 37 | AY.4 | 0.000058 |
ORF1ab/nsp3 | 110 | D110D | gaT | gaC | 37 | 37 | B.1.177 | 0.000487 |
ORF1ab/nsp3 | 110 | D110Y | Gat | Tat | 37 | 37 | B.1.177.16 | 0.024585 |
ORF1ab/nsp3 | 110 | D110Y | Gat | Tat | 36 | 36 | B.1.1.297 | 0.080537 |
ORF1ab/nsp3 | 110 | D110Y | Gat | Tat | 34 | 34 | AY.103 | 0.000211 |
ORF1ab/nsp3 | 110 | D110D | gaT | gaC | 32 | 32 | AY.26 | 0.000906 |
ORF1ab/nsp3 | 110 | D110D | gaT | gaC | 32 | 32 | B.1.2 | 0.000282 |
ORF1ab/nsp3 | 110 | D110Y | Gat | Tat | 30 | 30 | B.1 | 0.000275 |
ORF1ab/nsp3 | 110 | D110Y | Gat | Tat | 30 | 30 | B.1.401 | 0.245902 |
ORF1ab/nsp3 | 110 | D110V | gAt | gTt | 27 | 29 | All | 0.000005 |
ORF1ab/nsp3 | 110 | D110V | gAT | gTA | 1 | 29 | All | 0 |
ORF1ab/nsp3 | 110 | D110V | gAT | gTG | 1 | 29 | All | 0 |
ORF1ab/nsp3 | 110 | D110D | gaT | gaC | 29 | 29 | AY.121 | 0.003924 |
ORF1ab/nsp3 | 110 | D110G | gAt | gGt | 29 | 29 | P.1 | 0.000457 |
ORF1ab/nsp3 | 110 | D110D | gaT | gaC | 27 | 27 | AY.25 | 0.000162 |
ORF1ab/nsp3 | 110 | D110Y | Gat | Tat | 27 | 27 | B.1.1 | 0.00049 |
ORF1ab/nsp3 | 110 | D110E | gaT | gaA | 26 | 26 | AY.27 | 0.001683 |
ORF1ab/nsp3 | 110 | D110G | gAt | gGt | 26 | 26 | B.1.429 | 0.000612 |
ORF1ab/nsp3 | 110 | D110D | gaT | gaC | 25 | 25 | AY.103 | 0.000155 |
ORF1ab/nsp3 | 110 | D110D | gaT | gaC | 25 | 25 | AY.44 | 0.000152 |
ORF1ab/nsp3 | 110 | D110A | gAt | gCt | 25 | 25 | B.1.1.7 | 0.000022 |
ORF1ab/nsp3 | 110 | D110N | Gat | Aat | 25 | 25 | P.1.17 | 0.004044 |
ORF1ab/nsp3 | 110 | D110N | Gat | Aat | 24 | 24 | AY.26 | 0.000679 |
ORF1ab/nsp3 | 110 | D110N | Gat | Aat | 23 | 23 | B.1.1.7 | 0.000021 |
ORF1ab/nsp3 | 110 | D110D | gaT | gaC | 22 | 22 | B.1.526 | 0.000517 |
ORF1ab/nsp3 | 110 | D110D | gaT | gaC | 21 | 21 | B.1.621 | 0.001859 |
ORF1ab/nsp3 | 110 | D110H | Gat | Cat | 20 | 20 | All | 0.000004 |
ORF1ab/nsp3 | 110 | D110Y | Gat | Tat | 20 | 20 | B.1.628 | 0.007047 |
ORF1ab/nsp3 | 110 | D110Y | Gat | Tat | 17 | 17 | AY.117 | 0.001437 |
ORF1ab/nsp3 | 110 | D110Y | Gat | Tat | 17 | 17 | B.1.1.63 | 0.006559 |
ORF1ab/nsp3 | 110 | D110Y | Gat | Tat | 17 | 17 | P.1 | 0.000268 |
ORF1ab/nsp3 | 110 | D110Y | Gat | Tat | 16 | 16 | AY.20 | 0.000622 |
ORF1ab/nsp3 | 110 | D110Y | Gat | Tat | 16 | 16 | B.1.1.519 | 0.000635 |
ORF1ab/nsp3 | 110 | D110E | gaT | gaG | 15 | 16 | B.1.617.2 | 0.000056 |
ORF1ab/nsp3 | 110 | D110E | gaT | gaA | 1 | 16 | B.1.617.2 | 0.000004 |
ORF1ab/nsp3 | 110 | D110D | gaT | gaC | 15 | 15 | AY.39 | 0.000371 |
ORF1ab/nsp3 | 110 | D110D | gaT | gaC | 15 | 15 | B.1.177.81 | 0.00284 |
ORF1ab/nsp3 | 110 | D110D | gaT | gaC | 15 | 15 | C.37 | 0.001741 |
ORF1ab/nsp3 | 110 | D110Y | Gat | Tat | 14 | 14 | AY.39 | 0.000346 |
ORF1ab/nsp3 | 110 | D110Y | Gat | Tat | 14 | 14 | B.1.160 | 0.000437 |
ORF1ab/nsp3 | 110 | D110Y | Gat | Tat | 14 | 14 | B.1.177 | 0.000184 |
ORF1ab/nsp3 | 110 | D110E | gaT | gaA | 14 | 14 | B.1.177 | 0.000184 |
ORF1ab/nsp3 | 110 | D110Y | Gat | Tat | 14 | 14 | B.1.2 | 0.000123 |
ORF1ab/nsp3 | 110 | D110Y | Gat | Tat | 13 | 13 | AY.17 | 0.106557 |
ORF1ab/nsp3 | 110 | D110Y | Gat | Tat | 13 | 13 | AY.3 | 0.000129 |
ORF1ab/nsp3 | 110 | D110D | gaT | gaC | 13 | 13 | AY.3 | 0.000129 |
ORF1ab/nsp3 | 110 | D110G | gAt | gGt | 13 | 13 | AY.37 | 0.004109 |
ORF1ab/nsp3 | 110 | D110D | gaT | gaC | 13 | 13 | B.1 | 0.000119 |
ORF1ab/nsp3 | 110 | D110Y | Gat | Tat | 13 | 13 | B.1.1.322 | 0.114035 |
ORF1ab/nsp3 | 110 | D110Y | Gat | Tat | 12 | 12 | AY.102 | 0.000318 |
ORF1ab/nsp3 | 110 | D110E | gaT | gaA | 12 | 12 | AY.3 | 0.000119 |
ORF1ab/nsp3 | 110 | D110D | gaT | gaC | 11 | 11 | AY.102 | 0.000292 |
ORF1ab/nsp3 | 110 | D110N | Gat | Aat | 11 | 11 | AY.64 | 0.006548 |
ORF1ab/nsp3 | 110 | D110D | gaT | gaC | 11 | 11 | P.1.12 | 0.005324 |
ORF1ab/nsp3 | 110 | D110Y | Gat | Tat | 10 | 10 | AY.100 | 0.00046 |
ORF1ab/nsp3 | 110 | D110E | gaT | gaG | 10 | 10 | AY.43 | 0.000044 |
ORF1ab/nsp3 | 110 | D110Y | Gat | Tat | 10 | 10 | AY.77 | 0.011274 |
ORF1ab/nsp3 | 110 | D110Y | Gat | Tat | 10 | 10 | B.1.177.56 | 0.006676 |
ORF1ab/nsp3 | 110 | D110Y | Gat | Tat | 10 | 10 | B.1.234 | 0.001319 |
ORF1ab/nsp3 | 110 | D110Y | Gat | Tat | 10 | 10 | B.1.243 | 0.000696 |
ORF1ab/nsp3 | 110 | D110Y | Gat | Tat | 10 | 10 | B.1.279 | 0.005136 |
ORF1ab/nsp3 | 110 | D110D | gaT | gaC | 10 | 10 | B.1.351 | 0.000297 |
ORF1ab/nsp3 | 110 | D110A | gAt | gCt | 9 | 10 | B.1.429 | 0.000212 |
ORF1ab/nsp3 | 110 | D110A | gAT | gCA | 1 | 10 | B.1.429 | 0.000024 |
ORF1ab/nsp3 | 110 | D110E | gaT | gaA | 10 | 10 | P.1.14 | 0.000478 |
