CoV-GLUE | Mutations | Mutation
Details of the codons used for the mutation across all lineages (CodonProp is the proportion each codon is used for this AA mutation):
ORF | CodonNum | Mut | ORF1abMut | MutType | RefCodon | MutCodon | AACount | CodonCount | CodonProp | Genome Position |
ORF1ab/nsp3 | 109 | P109L | P927L | nonsyn | cCa | cTa | 8035 | 8033 | 0.999751 | 3044-3046 |
ORF1ab/nsp3 | 109 | P109L | P927L | nonsyn | CCa | TTa | 8035 | 2 | 0.000248911 | 3044-3046 |
ORF1ab/nsp3 | 109 | P109P | P927P | syn | ccA | ccG | 1531 | 1012 | 0.661006 | 3044-3046 |
ORF1ab/nsp3 | 109 | P109P | P927P | syn | ccA | ccT | 1531 | 376 | 0.245591 | 3044-3046 |
ORF1ab/nsp3 | 109 | P109P | P927P | syn | ccA | ccC | 1531 | 143 | 0.093403 | 3044-3046 |
ORF1ab/nsp3 | 109 | P109S | P927S | nonsyn | Cca | Tca | 554 | 551 | 0.994585 | 3044-3046 |
ORF1ab/nsp3 | 109 | P109S | P927S | nonsyn | CcA | TcT | 554 | 2 | 0.00361011 | 3044-3046 |
ORF1ab/nsp3 | 109 | P109S | P927S | nonsyn | CcA | TcC | 554 | 1 | 0.00180505 | 3044-3046 |
ORF1ab/nsp3 | 109 | P109A | P927A | nonsyn | Cca | Gca | 95 | 95 | 1 | 3044-3046 |
ORF1ab/nsp3 | 109 | P109T | P927T | nonsyn | Cca | Aca | 45 | 45 | 1 | 3044-3046 |
ORF1ab/nsp3 | 109 | P109del | P927del | del | CCA | --- | 43 | 43 | 1 | 3044-3046 |
ORF1ab/nsp3 | 109 | P109Q | P927Q | nonsyn | cCa | cAa | 40 | 37 | 0.925 | 3044-3046 |
ORF1ab/nsp3 | 109 | P109Q | P927Q | nonsyn | cCA | cAG | 40 | 3 | 0.075 | 3044-3046 |
ORF1ab/nsp3 | 109 | P109del1 | P927del1 | del | Cca | -ca | 29 | 24 | 0.827586 | 3044-3046 |
ORF1ab/nsp3 | 109 | P109del1 | P927del1 | del | ccA | cc- | 29 | 5 | 0.172414 | 3044-3046 |
ORF1ab/nsp3 | 109 | P109R | P927R | nonsyn | cCa | cGa | 22 | 22 | 1 | 3044-3046 |
ORF1ab/nsp3 | 109 | P109X | P927X | nonsyn | CCa | TAa | 2 | 2 | 1 | 3044-3046 |
ORF1ab/nsp3 | 109 | P109del2 | P927del2 | del | cCA | c-- | 2 | 1 | 0.5 | 3044-3046 |
ORF1ab/nsp3 | 109 | P109del2 | P927del2 | del | CCA | --N | 2 | 1 | 0.5 | 3044-3046 |
ORF1ab/nsp3 | 109 | P109F | P927F | nonsyn | CCA | TTT | 1 | 1 | 1 | 3044-3046 |
ORF1ab/nsp3 | 109 | P109Y | P927Y | nonsyn | CCA | TAT | 1 | 1 | 1 | 3044-3046 |
ORF1ab/nsp3 | 109 | P109V | P927V | nonsyn | CCA | GTT | 1 | 1 | 1 | 3044-3046 |
ORF1ab/nsp3 | 109 | P109C | P927C | nonsyn | CCA | TGT | 1 | 1 | 1 | 3044-3046 |
Details of the mutation no within lineages (LineageCodonProp is the proportion the codon is observed at, at this particular site, on each lineage):
ORF | CodonNum | Mut | RefCodon | MutCodon | CodonCount | AACount | Lineage | LineageCodonProp |
ORF1ab/nsp3 | 109 | P109L | cCa | cTa | 8033 | 8035 | All | 0.001536 |
ORF1ab/nsp3 | 109 | P109L | CCa | TTa | 2 | 8035 | All | 0 |
ORF1ab/nsp3 | 109 | P109P | ccA | ccG | 1012 | 1531 | All | 0.000194 |
ORF1ab/nsp3 | 109 | P109P | ccA | ccT | 376 | 1531 | All | 0.000072 |
ORF1ab/nsp3 | 109 | P109P | ccA | ccC | 143 | 1531 | All | 0.000027 |
ORF1ab/nsp3 | 109 | P109L | cCa | cTa | 1517 | 1517 | B.1.1.7 | 0.001358 |
ORF1ab/nsp3 | 109 | P109L | cCa | cTa | 899 | 899 | B.1.617.2 | 0.003385 |
ORF1ab/nsp3 | 109 | P109L | cCa | cTa | 789 | 789 | AY.25 | 0.004746 |
ORF1ab/nsp3 | 109 | P109S | Cca | Tca | 551 | 554 | All | 0.000105 |
ORF1ab/nsp3 | 109 | P109S | CcA | TcT | 2 | 554 | All | 0 |
ORF1ab/nsp3 | 109 | P109S | CcA | TcC | 1 | 554 | All | 0 |
ORF1ab/nsp3 | 109 | P109P | ccA | ccG | 525 | 528 | AY.103 | 0.00326 |
ORF1ab/nsp3 | 109 | P109P | ccA | ccT | 2 | 528 | AY.103 | 0.000012 |
ORF1ab/nsp3 | 109 | P109P | ccA | ccC | 1 | 528 | AY.103 | 0.000006 |
ORF1ab/nsp3 | 109 | P109L | cCa | cTa | 419 | 419 | AY.4 | 0.000652 |
ORF1ab/nsp3 | 109 | P109L | cCa | cTa | 298 | 298 | B.1.577 | 0.204811 |
ORF1ab/nsp3 | 109 | P109L | cCa | cTa | 284 | 284 | AY.103 | 0.001763 |
ORF1ab/nsp3 | 109 | P109L | cCa | cTa | 282 | 282 | AY.43 | 0.001249 |
ORF1ab/nsp3 | 109 | P109L | cCa | cTa | 264 | 264 | AY.44 | 0.001607 |
ORF1ab/nsp3 | 109 | P109L | cCa | cTa | 174 | 174 | AY.3 | 0.001731 |
ORF1ab/nsp3 | 109 | P109P | ccA | ccT | 126 | 167 | B.1.1.7 | 0.000113 |
ORF1ab/nsp3 | 109 | P109P | ccA | ccG | 41 | 167 | B.1.1.7 | 0.000037 |
ORF1ab/nsp3 | 109 | P109L | cCa | cTa | 165 | 165 | AY.9.2 | 0.00606 |
ORF1ab/nsp3 | 109 | P109L | cCa | cTa | 158 | 158 | AY.39 | 0.003904 |
ORF1ab/nsp3 | 109 | P109L | cCa | cTa | 134 | 134 | B.1.177 | 0.001764 |
ORF1ab/nsp3 | 109 | P109L | cCa | cTa | 124 | 124 | AY.109 | 0.091716 |
ORF1ab/nsp3 | 109 | P109P | ccA | ccG | 104 | 121 | B.1.617.2 | 0.000392 |
ORF1ab/nsp3 | 109 | P109P | ccA | ccT | 10 | 121 | B.1.617.2 | 0.000038 |
ORF1ab/nsp3 | 109 | P109P | ccA | ccC | 7 | 121 | B.1.617.2 | 0.000026 |
ORF1ab/nsp3 | 109 | P109S | Cca | Tca | 112 | 112 | B.1.1.7 | 0.0001 |
ORF1ab/nsp3 | 109 | P109L | cCa | cTa | 112 | 112 | P.1 | 0.001764 |
ORF1ab/nsp3 | 109 | P109L | cCa | cTa | 109 | 109 | AY.102 | 0.00289 |
ORF1ab/nsp3 | 109 | P109S | Cca | Tca | 107 | 107 | AY.103 | 0.000664 |
ORF1ab/nsp3 | 109 | P109L | cCa | cTa | 107 | 107 | B.1.2 | 0.000942 |
ORF1ab/nsp3 | 109 | P109L | cCa | cTa | 104 | 104 | B.1 | 0.000953 |
ORF1ab/nsp3 | 109 | P109L | cCa | cTa | 101 | 101 | B.1.1 | 0.001832 |
ORF1ab/nsp3 | 109 | P109P | ccA | ccC | 99 | 99 | AY.109 | 0.073225 |
ORF1ab/nsp3 | 109 | P109L | cCa | cTa | 97 | 97 | AY.88 | 0.085765 |
ORF1ab/nsp3 | 109 | P109A | Cca | Gca | 95 | 95 | All | 0.000018 |
ORF1ab/nsp3 | 109 | P109P | ccA | ccT | 76 | 91 | AY.43 | 0.000337 |
ORF1ab/nsp3 | 109 | P109P | ccA | ccG | 15 | 91 | AY.43 | 0.000066 |
ORF1ab/nsp3 | 109 | P109L | cCa | cTa | 87 | 87 | AY.26 | 0.002463 |
ORF1ab/nsp3 | 109 | P109L | cCa | cTa | 78 | 78 | AY.5.1 | 0.293233 |
ORF1ab/nsp3 | 109 | P109L | cCa | cTa | 70 | 70 | AY.61 | 0.007334 |
ORF1ab/nsp3 | 109 | P109L | cCa | cTa | 66 | 66 | B.1.526 | 0.001551 |
ORF1ab/nsp3 | 109 | P109P | ccA | ccT | 30 | 52 | AY.4 | 0.000047 |
