CoV-GLUE | Mutations | Mutation

CoV-GLUE Mutation: ORF = ORF1ab/nsp3 : CodonNum = 109

Details of the codons used for the mutation across all lineages (CodonProp is the proportion each codon is used for this AA mutation):

ORFCodonNumMutORF1abMutMutTypeRefCodonMutCodonAACountCodonCountCodonPropGenome Position
ORF1ab/nsp3109P109LP927LnonsyncCacTa803580330.9997513044-3046
ORF1ab/nsp3109P109LP927LnonsynCCaTTa803520.0002489113044-3046
ORF1ab/nsp3109P109PP927PsynccAccG153110120.6610063044-3046
ORF1ab/nsp3109P109PP927PsynccAccT15313760.2455913044-3046
ORF1ab/nsp3109P109PP927PsynccAccC15311430.0934033044-3046
ORF1ab/nsp3109P109SP927SnonsynCcaTca5545510.9945853044-3046
ORF1ab/nsp3109P109SP927SnonsynCcATcT55420.003610113044-3046
ORF1ab/nsp3109P109SP927SnonsynCcATcC55410.001805053044-3046
ORF1ab/nsp3109P109AP927AnonsynCcaGca959513044-3046
ORF1ab/nsp3109P109TP927TnonsynCcaAca454513044-3046
ORF1ab/nsp3109P109delP927deldelCCA---434313044-3046
ORF1ab/nsp3109P109QP927QnonsyncCacAa40370.9253044-3046
ORF1ab/nsp3109P109QP927QnonsyncCAcAG4030.0753044-3046
ORF1ab/nsp3109P109del1P927del1delCca-ca29240.8275863044-3046
ORF1ab/nsp3109P109del1P927del1delccAcc-2950.1724143044-3046
ORF1ab/nsp3109P109RP927RnonsyncCacGa222213044-3046
ORF1ab/nsp3109P109XP927XnonsynCCaTAa2213044-3046
ORF1ab/nsp3109P109del2P927del2delcCAc--210.53044-3046
ORF1ab/nsp3109P109del2P927del2delCCA--N210.53044-3046
ORF1ab/nsp3109P109FP927FnonsynCCATTT1113044-3046
ORF1ab/nsp3109P109YP927YnonsynCCATAT1113044-3046
ORF1ab/nsp3109P109VP927VnonsynCCAGTT1113044-3046
ORF1ab/nsp3109P109CP927CnonsynCCATGT1113044-3046

Details of the mutation no within lineages (LineageCodonProp is the proportion the codon is observed at, at this particular site, on each lineage):

ORFCodonNumMutRefCodonMutCodonCodonCountAACountLineageLineageCodonProp
ORF1ab/nsp3109P109LcCacTa80338035All0.001536
ORF1ab/nsp3109P109LCCaTTa28035All0
ORF1ab/nsp3109P109PccAccG10121531All0.000194
ORF1ab/nsp3109P109PccAccT3761531All0.000072
ORF1ab/nsp3109P109PccAccC1431531All0.000027
ORF1ab/nsp3109P109LcCacTa15171517B.1.1.70.001358
ORF1ab/nsp3109P109LcCacTa899899B.1.617.20.003385
ORF1ab/nsp3109P109LcCacTa789789AY.250.004746
ORF1ab/nsp3109P109SCcaTca551554All0.000105
ORF1ab/nsp3109P109SCcATcT2554All0
ORF1ab/nsp3109P109SCcATcC1554All0
ORF1ab/nsp3109P109PccAccG525528AY.1030.00326
ORF1ab/nsp3109P109PccAccT2528AY.1030.000012