ORF1ab/nsp3 | 110 | D110Y | Gat | Tat | 9 | 9 | AY.26 | 0.000255 |
ORF1ab/nsp3 | 110 | D110Y | Gat | Tat | 9 | 9 | AY.33 | 0.000601 |
ORF1ab/nsp3 | 110 | D110Y | Gat | Tat | 9 | 9 | AY.4.2.1 | 0.001341 |
ORF1ab/nsp3 | 110 | D110Y | Gat | Tat | 9 | 9 | AY.46.6 | 0.00065 |
ORF1ab/nsp3 | 110 | D110Y | Gat | Tat | 9 | 9 | AY.5 | 0.000186 |
ORF1ab/nsp3 | 110 | D110D | gaT | gaC | 9 | 9 | AY.62 | 0.003922 |
ORF1ab/nsp3 | 110 | D110N | Gat | Aat | 9 | 9 | B.1.617.2 | 0.000034 |
ORF1ab/nsp3 | 110 | D110D | gaT | gaC | 9 | 9 | P.1.7 | 0.002874 |
ORF1ab/nsp3 | 110 | D110Y | Gat | Tat | 9 | 9 | Q.1 | 0.001137 |
ORF1ab/nsp3 | 110 | D110Y | Gat | Tat | 8 | 8 | AY.116.1 | 0.002491 |
ORF1ab/nsp3 | 110 | D110G | gAt | gGt | 8 | 8 | AY.46 | 0.000833 |
ORF1ab/nsp3 | 110 | D110D | gaT | gaC | 8 | 8 | AY.47 | 0.000249 |
ORF1ab/nsp3 | 110 | D110Y | Gat | Tat | 8 | 8 | AY.9.2 | 0.000294 |
ORF1ab/nsp3 | 110 | D110Y | Gat | Tat | 8 | 8 | B.1.1.216 | 0.007124 |
ORF1ab/nsp3 | 110 | D110G | gAt | gGt | 7 | 8 | B.1.2 | 0.000062 |
ORF1ab/nsp3 | 110 | D110G | gAT | gGA | 1 | 8 | B.1.2 | 0.000009 |
ORF1ab/nsp3 | 110 | D110Y | Gat | Tat | 8 | 8 | B.1.429 | 0.000188 |
ORF1ab/nsp3 | 110 | D110G | gAt | gGt | 8 | 8 | B.1.497 | 0.002518 |
ORF1ab/nsp3 | 110 | D110V | gAt | gTt | 8 | 8 | D.2 | 0.0006 |
ORF1ab/nsp3 | 110 | D110Y | Gat | Tat | 8 | 8 | D.2 | 0.0006 |
ORF1ab/nsp3 | 110 | D110D | gaT | gaC | 7 | 7 | AY.46.6 | 0.000505 |
ORF1ab/nsp3 | 110 | D110N | Gat | Aat | 7 | 7 | AY.47 | 0.000218 |
ORF1ab/nsp3 | 110 | D110D | gaT | gaC | 7 | 7 | AY.61 | 0.000733 |
ORF1ab/nsp3 | 110 | D110G | gAt | gGt | 7 | 7 | AY.69 | 0.001307 |
ORF1ab/nsp3 | 110 | D110N | Gat | Aat | 7 | 7 | B.1 | 0.000064 |
ORF1ab/nsp3 | 110 | D110E | gaT | gaG | 7 | 7 | B.1 | 0.000064 |
ORF1ab/nsp3 | 110 | D110E | gaT | gaG | 5 | 7 | B.1.1.237 | 0.027027 |
ORF1ab/nsp3 | 110 | D110E | gaT | gaA | 2 | 7 | B.1.1.237 | 0.010811 |
ORF1ab/nsp3 | 110 | D110D | gaT | gaC | 7 | 7 | B.1.1.39 | 0.003568 |
ORF1ab/nsp3 | 110 | D110Y | Gat | Tat | 7 | 7 | B.1.1.397 | 0.015766 |
ORF1ab/nsp3 | 110 | D110E | gaT | gaA | 6 | 7 | B.1.351 | 0.000178 |
ORF1ab/nsp3 | 110 | D110E | gaT | gaG | 1 | 7 | B.1.351 | 0.00003 |
ORF1ab/nsp3 | 110 | D110Y | Gat | Tat | 7 | 7 | B.1.36 | 0.001021 |
ORF1ab/nsp3 | 110 | D110D | gaT | gaC | 7 | 7 | B.1.429 | 0.000165 |
ORF1ab/nsp3 | 110 | D110Y | Gat | Tat | 7 | 7 | B.1.617.1 | 0.000903 |
ORF1ab/nsp3 | 110 | D110A | gAt | gCt | 7 | 7 | B.1.617.2 | 0.000026 |
ORF1ab/nsp3 | 110 | D110D | gaT | gaC | 6 | 6 | AY.100 | 0.000276 |
ORF1ab/nsp3 | 110 | D110A | gAt | gCt | 6 | 6 | AY.39 | 0.000148 |
ORF1ab/nsp3 | 110 | D110E | gaT | gaG | 5 | 6 | AY.44 | 0.00003 |
ORF1ab/nsp3 | 110 | D110E | gaT | gaA | 1 | 6 | AY.44 | 0.000006 |
ORF1ab/nsp3 | 110 | D110D | gaT | gaC | 6 | 6 | AY.75.1 | 0.001082 |
ORF1ab/nsp3 | 110 | D110G | gAt | gGt | 6 | 6 | B.1 | 0.000055 |
ORF1ab/nsp3 | 110 | D110N | Gat | Aat | 6 | 6 | B.1.1.33 | 0.002525 |
ORF1ab/nsp3 | 110 | D110D | gaT | gaC | 6 | 6 | B.1.1.37 | 0.001157 |
ORF1ab/nsp3 | 110 | D110Y | Gat | Tat | 6 | 6 | B.1.351 | 0.000178 |
ORF1ab/nsp3 | 110 | D110del1 | Gat | -at | 3 | 5 | All | 0.000001 |
ORF1ab/nsp3 | 110 | D110del1 | gaT | ga- | 1 | 5 | All | 0 |
ORF1ab/nsp3 | 110 | D110del1 | gAt | g-t | 1 | 5 | All | 0 |
ORF1ab/nsp3 | 110 | D110G | gAt | gGt | 5 | 5 | AY.117 | 0.000423 |
ORF1ab/nsp3 | 110 | D110E | gaT | gaG | 5 | 5 | AY.25 | 0.00003 |
ORF1ab/nsp3 | 110 | D110V | gAt | gTt | 5 | 5 | AY.29 | 0.000079 |
ORF1ab/nsp3 | 110 | D110D | gaT | gaC | 5 | 5 | AY.29 | 0.000079 |
ORF1ab/nsp3 | 110 | D110Y | Gat | Tat | 5 | 5 | AY.34 | 0.000485 |
ORF1ab/nsp3 | 110 | D110N | Gat | Aat | 5 | 5 | AY.98 | 0.000395 |
ORF1ab/nsp3 | 110 | D110D | gaT | gaC | 5 | 5 | B.1.1.318 | 0.001509 |
ORF1ab/nsp3 | 110 | D110A | gAt | gCt | 5 | 5 | B.1.258 | 0.000333 |
ORF1ab/nsp3 | 110 | D110N | Gat | Aat | 5 | 5 | B.1.526 | 0.000118 |
ORF1ab/nsp3 | 110 | D110D | gaT | gaC | 5 | 5 | B.1.596 | 0.000436 |
ORF1ab/nsp3 | 110 | D110D | gaT | gaC | 5 | 5 | C.36.3 | 0.002836 |
ORF1ab/nsp3 | 110 | D110D | gaT | gaC | 5 | 5 | P.1.15 | 0.001162 |
ORF1ab/nsp3 | 110 | D110D | gaT | gaC | 5 | 5 | Q.1 | 0.000632 |
ORF1ab/nsp3 | 110 | D110del | GAT | --- | 4 | 4 | 0.222222 | |
ORF1ab/nsp3 | 110 | D110Y | Gat | Tat | 4 | 4 | A.27 | 0.006623 |
ORF1ab/nsp3 | 110 | D110D | gaT | gaC | 4 | 4 | AY.110 | 0.000451 |
ORF1ab/nsp3 | 110 | D110D | gaT | gaC | 4 | 4 | AY.20 | 0.000155 |
ORF1ab/nsp3 | 110 | D110E | gaT | gaG | 3 | 4 | AY.4 | 0.000005 |