ORF1ab/nsp3 | 109 | P109P | ccA | ccG | 17 | 52 | AY.4 | 0.000026 |
ORF1ab/nsp3 | 109 | P109P | ccA | ccC | 5 | 52 | AY.4 | 0.000008 |
ORF1ab/nsp3 | 109 | P109L | cCa | cTa | 49 | 49 | B.1.177.63 | 0.132432 |
ORF1ab/nsp3 | 109 | P109L | cCa | cTa | 47 | 47 | B.1.621 | 0.00416 |
ORF1ab/nsp3 | 109 | P109L | cCa | cTa | 46 | 46 | AY.20 | 0.001788 |
ORF1ab/nsp3 | 109 | P109L | cCa | cTa | 46 | 46 | B.1.284 | 0.605263 |
ORF1ab/nsp3 | 109 | P109T | Cca | Aca | 45 | 45 | All | 0.000009 |
ORF1ab/nsp3 | 109 | P109L | cCa | cTa | 45 | 45 | AY.5 | 0.000929 |
ORF1ab/nsp3 | 109 | P109L | cCa | cTa | 44 | 44 | AY.4.2 | 0.000954 |
ORF1ab/nsp3 | 109 | P109del | CCA | --- | 43 | 43 | All | 0.000008 |
ORF1ab/nsp3 | 109 | P109L | cCa | cTa | 41 | 41 | R.1 | 0.00369 |
ORF1ab/nsp3 | 109 | P109Q | cCa | cAa | 37 | 40 | All | 0.000007 |
ORF1ab/nsp3 | 109 | P109Q | cCA | cAG | 3 | 40 | All | 0.000001 |
ORF1ab/nsp3 | 109 | P109A | Cca | Gca | 40 | 40 | AY.4 | 0.000062 |
ORF1ab/nsp3 | 109 | P109L | cCa | cTa | 39 | 39 | AY.116.1 | 0.012146 |
ORF1ab/nsp3 | 109 | P109L | cCa | cTa | 38 | 38 | B.1.234 | 0.005014 |
ORF1ab/nsp3 | 109 | P109P | ccA | ccG | 28 | 37 | P.1 | 0.000441 |
ORF1ab/nsp3 | 109 | P109P | ccA | ccT | 7 | 37 | P.1 | 0.00011 |
ORF1ab/nsp3 | 109 | P109P | ccA | ccC | 2 | 37 | P.1 | 0.000032 |
ORF1ab/nsp3 | 109 | P109P | ccA | ccT | 15 | 35 | AY.25 | 0.00009 |
ORF1ab/nsp3 | 109 | P109P | ccA | ccG | 15 | 35 | AY.25 | 0.00009 |
ORF1ab/nsp3 | 109 | P109P | ccA | ccC | 5 | 35 | AY.25 | 0.00003 |
ORF1ab/nsp3 | 109 | P109S | Cca | Tca | 34 | 34 | AY.4 | 0.000053 |
ORF1ab/nsp3 | 109 | P109L | cCa | cTa | 32 | 32 | AY.47 | 0.000995 |
ORF1ab/nsp3 | 109 | P109A | Cca | Gca | 32 | 32 | B.1.177 | 0.000421 |
ORF1ab/nsp3 | 109 | P109L | cCa | cTa | 31 | 31 | B.1.438.1 | 0.003325 |
ORF1ab/nsp3 | 109 | P109L | cCa | cTa | 30 | 30 | B.1.160 | 0.000936 |
ORF1ab/nsp3 | 109 | P109L | cCa | cTa | 30 | 30 | B.1.429 | 0.000706 |
ORF1ab/nsp3 | 109 | P109S | Cca | Tca | 30 | 30 | B.1.617.2 | 0.000113 |
ORF1ab/nsp3 | 109 | P109del1 | Cca | -ca | 24 | 29 | All | 0.000005 |
ORF1ab/nsp3 | 109 | P109del1 | ccA | cc- | 5 | 29 | All | 0.000001 |
ORF1ab/nsp3 | 109 | P109L | cCa | cTa | 29 | 29 | AY.42 | 0.001167 |
ORF1ab/nsp3 | 109 | P109L | cCa | cTa | 29 | 29 | B.1.1.214 | 0.001608 |
ORF1ab/nsp3 | 109 | P109P | ccA | ccG | 29 | 29 | B.1.1.48 | 0.083333 |
ORF1ab/nsp3 | 109 | P109L | cCa | cTa | 28 | 28 | AY.75 | 0.001569 |
ORF1ab/nsp3 | 109 | P109L | cCa | cTa | 25 | 25 | B.1.1.519 | 0.000993 |
ORF1ab/nsp3 | 109 | P109P | ccA | ccT | 25 | 25 | P.1.17 | 0.004044 |
ORF1ab/nsp3 | 109 | P109S | Cca | Tca | 23 | 23 | AY.3 | 0.000229 |
ORF1ab/nsp3 | 109 | P109P | ccA | ccG | 12 | 23 | AY.44 | 0.000073 |
ORF1ab/nsp3 | 109 | P109P | ccA | ccT | 8 | 23 | AY.44 | 0.000049 |
ORF1ab/nsp3 | 109 | P109P | ccA | ccC | 3 | 23 | AY.44 | 0.000018 |
ORF1ab/nsp3 | 109 | P109S | Cca | Tca | 23 | 23 | AY.5 | 0.000475 |
ORF1ab/nsp3 | 109 | P109P | ccA | ccG | 23 | 23 | B.1.177.82 | 0.010979 |
ORF1ab/nsp3 | 109 | P109L | cCa | cTa | 23 | 23 | B.1.36.22 | 0.027778 |
ORF1ab/nsp3 | 109 | P109R | cCa | cGa | 22 | 22 | All | 0.000004 |
ORF1ab/nsp3 | 109 | P109L | cCa | cTa | 22 | 22 | AY.119 | 0.000777 |
ORF1ab/nsp3 | 109 | P109L | cCa | cTa | 20 | 20 | AE.4 | 0.869565 |
ORF1ab/nsp3 | 109 | P109L | cCa | cTa | 20 | 20 | AY.46.6 | 0.001444 |
ORF1ab/nsp3 | 109 | P109S | Cca | Tca | 19 | 19 | AY.118 | 0.00119 |
ORF1ab/nsp3 | 109 | P109P | ccA | ccG | 19 | 19 | B.1.497 | 0.00598 |
ORF1ab/nsp3 | 109 | P109R | cCa | cGa | 18 | 18 | AY.4 | 0.000028 |
ORF1ab/nsp3 | 109 | P109L | cCa | cTa | 18 | 18 | B.1.1.318 | 0.005432 |
ORF1ab/nsp3 | 109 | P109P | ccA | ccT | 15 | 17 | AY.102 | 0.000398 |
ORF1ab/nsp3 | 109 | P109P | ccA | ccG | 2 | 17 | AY.102 | 0.000053 |
ORF1ab/nsp3 | 109 | P109P | ccA | ccG | 17 | 17 | B.1.214.3 | 0.121429 |
ORF1ab/nsp3 | 109 | P109L | cCa | cTa | 17 | 17 | P.1.14 | 0.000813 |
ORF1ab/nsp3 | 109 | P109L | cCa | cTa | 15 | 15 | AY.117 | 0.001268 |
ORF1ab/nsp3 | 109 | P109L | cCa | cTa | 15 | 15 | AY.29 | 0.000237 |
ORF1ab/nsp3 | 109 | P109L | cCa | cTa | 15 | 15 | AY.98 | 0.001185 |
ORF1ab/nsp3 | 109 | P109L | cCa | cTa | 15 | 15 | AY.99.2 | 0.001382 |
ORF1ab/nsp3 | 109 | P109L | cCa | cTa | 15 | 15 | B.1.177.44 | 0.007784 |
ORF1ab/nsp3 | 109 | P109L | cCa | cTa | 14 | 14 | AY.100 | 0.000644 |
ORF1ab/nsp3 | 109 | P109L | cCa | cTa | 14 | 14 | AY.113 | 0.001993 |
ORF1ab/nsp3 | 109 | P109L | cCa | cTa | 14 | 14 | AY.120 | 0.000521 |
ORF1ab/nsp3 | 109 | P109P | ccA | ccG | 9 | 14 | AY.3 | 0.00009 |
ORF1ab/nsp3 | 109 | P109P | ccA | ccC | 3 | 14 | AY.3 | 0.00003 |
ORF1ab/nsp3 | 109 | P109P | ccA | ccT | 2 | 14 | AY.3 | 0.00002 |
ORF1ab/nsp3 | 109 | P109L | cCa | cTa | 14 | 14 | B.1.177.69 | 0.020772 |
ORF1ab/nsp3 | 109 | P109L | cCa | cTa | 14 | 14 | B.1.221 | 0.000994 |
ORF1ab/nsp3 | 109 | P109L | cCa | cTa | 14 | 14 | B.1.243 | 0.000974 |
ORF1ab/nsp3 | 109 | P109P | ccA | ccG | 13 | 14 | B.1.621 | 0.001151 |
ORF1ab/nsp3 | 109 | P109P | ccA | ccC | 1 | 14 | B.1.621 | 0.000089 |
ORF1ab/nsp3 | 109 | P109P | ccA | ccG | 13 | 13 | A.1 | 0.003664 |
ORF1ab/nsp3 | 109 | P109L | cCa | cTa | 13 | 13 | AY.46 | 0.001353 |
ORF1ab/nsp3 | 109 | P109L | cCa | cTa | 13 | 13 | AY.92 | 0.003735 |
ORF1ab/nsp3 | 109 | P109T | Cca | Aca | 13 | 13 | B.1.1.7 | 0.000012 |
ORF1ab/nsp3 | 109 | P109L | cCa | cTa | 12 | 12 | AY.39.1 | 0.000475 |
ORF1ab/nsp3 | 109 | P109Q | cCa | cAa | 12 | 12 | B.1.1.7 | 0.000011 |
ORF1ab/nsp3 | 109 | P109S | Cca | Tca | 11 | 11 | AY.100 | 0.000506 |
ORF1ab/nsp3 | 109 | P109S | Cca | Tca | 11 | 11 | AY.111 | 0.002015 |
ORF1ab/nsp3 | 109 | P109L | cCa | cTa | 11 | 11 | AY.30 | 0.004353 |
ORF1ab/nsp3 | 109 | P109S | Cca | Tca | 11 | 11 | AY.44 | 0.000067 |
ORF1ab/nsp3 | 109 | P109P | ccA | ccT | 6 | 11 | B.1 | 0.000055 |
ORF1ab/nsp3 | 109 | P109P | ccA | ccG | 4 | 11 | B.1 | 0.000037 |