ORF1ab/nsp3109P109PccAccC1528AY.1030.000006
ORF1ab/nsp3109P109LcCacTa419419AY.40.000652
ORF1ab/nsp3109P109LcCacTa298298B.1.5770.204811
ORF1ab/nsp3109P109LcCacTa284284AY.1030.001763
ORF1ab/nsp3109P109LcCacTa282282AY.430.001249
ORF1ab/nsp3109P109LcCacTa264264AY.440.001607
ORF1ab/nsp3109P109LcCacTa174174AY.30.001731
ORF1ab/nsp3109P109PccAccT126167B.1.1.70.000113
ORF1ab/nsp3109P109PccAccG41167B.1.1.70.000037
ORF1ab/nsp3109P109LcCacTa165165AY.9.20.00606
ORF1ab/nsp3109P109LcCacTa158158AY.390.003904
ORF1ab/nsp3109P109LcCacTa134134B.1.1770.001764
ORF1ab/nsp3109P109LcCacTa124124AY.1090.091716
ORF1ab/nsp3109P109PccAccG104121B.1.617.20.000392
ORF1ab/nsp3109P109PccAccT10121B.1.617.20.000038
ORF1ab/nsp3109P109PccAccC7121B.1.617.20.000026
ORF1ab/nsp3109P109SCcaTca112112B.1.1.70.0001
ORF1ab/nsp3109P109LcCacTa112112P.10.001764
ORF1ab/nsp3109P109LcCacTa109109AY.1020.00289
ORF1ab/nsp3109P109SCcaTca107107AY.1030.000664
ORF1ab/nsp3109P109LcCacTa107107B.1.20.000942
ORF1ab/nsp3109P109LcCacTa104104B.10.000953
ORF1ab/nsp3109P109LcCacTa101101B.1.10.001832
ORF1ab/nsp3109P109PccAccC9999AY.1090.073225
ORF1ab/nsp3109P109LcCacTa9797AY.880.085765
ORF1ab/nsp3109P109ACcaGca9595All0.000018
ORF1ab/nsp3109P109PccAccT7691AY.430.000337
ORF1ab/nsp3109P109PccAccG1591AY.430.000066
ORF1ab/nsp3109P109LcCacTa8787AY.260.002463
ORF1ab/nsp3109P109LcCacTa7878AY.5.10.293233
ORF1ab/nsp3109P109LcCacTa7070AY.610.007334
ORF1ab/nsp3109P109LcCacTa6666B.1.5260.001551
ORF1ab/nsp3109P109PccAccT3052AY.40.000047
ORF1ab/nsp3109P109PccAccG1752AY.40.000026
ORF1ab/nsp3109P109PccAccC552AY.40.000008
ORF1ab/nsp3109P109LcCacTa4949B.1.177.630.132432
ORF1ab/nsp3109P109LcCacTa4747B.1.6210.00416
ORF1ab/nsp3109P109LcCacTa4646AY.200.001788
ORF1ab/nsp3109P109LcCacTa4646B.1.2840.605263
ORF1ab/nsp3109P109TCcaAca4545All0.000009
ORF1ab/nsp3109P109LcCacTa4545AY.50.000929
ORF1ab/nsp3109P109LcCacTa4444AY.4.20.000954
ORF1ab/nsp3109P109delCCA---4343All0.000008
ORF1ab/nsp3109P109LcCacTa4141R.10.00369
ORF1ab/nsp3109P109QcCacAa3740All0.000007
ORF1ab/nsp3109P109QcCAcAG340All0.000001
ORF1ab/nsp3109P109ACcaGca4040AY.40.000062
ORF1ab/nsp3109P109LcCacTa3939AY.116.10.012146
ORF1ab/nsp3109P109LcCacTa3838B.1.2340.005014
ORF1ab/nsp3109P109PccAccG2837P.10.000441
ORF1ab/nsp3109P109PccAccT737P.10.00011
ORF1ab/nsp3109P109PccAccC237P.10.000032
ORF1ab/nsp3109P109PccAccT1535AY.250.00009