ORF1ab/nsp3 | 110 | D110E | gaT | gaA | 1 | 4 | AY.4 | 0.000002 |
ORF1ab/nsp3 | 110 | D110D | gaT | gaC | 4 | 4 | AY.4.2 | 0.000087 |
ORF1ab/nsp3 | 110 | D110Y | Gat | Tat | 4 | 4 | AY.4.2 | 0.000087 |
ORF1ab/nsp3 | 110 | D110D | gaT | gaC | 4 | 4 | AY.4.5 | 0.00043 |
ORF1ab/nsp3 | 110 | D110G | gAt | gGt | 4 | 4 | AY.43 | 0.000018 |
ORF1ab/nsp3 | 110 | D110G | gAt | gGt | 4 | 4 | AY.46.6 | 0.000289 |
ORF1ab/nsp3 | 110 | D110Y | Gat | Tat | 4 | 4 | AY.9.1 | 0.000335 |
ORF1ab/nsp3 | 110 | D110Y | Gat | Tat | 4 | 4 | AY.98 | 0.000316 |
ORF1ab/nsp3 | 110 | D110del | GAT | --- | 4 | 4 | B.1 | 0.000037 |
ORF1ab/nsp3 | 110 | D110D | gaT | gaC | 4 | 4 | B.1.1.222 | 0.000816 |
ORF1ab/nsp3 | 110 | D110D | gaT | gaC | 4 | 4 | B.1.1.28 | 0.001245 |
ORF1ab/nsp3 | 110 | D110Y | Gat | Tat | 4 | 4 | B.1.1.306 | 0.001754 |
ORF1ab/nsp3 | 110 | D110D | gaT | gaC | 4 | 4 | B.1.1.54 | 0.012085 |
ORF1ab/nsp3 | 110 | D110D | gaT | gaC | 4 | 4 | B.1.177.77 | 0.002905 |
ORF1ab/nsp3 | 110 | D110N | Gat | Aat | 4 | 4 | B.1.243 | 0.000278 |
ORF1ab/nsp3 | 110 | D110E | gaT | gaG | 2 | 4 | B.1.258 | 0.000133 |
ORF1ab/nsp3 | 110 | D110E | gaT | gaA | 2 | 4 | B.1.258 | 0.000133 |
ORF1ab/nsp3 | 110 | D110Y | Gat | Tat | 4 | 4 | B.1.480 | 0.00995 |
ORF1ab/nsp3 | 110 | D110Y | Gat | Tat | 4 | 4 | C.37 | 0.000464 |
ORF1ab/nsp3 | 110 | D110E | gaT | gaA | 4 | 4 | Q.1 | 0.000505 |
ORF1ab/nsp3 | 110 | D110G | gAt | gGt | 3 | 3 | A | 0.001161 |
ORF1ab/nsp3 | 110 | D110F | GAt | TTt | 3 | 3 | All | 0.000001 |
ORF1ab/nsp3 | 110 | D110G | gAt | gGt | 3 | 3 | AY.100 | 0.000138 |
ORF1ab/nsp3 | 110 | D110E | gaT | gaA | 2 | 3 | AY.103 | 0.000012 |
ORF1ab/nsp3 | 110 | D110E | gaT | gaG | 1 | 3 | AY.103 | 0.000006 |
ORF1ab/nsp3 | 110 | D110Y | Gat | Tat | 3 | 3 | AY.116 | 0.00086 |
ORF1ab/nsp3 | 110 | D110D | gaT | gaC | 3 | 3 | AY.117 | 0.000254 |
ORF1ab/nsp3 | 110 | D110Y | Gat | Tat | 3 | 3 | AY.120 | 0.000112 |
ORF1ab/nsp3 | 110 | D110D | gaT | gaC | 3 | 3 | AY.120 | 0.000112 |
ORF1ab/nsp3 | 110 | D110G | gAt | gGt | 3 | 3 | AY.23 | 0.000209 |
ORF1ab/nsp3 | 110 | D110Y | Gat | Tat | 3 | 3 | AY.37 | 0.000948 |
ORF1ab/nsp3 | 110 | D110G | gAt | gGt | 3 | 3 | AY.39 | 0.000074 |
ORF1ab/nsp3 | 110 | D110del | GAT | --- | 3 | 3 | AY.4 | 0.000005 |
ORF1ab/nsp3 | 110 | D110G | gAt | gGt | 3 | 3 | AY.5 | 0.000062 |
ORF1ab/nsp3 | 110 | D110Y | Gat | Tat | 3 | 3 | AY.61 | 0.000314 |
ORF1ab/nsp3 | 110 | D110G | gAt | gGt | 3 | 3 | B.1.1 | 0.000054 |
ORF1ab/nsp3 | 110 | D110D | gaT | gaC | 3 | 3 | B.1.1 | 0.000054 |
ORF1ab/nsp3 | 110 | D110D | gaT | gaC | 3 | 3 | B.1.1.254 | 0.033708 |
ORF1ab/nsp3 | 110 | D110del | GAT | --- | 3 | 3 | B.1.1.33 | 0.001263 |
ORF1ab/nsp3 | 110 | D110del | GAT | --- | 3 | 3 | B.1.1.7 | 0.000003 |
ORF1ab/nsp3 | 110 | D110H | Gat | Cat | 3 | 3 | B.1.177 | 0.00004 |
ORF1ab/nsp3 | 110 | D110N | Gat | Aat | 3 | 3 | B.1.177.6 | 0.00293 |
ORF1ab/nsp3 | 110 | D110Y | Gat | Tat | 3 | 3 | B.1.221 | 0.000213 |
ORF1ab/nsp3 | 110 | D110Y | Gat | Tat | 3 | 3 | B.1.258 | 0.0002 |
ORF1ab/nsp3 | 110 | D110G | gAt | gGt | 3 | 3 | B.1.349 | 0.002144 |
ORF1ab/nsp3 | 110 | D110E | gaT | gaG | 3 | 3 | B.1.351.3 | 0.002629 |
ORF1ab/nsp3 | 110 | D110D | gaT | gaC | 3 | 3 | B.1.36 | 0.000438 |
ORF1ab/nsp3 | 110 | D110E | gaT | gaG | 3 | 3 | B.1.36 | 0.000438 |
ORF1ab/nsp3 | 110 | D110N | Gat | Aat | 3 | 3 | B.1.36 | 0.000438 |
ORF1ab/nsp3 | 110 | D110D | gaT | gaC | 3 | 3 | B.1.399 | 0.005803 |
ORF1ab/nsp3 | 110 | D110D | gaT | gaC | 3 | 3 | B.1.411 | 0.011111 |
ORF1ab/nsp3 | 110 | D110D | gaT | gaC | 3 | 3 | B.1.438.1 | 0.000322 |
ORF1ab/nsp3 | 110 | D110Y | Gat | Tat | 3 | 3 | B.1.564 | 0.001278 |
ORF1ab/nsp3 | 110 | D110E | gaT | gaG | 3 | 3 | B.1.596 | 0.000261 |
ORF1ab/nsp3 | 110 | D110D | gaT | gaC | 3 | 3 | B.1.609 | 0.001438 |
ORF1ab/nsp3 | 110 | D110H | Gat | Cat | 3 | 3 | D.2 | 0.000225 |
ORF1ab/nsp3 | 110 | D110G | gAt | gGt | 3 | 3 | N.5 | 0.0053 |
ORF1ab/nsp3 | 110 | D110Y | Gat | Tat | 3 | 3 | N.6 | 0.021277 |
ORF1ab/nsp3 | 110 | D110D | gaT | gaC | 3 | 3 | P.1.1 | 0.000953 |
ORF1ab/nsp3 | 110 | D110D | gaT | gaC | 3 | 3 | P.1.14 | 0.000143 |
ORF1ab/nsp3 | 110 | D110Y | Gat | Tat | 3 | 3 | P.1.7 | 0.000958 |
ORF1ab/nsp3 | 110 | D110V | gAt | gTt | 2 | 2 | 0.111111 | |
ORF1ab/nsp3 | 110 | D110G | gAt | gGt | 2 | 2 | 0.111111 | |
ORF1ab/nsp3 | 110 | D110Y | Gat | Tat | 2 | 2 | A.28 | 0.005291 |
ORF1ab/nsp3 | 110 | D110del2 | gAT | g-- | 2 | 2 | All | 0 |
ORF1ab/nsp3 | 110 | D110K | GaT | AaA | 2 | 2 | All | 0 |
ORF1ab/nsp3 | 110 | D110A | gAt | gCt | 2 | 2 | AY.1 | 0.000791 |