ORF1ab/nsp3 | 109 | P109P | ccA | ccC | 1 | 11 | B.1 | 0.000009 |
ORF1ab/nsp3 | 109 | P109L | cCa | cTa | 11 | 11 | B.1.1.348 | 0.008758 |
ORF1ab/nsp3 | 109 | P109L | cCa | cTa | 11 | 11 | B.1.1.397 | 0.024775 |
ORF1ab/nsp3 | 109 | P109L | cCa | cTa | 11 | 11 | B.1.177.60 | 0.002403 |
ORF1ab/nsp3 | 109 | P109L | cCa | cTa | 11 | 11 | B.1.517 | 0.004697 |
ORF1ab/nsp3 | 109 | P109L | cCa | cTa | 10 | 10 | AY.37 | 0.003161 |
ORF1ab/nsp3 | 109 | P109P | ccA | ccG | 9 | 10 | AY.4.2 | 0.000195 |
ORF1ab/nsp3 | 109 | P109P | ccA | ccC | 1 | 10 | AY.4.2 | 0.000022 |
ORF1ab/nsp3 | 109 | P109P | ccA | ccG | 10 | 10 | AY.46.6 | 0.000722 |
ORF1ab/nsp3 | 109 | P109P | ccA | ccT | 10 | 10 | AY.72 | 0.013605 |
ORF1ab/nsp3 | 109 | P109L | cCa | cTa | 10 | 10 | AY.75.1 | 0.001803 |
ORF1ab/nsp3 | 109 | P109P | ccA | ccG | 10 | 10 | B.1.2 | 0.000088 |
ORF1ab/nsp3 | 109 | P109L | cCa | cTa | 10 | 10 | B.1.311 | 0.002746 |
ORF1ab/nsp3 | 109 | P109P | ccA | ccG | 10 | 10 | B.1.429 | 0.000235 |
ORF1ab/nsp3 | 109 | P109L | cCa | cTa | 10 | 10 | B.1.596 | 0.000871 |
ORF1ab/nsp3 | 109 | P109S | Cca | Tca | 9 | 10 | D.2 | 0.000675 |
ORF1ab/nsp3 | 109 | P109S | CcA | TcT | 1 | 10 | D.2 | 0.000075 |
ORF1ab/nsp3 | 109 | P109L | cCa | cTa | 9 | 9 | AY.23 | 0.000628 |
ORF1ab/nsp3 | 109 | P109L | cCa | cTa | 9 | 9 | AY.27 | 0.000582 |
ORF1ab/nsp3 | 109 | P109P | ccA | ccT | 6 | 9 | AY.98 | 0.000474 |
ORF1ab/nsp3 | 109 | P109P | ccA | ccG | 3 | 9 | AY.98 | 0.000237 |
ORF1ab/nsp3 | 109 | P109P | ccA | ccG | 8 | 9 | B.1.1 | 0.000145 |
ORF1ab/nsp3 | 109 | P109P | ccA | ccT | 1 | 9 | B.1.1 | 0.000018 |
ORF1ab/nsp3 | 109 | P109L | cCa | cTa | 9 | 9 | B.1.1.222 | 0.001836 |
ORF1ab/nsp3 | 109 | P109L | cCa | cTa | 9 | 9 | B.1.147 | 0.006803 |
ORF1ab/nsp3 | 109 | P109L | cCa | cTa | 9 | 9 | B.1.525 | 0.001018 |
ORF1ab/nsp3 | 109 | P109L | cCa | cTa | 9 | 9 | B.1.91 | 0.018672 |
ORF1ab/nsp3 | 109 | P109L | cCa | cTa | 8 | 8 | AY.12 | 0.002528 |
ORF1ab/nsp3 | 109 | P109P | ccA | ccG | 8 | 8 | AY.34 | 0.000776 |
ORF1ab/nsp3 | 109 | P109L | cCa | cTa | 8 | 8 | AY.34 | 0.000776 |
ORF1ab/nsp3 | 109 | P109S | Cca | Tca | 8 | 8 | AY.43 | 0.000035 |
ORF1ab/nsp3 | 109 | P109L | cCa | cTa | 7 | 8 | AY.9.1 | 0.000586 |
ORF1ab/nsp3 | 109 | P109L | CCa | TTa | 1 | 8 | AY.9.1 | 0.000084 |
ORF1ab/nsp3 | 109 | P109S | Cca | Tca | 8 | 8 | B.1.1.369 | 0.00357 |
ORF1ab/nsp3 | 109 | P109L | cCa | cTa | 8 | 8 | B.1.1.432 | 0.010127 |
ORF1ab/nsp3 | 109 | P109S | Cca | Tca | 8 | 8 | B.1.2 | 0.00007 |
ORF1ab/nsp3 | 109 | P109L | cCa | cTa | 8 | 8 | B.1.240 | 0.001725 |
ORF1ab/nsp3 | 109 | P109P | ccA | ccG | 8 | 8 | B.1.351.3 | 0.007011 |
ORF1ab/nsp3 | 109 | P109L | cCa | cTa | 8 | 8 | B.1.36 | 0.001167 |
ORF1ab/nsp3 | 109 | P109L | cCa | cTa | 8 | 8 | B.44 | 0.8 |
ORF1ab/nsp3 | 109 | P109L | cCa | cTa | 8 | 8 | Q.7 | 0.008889 |
ORF1ab/nsp3 | 109 | P109L | cCa | cTa | 7 | 7 | AY.120.2 | 0.008997 |
ORF1ab/nsp3 | 109 | P109T | Cca | Aca | 7 | 7 | AY.3 | 0.00007 |
ORF1ab/nsp3 | 109 | P109L | cCa | cTa | 7 | 7 | AY.53 | 0.002013 |
ORF1ab/nsp3 | 109 | P109L | cCa | cTa | 7 | 7 | AY.54 | 0.000667 |
ORF1ab/nsp3 | 109 | P109L | cCa | cTa | 7 | 7 | C.37 | 0.000812 |
ORF1ab/nsp3 | 109 | P109L | cCa | cTa | 7 | 7 | Q.3 | 0.001015 |
ORF1ab/nsp3 | 109 | P109P | ccA | ccC | 5 | 6 | AY.100 | 0.00023 |
ORF1ab/nsp3 | 109 | P109P | ccA | ccG | 1 | 6 | AY.100 | 0.000046 |
ORF1ab/nsp3 | 109 | P109L | cCa | cTa | 6 | 6 | AY.118 | 0.000376 |
ORF1ab/nsp3 | 109 | P109L | cCa | cTa | 6 | 6 | AY.13 | 0.000966 |
ORF1ab/nsp3 | 109 | P109L | cCa | cTa | 6 | 6 | AY.19 | 0.006842 |
ORF1ab/nsp3 | 109 | P109S | Cca | Tca | 6 | 6 | AY.23 | 0.000418 |
ORF1ab/nsp3 | 109 | P109del1 | Cca | -ca | 6 | 6 | AY.44 | 0.000037 |
ORF1ab/nsp3 | 109 | P109L | cCa | cTa | 6 | 6 | AY.5.4 | 0.00166 |
ORF1ab/nsp3 | 109 | P109T | Cca | Aca | 6 | 6 | B.1.1.416 | 0.00543 |
ORF1ab/nsp3 | 109 | P109L | cCa | cTa | 6 | 6 | B.1.177.35 | 0.004147 |
ORF1ab/nsp3 | 109 | P109del1 | Cca | -ca | 5 | 6 | B.1.2 | 0.000044 |
ORF1ab/nsp3 | 109 | P109del1 | ccA | cc- | 1 | 6 | B.1.2 | 0.000009 |
ORF1ab/nsp3 | 109 | P109L | cCa | cTa | 6 | 6 | B.1.351 | 0.000178 |
ORF1ab/nsp3 | 109 | P109L | cCa | cTa | 6 | 6 | D.2 | 0.00045 |
ORF1ab/nsp3 | 109 | P109L | cCa | cTa | 5 | 5 | AH.3 | 0.019011 |
ORF1ab/nsp3 | 109 | P109P | ccA | ccG | 5 | 5 | AY.111 | 0.000916 |
ORF1ab/nsp3 | 109 | P109S | Cca | Tca | 5 | 5 | AY.119 | 0.000177 |
ORF1ab/nsp3 | 109 | P109L | cCa | cTa | 5 | 5 | AY.33 | 0.000334 |
ORF1ab/nsp3 | 109 | P109S | Cca | Tca | 5 | 5 | AY.75 | 0.00028 |
ORF1ab/nsp3 | 109 | P109L | cCa | cTa | 5 | 5 | AY.98.1 | 0.000242 |
ORF1ab/nsp3 | 109 | P109del | CCA | --- | 5 | 5 | B.1 | 0.000046 |
ORF1ab/nsp3 | 109 | P109L | cCa | cTa | 5 | 5 | B.1.1.284 | 0.000537 |
ORF1ab/nsp3 | 109 | P109S | Cca | Tca | 5 | 5 | B.1.1.374 | 0.011876 |
ORF1ab/nsp3 | 109 | P109L | cCa | cTa | 5 | 5 | B.1.1.89 | 0.030303 |
ORF1ab/nsp3 | 109 | P109L | cCa | cTa | 5 | 5 | B.1.177.82 | 0.002387 |
ORF1ab/nsp3 | 109 | P109S | Cca | Tca | 5 | 5 | B.1.221 | 0.000355 |
ORF1ab/nsp3 | 109 | P109L | cCa | cTa | 5 | 5 | B.1.258 | 0.000333 |
ORF1ab/nsp3 | 109 | P109L | cCa | cTa | 5 | 5 | B.1.499 | 0.005252 |
ORF1ab/nsp3 | 109 | P109P | ccA | ccT | 3 | 5 | B.1.526 | 0.000071 |
ORF1ab/nsp3 | 109 | P109P | ccA | ccG | 2 | 5 | B.1.526 | 0.000047 |
ORF1ab/nsp3 | 109 | P109A | Cca | Gca | 5 | 5 | B.1.617.2 | 0.000019 |
ORF1ab/nsp3 | 109 | P109L | cCa | cTa | 5 | 5 | N.4 | 0.021277 |
ORF1ab/nsp3 | 109 | P109S | Cca | Tca | 5 | 5 | P.1 | 0.000079 |
ORF1ab/nsp3 | 109 | P109L | cCa | cTa | 5 | 5 | P.1.12 | 0.00242 |
ORF1ab/nsp3 | 109 | P109L | cCa | cTa | 5 | 5 | Q.8 | 0.000825 |
ORF1ab/nsp3 | 109 | P109del | CCA | --- | 4 | 4 | 0.222222 | |
ORF1ab/nsp3 | 109 | P109S | Cca | Tca | 4 | 4 | AY.102 | 0.000106 |
ORF1ab/nsp3 | 109 | P109L | cCa | cTa | 4 | 4 | AY.114 | 0.000924 |