ORF1ab/nsp3109P109PccAccG1535AY.250.00009
ORF1ab/nsp3109P109PccAccC535AY.250.00003
ORF1ab/nsp3109P109SCcaTca3434AY.40.000053
ORF1ab/nsp3109P109LcCacTa3232AY.470.000995
ORF1ab/nsp3109P109ACcaGca3232B.1.1770.000421
ORF1ab/nsp3109P109LcCacTa3131B.1.438.10.003325
ORF1ab/nsp3109P109LcCacTa3030B.1.1600.000936
ORF1ab/nsp3109P109LcCacTa3030B.1.4290.000706
ORF1ab/nsp3109P109SCcaTca3030B.1.617.20.000113
ORF1ab/nsp3109P109del1Cca-ca2429All0.000005
ORF1ab/nsp3109P109del1ccAcc-529All0.000001
ORF1ab/nsp3109P109LcCacTa2929AY.420.001167
ORF1ab/nsp3109P109LcCacTa2929B.1.1.2140.001608
ORF1ab/nsp3109P109PccAccG2929B.1.1.480.083333
ORF1ab/nsp3109P109LcCacTa2828AY.750.001569
ORF1ab/nsp3109P109LcCacTa2525B.1.1.5190.000993
ORF1ab/nsp3109P109PccAccT2525P.1.170.004044
ORF1ab/nsp3109P109SCcaTca2323AY.30.000229
ORF1ab/nsp3109P109PccAccG1223AY.440.000073
ORF1ab/nsp3109P109PccAccT823AY.440.000049
ORF1ab/nsp3109P109PccAccC323AY.440.000018
ORF1ab/nsp3109P109SCcaTca2323AY.50.000475
ORF1ab/nsp3109P109PccAccG2323B.1.177.820.010979
ORF1ab/nsp3109P109LcCacTa2323B.1.36.220.027778
ORF1ab/nsp3109P109RcCacGa2222All0.000004
ORF1ab/nsp3109P109LcCacTa2222AY.1190.000777
ORF1ab/nsp3109P109LcCacTa2020AE.40.869565
ORF1ab/nsp3109P109LcCacTa2020AY.46.60.001444
ORF1ab/nsp3109P109SCcaTca1919AY.1180.00119
ORF1ab/nsp3109P109PccAccG1919B.1.4970.00598
ORF1ab/nsp3109P109RcCacGa1818AY.40.000028
ORF1ab/nsp3109P109LcCacTa1818B.1.1.3180.005432
ORF1ab/nsp3109P109PccAccT1517AY.1020.000398
ORF1ab/nsp3109P109PccAccG217AY.1020.000053
ORF1ab/nsp3109P109PccAccG1717B.1.214.30.121429
ORF1ab/nsp3109P109LcCacTa1717P.1.140.000813
ORF1ab/nsp3109P109LcCacTa1515AY.1170.001268
ORF1ab/nsp3109P109LcCacTa1515AY.290.000237
ORF1ab/nsp3109P109LcCacTa1515AY.980.001185
ORF1ab/nsp3109P109LcCacTa1515AY.99.20.001382
ORF1ab/nsp3109P109LcCacTa1515B.1.177.440.007784
ORF1ab/nsp3109P109LcCacTa1414AY.1000.000644
ORF1ab/nsp3109P109LcCacTa1414AY.1130.001993
ORF1ab/nsp3109P109LcCacTa1414AY.1200.000521
ORF1ab/nsp3109P109PccAccG914AY.30.00009
ORF1ab/nsp3109P109PccAccC314AY.30.00003
ORF1ab/nsp3109P109PccAccT214AY.30.00002
ORF1ab/nsp3109P109LcCacTa1414B.1.177.690.020772
ORF1ab/nsp3109P109LcCacTa1414B.1.2210.000994
ORF1ab/nsp3109P109LcCacTa1414B.1.2430.000974
ORF1ab/nsp3109P109PccAccG1314B.1.6210.001151
ORF1ab/nsp3109P109PccAccC114B.1.6210.000089
ORF1ab/nsp3109P109PccAccG1313A.10.003664
ORF1ab/nsp3109P109LcCacTa1313AY.460.001353