ORF1ab/nsp3 | 110 | D110A | gAt | gCt | 2 | 2 | AY.103 | 0.000012 |
ORF1ab/nsp3 | 110 | D110V | gAT | gTA | 1 | 2 | AY.105 | 0.000643 |
ORF1ab/nsp3 | 110 | D110V | gAt | gTt | 1 | 2 | AY.105 | 0.000643 |
ORF1ab/nsp3 | 110 | D110Y | Gat | Tat | 2 | 2 | AY.106 | 0.00067 |
ORF1ab/nsp3 | 110 | D110Y | Gat | Tat | 2 | 2 | AY.113 | 0.000285 |
ORF1ab/nsp3 | 110 | D110G | gAt | gGt | 2 | 2 | AY.113 | 0.000285 |
ORF1ab/nsp3 | 110 | D110Y | Gat | Tat | 2 | 2 | AY.118 | 0.000125 |
ORF1ab/nsp3 | 110 | D110D | gaT | gaC | 2 | 2 | AY.14 | 0.000176 |
ORF1ab/nsp3 | 110 | D110Y | Gat | Tat | 2 | 2 | AY.14 | 0.000176 |
ORF1ab/nsp3 | 110 | D110Y | Gat | Tat | 2 | 2 | AY.16 | 0.000759 |
ORF1ab/nsp3 | 110 | D110D | gaT | gaC | 2 | 2 | AY.2 | 0.000712 |
ORF1ab/nsp3 | 110 | D110N | Gat | Aat | 2 | 2 | AY.20 | 0.000078 |
ORF1ab/nsp3 | 110 | D110G | gAt | gGt | 2 | 2 | AY.20 | 0.000078 |
ORF1ab/nsp3 | 110 | D110Y | Gat | Tat | 2 | 2 | AY.23 | 0.000139 |
ORF1ab/nsp3 | 110 | D110A | gAt | gCt | 2 | 2 | AY.25 | 0.000012 |
ORF1ab/nsp3 | 110 | D110N | Gat | Aat | 2 | 2 | AY.25 | 0.000012 |
ORF1ab/nsp3 | 110 | D110G | gAt | gGt | 2 | 2 | AY.29 | 0.000032 |
ORF1ab/nsp3 | 110 | D110Y | Gat | Tat | 2 | 2 | AY.29.1 | 0.000441 |
ORF1ab/nsp3 | 110 | D110N | Gat | Aat | 2 | 2 | AY.3 | 0.00002 |
ORF1ab/nsp3 | 110 | D110D | gaT | gaC | 2 | 2 | AY.3.1 | 0.000171 |
ORF1ab/nsp3 | 110 | D110D | gaT | gaC | 2 | 2 | AY.33 | 0.000134 |
ORF1ab/nsp3 | 110 | D110H | Gat | Cat | 2 | 2 | AY.33 | 0.000134 |
ORF1ab/nsp3 | 110 | D110D | gaT | gaC | 2 | 2 | AY.37 | 0.000632 |
ORF1ab/nsp3 | 110 | D110Y | Gat | Tat | 2 | 2 | AY.39.1 | 0.000079 |
ORF1ab/nsp3 | 110 | D110G | gAt | gGt | 2 | 2 | AY.39.1 | 0.000079 |
ORF1ab/nsp3 | 110 | D110H | Gat | Cat | 2 | 2 | AY.4 | 0.000003 |
ORF1ab/nsp3 | 110 | D110N | Gat | Aat | 2 | 2 | AY.43 | 0.000009 |
ORF1ab/nsp3 | 110 | D110Y | Gat | Tat | 2 | 2 | AY.46 | 0.000208 |
ORF1ab/nsp3 | 110 | D110D | gaT | gaC | 2 | 2 | AY.5 | 0.000041 |
ORF1ab/nsp3 | 110 | D110N | Gat | Aat | 2 | 2 | AY.5.4 | 0.000553 |
ORF1ab/nsp3 | 110 | D110Y | Gat | Tat | 2 | 2 | AY.54 | 0.000191 |
ORF1ab/nsp3 | 110 | D110D | gaT | gaC | 2 | 2 | AY.54 | 0.000191 |
ORF1ab/nsp3 | 110 | D110D | gaT | gaC | 2 | 2 | AY.59 | 0.001059 |
ORF1ab/nsp3 | 110 | D110N | Gat | Aat | 2 | 2 | AY.59 | 0.001059 |
ORF1ab/nsp3 | 110 | D110D | gaT | gaC | 2 | 2 | AY.6 | 0.000082 |
ORF1ab/nsp3 | 110 | D110Y | Gat | Tat | 2 | 2 | AY.70 | 0.000417 |
ORF1ab/nsp3 | 110 | D110Y | Gat | Tat | 2 | 2 | AY.84 | 0.000875 |
ORF1ab/nsp3 | 110 | D110Y | Gat | Tat | 2 | 2 | AY.9 | 0.000135 |
ORF1ab/nsp3 | 110 | D110D | gaT | gaC | 2 | 2 | AY.9.1 | 0.000167 |
ORF1ab/nsp3 | 110 | D110A | gAt | gCt | 2 | 2 | B.1 | 0.000018 |
ORF1ab/nsp3 | 110 | D110E | gaT | gaG | 1 | 2 | B.1.1 | 0.000018 |
ORF1ab/nsp3 | 110 | D110E | gaT | gaA | 1 | 2 | B.1.1 | 0.000018 |
ORF1ab/nsp3 | 110 | D110D | gaT | gaC | 2 | 2 | B.1.1.219 | 0.01 |
ORF1ab/nsp3 | 110 | D110Y | Gat | Tat | 2 | 2 | B.1.1.222 | 0.000408 |
ORF1ab/nsp3 | 110 | D110del | GAT | --- | 2 | 2 | B.1.1.348 | 0.001592 |
ORF1ab/nsp3 | 110 | D110Y | Gat | Tat | 2 | 2 | B.1.1.419 | 0.014815 |
ORF1ab/nsp3 | 110 | D110D | gaT | gaC | 2 | 2 | B.1.1.519 | 0.000079 |
ORF1ab/nsp3 | 110 | D110V | gAt | gTt | 2 | 2 | B.1.1.7 | 0.000002 |
ORF1ab/nsp3 | 110 | D110Y | Gat | Tat | 2 | 2 | B.1.126 | 0.002551 |
ORF1ab/nsp3 | 110 | D110N | Gat | Aat | 2 | 2 | B.1.139 | 0.001466 |
ORF1ab/nsp3 | 110 | D110G | gAt | gGt | 2 | 2 | B.1.177 | 0.000026 |
ORF1ab/nsp3 | 110 | D110G | gAt | gGt | 2 | 2 | B.1.177.37 | 0.054054 |
ORF1ab/nsp3 | 110 | D110Y | Gat | Tat | 2 | 2 | B.1.177.77 | 0.001452 |
ORF1ab/nsp3 | 110 | D110N | Gat | Aat | 2 | 2 | B.1.2 | 0.000018 |
ORF1ab/nsp3 | 110 | D110del | GAT | --- | 2 | 2 | B.1.2 | 0.000018 |
ORF1ab/nsp3 | 110 | D110E | gaT | gaG | 2 | 2 | B.1.221 | 0.000142 |
ORF1ab/nsp3 | 110 | D110D | gaT | gaC | 2 | 2 | B.1.221 | 0.000142 |
ORF1ab/nsp3 | 110 | D110E | gaT | gaA | 2 | 2 | B.1.346 | 0.002621 |
ORF1ab/nsp3 | 110 | D110D | gaT | gaC | 2 | 2 | B.1.36.22 | 0.002415 |
ORF1ab/nsp3 | 110 | D110Y | Gat | Tat | 2 | 2 | B.1.427 | 0.000101 |
ORF1ab/nsp3 | 110 | D110G | gAt | gGt | 2 | 2 | B.1.493 | 0.051282 |
ORF1ab/nsp3 | 110 | D110E | gaT | gaG | 2 | 2 | B.1.526 | 0.000047 |
ORF1ab/nsp3 | 110 | D110D | gaT | gaC | 2 | 2 | B.1.561 | 0.000794 |
ORF1ab/nsp3 | 110 | D110G | gAt | gGt | 2 | 2 | B.1.575 | 0.000607 |
ORF1ab/nsp3 | 110 | D110Y | Gat | Tat | 2 | 2 | B.1.595 | 0.000522 |