ORF1ab/nsp3 | 109 | P109L | cCa | cTa | 4 | 4 | AY.14 | 0.000352 |
ORF1ab/nsp3 | 109 | P109S | Cca | Tca | 4 | 4 | AY.15 | 0.008889 |
ORF1ab/nsp3 | 109 | P109T | Cca | Aca | 4 | 4 | AY.23 | 0.000279 |
ORF1ab/nsp3 | 109 | P109P | ccA | ccG | 2 | 4 | AY.33 | 0.000134 |
ORF1ab/nsp3 | 109 | P109P | ccA | ccT | 1 | 4 | AY.33 | 0.000067 |
ORF1ab/nsp3 | 109 | P109P | ccA | ccC | 1 | 4 | AY.33 | 0.000067 |
ORF1ab/nsp3 | 109 | P109Q | cCa | cAa | 4 | 4 | AY.4 | 0.000006 |
ORF1ab/nsp3 | 109 | P109L | cCa | cTa | 4 | 4 | AY.4.5 | 0.00043 |
ORF1ab/nsp3 | 109 | P109L | cCa | cTa | 4 | 4 | AY.45 | 0.000487 |
ORF1ab/nsp3 | 109 | P109L | cCa | cTa | 4 | 4 | AY.46.4 | 0.000658 |
ORF1ab/nsp3 | 109 | P109L | cCa | cTa | 4 | 4 | AY.7.1 | 0.000451 |
ORF1ab/nsp3 | 109 | P109L | cCa | cTa | 4 | 4 | AY.9 | 0.00027 |
ORF1ab/nsp3 | 109 | P109L | cCa | cTa | 4 | 4 | B.1.1.205 | 0.01487 |
ORF1ab/nsp3 | 109 | P109L | cCa | cTa | 4 | 4 | B.1.1.50 | 0.002716 |
ORF1ab/nsp3 | 109 | P109S | Cca | Tca | 4 | 4 | B.1.1.71 | 0.024242 |
ORF1ab/nsp3 | 109 | P109L | cCa | cTa | 4 | 4 | B.1.110.3 | 0.002874 |
ORF1ab/nsp3 | 109 | P109P | ccA | ccG | 4 | 4 | B.1.177 | 0.000053 |
ORF1ab/nsp3 | 109 | P109L | cCa | cTa | 4 | 4 | B.1.177.62 | 0.004768 |
ORF1ab/nsp3 | 109 | P109L | cCa | cTa | 4 | 4 | B.1.177.81 | 0.000757 |
ORF1ab/nsp3 | 109 | P109L | cCa | cTa | 4 | 4 | B.1.36.21 | 0.008639 |
ORF1ab/nsp3 | 109 | P109L | cCa | cTa | 4 | 4 | B.1.617.1 | 0.000516 |
ORF1ab/nsp3 | 109 | P109Q | cCa | cAa | 4 | 4 | B.1.617.2 | 0.000015 |
ORF1ab/nsp3 | 109 | P109L | cCa | cTa | 4 | 4 | Q.1 | 0.000505 |
ORF1ab/nsp3 | 109 | P109S | Cca | Tca | 3 | 3 | A | 0.001161 |
ORF1ab/nsp3 | 109 | P109L | cCa | cTa | 3 | 3 | A.2.5 | 0.001497 |
ORF1ab/nsp3 | 109 | P109A | Cca | Gca | 3 | 3 | AY.102 | 0.00008 |
ORF1ab/nsp3 | 109 | P109S | Cca | Tca | 2 | 3 | AY.105 | 0.001286 |
ORF1ab/nsp3 | 109 | P109S | CcA | TcT | 1 | 3 | AY.105 | 0.000643 |
ORF1ab/nsp3 | 109 | P109P | ccA | ccG | 3 | 3 | AY.119 | 0.000106 |
ORF1ab/nsp3 | 109 | P109L | cCa | cTa | 3 | 3 | AY.120.1 | 0.000963 |
ORF1ab/nsp3 | 109 | P109del1 | Cca | -ca | 3 | 3 | AY.120.1 | 0.000963 |
ORF1ab/nsp3 | 109 | P109L | cCa | cTa | 3 | 3 | AY.121 | 0.000406 |
ORF1ab/nsp3 | 109 | P109S | Cca | Tca | 3 | 3 | AY.14 | 0.000264 |
ORF1ab/nsp3 | 109 | P109S | Cca | Tca | 3 | 3 | AY.25 | 0.000018 |
ORF1ab/nsp3 | 109 | P109L | cCa | cTa | 3 | 3 | AY.36 | 0.000445 |
ORF1ab/nsp3 | 109 | P109del | CCA | --- | 3 | 3 | AY.4 | 0.000005 |
ORF1ab/nsp3 | 109 | P109S | Cca | Tca | 3 | 3 | AY.4.2 | 0.000065 |
ORF1ab/nsp3 | 109 | P109Q | cCa | cAa | 3 | 3 | AY.43 | 0.000013 |
ORF1ab/nsp3 | 109 | P109S | Cca | Tca | 3 | 3 | AY.48 | 0.001395 |
ORF1ab/nsp3 | 109 | P109L | cCa | cTa | 3 | 3 | AY.69 | 0.00056 |
ORF1ab/nsp3 | 109 | P109S | Cca | Tca | 3 | 3 | AY.98 | 0.000237 |
ORF1ab/nsp3 | 109 | P109L | cCa | cTa | 3 | 3 | AY.99.1 | 0.004658 |
ORF1ab/nsp3 | 109 | P109S | Cca | Tca | 3 | 3 | B.1 | 0.000027 |
ORF1ab/nsp3 | 109 | P109L | cCa | cTa | 3 | 3 | B.1.1.316 | 0.002775 |
ORF1ab/nsp3 | 109 | P109del | CCA | --- | 3 | 3 | B.1.1.33 | 0.001263 |
ORF1ab/nsp3 | 109 | P109L | cCa | cTa | 3 | 3 | B.1.1.342 | 0.1875 |
ORF1ab/nsp3 | 109 | P109L | cCa | cTa | 3 | 3 | B.1.1.448 | 0.006098 |
ORF1ab/nsp3 | 109 | P109L | cCa | cTa | 3 | 3 | B.1.1.51 | 0.005155 |
ORF1ab/nsp3 | 109 | P109del | CCA | --- | 3 | 3 | B.1.1.7 | 0.000003 |
ORF1ab/nsp3 | 109 | P109P | ccA | ccT | 2 | 3 | B.1.177.57 | 0.000562 |
ORF1ab/nsp3 | 109 | P109P | ccA | ccG | 1 | 3 | B.1.177.57 | 0.000281 |
ORF1ab/nsp3 | 109 | P109L | cCa | cTa | 3 | 3 | B.1.177.73 | 0.001699 |
ORF1ab/nsp3 | 109 | P109L | cCa | cTa | 3 | 3 | B.1.279 | 0.001541 |
ORF1ab/nsp3 | 109 | P109P | ccA | ccG | 3 | 3 | B.1.351 | 0.000089 |
ORF1ab/nsp3 | 109 | P109S | Cca | Tca | 3 | 3 | B.1.36 | 0.000438 |
ORF1ab/nsp3 | 109 | P109L | cCa | cTa | 3 | 3 | B.1.428 | 0.003061 |
ORF1ab/nsp3 | 109 | P109L | cCa | cTa | 3 | 3 | B.1.497 | 0.000944 |
ORF1ab/nsp3 | 109 | P109S | Cca | Tca | 3 | 3 | B.1.596 | 0.000261 |
ORF1ab/nsp3 | 109 | P109S | Cca | Tca | 3 | 3 | B.1.617.1 | 0.000387 |
ORF1ab/nsp3 | 109 | P109del1 | Cca | -ca | 2 | 3 | B.1.617.2 | 0.000008 |
ORF1ab/nsp3 | 109 | P109del1 | ccA | cc- | 1 | 3 | B.1.617.2 | 0.000004 |
ORF1ab/nsp3 | 109 | P109L | cCa | cTa | 3 | 3 | B.1.618 | 0.012097 |
ORF1ab/nsp3 | 109 | P109P | ccA | ccG | 3 | 3 | C.16 | 0.003181 |
ORF1ab/nsp3 | 109 | P109L | cCa | cTa | 3 | 3 | C.36 | 0.002732 |
ORF1ab/nsp3 | 109 | P109S | Cca | Tca | 3 | 3 | C.37 | 0.000348 |
ORF1ab/nsp3 | 109 | P109P | ccA | ccT | 3 | 3 | D.2 | 0.000225 |
ORF1ab/nsp3 | 109 | P109L | cCa | cTa | 3 | 3 | P.1.15 | 0.000697 |
ORF1ab/nsp3 | 109 | P109L | cCa | cTa | 3 | 3 | P.1.17 | 0.000485 |
ORF1ab/nsp3 | 109 | P109L | cCa | cTa | 3 | 3 | P.7 | 0.0131 |
ORF1ab/nsp3 | 109 | P109P | ccA | ccT | 2 | 3 | Q.8 | 0.00033 |
ORF1ab/nsp3 | 109 | P109P | ccA | ccG | 1 | 3 | Q.8 | 0.000165 |
ORF1ab/nsp3 | 109 | P109A | Cca | Gca | 2 | 2 | 0.111111 | |
ORF1ab/nsp3 | 109 | P109X | CCa | TAa | 2 | 2 | All | 0 |
ORF1ab/nsp3 | 109 | P109del2 | CCA | --N | 1 | 2 | All | 0 |
ORF1ab/nsp3 | 109 | P109del2 | cCA | c-- | 1 | 2 | All | 0 |
ORF1ab/nsp3 | 109 | P109L | cCa | cTa | 2 | 2 | AY.10 | 0.00106 |
ORF1ab/nsp3 | 109 | P109del1 | Cca | -ca | 2 | 2 | AY.103 | 0.000012 |
ORF1ab/nsp3 | 109 | P109X | CCa | TAa | 2 | 2 | AY.105 | 0.001286 |
ORF1ab/nsp3 | 109 | P109L | cCa | cTa | 2 | 2 | AY.111 | 0.000366 |
ORF1ab/nsp3 | 109 | P109L | cCa | cTa | 2 | 2 | AY.116 | 0.000574 |
ORF1ab/nsp3 | 109 | P109P | ccA | ccG | 2 | 2 | AY.116 | 0.000574 |
ORF1ab/nsp3 | 109 | P109S | Cca | Tca | 2 | 2 | AY.117 | 0.000169 |
ORF1ab/nsp3 | 109 | P109A | Cca | Gca | 2 | 2 | AY.119 | 0.000071 |
ORF1ab/nsp3 | 109 | P109P | ccA | ccT | 2 | 2 | AY.121 | 0.000271 |
ORF1ab/nsp3 | 109 | P109P | ccA | ccC | 1 | 2 | AY.20 | 0.000039 |