ORF1ab/nsp3109P109LcCacTa1313AY.920.003735
ORF1ab/nsp3109P109TCcaAca1313B.1.1.70.000012
ORF1ab/nsp3109P109LcCacTa1212AY.39.10.000475
ORF1ab/nsp3109P109QcCacAa1212B.1.1.70.000011
ORF1ab/nsp3109P109SCcaTca1111AY.1000.000506
ORF1ab/nsp3109P109SCcaTca1111AY.1110.002015
ORF1ab/nsp3109P109LcCacTa1111AY.300.004353
ORF1ab/nsp3109P109SCcaTca1111AY.440.000067
ORF1ab/nsp3109P109PccAccT611B.10.000055
ORF1ab/nsp3109P109PccAccG411B.10.000037
ORF1ab/nsp3109P109PccAccC111B.10.000009
ORF1ab/nsp3109P109LcCacTa1111B.1.1.3480.008758
ORF1ab/nsp3109P109LcCacTa1111B.1.1.3970.024775
ORF1ab/nsp3109P109LcCacTa1111B.1.177.600.002403
ORF1ab/nsp3109P109LcCacTa1111B.1.5170.004697
ORF1ab/nsp3109P109LcCacTa1010AY.370.003161
ORF1ab/nsp3109P109PccAccG910AY.4.20.000195
ORF1ab/nsp3109P109PccAccC110AY.4.20.000022
ORF1ab/nsp3109P109PccAccG1010AY.46.60.000722
ORF1ab/nsp3109P109PccAccT1010AY.720.013605
ORF1ab/nsp3109P109LcCacTa1010AY.75.10.001803
ORF1ab/nsp3109P109PccAccG1010B.1.20.000088
ORF1ab/nsp3109P109LcCacTa1010B.1.3110.002746
ORF1ab/nsp3109P109PccAccG1010B.1.4290.000235
ORF1ab/nsp3109P109LcCacTa1010B.1.5960.000871
ORF1ab/nsp3109P109SCcaTca910D.20.000675
ORF1ab/nsp3109P109SCcATcT110D.20.000075
ORF1ab/nsp3109P109LcCacTa99AY.230.000628
ORF1ab/nsp3109P109LcCacTa99AY.270.000582
ORF1ab/nsp3109P109PccAccT69AY.980.000474
ORF1ab/nsp3109P109PccAccG39AY.980.000237
ORF1ab/nsp3109P109PccAccG89B.1.10.000145
ORF1ab/nsp3109P109PccAccT19B.1.10.000018
ORF1ab/nsp3109P109LcCacTa99B.1.1.2220.001836
ORF1ab/nsp3109P109LcCacTa99B.1.1470.006803
ORF1ab/nsp3109P109LcCacTa99B.1.5250.001018
ORF1ab/nsp3109P109LcCacTa99B.1.910.018672
ORF1ab/nsp3109P109LcCacTa88AY.120.002528
ORF1ab/nsp3109P109PccAccG88AY.340.000776
ORF1ab/nsp3109P109LcCacTa88AY.340.000776
ORF1ab/nsp3109P109SCcaTca88AY.430.000035
ORF1ab/nsp3109P109LcCacTa78AY.9.10.000586
ORF1ab/nsp3109P109LCCaTTa18AY.9.10.000084
ORF1ab/nsp3109P109SCcaTca88B.1.1.3690.00357
ORF1ab/nsp3109P109LcCacTa88B.1.1.4320.010127
ORF1ab/nsp3109P109SCcaTca88B.1.20.00007
ORF1ab/nsp3109P109LcCacTa88B.1.2400.001725
ORF1ab/nsp3109P109PccAccG88B.1.351.30.007011
ORF1ab/nsp3109P109LcCacTa88B.1.360.001167
ORF1ab/nsp3109P109LcCacTa88B.440.8
ORF1ab/nsp3109P109LcCacTa88Q.70.008889
ORF1ab/nsp3109P109LcCacTa77AY.120.20.008997
ORF1ab/nsp3109P109TCcaAca77AY.30.00007
ORF1ab/nsp3109P109LcCacTa77AY.530.002013
ORF1ab/nsp3109P109LcCacTa77AY.540.000667