ORF1ab/nsp3 | 110 | D110K | GaT | AaA | 2 | 2 | B.1.596 | 0.000174 |
ORF1ab/nsp3 | 110 | D110Y | Gat | Tat | 2 | 2 | B.1.597 | 0.009259 |
ORF1ab/nsp3 | 110 | D110Y | Gat | Tat | 2 | 2 | B.1.618 | 0.008065 |
ORF1ab/nsp3 | 110 | D110Y | Gat | Tat | 2 | 2 | B.1.637 | 0.000146 |
ORF1ab/nsp3 | 110 | D110F | GAt | TTt | 2 | 2 | D.2 | 0.00015 |
ORF1ab/nsp3 | 110 | D110del | GAT | --- | 2 | 2 | N.6 | 0.014184 |
ORF1ab/nsp3 | 110 | D110N | Gat | Aat | 2 | 2 | P.1.14 | 0.000096 |
ORF1ab/nsp3 | 110 | D110Y | Gat | Tat | 2 | 2 | P.1.17 | 0.000324 |
ORF1ab/nsp3 | 110 | D110G | gAt | gGt | 2 | 2 | P.2 | 0.000373 |
ORF1ab/nsp3 | 110 | D110Y | Gat | Tat | 2 | 2 | Q.8 | 0.00033 |
ORF1ab/nsp3 | 110 | D110D | gaT | gaC | 2 | 2 | R.1 | 0.00018 |
ORF1ab/nsp3 | 110 | D110E | gaT | gaA | 1 | 1 | 0.055556 | |
ORF1ab/nsp3 | 110 | D110Y | Gat | Tat | 1 | 1 | A.2 | 0.000662 |
ORF1ab/nsp3 | 110 | D110Y | Gat | Tat | 1 | 1 | A.2.5 | 0.000499 |
ORF1ab/nsp3 | 110 | D110E | gaT | gaG | 1 | 1 | A.6 | 0.005128 |
ORF1ab/nsp3 | 110 | D110D | gaT | gaC | 1 | 1 | AD.2 | 0.000219 |
ORF1ab/nsp3 | 110 | D110S | GAt | AGt | 1 | 1 | All | 0 |
ORF1ab/nsp3 | 110 | D110X | GaT | TaA | 1 | 1 | All | 0 |
ORF1ab/nsp3 | 110 | D110L | GAT | TTA | 1 | 1 | All | 0 |
ORF1ab/nsp3 | 110 | D110Y | Gat | Tat | 1 | 1 | AU.2 | 0.002421 |
ORF1ab/nsp3 | 110 | D110D | gaT | gaC | 1 | 1 | AY.1 | 0.000396 |
ORF1ab/nsp3 | 110 | D110E | gaT | gaA | 1 | 1 | AY.100 | 0.000046 |
ORF1ab/nsp3 | 110 | D110V | gAT | gTG | 1 | 1 | AY.100 | 0.000046 |
ORF1ab/nsp3 | 110 | D110N | Gat | Aat | 1 | 1 | AY.103 | 0.000006 |
ORF1ab/nsp3 | 110 | D110X | GaT | TaA | 1 | 1 | AY.105 | 0.000643 |
ORF1ab/nsp3 | 110 | D110L | GAT | TTA | 1 | 1 | AY.105 | 0.000643 |
ORF1ab/nsp3 | 110 | D110F | GAt | TTt | 1 | 1 | AY.105 | 0.000643 |
ORF1ab/nsp3 | 110 | D110Y | Gat | Tat | 1 | 1 | AY.105 | 0.000643 |
ORF1ab/nsp3 | 110 | D110E | gaT | gaA | 1 | 1 | AY.105 | 0.000643 |
ORF1ab/nsp3 | 110 | D110N | Gat | Aat | 1 | 1 | AY.105 | 0.000643 |
ORF1ab/nsp3 | 110 | D110D | gaT | gaC | 1 | 1 | AY.113 | 0.000142 |
ORF1ab/nsp3 | 110 | D110Y | Gat | Tat | 1 | 1 | AY.114 | 0.000231 |
ORF1ab/nsp3 | 110 | D110D | gaT | gaC | 1 | 1 | AY.116.1 | 0.000311 |
ORF1ab/nsp3 | 110 | D110N | Gat | Aat | 1 | 1 | AY.117 | 0.000085 |
ORF1ab/nsp3 | 110 | D110E | gaT | gaA | 1 | 1 | AY.117 | 0.000085 |
ORF1ab/nsp3 | 110 | D110G | gAt | gGt | 1 | 1 | AY.119 | 0.000035 |
ORF1ab/nsp3 | 110 | D110N | Gat | Aat | 1 | 1 | AY.119 | 0.000035 |
ORF1ab/nsp3 | 110 | D110Y | Gat | Tat | 1 | 1 | AY.119 | 0.000035 |
ORF1ab/nsp3 | 110 | D110Y | Gat | Tat | 1 | 1 | AY.12 | 0.000316 |
ORF1ab/nsp3 | 110 | D110G | gAt | gGt | 1 | 1 | AY.12 | 0.000316 |
ORF1ab/nsp3 | 110 | D110A | gAt | gCt | 1 | 1 | AY.12 | 0.000316 |
ORF1ab/nsp3 | 110 | D110Y | Gat | Tat | 1 | 1 | AY.121 | 0.000135 |
ORF1ab/nsp3 | 110 | D110A | gAt | gCt | 1 | 1 | AY.14 | 0.000088 |
ORF1ab/nsp3 | 110 | D110Y | Gat | Tat | 1 | 1 | AY.16.1 | 0.00047 |
ORF1ab/nsp3 | 110 | D110Y | Gat | Tat | 1 | 1 | AY.2 | 0.000356 |
ORF1ab/nsp3 | 110 | D110D | gaT | gaC | 1 | 1 | AY.21 | 0.001898 |
ORF1ab/nsp3 | 110 | D110D | gaT | gaC | 1 | 1 | AY.23.1 | 0.000417 |
ORF1ab/nsp3 | 110 | D110del | GAT | --- | 1 | 1 | AY.25 | 0.000006 |
ORF1ab/nsp3 | 110 | D110del | GAT | --- | 1 | 1 | AY.26 | 0.000028 |
ORF1ab/nsp3 | 110 | D110G | gAt | gGt | 1 | 1 | AY.26 | 0.000028 |
ORF1ab/nsp3 | 110 | D110D | gaT | gaC | 1 | 1 | AY.27 | 0.000065 |
ORF1ab/nsp3 | 110 | D110H | Gat | Cat | 1 | 1 | AY.27 | 0.000065 |
ORF1ab/nsp3 | 110 | D110del | GAT | --- | 1 | 1 | AY.3 | 0.00001 |
ORF1ab/nsp3 | 110 | D110E | gaT | gaA | 1 | 1 | AY.3.1 | 0.000085 |
ORF1ab/nsp3 | 110 | D110A | gAt | gCt | 1 | 1 | AY.3.1 | 0.000085 |
ORF1ab/nsp3 | 110 | D110G | gAt | gGt | 1 | 1 | AY.3.1 | 0.000085 |
ORF1ab/nsp3 | 110 | D110N | Gat | Aat | 1 | 1 | AY.30 | 0.000396 |
ORF1ab/nsp3 | 110 | D110del | GAT | --- | 1 | 1 | AY.30 | 0.000396 |
ORF1ab/nsp3 | 110 | D110G | gAt | gGt | 1 | 1 | AY.33 | 0.000067 |
ORF1ab/nsp3 | 110 | D110del | GAT | --- | 1 | 1 | AY.34 | 0.000097 |
ORF1ab/nsp3 | 110 | D110D | gaT | gaC | 1 | 1 | AY.34.1 | 0.00051 |
ORF1ab/nsp3 | 110 | D110D | gaT | gaC | 1 | 1 | AY.36 | 0.000148 |
ORF1ab/nsp3 | 110 | D110D | gaT | gaC | 1 | 1 | AY.38 | 0.000499 |
ORF1ab/nsp3 | 110 | D110E | gaT | gaA | 1 | 1 | AY.39 | 0.000025 |
ORF1ab/nsp3 | 110 | D110D | gaT | gaC | 1 | 1 | AY.39.2 | 0.001541 |
ORF1ab/nsp3 | 110 | D110del1 | gaT | ga- | 1 | 1 | AY.4 | 0.000002 |
ORF1ab/nsp3 | 110 | D110Y | Gat | Tat | 1 | 1 | AY.4.1 | 0.000737 |