ORF1ab/nsp3 | 109 | P109P | ccA | ccT | 1 | 2 | AY.20 | 0.000039 |
ORF1ab/nsp3 | 109 | P109S | Cca | Tca | 2 | 2 | AY.26 | 0.000057 |
ORF1ab/nsp3 | 109 | P109P | ccA | ccG | 1 | 2 | AY.26 | 0.000028 |
ORF1ab/nsp3 | 109 | P109P | ccA | ccC | 1 | 2 | AY.26 | 0.000028 |
ORF1ab/nsp3 | 109 | P109P | ccA | ccT | 2 | 2 | AY.29 | 0.000032 |
ORF1ab/nsp3 | 109 | P109del1 | Cca | -ca | 2 | 2 | AY.3 | 0.00002 |
ORF1ab/nsp3 | 109 | P109L | cCa | cTa | 2 | 2 | AY.32 | 0.001065 |
ORF1ab/nsp3 | 109 | P109A | Cca | Gca | 2 | 2 | AY.4.2 | 0.000043 |
ORF1ab/nsp3 | 109 | P109T | Cca | Aca | 2 | 2 | AY.42 | 0.00008 |
ORF1ab/nsp3 | 109 | P109Q | cCa | cAa | 2 | 2 | AY.44 | 0.000012 |
ORF1ab/nsp3 | 109 | P109P | ccA | ccT | 1 | 2 | AY.47 | 0.000031 |
ORF1ab/nsp3 | 109 | P109P | ccA | ccG | 1 | 2 | AY.47 | 0.000031 |
ORF1ab/nsp3 | 109 | P109L | cCa | cTa | 2 | 2 | AY.55 | 0.001835 |
ORF1ab/nsp3 | 109 | P109P | ccA | ccC | 1 | 2 | AY.61 | 0.000105 |
ORF1ab/nsp3 | 109 | P109P | ccA | ccG | 1 | 2 | AY.61 | 0.000105 |
ORF1ab/nsp3 | 109 | P109L | cCa | cTa | 2 | 2 | AY.7 | 0.000392 |
ORF1ab/nsp3 | 109 | P109L | cCa | cTa | 2 | 2 | AY.7.2 | 0.001119 |
ORF1ab/nsp3 | 109 | P109S | Cca | Tca | 2 | 2 | AY.73 | 0.001331 |
ORF1ab/nsp3 | 109 | P109L | cCa | cTa | 2 | 2 | AY.74 | 0.000231 |
ORF1ab/nsp3 | 109 | P109L | cCa | cTa | 2 | 2 | AY.79 | 0.002421 |
ORF1ab/nsp3 | 109 | P109L | cCa | cTa | 2 | 2 | AY.8 | 0.001212 |
ORF1ab/nsp3 | 109 | P109L | cCa | cTa | 2 | 2 | AY.90 | 0.001369 |
ORF1ab/nsp3 | 109 | P109P | ccA | ccT | 1 | 2 | AY.95 | 0.000761 |
ORF1ab/nsp3 | 109 | P109P | ccA | ccC | 1 | 2 | AY.95 | 0.000761 |
ORF1ab/nsp3 | 109 | P109L | cCa | cTa | 2 | 2 | AY.99 | 0.002099 |
ORF1ab/nsp3 | 109 | P109L | cCa | cTa | 2 | 2 | AZ.1 | 0.001735 |
ORF1ab/nsp3 | 109 | P109P | ccA | ccT | 1 | 2 | B | 0.000128 |
ORF1ab/nsp3 | 109 | P109P | ccA | ccG | 1 | 2 | B | 0.000128 |
ORF1ab/nsp3 | 109 | P109T | Cca | Aca | 2 | 2 | B.1 | 0.000018 |
ORF1ab/nsp3 | 109 | P109S | Cca | Tca | 2 | 2 | B.1.1 | 0.000036 |
ORF1ab/nsp3 | 109 | P109del | CCA | --- | 2 | 2 | B.1.1 | 0.000036 |
ORF1ab/nsp3 | 109 | P109L | cCa | cTa | 2 | 2 | B.1.1.1 | 0.000653 |
ORF1ab/nsp3 | 109 | P109P | ccA | ccT | 2 | 2 | B.1.1.207 | 0.002364 |
ORF1ab/nsp3 | 109 | P109L | cCa | cTa | 2 | 2 | B.1.1.207 | 0.002364 |
ORF1ab/nsp3 | 109 | P109L | cCa | cTa | 2 | 2 | B.1.1.230 | 0.018349 |
ORF1ab/nsp3 | 109 | P109L | cCa | cTa | 2 | 2 | B.1.1.312 | 0.003824 |
ORF1ab/nsp3 | 109 | P109L | cCa | cTa | 2 | 2 | B.1.1.317 | 0.000823 |
ORF1ab/nsp3 | 109 | P109del | CCA | --- | 2 | 2 | B.1.1.348 | 0.001592 |
ORF1ab/nsp3 | 109 | P109L | cCa | cTa | 2 | 2 | B.1.1.372 | 0.001377 |
ORF1ab/nsp3 | 109 | P109L | cCa | cTa | 2 | 2 | B.1.1.385 | 0.008929 |
ORF1ab/nsp3 | 109 | P109L | cCa | cTa | 2 | 2 | B.1.1.39 | 0.001019 |
ORF1ab/nsp3 | 109 | P109S | Cca | Tca | 2 | 2 | B.1.1.411 | 0.029412 |
ORF1ab/nsp3 | 109 | P109L | cCa | cTa | 2 | 2 | B.1.1.434 | 0.000697 |
ORF1ab/nsp3 | 109 | P109S | Cca | Tca | 2 | 2 | B.1.1.519 | 0.000079 |
ORF1ab/nsp3 | 109 | P109del1 | ccA | cc- | 1 | 2 | B.1.1.7 | 0.000001 |
ORF1ab/nsp3 | 109 | P109del1 | Cca | -ca | 1 | 2 | B.1.1.7 | 0.000001 |
ORF1ab/nsp3 | 109 | P109S | Cca | Tca | 2 | 2 | B.1.160 | 0.000062 |
ORF1ab/nsp3 | 109 | P109L | cCa | cTa | 2 | 2 | B.1.160.7 | 0.004158 |
ORF1ab/nsp3 | 109 | P109del | CCA | --- | 2 | 2 | B.1.177 | 0.000026 |
ORF1ab/nsp3 | 109 | P109L | cCa | cTa | 2 | 2 | B.1.177.24 | 0.002591 |
ORF1ab/nsp3 | 109 | P109L | cCa | cTa | 2 | 2 | B.1.177.50 | 0.00939 |
ORF1ab/nsp3 | 109 | P109L | cCa | cTa | 2 | 2 | B.1.177.7 | 0.00033 |
ORF1ab/nsp3 | 109 | P109L | cCa | cTa | 2 | 2 | B.1.177.86 | 0.000367 |
ORF1ab/nsp3 | 109 | P109del | CCA | --- | 2 | 2 | B.1.2 | 0.000018 |
ORF1ab/nsp3 | 109 | P109T | Cca | Aca | 2 | 2 | B.1.2 | 0.000018 |
ORF1ab/nsp3 | 109 | P109L | cCa | cTa | 2 | 2 | B.1.214.2 | 0.001199 |
ORF1ab/nsp3 | 109 | P109L | cCa | cTa | 2 | 2 | B.1.222 | 0.003384 |
ORF1ab/nsp3 | 109 | P109L | cCa | cTa | 2 | 2 | B.1.232 | 0.001075 |
ORF1ab/nsp3 | 109 | P109P | ccA | ccG | 2 | 2 | B.1.243 | 0.000139 |
ORF1ab/nsp3 | 109 | P109S | Cca | Tca | 2 | 2 | B.1.243 | 0.000139 |
ORF1ab/nsp3 | 109 | P109L | cCa | cTa | 2 | 2 | B.1.298 | 0.004228 |
ORF1ab/nsp3 | 109 | P109L | cCa | cTa | 2 | 2 | B.1.36.8 | 0.002 |
ORF1ab/nsp3 | 109 | P109L | cCa | cTa | 2 | 2 | B.1.369 | 0.00057 |
ORF1ab/nsp3 | 109 | P109L | cCa | cTa | 2 | 2 | B.1.426 | 0.002018 |
ORF1ab/nsp3 | 109 | P109L | cCa | cTa | 2 | 2 | B.1.427 | 0.000101 |
ORF1ab/nsp3 | 109 | P109S | Cca | Tca | 2 | 2 | B.1.427 | 0.000101 |
ORF1ab/nsp3 | 109 | P109S | Cca | Tca | 2 | 2 | B.1.429 | 0.000047 |
ORF1ab/nsp3 | 109 | P109S | Cca | Tca | 2 | 2 | B.1.436 | 0.002058 |
ORF1ab/nsp3 | 109 | P109L | cCa | cTa | 2 | 2 | B.1.466.2 | 0.000782 |
ORF1ab/nsp3 | 109 | P109P | ccA | ccG | 2 | 2 | B.1.517 | 0.000854 |
ORF1ab/nsp3 | 109 | P109L | cCa | cTa | 2 | 2 | B.1.561 | 0.000794 |
ORF1ab/nsp3 | 109 | P109L | cCa | cTa | 2 | 2 | B.1.595 | 0.000522 |
ORF1ab/nsp3 | 109 | P109P | ccA | ccT | 2 | 2 | B.1.609 | 0.000959 |
ORF1ab/nsp3 | 109 | P109L | cCa | cTa | 2 | 2 | B.1.609 | 0.000959 |
ORF1ab/nsp3 | 109 | P109L | cCa | cTa | 2 | 2 | B.1.628 | 0.000705 |
ORF1ab/nsp3 | 109 | P109L | cCa | cTa | 2 | 2 | B.1.636 | 0.013423 |
ORF1ab/nsp3 | 109 | P109L | cCa | cTa | 2 | 2 | B.1.637 | 0.000146 |
ORF1ab/nsp3 | 109 | P109L | cCa | cTa | 2 | 2 | C.16 | 0.002121 |
ORF1ab/nsp3 | 109 | P109L | cCa | cTa | 2 | 2 | N.5 | 0.003534 |
ORF1ab/nsp3 | 109 | P109del | CCA | --- | 2 | 2 | N.6 | 0.014184 |
ORF1ab/nsp3 | 109 | P109P | ccA | ccG | 1 | 1 | A | 0.000387 |
ORF1ab/nsp3 | 109 | P109L | cCa | cTa | 1 | 1 | A.2.2 | 0.001689 |
ORF1ab/nsp3 | 109 | P109P | ccA | ccG | 1 | 1 | A.2.5.2 | 0.001572 |
ORF1ab/nsp3 | 109 | P109P | ccA | ccT | 1 | 1 | A.27 | 0.001656 |
ORF1ab/nsp3 | 109 | P109P | ccA | ccG | 1 | 1 | A.6 | 0.005128 |