ORF1ab/nsp3109P109LcCacTa77C.370.000812
ORF1ab/nsp3109P109LcCacTa77Q.30.001015
ORF1ab/nsp3109P109PccAccC56AY.1000.00023
ORF1ab/nsp3109P109PccAccG16AY.1000.000046
ORF1ab/nsp3109P109LcCacTa66AY.1180.000376
ORF1ab/nsp3109P109LcCacTa66AY.130.000966
ORF1ab/nsp3109P109LcCacTa66AY.190.006842
ORF1ab/nsp3109P109SCcaTca66AY.230.000418
ORF1ab/nsp3109P109del1Cca-ca66AY.440.000037
ORF1ab/nsp3109P109LcCacTa66AY.5.40.00166
ORF1ab/nsp3109P109TCcaAca66B.1.1.4160.00543
ORF1ab/nsp3109P109LcCacTa66B.1.177.350.004147
ORF1ab/nsp3109P109del1Cca-ca56B.1.20.000044
ORF1ab/nsp3109P109del1ccAcc-16B.1.20.000009
ORF1ab/nsp3109P109LcCacTa66B.1.3510.000178
ORF1ab/nsp3109P109LcCacTa66D.20.00045
ORF1ab/nsp3109P109LcCacTa55AH.30.019011
ORF1ab/nsp3109P109PccAccG55AY.1110.000916
ORF1ab/nsp3109P109SCcaTca55AY.1190.000177
ORF1ab/nsp3109P109LcCacTa55AY.330.000334
ORF1ab/nsp3109P109SCcaTca55AY.750.00028
ORF1ab/nsp3109P109LcCacTa55AY.98.10.000242
ORF1ab/nsp3109P109delCCA---55B.10.000046
ORF1ab/nsp3109P109LcCacTa55B.1.1.2840.000537
ORF1ab/nsp3109P109SCcaTca55B.1.1.3740.011876
ORF1ab/nsp3109P109LcCacTa55B.1.1.890.030303
ORF1ab/nsp3109P109LcCacTa55B.1.177.820.002387
ORF1ab/nsp3109P109SCcaTca55B.1.2210.000355
ORF1ab/nsp3109P109LcCacTa55B.1.2580.000333
ORF1ab/nsp3109P109LcCacTa55B.1.4990.005252
ORF1ab/nsp3109P109PccAccT35B.1.5260.000071
ORF1ab/nsp3109P109PccAccG25B.1.5260.000047
ORF1ab/nsp3109P109ACcaGca55B.1.617.20.000019
ORF1ab/nsp3109P109LcCacTa55N.40.021277
ORF1ab/nsp3109P109SCcaTca55P.10.000079
ORF1ab/nsp3109P109LcCacTa55P.1.120.00242
ORF1ab/nsp3109P109LcCacTa55Q.80.000825
ORF1ab/nsp3109P109delCCA---440.222222
ORF1ab/nsp3109P109SCcaTca44AY.1020.000106
ORF1ab/nsp3109P109LcCacTa44AY.1140.000924
ORF1ab/nsp3109P109LcCacTa44AY.140.000352
ORF1ab/nsp3109P109SCcaTca44AY.150.008889
ORF1ab/nsp3109P109TCcaAca44AY.230.000279
ORF1ab/nsp3109P109PccAccG24AY.330.000134
ORF1ab/nsp3109P109PccAccT14AY.330.000067
ORF1ab/nsp3109P109PccAccC14AY.330.000067
ORF1ab/nsp3109P109QcCacAa44AY.40.000006
ORF1ab/nsp3109P109LcCacTa44AY.4.50.00043
ORF1ab/nsp3109P109LcCacTa44AY.450.000487
ORF1ab/nsp3109P109LcCacTa44AY.46.40.000658
ORF1ab/nsp3109P109LcCacTa44AY.7.10.000451
ORF1ab/nsp3109P109LcCacTa44AY.90.00027
ORF1ab/nsp3109P109LcCacTa44B.1.1.2050.01487
ORF1ab/nsp3109P109LcCacTa44B.1.1.500.002716
ORF1ab/nsp3109P109SCcaTca44B.1.1.710.024242
ORF1ab/nsp3109P109LcCacTa44B.1.110.30.002874