ORF1ab/nsp3 | 110 | D110G | gAt | gGt | 1 | 1 | AY.4.2 | 0.000022 |
ORF1ab/nsp3 | 110 | D110H | Gat | Cat | 1 | 1 | AY.4.2.1 | 0.000149 |
ORF1ab/nsp3 | 110 | D110Y | Gat | Tat | 1 | 1 | AY.4.4 | 0.000409 |
ORF1ab/nsp3 | 110 | D110Y | Gat | Tat | 1 | 1 | AY.4.5 | 0.000107 |
ORF1ab/nsp3 | 110 | D110D | gaT | gaC | 1 | 1 | AY.42 | 0.00004 |
ORF1ab/nsp3 | 110 | D110del | GAT | --- | 1 | 1 | AY.42 | 0.00004 |
ORF1ab/nsp3 | 110 | D110Y | Gat | Tat | 1 | 1 | AY.42 | 0.00004 |
ORF1ab/nsp3 | 110 | D110A | gAt | gCt | 1 | 1 | AY.43 | 0.000004 |
ORF1ab/nsp3 | 110 | D110del | GAT | --- | 1 | 1 | AY.43 | 0.000004 |
ORF1ab/nsp3 | 110 | D110del2 | gAT | g-- | 1 | 1 | AY.43 | 0.000004 |
ORF1ab/nsp3 | 110 | D110N | Gat | Aat | 1 | 1 | AY.44 | 0.000006 |
ORF1ab/nsp3 | 110 | D110V | gAt | gTt | 1 | 1 | AY.44 | 0.000006 |
ORF1ab/nsp3 | 110 | D110D | gaT | gaC | 1 | 1 | AY.45 | 0.000122 |
ORF1ab/nsp3 | 110 | D110del | GAT | --- | 1 | 1 | AY.46 | 0.000104 |
ORF1ab/nsp3 | 110 | D110D | gaT | gaC | 1 | 1 | AY.46 | 0.000104 |
ORF1ab/nsp3 | 110 | D110Y | Gat | Tat | 1 | 1 | AY.46.4 | 0.000165 |
ORF1ab/nsp3 | 110 | D110D | gaT | gaC | 1 | 1 | AY.46.4 | 0.000165 |
ORF1ab/nsp3 | 110 | D110del | GAT | --- | 1 | 1 | AY.5 | 0.000021 |
ORF1ab/nsp3 | 110 | D110H | Gat | Cat | 1 | 1 | AY.5 | 0.000021 |
ORF1ab/nsp3 | 110 | D110N | Gat | Aat | 1 | 1 | AY.5 | 0.000021 |
ORF1ab/nsp3 | 110 | D110Y | Gat | Tat | 1 | 1 | AY.5.3 | 0.000337 |
ORF1ab/nsp3 | 110 | D110Y | Gat | Tat | 1 | 1 | AY.5.4 | 0.000277 |
ORF1ab/nsp3 | 110 | D110G | gAt | gGt | 1 | 1 | AY.5.4 | 0.000277 |
ORF1ab/nsp3 | 110 | D110Y | Gat | Tat | 1 | 1 | AY.55 | 0.000917 |
ORF1ab/nsp3 | 110 | D110N | Gat | Aat | 1 | 1 | AY.55 | 0.000917 |
ORF1ab/nsp3 | 110 | D110N | Gat | Aat | 1 | 1 | AY.6 | 0.000041 |
ORF1ab/nsp3 | 110 | D110H | Gat | Cat | 1 | 1 | AY.61 | 0.000105 |
ORF1ab/nsp3 | 110 | D110Y | Gat | Tat | 1 | 1 | AY.62 | 0.000436 |
ORF1ab/nsp3 | 110 | D110D | gaT | gaC | 1 | 1 | AY.65 | 0.000533 |
ORF1ab/nsp3 | 110 | D110del | GAT | --- | 1 | 1 | AY.65 | 0.000533 |
ORF1ab/nsp3 | 110 | D110Y | Gat | Tat | 1 | 1 | AY.7.1 | 0.000113 |
ORF1ab/nsp3 | 110 | D110Y | Gat | Tat | 1 | 1 | AY.71 | 0.000475 |
ORF1ab/nsp3 | 110 | D110G | gAt | gGt | 1 | 1 | AY.71 | 0.000475 |
ORF1ab/nsp3 | 110 | D110D | gaT | gaC | 1 | 1 | AY.73 | 0.000665 |
ORF1ab/nsp3 | 110 | D110D | gaT | gaC | 1 | 1 | AY.75 | 0.000056 |
ORF1ab/nsp3 | 110 | D110Y | Gat | Tat | 1 | 1 | AY.75.1 | 0.00018 |
ORF1ab/nsp3 | 110 | D110A | gAt | gCt | 1 | 1 | AY.75.1 | 0.00018 |
ORF1ab/nsp3 | 110 | D110Y | Gat | Tat | 1 | 1 | AY.82 | 0.001357 |
ORF1ab/nsp3 | 110 | D110D | gaT | gaC | 1 | 1 | AY.82 | 0.001357 |
ORF1ab/nsp3 | 110 | D110E | gaT | gaA | 1 | 1 | AY.9 | 0.000068 |
ORF1ab/nsp3 | 110 | D110D | gaT | gaC | 1 | 1 | AY.9 | 0.000068 |
ORF1ab/nsp3 | 110 | D110N | Gat | Aat | 1 | 1 | AY.9.2 | 0.000037 |
ORF1ab/nsp3 | 110 | D110Y | Gat | Tat | 1 | 1 | AY.90 | 0.000684 |
ORF1ab/nsp3 | 110 | D110D | gaT | gaC | 1 | 1 | AY.91 | 0.00073 |
ORF1ab/nsp3 | 110 | D110D | gaT | gaC | 1 | 1 | AY.95 | 0.000761 |
ORF1ab/nsp3 | 110 | D110A | gAt | gCt | 1 | 1 | AY.98 | 0.000079 |
ORF1ab/nsp3 | 110 | D110Y | Gat | Tat | 1 | 1 | AY.98.1 | 0.000048 |
ORF1ab/nsp3 | 110 | D110Y | Gat | Tat | 1 | 1 | AY.99.2 | 0.000092 |
ORF1ab/nsp3 | 110 | D110D | gaT | gaC | 1 | 1 | AY.99.2 | 0.000092 |
ORF1ab/nsp3 | 110 | D110D | gaT | gaC | 1 | 1 | AZ.2 | 0.000821 |
ORF1ab/nsp3 | 110 | D110N | Gat | Aat | 1 | 1 | AZ.2 | 0.000821 |
ORF1ab/nsp3 | 110 | D110Y | Gat | Tat | 1 | 1 | AZ.2 | 0.000821 |
ORF1ab/nsp3 | 110 | D110N | Gat | Aat | 1 | 1 | B | 0.000128 |
ORF1ab/nsp3 | 110 | D110H | Gat | Cat | 1 | 1 | B.1 | 0.000009 |
ORF1ab/nsp3 | 110 | D110del1 | gAt | g-t | 1 | 1 | B.1 | 0.000009 |
ORF1ab/nsp3 | 110 | D110V | gAt | gTt | 1 | 1 | B.1 | 0.000009 |
ORF1ab/nsp3 | 110 | D110N | Gat | Aat | 1 | 1 | B.1.1 | 0.000018 |
ORF1ab/nsp3 | 110 | D110del | GAT | --- | 1 | 1 | B.1.1 | 0.000018 |
ORF1ab/nsp3 | 110 | D110Y | Gat | Tat | 1 | 1 | B.1.1.134 | 0.011364 |
ORF1ab/nsp3 | 110 | D110D | gaT | gaC | 1 | 1 | B.1.1.176 | 0.000439 |
ORF1ab/nsp3 | 110 | D110Y | Gat | Tat | 1 | 1 | B.1.1.214 | 0.000055 |
ORF1ab/nsp3 | 110 | D110E | gaT | gaG | 1 | 1 | B.1.1.216 | 0.00089 |
ORF1ab/nsp3 | 110 | D110E | gaT | gaA | 1 | 1 | B.1.1.221 | 0.010101 |
ORF1ab/nsp3 | 110 | D110A | gAt | gCt | 1 | 1 | B.1.1.230 | 0.009174 |
ORF1ab/nsp3 | 110 | D110Y | Gat | Tat | 1 | 1 | B.1.1.25 | 0.000569 |
ORF1ab/nsp3 | 110 | D110Y | Gat | Tat | 1 | 1 | B.1.1.28 | 0.000311 |