ORF1ab/nsp3 | 109 | P109L | cCa | cTa | 1 | 1 | AD.2 | 0.000219 |
ORF1ab/nsp3 | 109 | P109L | cCa | cTa | 1 | 1 | AE.8 | 0.000489 |
ORF1ab/nsp3 | 109 | P109F | CCA | TTT | 1 | 1 | All | 0 |
ORF1ab/nsp3 | 109 | P109C | CCA | TGT | 1 | 1 | All | 0 |
ORF1ab/nsp3 | 109 | P109Y | CCA | TAT | 1 | 1 | All | 0 |
ORF1ab/nsp3 | 109 | P109V | CCA | GTT | 1 | 1 | All | 0 |
ORF1ab/nsp3 | 109 | P109L | cCa | cTa | 1 | 1 | AS.1 | 0.009524 |
ORF1ab/nsp3 | 109 | P109P | ccA | ccG | 1 | 1 | AU.2 | 0.002421 |
ORF1ab/nsp3 | 109 | P109V | CCA | GTT | 1 | 1 | AY.100 | 0.000046 |
ORF1ab/nsp3 | 109 | P109Q | cCa | cAa | 1 | 1 | AY.103 | 0.000006 |
ORF1ab/nsp3 | 109 | P109A | Cca | Gca | 1 | 1 | AY.103 | 0.000006 |
ORF1ab/nsp3 | 109 | P109Y | CCA | TAT | 1 | 1 | AY.105 | 0.000643 |
ORF1ab/nsp3 | 109 | P109Q | cCa | cAa | 1 | 1 | AY.105 | 0.000643 |
ORF1ab/nsp3 | 109 | P109L | CCa | TTa | 1 | 1 | AY.105 | 0.000643 |
ORF1ab/nsp3 | 109 | P109F | CCA | TTT | 1 | 1 | AY.105 | 0.000643 |
ORF1ab/nsp3 | 109 | P109L | cCa | cTa | 1 | 1 | AY.106 | 0.000335 |
ORF1ab/nsp3 | 109 | P109P | ccA | ccT | 1 | 1 | AY.106 | 0.000335 |
ORF1ab/nsp3 | 109 | P109L | cCa | cTa | 1 | 1 | AY.107 | 0.000466 |
ORF1ab/nsp3 | 109 | P109S | CcA | TcC | 1 | 1 | AY.109 | 0.00074 |
ORF1ab/nsp3 | 109 | P109L | cCa | cTa | 1 | 1 | AY.11 | 0.001339 |
ORF1ab/nsp3 | 109 | P109L | cCa | cTa | 1 | 1 | AY.110 | 0.000113 |
ORF1ab/nsp3 | 109 | P109A | Cca | Gca | 1 | 1 | AY.113 | 0.000142 |
ORF1ab/nsp3 | 109 | P109P | ccA | ccT | 1 | 1 | AY.117 | 0.000085 |
ORF1ab/nsp3 | 109 | P109P | ccA | ccC | 1 | 1 | AY.118 | 0.000063 |
ORF1ab/nsp3 | 109 | P109del1 | Cca | -ca | 1 | 1 | AY.120 | 0.000037 |
ORF1ab/nsp3 | 109 | P109S | Cca | Tca | 1 | 1 | AY.120 | 0.000037 |
ORF1ab/nsp3 | 109 | P109P | ccA | ccG | 1 | 1 | AY.120 | 0.000037 |
ORF1ab/nsp3 | 109 | P109L | cCa | cTa | 1 | 1 | AY.120.2.1 | 0.000498 |
ORF1ab/nsp3 | 109 | P109Q | cCa | cAa | 1 | 1 | AY.121 | 0.000135 |
ORF1ab/nsp3 | 109 | P109P | ccA | ccT | 1 | 1 | AY.13 | 0.000161 |
ORF1ab/nsp3 | 109 | P109A | Cca | Gca | 1 | 1 | AY.13 | 0.000161 |
ORF1ab/nsp3 | 109 | P109P | ccA | ccG | 1 | 1 | AY.14 | 0.000088 |
ORF1ab/nsp3 | 109 | P109L | cCa | cTa | 1 | 1 | AY.16 | 0.00038 |
ORF1ab/nsp3 | 109 | P109S | Cca | Tca | 1 | 1 | AY.2 | 0.000356 |
ORF1ab/nsp3 | 109 | P109P | ccA | ccG | 1 | 1 | AY.23 | 0.00007 |
ORF1ab/nsp3 | 109 | P109Q | cCa | cAa | 1 | 1 | AY.25 | 0.000006 |
ORF1ab/nsp3 | 109 | P109A | Cca | Gca | 1 | 1 | AY.25 | 0.000006 |
ORF1ab/nsp3 | 109 | P109del | CCA | --- | 1 | 1 | AY.25 | 0.000006 |
ORF1ab/nsp3 | 109 | P109del1 | Cca | -ca | 1 | 1 | AY.25 | 0.000006 |
ORF1ab/nsp3 | 109 | P109del | CCA | --- | 1 | 1 | AY.26 | 0.000028 |
ORF1ab/nsp3 | 109 | P109L | cCa | cTa | 1 | 1 | AY.28 | 0.00189 |
ORF1ab/nsp3 | 109 | P109S | Cca | Tca | 1 | 1 | AY.29 | 0.000016 |
ORF1ab/nsp3 | 109 | P109del2 | cCA | c-- | 1 | 1 | AY.3 | 0.00001 |
ORF1ab/nsp3 | 109 | P109Q | cCA | cAG | 1 | 1 | AY.3 | 0.00001 |
ORF1ab/nsp3 | 109 | P109L | cCa | cTa | 1 | 1 | AY.3.1 | 0.000085 |
ORF1ab/nsp3 | 109 | P109del | CCA | --- | 1 | 1 | AY.30 | 0.000396 |
ORF1ab/nsp3 | 109 | P109L | cCa | cTa | 1 | 1 | AY.35 | 0.000233 |
ORF1ab/nsp3 | 109 | P109S | Cca | Tca | 1 | 1 | AY.37 | 0.000316 |
ORF1ab/nsp3 | 109 | P109L | cCa | cTa | 1 | 1 | AY.38 | 0.000499 |
ORF1ab/nsp3 | 109 | P109S | Cca | Tca | 1 | 1 | AY.39 | 0.000025 |
ORF1ab/nsp3 | 109 | P109P | ccA | ccG | 1 | 1 | AY.39 | 0.000025 |
ORF1ab/nsp3 | 109 | P109P | ccA | ccG | 1 | 1 | AY.39.1 | 0.00004 |
ORF1ab/nsp3 | 109 | P109L | cCa | cTa | 1 | 1 | AY.4.2.1 | 0.000149 |
ORF1ab/nsp3 | 109 | P109S | Cca | Tca | 1 | 1 | AY.4.4 | 0.000409 |
ORF1ab/nsp3 | 109 | P109S | Cca | Tca | 1 | 1 | AY.4.5 | 0.000107 |
ORF1ab/nsp3 | 109 | P109del | CCA | --- | 1 | 1 | AY.42 | 0.00004 |
ORF1ab/nsp3 | 109 | P109del | CCA | --- | 1 | 1 | AY.43 | 0.000004 |
ORF1ab/nsp3 | 109 | P109A | Cca | Gca | 1 | 1 | AY.43 | 0.000004 |
ORF1ab/nsp3 | 109 | P109C | CCA | TGT | 1 | 1 | AY.43 | 0.000004 |
ORF1ab/nsp3 | 109 | P109R | cCa | cGa | 1 | 1 | AY.43 | 0.000004 |
ORF1ab/nsp3 | 109 | P109T | Cca | Aca | 1 | 1 | AY.43 | 0.000004 |
ORF1ab/nsp3 | 109 | P109del | CCA | --- | 1 | 1 | AY.46 | 0.000104 |
ORF1ab/nsp3 | 109 | P109Q | cCa | cAa | 1 | 1 | AY.46.2 | 0.000635 |
ORF1ab/nsp3 | 109 | P109S | Cca | Tca | 1 | 1 | AY.46.4 | 0.000165 |
ORF1ab/nsp3 | 109 | P109L | cCa | cTa | 1 | 1 | AY.46.5 | 0.000198 |
ORF1ab/nsp3 | 109 | P109P | ccA | ccG | 1 | 1 | AY.46.5 | 0.000198 |
ORF1ab/nsp3 | 109 | P109T | Cca | Aca | 1 | 1 | AY.46.6 | 0.000072 |
ORF1ab/nsp3 | 109 | P109T | Cca | Aca | 1 | 1 | AY.47 | 0.000031 |
ORF1ab/nsp3 | 109 | P109del | CCA | --- | 1 | 1 | AY.5 | 0.000021 |
ORF1ab/nsp3 | 109 | P109L | cCa | cTa | 1 | 1 | AY.5.3 | 0.000337 |
ORF1ab/nsp3 | 109 | P109S | Cca | Tca | 1 | 1 | AY.50 | 0.000799 |
ORF1ab/nsp3 | 109 | P109S | Cca | Tca | 1 | 1 | AY.53 | 0.000288 |
ORF1ab/nsp3 | 109 | P109del1 | Cca | -ca | 1 | 1 | AY.54 | 0.000095 |
ORF1ab/nsp3 | 109 | P109P | ccA | ccT | 1 | 1 | AY.55 | 0.000917 |
ORF1ab/nsp3 | 109 | P109P | ccA | ccT | 1 | 1 | AY.56 | 0.001605 |
ORF1ab/nsp3 | 109 | P109L | cCa | cTa | 1 | 1 | AY.59 | 0.00053 |
ORF1ab/nsp3 | 109 | P109P | ccA | ccG | 1 | 1 | AY.59 | 0.00053 |
ORF1ab/nsp3 | 109 | P109del1 | ccA | cc- | 1 | 1 | AY.65 | 0.000533 |
ORF1ab/nsp3 | 109 | P109L | cCa | cTa | 1 | 1 | AY.68 | 0.000274 |
ORF1ab/nsp3 | 109 | P109Q | cCa | cAa | 1 | 1 | AY.7 | 0.000196 |
ORF1ab/nsp3 | 109 | P109L | cCa | cTa | 1 | 1 | AY.71 | 0.000475 |
ORF1ab/nsp3 | 109 | P109S | Cca | Tca | 1 | 1 | AY.74 | 0.000116 |
ORF1ab/nsp3 | 109 | P109L | cCa | cTa | 1 | 1 | AY.77 | 0.001127 |
ORF1ab/nsp3 | 109 | P109L | cCa | cTa | 1 | 1 | AY.78 | 0.001541 |
ORF1ab/nsp3 | 109 | P109S | Cca | Tca | 1 | 1 | AY.79 | 0.001211 |
ORF1ab/nsp3 | 109 | P109L | cCa | cTa | 1 | 1 | AY.80 | 0.001129 |