ORF1ab/nsp3109P109PccAccG44B.1.1770.000053
ORF1ab/nsp3109P109LcCacTa44B.1.177.620.004768
ORF1ab/nsp3109P109LcCacTa44B.1.177.810.000757
ORF1ab/nsp3109P109LcCacTa44B.1.36.210.008639
ORF1ab/nsp3109P109LcCacTa44B.1.617.10.000516
ORF1ab/nsp3109P109QcCacAa44B.1.617.20.000015
ORF1ab/nsp3109P109LcCacTa44Q.10.000505
ORF1ab/nsp3109P109SCcaTca33A0.001161
ORF1ab/nsp3109P109LcCacTa33A.2.50.001497
ORF1ab/nsp3109P109ACcaGca33AY.1020.00008
ORF1ab/nsp3109P109SCcaTca23AY.1050.001286
ORF1ab/nsp3109P109SCcATcT13AY.1050.000643
ORF1ab/nsp3109P109PccAccG33AY.1190.000106
ORF1ab/nsp3109P109LcCacTa33AY.120.10.000963
ORF1ab/nsp3109P109del1Cca-ca33AY.120.10.000963
ORF1ab/nsp3109P109LcCacTa33AY.1210.000406
ORF1ab/nsp3109P109SCcaTca33AY.140.000264
ORF1ab/nsp3109P109SCcaTca33AY.250.000018
ORF1ab/nsp3109P109LcCacTa33AY.360.000445
ORF1ab/nsp3109P109delCCA---33AY.40.000005
ORF1ab/nsp3109P109SCcaTca33AY.4.20.000065
ORF1ab/nsp3109P109QcCacAa33AY.430.000013
ORF1ab/nsp3109P109SCcaTca33AY.480.001395
ORF1ab/nsp3109P109LcCacTa33AY.690.00056
ORF1ab/nsp3109P109SCcaTca33AY.980.000237
ORF1ab/nsp3109P109LcCacTa33AY.99.10.004658
ORF1ab/nsp3109P109SCcaTca33B.10.000027
ORF1ab/nsp3109P109LcCacTa33B.1.1.3160.002775
ORF1ab/nsp3109P109delCCA---33B.1.1.330.001263
ORF1ab/nsp3109P109LcCacTa33B.1.1.3420.1875
ORF1ab/nsp3109P109LcCacTa33B.1.1.4480.006098
ORF1ab/nsp3109P109LcCacTa33B.1.1.510.005155
ORF1ab/nsp3109P109delCCA---33B.1.1.70.000003
ORF1ab/nsp3109P109PccAccT23B.1.177.570.000562
ORF1ab/nsp3109P109PccAccG13B.1.177.570.000281
ORF1ab/nsp3109P109LcCacTa33B.1.177.730.001699
ORF1ab/nsp3109P109LcCacTa33B.1.2790.001541
ORF1ab/nsp3109P109PccAccG33B.1.3510.000089
ORF1ab/nsp3109P109SCcaTca33B.1.360.000438
ORF1ab/nsp3109P109LcCacTa33B.1.4280.003061
ORF1ab/nsp3109P109LcCacTa33B.1.4970.000944
ORF1ab/nsp3109P109SCcaTca33B.1.5960.000261
ORF1ab/nsp3109P109SCcaTca33B.1.617.10.000387
ORF1ab/nsp3109P109del1Cca-ca23B.1.617.20.000008
ORF1ab/nsp3109P109del1ccAcc-13B.1.617.20.000004
ORF1ab/nsp3109P109LcCacTa33B.1.6180.012097
ORF1ab/nsp3109P109PccAccG33C.160.003181
ORF1ab/nsp3109P109LcCacTa33C.360.002732
ORF1ab/nsp3109P109SCcaTca33C.370.000348
ORF1ab/nsp3109P109PccAccT33D.20.000225
ORF1ab/nsp3109P109LcCacTa33P.1.150.000697
ORF1ab/nsp3109P109LcCacTa33P.1.170.000485
ORF1ab/nsp3109P109LcCacTa33P.70.0131
ORF1ab/nsp3109P109PccAccT23Q.80.00033
ORF1ab/nsp3109P109PccAccG13Q.80.000165