ORF1ab/nsp3 | 110 | D110G | gAt | gGt | 1 | 1 | B.1.1.306 | 0.000438 |
ORF1ab/nsp3 | 110 | D110D | gaT | gaC | 1 | 1 | B.1.1.316 | 0.000925 |
ORF1ab/nsp3 | 110 | D110N | Gat | Aat | 1 | 1 | B.1.1.317 | 0.000412 |
ORF1ab/nsp3 | 110 | D110Y | Gat | Tat | 1 | 1 | B.1.1.317 | 0.000412 |
ORF1ab/nsp3 | 110 | D110Y | Gat | Tat | 1 | 1 | B.1.1.318 | 0.000302 |
ORF1ab/nsp3 | 110 | D110V | gAt | gTt | 1 | 1 | B.1.1.33 | 0.000421 |
ORF1ab/nsp3 | 110 | D110G | gAt | gGt | 1 | 1 | B.1.1.33 | 0.000421 |
ORF1ab/nsp3 | 110 | D110Y | Gat | Tat | 1 | 1 | B.1.1.33 | 0.000421 |
ORF1ab/nsp3 | 110 | D110del | GAT | --- | 1 | 1 | B.1.1.369 | 0.000446 |
ORF1ab/nsp3 | 110 | D110V | gAt | gTt | 1 | 1 | B.1.1.39 | 0.00051 |
ORF1ab/nsp3 | 110 | D110E | gaT | gaA | 1 | 1 | B.1.1.39 | 0.00051 |
ORF1ab/nsp3 | 110 | D110D | gaT | gaC | 1 | 1 | B.1.1.41 | 0.006329 |
ORF1ab/nsp3 | 110 | D110Y | Gat | Tat | 1 | 1 | B.1.1.432 | 0.001266 |
ORF1ab/nsp3 | 110 | D110G | gAt | gGt | 1 | 1 | B.1.1.434 | 0.000349 |
ORF1ab/nsp3 | 110 | D110D | gaT | gaC | 1 | 1 | B.1.1.434 | 0.000349 |
ORF1ab/nsp3 | 110 | D110Y | Gat | Tat | 1 | 1 | B.1.1.466 | 0.008696 |
ORF1ab/nsp3 | 110 | D110G | gAt | gGt | 1 | 1 | B.1.1.519 | 0.00004 |
ORF1ab/nsp3 | 110 | D110D | gaT | gaC | 1 | 1 | B.1.1.528 | 0.004808 |
ORF1ab/nsp3 | 110 | D110H | Gat | Cat | 1 | 1 | B.1.1.7 | 0.000001 |
ORF1ab/nsp3 | 110 | D110del2 | gAT | g-- | 1 | 1 | B.1.1.7 | 0.000001 |
ORF1ab/nsp3 | 110 | D110del1 | Gat | -at | 1 | 1 | B.1.1.7 | 0.000001 |
ORF1ab/nsp3 | 110 | D110G | gAt | gGt | 1 | 1 | B.1.1.70 | 0.000341 |
ORF1ab/nsp3 | 110 | D110Y | Gat | Tat | 1 | 1 | B.1.111 | 0.001175 |
ORF1ab/nsp3 | 110 | D110D | gaT | gaC | 1 | 1 | B.1.126 | 0.001276 |
ORF1ab/nsp3 | 110 | D110D | gaT | gaC | 1 | 1 | B.1.13 | 0.002375 |
ORF1ab/nsp3 | 110 | D110V | gAt | gTt | 1 | 1 | B.1.160 | 0.000031 |
ORF1ab/nsp3 | 110 | D110H | Gat | Cat | 1 | 1 | B.1.160 | 0.000031 |
ORF1ab/nsp3 | 110 | D110D | gaT | gaC | 1 | 1 | B.1.160.32 | 0.004292 |
ORF1ab/nsp3 | 110 | D110A | gAt | gCt | 1 | 1 | B.1.177 | 0.000013 |
ORF1ab/nsp3 | 110 | D110del | GAT | --- | 1 | 1 | B.1.177 | 0.000013 |
ORF1ab/nsp3 | 110 | D110N | Gat | Aat | 1 | 1 | B.1.177 | 0.000013 |
ORF1ab/nsp3 | 110 | D110D | gaT | gaC | 1 | 1 | B.1.177.11 | 0.001698 |
ORF1ab/nsp3 | 110 | D110D | gaT | gaC | 1 | 1 | B.1.177.16 | 0.000664 |
ORF1ab/nsp3 | 110 | D110D | gaT | gaC | 1 | 1 | B.1.177.21 | 0.000076 |
ORF1ab/nsp3 | 110 | D110Y | Gat | Tat | 1 | 1 | B.1.177.44 | 0.000519 |
ORF1ab/nsp3 | 110 | D110D | gaT | gaC | 1 | 1 | B.1.177.46 | 0.000918 |
ORF1ab/nsp3 | 110 | D110D | gaT | gaC | 1 | 1 | B.1.177.50 | 0.004695 |
ORF1ab/nsp3 | 110 | D110D | gaT | gaC | 1 | 1 | B.1.177.6 | 0.000977 |
ORF1ab/nsp3 | 110 | D110H | Gat | Cat | 1 | 1 | B.1.177.60 | 0.000218 |
ORF1ab/nsp3 | 110 | D110Y | Gat | Tat | 1 | 1 | B.1.177.60 | 0.000218 |
ORF1ab/nsp3 | 110 | D110V | gAt | gTt | 1 | 1 | B.1.2 | 0.000009 |
ORF1ab/nsp3 | 110 | D110S | GAt | AGt | 1 | 1 | B.1.2 | 0.000009 |
ORF1ab/nsp3 | 110 | D110A | gAt | gCt | 1 | 1 | B.1.2 | 0.000009 |
ORF1ab/nsp3 | 110 | D110del1 | Gat | -at | 1 | 1 | B.1.2 | 0.000009 |
ORF1ab/nsp3 | 110 | D110Y | Gat | Tat | 1 | 1 | B.1.214.2 | 0.0006 |
ORF1ab/nsp3 | 110 | D110N | Gat | Aat | 1 | 1 | B.1.221 | 0.000071 |
ORF1ab/nsp3 | 110 | D110Y | Gat | Tat | 1 | 1 | B.1.240 | 0.000216 |
ORF1ab/nsp3 | 110 | D110V | gAt | gTt | 1 | 1 | B.1.240 | 0.000216 |
ORF1ab/nsp3 | 110 | D110D | gaT | gaC | 1 | 1 | B.1.243 | 0.00007 |
ORF1ab/nsp3 | 110 | D110N | Gat | Aat | 1 | 1 | B.1.258 | 0.000067 |
ORF1ab/nsp3 | 110 | D110D | gaT | gaC | 1 | 1 | B.1.258 | 0.000067 |
ORF1ab/nsp3 | 110 | D110D | gaT | gaC | 1 | 1 | B.1.258.17 | 0.000104 |
ORF1ab/nsp3 | 110 | D110E | gaT | gaG | 1 | 1 | B.1.258.17 | 0.000104 |
ORF1ab/nsp3 | 110 | D110D | gaT | gaC | 1 | 1 | B.1.258.7 | 0.001912 |
ORF1ab/nsp3 | 110 | D110A | gAt | gCt | 1 | 1 | B.1.265 | 0.001271 |
ORF1ab/nsp3 | 110 | D110N | Gat | Aat | 1 | 1 | B.1.289 | 0.00266 |
ORF1ab/nsp3 | 110 | D110Y | Gat | Tat | 1 | 1 | B.1.291 | 0.019231 |
ORF1ab/nsp3 | 110 | D110Y | Gat | Tat | 1 | 1 | B.1.311 | 0.000275 |
ORF1ab/nsp3 | 110 | D110D | gaT | gaC | 1 | 1 | B.1.324 | 0.001605 |
ORF1ab/nsp3 | 110 | D110del | GAT | --- | 1 | 1 | B.1.349 | 0.000715 |
ORF1ab/nsp3 | 110 | D110N | Gat | Aat | 1 | 1 | B.1.351 | 0.00003 |
ORF1ab/nsp3 | 110 | D110G | gAt | gGt | 1 | 1 | B.1.351.2 | 0.000303 |
ORF1ab/nsp3 | 110 | D110Y | Gat | Tat | 1 | 1 | B.1.351.3 | 0.000876 |
ORF1ab/nsp3 | 110 | D110G | gAt | gGt | 1 | 1 | B.1.36 | 0.000146 |