ORF1ab/nsp3 | 109 | P109P | ccA | ccC | 1 | 1 | AY.82 | 0.001357 |
ORF1ab/nsp3 | 109 | P109L | cCa | cTa | 1 | 1 | AY.84 | 0.000437 |
ORF1ab/nsp3 | 109 | P109L | cCa | cTa | 1 | 1 | AY.85 | 0.000427 |
ORF1ab/nsp3 | 109 | P109L | cCa | cTa | 1 | 1 | AY.87 | 0.000833 |
ORF1ab/nsp3 | 109 | P109P | ccA | ccG | 1 | 1 | AY.9.1 | 0.000084 |
ORF1ab/nsp3 | 109 | P109Q | cCA | cAG | 1 | 1 | AY.9.2 | 0.000037 |
ORF1ab/nsp3 | 109 | P109L | cCa | cTa | 1 | 1 | AY.93 | 0.000273 |
ORF1ab/nsp3 | 109 | P109P | ccA | ccG | 1 | 1 | AY.96 | 0.002075 |
ORF1ab/nsp3 | 109 | P109Q | cCa | cAa | 1 | 1 | AY.98 | 0.000079 |
ORF1ab/nsp3 | 109 | P109R | cCa | cGa | 1 | 1 | AY.99 | 0.001049 |
ORF1ab/nsp3 | 109 | P109R | cCa | cGa | 1 | 1 | AY.99.2 | 0.000092 |
ORF1ab/nsp3 | 109 | P109L | cCa | cTa | 1 | 1 | AZ.2 | 0.000821 |
ORF1ab/nsp3 | 109 | P109L | cCa | cTa | 1 | 1 | B | 0.000128 |
ORF1ab/nsp3 | 109 | P109P | ccA | ccT | 1 | 1 | B.1.1.121 | 0.002427 |
ORF1ab/nsp3 | 109 | P109L | cCa | cTa | 1 | 1 | B.1.1.170 | 0.001247 |
ORF1ab/nsp3 | 109 | P109L | cCa | cTa | 1 | 1 | B.1.1.198 | 0.001468 |
ORF1ab/nsp3 | 109 | P109L | cCa | cTa | 1 | 1 | B.1.1.216 | 0.00089 |
ORF1ab/nsp3 | 109 | P109S | Cca | Tca | 1 | 1 | B.1.1.216 | 0.00089 |
ORF1ab/nsp3 | 109 | P109P | ccA | ccT | 1 | 1 | B.1.1.241 | 0.00207 |
ORF1ab/nsp3 | 109 | P109L | cCa | cTa | 1 | 1 | B.1.1.25 | 0.000569 |
ORF1ab/nsp3 | 109 | P109L | cCa | cTa | 1 | 1 | B.1.1.253 | 0.002506 |
ORF1ab/nsp3 | 109 | P109L | cCa | cTa | 1 | 1 | B.1.1.277 | 0.000759 |
ORF1ab/nsp3 | 109 | P109L | cCa | cTa | 1 | 1 | B.1.1.28 | 0.000311 |
ORF1ab/nsp3 | 109 | P109L | cCa | cTa | 1 | 1 | B.1.1.286 | 0.002899 |
ORF1ab/nsp3 | 109 | P109L | cCa | cTa | 1 | 1 | B.1.1.289 | 0.002083 |
ORF1ab/nsp3 | 109 | P109P | ccA | ccG | 1 | 1 | B.1.1.291 | 0.000742 |
ORF1ab/nsp3 | 109 | P109L | cCa | cTa | 1 | 1 | B.1.1.294 | 0.001266 |
ORF1ab/nsp3 | 109 | P109L | cCa | cTa | 1 | 1 | B.1.1.305 | 0.003861 |
ORF1ab/nsp3 | 109 | P109L | cCa | cTa | 1 | 1 | B.1.1.306 | 0.000438 |
ORF1ab/nsp3 | 109 | P109L | cCa | cTa | 1 | 1 | B.1.1.332 | 0.03125 |
ORF1ab/nsp3 | 109 | P109S | Cca | Tca | 1 | 1 | B.1.1.344 | 0.010753 |
ORF1ab/nsp3 | 109 | P109L | cCa | cTa | 1 | 1 | B.1.1.364 | 0.066667 |
ORF1ab/nsp3 | 109 | P109del | CCA | --- | 1 | 1 | B.1.1.369 | 0.000446 |
ORF1ab/nsp3 | 109 | P109P | ccA | ccC | 1 | 1 | B.1.1.37 | 0.000193 |
ORF1ab/nsp3 | 109 | P109L | cCa | cTa | 1 | 1 | B.1.1.37 | 0.000193 |
ORF1ab/nsp3 | 109 | P109S | Cca | Tca | 1 | 1 | B.1.1.389 | 0.006061 |
ORF1ab/nsp3 | 109 | P109S | Cca | Tca | 1 | 1 | B.1.1.39 | 0.00051 |
ORF1ab/nsp3 | 109 | P109L | cCa | cTa | 1 | 1 | B.1.1.398 | 0.003226 |
ORF1ab/nsp3 | 109 | P109L | cCa | cTa | 1 | 1 | B.1.1.420 | 0.001006 |
ORF1ab/nsp3 | 109 | P109S | Cca | Tca | 1 | 1 | B.1.1.434 | 0.000349 |
ORF1ab/nsp3 | 109 | P109L | cCa | cTa | 1 | 1 | B.1.1.440 | 0.011765 |
ORF1ab/nsp3 | 109 | P109P | ccA | ccC | 1 | 1 | B.1.1.50 | 0.000679 |
ORF1ab/nsp3 | 109 | P109S | Cca | Tca | 1 | 1 | B.1.1.506 | 0.037037 |
ORF1ab/nsp3 | 109 | P109P | ccA | ccG | 1 | 1 | B.1.1.55 | 0.012987 |
ORF1ab/nsp3 | 109 | P109P | ccA | ccT | 1 | 1 | B.1.1.63 | 0.000386 |
ORF1ab/nsp3 | 109 | P109L | cCa | cTa | 1 | 1 | B.1.1.70 | 0.000341 |
ORF1ab/nsp3 | 109 | P109L | cCa | cTa | 1 | 1 | B.1.1.71 | 0.006061 |
ORF1ab/nsp3 | 109 | P109T | Cca | Aca | 1 | 1 | B.1.1.71 | 0.006061 |
ORF1ab/nsp3 | 109 | P109L | cCa | cTa | 1 | 1 | B.1.111 | 0.001175 |
ORF1ab/nsp3 | 109 | P109L | cCa | cTa | 1 | 1 | B.1.112 | 0.005181 |
ORF1ab/nsp3 | 109 | P109Q | cCa | cAa | 1 | 1 | B.1.177 | 0.000013 |
ORF1ab/nsp3 | 109 | P109T | Cca | Aca | 1 | 1 | B.1.177 | 0.000013 |
ORF1ab/nsp3 | 109 | P109S | Cca | Tca | 1 | 1 | B.1.177 | 0.000013 |
ORF1ab/nsp3 | 109 | P109L | cCa | cTa | 1 | 1 | B.1.177.10 | 0.000878 |
ORF1ab/nsp3 | 109 | P109L | cCa | cTa | 1 | 1 | B.1.177.12 | 0.000152 |
ORF1ab/nsp3 | 109 | P109L | cCa | cTa | 1 | 1 | B.1.177.15 | 0.000631 |
ORF1ab/nsp3 | 109 | P109L | cCa | cTa | 1 | 1 | B.1.177.16 | 0.000664 |
ORF1ab/nsp3 | 109 | P109L | cCa | cTa | 1 | 1 | B.1.177.17 | 0.000821 |
ORF1ab/nsp3 | 109 | P109S | Cca | Tca | 1 | 1 | B.1.177.17 | 0.000821 |
ORF1ab/nsp3 | 109 | P109L | cCa | cTa | 1 | 1 | B.1.177.19 | 0.001431 |
ORF1ab/nsp3 | 109 | P109L | cCa | cTa | 1 | 1 | B.1.177.33 | 0.001645 |
ORF1ab/nsp3 | 109 | P109L | cCa | cTa | 1 | 1 | B.1.177.4 | 0.000211 |
ORF1ab/nsp3 | 109 | P109P | ccA | ccG | 1 | 1 | B.1.177.40 | 0.005155 |
ORF1ab/nsp3 | 109 | P109L | cCa | cTa | 1 | 1 | B.1.177.41 | 0.0025 |
ORF1ab/nsp3 | 109 | P109S | Cca | Tca | 1 | 1 | B.1.177.44 | 0.000519 |
ORF1ab/nsp3 | 109 | P109T | Cca | Aca | 1 | 1 | B.1.177.44 | 0.000519 |
ORF1ab/nsp3 | 109 | P109P | ccA | ccG | 1 | 1 | B.1.177.48 | 0.003125 |
ORF1ab/nsp3 | 109 | P109L | cCa | cTa | 1 | 1 | B.1.177.48 | 0.003125 |
ORF1ab/nsp3 | 109 | P109S | Cca | Tca | 1 | 1 | B.1.177.5 | 0.001242 |
ORF1ab/nsp3 | 109 | P109A | Cca | Gca | 1 | 1 | B.1.177.62 | 0.001192 |
ORF1ab/nsp3 | 109 | P109S | Cca | Tca | 1 | 1 | B.1.177.65 | 0.000665 |
ORF1ab/nsp3 | 109 | P109L | cCa | cTa | 1 | 1 | B.1.177.79 | 0.002342 |
ORF1ab/nsp3 | 109 | P109L | cCa | cTa | 1 | 1 | B.1.177.8 | 0.000752 |
ORF1ab/nsp3 | 109 | P109Q | cCA | cAG | 1 | 1 | B.1.2 | 0.000009 |
ORF1ab/nsp3 | 109 | P109Q | cCa | cAa | 1 | 1 | B.1.206 | 0.000816 |
ORF1ab/nsp3 | 109 | P109P | ccA | ccG | 1 | 1 | B.1.214 | 0.003663 |
ORF1ab/nsp3 | 109 | P109L | cCa | cTa | 1 | 1 | B.1.218 | 0.005155 |
ORF1ab/nsp3 | 109 | P109L | cCa | cTa | 1 | 1 | B.1.219 | 0.009434 |
ORF1ab/nsp3 | 109 | P109S | Cca | Tca | 1 | 1 | B.1.234 | 0.000132 |
ORF1ab/nsp3 | 109 | P109L | cCa | cTa | 1 | 1 | B.1.237 | 0.004975 |
ORF1ab/nsp3 | 109 | P109P | ccA | ccT | 1 | 1 | B.1.258 | 0.000067 |
ORF1ab/nsp3 | 109 | P109L | cCa | cTa | 1 | 1 | B.1.258.17 | 0.000104 |