ORF1ab/nsp3109P109ACcaGca220.111111
ORF1ab/nsp3109P109XCCaTAa22All0
ORF1ab/nsp3109P109del2CCA--N12All0
ORF1ab/nsp3109P109del2cCAc--12All0
ORF1ab/nsp3109P109LcCacTa22AY.100.00106
ORF1ab/nsp3109P109del1Cca-ca22AY.1030.000012
ORF1ab/nsp3109P109XCCaTAa22AY.1050.001286
ORF1ab/nsp3109P109LcCacTa22AY.1110.000366
ORF1ab/nsp3109P109LcCacTa22AY.1160.000574
ORF1ab/nsp3109P109PccAccG22AY.1160.000574
ORF1ab/nsp3109P109SCcaTca22AY.1170.000169
ORF1ab/nsp3109P109ACcaGca22AY.1190.000071
ORF1ab/nsp3109P109PccAccT22AY.1210.000271
ORF1ab/nsp3109P109PccAccC12AY.200.000039
ORF1ab/nsp3109P109PccAccT12AY.200.000039
ORF1ab/nsp3109P109SCcaTca22AY.260.000057
ORF1ab/nsp3109P109PccAccG12AY.260.000028
ORF1ab/nsp3109P109PccAccC12AY.260.000028
ORF1ab/nsp3109P109PccAccT22AY.290.000032
ORF1ab/nsp3109P109del1Cca-ca22AY.30.00002
ORF1ab/nsp3109P109LcCacTa22AY.320.001065
ORF1ab/nsp3109P109ACcaGca22AY.4.20.000043
ORF1ab/nsp3109P109TCcaAca22AY.420.00008
ORF1ab/nsp3109P109QcCacAa22AY.440.000012
ORF1ab/nsp3109P109PccAccT12AY.470.000031
ORF1ab/nsp3109P109PccAccG12AY.470.000031
ORF1ab/nsp3109P109LcCacTa22AY.550.001835
ORF1ab/nsp3109P109PccAccC12AY.610.000105
ORF1ab/nsp3109P109PccAccG12AY.610.000105
ORF1ab/nsp3109P109LcCacTa22AY.70.000392
ORF1ab/nsp3109P109LcCacTa22AY.7.20.001119
ORF1ab/nsp3109P109SCcaTca22AY.730.001331
ORF1ab/nsp3109P109LcCacTa22AY.740.000231
ORF1ab/nsp3109P109LcCacTa22AY.790.002421
ORF1ab/nsp3109P109LcCacTa22AY.80.001212
ORF1ab/nsp3109P109LcCacTa22AY.900.001369
ORF1ab/nsp3109P109PccAccT12AY.950.000761
ORF1ab/nsp3109P109PccAccC12AY.950.000761
ORF1ab/nsp3109P109LcCacTa22AY.990.002099
ORF1ab/nsp3109P109LcCacTa22AZ.10.001735
ORF1ab/nsp3109P109PccAccT12B0.000128
ORF1ab/nsp3109P109PccAccG12B0.000128
ORF1ab/nsp3109P109TCcaAca22B.10.000018
ORF1ab/nsp3109P109SCcaTca22B.1.10.000036
ORF1ab/nsp3109P109delCCA---22B.1.10.000036
ORF1ab/nsp3109P109LcCacTa22B.1.1.10.000653
ORF1ab/nsp3109P109PccAccT22B.1.1.2070.002364
ORF1ab/nsp3109P109LcCacTa22B.1.1.2070.002364
ORF1ab/nsp3109P109LcCacTa22B.1.1.2300.018349
ORF1ab/nsp3109P109LcCacTa22B.1.1.3120.003824
ORF1ab/nsp3109P109LcCacTa22B.1.1.3170.000823
ORF1ab/nsp3109P109delCCA---22B.1.1.3480.001592
ORF1ab/nsp3109P109LcCacTa22B.1.1.3720.001377
ORF1ab/nsp3109P109LcCacTa22B.1.1.3850.008929
ORF1ab/nsp3109P109LcCacTa22B.1.1.390.001019
ORF1ab/nsp3109P109SCcaTca22B.1.1.4110.029412
ORF1ab/nsp3109P109LcCacTa22B.1.1.4340.000697