ORF1ab/nsp3 | 110 | D110D | gaT | gaC | 1 | 1 | B.1.36.35 | 0.002604 |
ORF1ab/nsp3 | 110 | D110E | gaT | gaG | 1 | 1 | B.1.36.38 | 0.001642 |
ORF1ab/nsp3 | 110 | D110E | gaT | gaG | 1 | 1 | B.1.361 | 0.001289 |
ORF1ab/nsp3 | 110 | D110del | GAT | --- | 1 | 1 | B.1.416.1 | 0.001563 |
ORF1ab/nsp3 | 110 | D110E | gaT | gaG | 1 | 1 | B.1.427 | 0.00005 |
ORF1ab/nsp3 | 110 | D110del | GAT | --- | 1 | 1 | B.1.429 | 0.000024 |
ORF1ab/nsp3 | 110 | D110E | gaT | gaG | 1 | 1 | B.1.429 | 0.000024 |
ORF1ab/nsp3 | 110 | D110D | gaT | gaC | 1 | 1 | B.1.429.1 | 0.012048 |
ORF1ab/nsp3 | 110 | D110Y | Gat | Tat | 1 | 1 | B.1.438.1 | 0.000107 |
ORF1ab/nsp3 | 110 | D110Y | Gat | Tat | 1 | 1 | B.1.462 | 0.007246 |
ORF1ab/nsp3 | 110 | D110D | gaT | gaC | 1 | 1 | B.1.466.2 | 0.000391 |
ORF1ab/nsp3 | 110 | D110Y | Gat | Tat | 1 | 1 | B.1.466.2 | 0.000391 |
ORF1ab/nsp3 | 110 | D110G | gAt | gGt | 1 | 1 | B.1.466.2 | 0.000391 |
ORF1ab/nsp3 | 110 | D110N | Gat | Aat | 1 | 1 | B.1.470 | 0.001404 |
ORF1ab/nsp3 | 110 | D110Y | Gat | Tat | 1 | 1 | B.1.503 | 0.002488 |
ORF1ab/nsp3 | 110 | D110del | GAT | --- | 1 | 1 | B.1.525 | 0.000113 |
ORF1ab/nsp3 | 110 | D110D | gaT | gaC | 1 | 1 | B.1.525 | 0.000113 |
ORF1ab/nsp3 | 110 | D110G | gAt | gGt | 1 | 1 | B.1.530 | 0.007143 |
ORF1ab/nsp3 | 110 | D110G | gAt | gGt | 1 | 1 | B.1.561 | 0.000397 |
ORF1ab/nsp3 | 110 | D110del | GAT | --- | 1 | 1 | B.1.561 | 0.000397 |
ORF1ab/nsp3 | 110 | D110E | gaT | gaG | 1 | 1 | B.1.561 | 0.000397 |
ORF1ab/nsp3 | 110 | D110Y | Gat | Tat | 1 | 1 | B.1.561 | 0.000397 |
ORF1ab/nsp3 | 110 | D110Y | Gat | Tat | 1 | 1 | B.1.563 | 0.016949 |
ORF1ab/nsp3 | 110 | D110Y | Gat | Tat | 1 | 1 | B.1.575 | 0.000303 |
ORF1ab/nsp3 | 110 | D110del | GAT | --- | 1 | 1 | B.1.577 | 0.000687 |
ORF1ab/nsp3 | 110 | D110H | Gat | Cat | 1 | 1 | B.1.596 | 0.000087 |
ORF1ab/nsp3 | 110 | D110V | gAt | gTt | 1 | 1 | B.1.617.1 | 0.000129 |
ORF1ab/nsp3 | 110 | D110del | GAT | --- | 1 | 1 | B.1.617.2 | 0.000004 |
ORF1ab/nsp3 | 110 | D110H | Gat | Cat | 1 | 1 | B.1.617.2 | 0.000004 |
ORF1ab/nsp3 | 110 | D110G | gAt | gGt | 1 | 1 | B.1.619.1 | 0.000641 |
ORF1ab/nsp3 | 110 | D110G | gAt | gGt | 1 | 1 | B.1.623 | 0.000536 |
ORF1ab/nsp3 | 110 | D110Y | Gat | Tat | 1 | 1 | B.1.626 | 0.005714 |
ORF1ab/nsp3 | 110 | D110N | Gat | Aat | 1 | 1 | B.1.637 | 0.000073 |
ORF1ab/nsp3 | 110 | D110G | gAt | gGt | 1 | 1 | B.1.637 | 0.000073 |
ORF1ab/nsp3 | 110 | D110Y | Gat | Tat | 1 | 1 | B.1.9.4 | 0.006135 |
ORF1ab/nsp3 | 110 | D110D | gaT | gaC | 1 | 1 | B.31 | 0.003731 |
ORF1ab/nsp3 | 110 | D110Y | Gat | Tat | 1 | 1 | C.16 | 0.00106 |
ORF1ab/nsp3 | 110 | D110G | gAt | gGt | 1 | 1 | C.26 | 0.007353 |
ORF1ab/nsp3 | 110 | D110N | Gat | Aat | 1 | 1 | C.35 | 0.000774 |
ORF1ab/nsp3 | 110 | D110E | gaT | gaG | 1 | 1 | C.35 | 0.000774 |
ORF1ab/nsp3 | 110 | D110A | gAt | gCt | 1 | 1 | C.36 | 0.000911 |
ORF1ab/nsp3 | 110 | D110D | gaT | gaC | 1 | 1 | C.36.3.1 | 0.002717 |
ORF1ab/nsp3 | 110 | D110G | gAt | gGt | 1 | 1 | C.37 | 0.000116 |
ORF1ab/nsp3 | 110 | D110N | Gat | Aat | 1 | 1 | C.37 | 0.000116 |
ORF1ab/nsp3 | 110 | D110V | gAt | gTt | 1 | 1 | D.3 | 0.005917 |
ORF1ab/nsp3 | 110 | D110del | GAT | --- | 1 | 1 | P.1 | 0.000016 |
ORF1ab/nsp3 | 110 | D110E | gaT | gaG | 1 | 1 | P.1 | 0.000016 |
ORF1ab/nsp3 | 110 | D110Y | Gat | Tat | 1 | 1 | P.1.1 | 0.000318 |
ORF1ab/nsp3 | 110 | D110Y | Gat | Tat | 1 | 1 | P.1.12 | 0.000484 |
ORF1ab/nsp3 | 110 | D110Y | Gat | Tat | 1 | 1 | P.1.2 | 0.001156 |
ORF1ab/nsp3 | 110 | D110Y | Gat | Tat | 1 | 1 | P.2 | 0.000187 |
ORF1ab/nsp3 | 110 | D110D | gaT | gaC | 1 | 1 | P.2 | 0.000187 |
ORF1ab/nsp3 | 110 | D110Y | Gat | Tat | 1 | 1 | P.3 | 0.001595 |
ORF1ab/nsp3 | 110 | D110Y | Gat | Tat | 1 | 1 | Q.2 | 0.000613 |
ORF1ab/nsp3 | 110 | D110Y | Gat | Tat | 1 | 1 | Q.7 | 0.001111 |
ORF1ab/nsp3 | 110 | D110A | gAt | gCt | 1 | 1 | R.1 | 0.00009 |
ORF1ab/nsp3 | 110 | D110del1 | Gat | -at | 1 | 1 | R.1 | 0.00009 |
ORF1ab/nsp3 | 110 | D110A | gAt | gCt | 1 | 1 | W.3 | 0.005263 |
CoV-GLUE is still in development. CoV-GLUE was originally developed as part of COG-UK by Josh Singer using the GLUE framework at the MRC-University of Glasgow Centre for Virus Research (CVR). In 2021 it was redeveloped by Richard Orton to scale to the millions of genome sequences available. We acknowledge support from the MRC (MC_UU_12014/12), WT (220977/Z/20/Z) and UKRI G2P (MR/W005611/1). Please contact Richard Orton with any queries: Richard.Orton@glasgow.ac.uk
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