ORF1ab/nsp3 | 109 | P109Q | cCa | cAa | 1 | 1 | B.1.284 | 0.013158 |
ORF1ab/nsp3 | 109 | P109L | cCa | cTa | 1 | 1 | B.1.319 | 0.003049 |
ORF1ab/nsp3 | 109 | P109S | Cca | Tca | 1 | 1 | B.1.328 | 0.03125 |
ORF1ab/nsp3 | 109 | P109L | cCa | cTa | 1 | 1 | B.1.348 | 0.018182 |
ORF1ab/nsp3 | 109 | P109del | CCA | --- | 1 | 1 | B.1.349 | 0.000715 |
ORF1ab/nsp3 | 109 | P109R | cCa | cGa | 1 | 1 | B.1.351 | 0.00003 |
ORF1ab/nsp3 | 109 | P109L | cCa | cTa | 1 | 1 | B.1.351.2 | 0.000303 |
ORF1ab/nsp3 | 109 | P109L | cCa | cTa | 1 | 1 | B.1.356 | 0.001727 |
ORF1ab/nsp3 | 109 | P109L | cCa | cTa | 1 | 1 | B.1.36.1 | 0.00114 |
ORF1ab/nsp3 | 109 | P109L | cCa | cTa | 1 | 1 | B.1.36.10 | 0.004785 |
ORF1ab/nsp3 | 109 | P109L | cCa | cTa | 1 | 1 | B.1.36.18 | 0.00042 |
ORF1ab/nsp3 | 109 | P109L | cCa | cTa | 1 | 1 | B.1.36.28 | 0.005747 |
ORF1ab/nsp3 | 109 | P109L | cCa | cTa | 1 | 1 | B.1.36.29 | 0.000517 |
ORF1ab/nsp3 | 109 | P109P | ccA | ccG | 1 | 1 | B.1.36.7 | 0.004 |
ORF1ab/nsp3 | 109 | P109Q | cCa | cAa | 1 | 1 | B.1.369 | 0.000285 |
ORF1ab/nsp3 | 109 | P109S | Cca | Tca | 1 | 1 | B.1.375 | 0.00082 |
ORF1ab/nsp3 | 109 | P109S | Cca | Tca | 1 | 1 | B.1.38 | 0.032258 |
ORF1ab/nsp3 | 109 | P109L | cCa | cTa | 1 | 1 | B.1.399 | 0.001934 |
ORF1ab/nsp3 | 109 | P109L | cCa | cTa | 1 | 1 | B.1.404 | 0.001302 |
ORF1ab/nsp3 | 109 | P109L | cCa | cTa | 1 | 1 | B.1.409 | 0.000781 |
ORF1ab/nsp3 | 109 | P109L | cCa | cTa | 1 | 1 | B.1.416 | 0.001269 |
ORF1ab/nsp3 | 109 | P109del | CCA | --- | 1 | 1 | B.1.416.1 | 0.001563 |
ORF1ab/nsp3 | 109 | P109S | Cca | Tca | 1 | 1 | B.1.426 | 0.001009 |
ORF1ab/nsp3 | 109 | P109P | ccA | ccG | 1 | 1 | B.1.427 | 0.00005 |
ORF1ab/nsp3 | 109 | P109T | Cca | Aca | 1 | 1 | B.1.427 | 0.00005 |
ORF1ab/nsp3 | 109 | P109A | Cca | Gca | 1 | 1 | B.1.427 | 0.00005 |
ORF1ab/nsp3 | 109 | P109del | CCA | --- | 1 | 1 | B.1.429 | 0.000024 |
ORF1ab/nsp3 | 109 | P109T | Cca | Aca | 1 | 1 | B.1.429 | 0.000024 |
ORF1ab/nsp3 | 109 | P109P | ccA | ccG | 1 | 1 | B.1.433 | 0.003195 |
ORF1ab/nsp3 | 109 | P109L | cCa | cTa | 1 | 1 | B.1.436 | 0.001029 |
ORF1ab/nsp3 | 109 | P109P | ccA | ccT | 1 | 1 | B.1.438.1 | 0.000107 |
ORF1ab/nsp3 | 109 | P109L | cCa | cTa | 1 | 1 | B.1.470 | 0.001404 |
ORF1ab/nsp3 | 109 | P109Q | cCa | cAa | 1 | 1 | B.1.470 | 0.001404 |
ORF1ab/nsp3 | 109 | P109L | cCa | cTa | 1 | 1 | B.1.523 | 0.002451 |
ORF1ab/nsp3 | 109 | P109S | Cca | Tca | 1 | 1 | B.1.525 | 0.000113 |
ORF1ab/nsp3 | 109 | P109L | cCa | cTa | 1 | 1 | B.1.538 | 0.008065 |
ORF1ab/nsp3 | 109 | P109L | cCa | cTa | 1 | 1 | B.1.543 | 0.01 |
ORF1ab/nsp3 | 109 | P109del | CCA | --- | 1 | 1 | B.1.561 | 0.000397 |
ORF1ab/nsp3 | 109 | P109P | ccA | ccT | 1 | 1 | B.1.561 | 0.000397 |
ORF1ab/nsp3 | 109 | P109L | cCa | cTa | 1 | 1 | B.1.564 | 0.000426 |
ORF1ab/nsp3 | 109 | P109S | Cca | Tca | 1 | 1 | B.1.565 | 0.00081 |
ORF1ab/nsp3 | 109 | P109L | cCa | cTa | 1 | 1 | B.1.576 | 0.000907 |
ORF1ab/nsp3 | 109 | P109del | CCA | --- | 1 | 1 | B.1.577 | 0.000687 |
ORF1ab/nsp3 | 109 | P109L | cCa | cTa | 1 | 1 | B.1.595.4 | 0.007299 |
ORF1ab/nsp3 | 109 | P109P | ccA | ccC | 1 | 1 | B.1.599 | 0.00365 |
ORF1ab/nsp3 | 109 | P109T | Cca | Aca | 1 | 1 | B.1.609 | 0.000479 |
ORF1ab/nsp3 | 109 | P109del | CCA | --- | 1 | 1 | B.1.617.2 | 0.000004 |
ORF1ab/nsp3 | 109 | P109L | cCa | cTa | 1 | 1 | B.1.623 | 0.000536 |
ORF1ab/nsp3 | 109 | P109L | cCa | cTa | 1 | 1 | B.1.626 | 0.005714 |
ORF1ab/nsp3 | 109 | P109P | ccA | ccG | 1 | 1 | B.1.637 | 0.000073 |
ORF1ab/nsp3 | 109 | P109L | cCa | cTa | 1 | 1 | B.1.9.4 | 0.006135 |
ORF1ab/nsp3 | 109 | P109L | cCa | cTa | 1 | 1 | B.40 | 0.000364 |
ORF1ab/nsp3 | 109 | P109P | ccA | ccT | 1 | 1 | B.56 | 0.028571 |
ORF1ab/nsp3 | 109 | P109L | cCa | cTa | 1 | 1 | B.6 | 0.00091 |
ORF1ab/nsp3 | 109 | P109P | ccA | ccG | 1 | 1 | B.6.6 | 0.000889 |
ORF1ab/nsp3 | 109 | P109S | Cca | Tca | 1 | 1 | C.35 | 0.000774 |
ORF1ab/nsp3 | 109 | P109P | ccA | ccG | 1 | 1 | C.36.3 | 0.000567 |
ORF1ab/nsp3 | 109 | P109A | Cca | Gca | 1 | 1 | C.37.1 | 0.002618 |
ORF1ab/nsp3 | 109 | P109P | ccA | ccG | 1 | 1 | N.8 | 0.03125 |
ORF1ab/nsp3 | 109 | P109del2 | CCA | --N | 1 | 1 | P.1 | 0.000016 |
ORF1ab/nsp3 | 109 | P109del | CCA | --- | 1 | 1 | P.1 | 0.000016 |
ORF1ab/nsp3 | 109 | P109L | cCa | cTa | 1 | 1 | P.1.1 | 0.000318 |
ORF1ab/nsp3 | 109 | P109S | Cca | Tca | 1 | 1 | P.1.12 | 0.000484 |
ORF1ab/nsp3 | 109 | P109A | Cca | Gca | 1 | 1 | P.1.17 | 0.000162 |
ORF1ab/nsp3 | 109 | P109L | cCa | cTa | 1 | 1 | P.1.2 | 0.001156 |
ORF1ab/nsp3 | 109 | P109L | cCa | cTa | 1 | 1 | P.1.4 | 0.000977 |
ORF1ab/nsp3 | 109 | P109L | cCa | cTa | 1 | 1 | P.1.9 | 0.004808 |
ORF1ab/nsp3 | 109 | P109S | Cca | Tca | 1 | 1 | P.2 | 0.000187 |
ORF1ab/nsp3 | 109 | P109L | cCa | cTa | 1 | 1 | P.2 | 0.000187 |
ORF1ab/nsp3 | 109 | P109L | cCa | cTa | 1 | 1 | P.3 | 0.001595 |
ORF1ab/nsp3 | 109 | P109S | Cca | Tca | 1 | 1 | P.7 | 0.004367 |
ORF1ab/nsp3 | 109 | P109P | ccA | ccT | 1 | 1 | Q.4 | 0.000455 |
ORF1ab/nsp3 | 109 | P109S | Cca | Tca | 1 | 1 | Q.8 | 0.000165 |
ORF1ab/nsp3 | 109 | P109del1 | ccA | cc- | 1 | 1 | R.1 | 0.00009 |
ORF1ab/nsp3 | 109 | P109S | Cca | Tca | 1 | 1 | R.1 | 0.00009 |
ORF1ab/nsp3 | 109 | P109S | Cca | Tca | 1 | 1 | U.3 | 0.003861 |
ORF1ab/nsp3 | 109 | P109L | cCa | cTa | 1 | 1 | Z.1 | 0.00289 |
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CoV-GLUE is still in development. CoV-GLUE was originally developed as part of COG-UK by Josh Singer using the GLUE framework at the MRC-University of Glasgow Centre for Virus Research (CVR). In 2021 it was redeveloped by Richard Orton to scale to the millions of genome sequences available. We acknowledge support from the MRC (MC_UU_12014/12), WT (220977/Z/20/Z) and UKRI G2P (MR/W005611/1). Please contact Richard Orton with any queries: Richard.Orton@glasgow.ac.uk
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