ORF1ab/nsp3109P109SCcaTca22B.1.1.5190.000079
ORF1ab/nsp3109P109del1ccAcc-12B.1.1.70.000001
ORF1ab/nsp3109P109del1Cca-ca12B.1.1.70.000001
ORF1ab/nsp3109P109SCcaTca22B.1.1600.000062
ORF1ab/nsp3109P109LcCacTa22B.1.160.70.004158
ORF1ab/nsp3109P109delCCA---22B.1.1770.000026
ORF1ab/nsp3109P109LcCacTa22B.1.177.240.002591
ORF1ab/nsp3109P109LcCacTa22B.1.177.500.00939
ORF1ab/nsp3109P109LcCacTa22B.1.177.70.00033
ORF1ab/nsp3109P109LcCacTa22B.1.177.860.000367
ORF1ab/nsp3109P109delCCA---22B.1.20.000018
ORF1ab/nsp3109P109TCcaAca22B.1.20.000018
ORF1ab/nsp3109P109LcCacTa22B.1.214.20.001199
ORF1ab/nsp3109P109LcCacTa22B.1.2220.003384
ORF1ab/nsp3109P109LcCacTa22B.1.2320.001075
ORF1ab/nsp3109P109PccAccG22B.1.2430.000139
ORF1ab/nsp3109P109SCcaTca22B.1.2430.000139
ORF1ab/nsp3109P109LcCacTa22B.1.2980.004228
ORF1ab/nsp3109P109LcCacTa22B.1.36.80.002
ORF1ab/nsp3109P109LcCacTa22B.1.3690.00057
ORF1ab/nsp3109P109LcCacTa22B.1.4260.002018
ORF1ab/nsp3109P109LcCacTa22B.1.4270.000101
ORF1ab/nsp3109P109SCcaTca22B.1.4270.000101
ORF1ab/nsp3109P109SCcaTca22B.1.4290.000047
ORF1ab/nsp3109P109SCcaTca22B.1.4360.002058
ORF1ab/nsp3109P109LcCacTa22B.1.466.20.000782
ORF1ab/nsp3109P109PccAccG22B.1.5170.000854
ORF1ab/nsp3109P109LcCacTa22B.1.5610.000794
ORF1ab/nsp3109P109LcCacTa22B.1.5950.000522
ORF1ab/nsp3109P109PccAccT22B.1.6090.000959
ORF1ab/nsp3109P109LcCacTa22B.1.6090.000959
ORF1ab/nsp3109P109LcCacTa22B.1.6280.000705
ORF1ab/nsp3109P109LcCacTa22B.1.6360.013423
ORF1ab/nsp3109P109LcCacTa22B.1.6370.000146
ORF1ab/nsp3109P109LcCacTa22C.160.002121
ORF1ab/nsp3109P109LcCacTa22N.50.003534
ORF1ab/nsp3109P109delCCA---22N.60.014184
ORF1ab/nsp3109P109PccAccG11A0.000387
ORF1ab/nsp3109P109LcCacTa11A.2.20.001689
ORF1ab/nsp3109P109PccAccG11A.2.5.20.001572
ORF1ab/nsp3109P109PccAccT11A.270.001656
ORF1ab/nsp3109P109PccAccG11A.60.005128
ORF1ab/nsp3109P109LcCacTa11AD.20.000219
ORF1ab/nsp3109P109LcCacTa11AE.80.000489
ORF1ab/nsp3109P109FCCATTT11All0
ORF1ab/nsp3109P109CCCATGT11All0
ORF1ab/nsp3109P109YCCATAT11All0
ORF1ab/nsp3109P109VCCAGTT11All0
ORF1ab/nsp3109P109LcCacTa11AS.10.009524
ORF1ab/nsp3109P109PccAccG11AU.20.002421
ORF1ab/nsp3109P109VCCAGTT11AY.1000.000046
ORF1ab/nsp3109P109QcCacAa11AY.1030.000006
ORF1ab/nsp3109P109ACcaGca11AY.1030.000006
ORF1ab/nsp3109P109YCCATAT11AY.1050.000643
ORF1ab/nsp3109P109QcCacAa11AY.1050.000643
ORF1ab/nsp3109P109LCCaTTa11AY.1050.000643
ORF1ab/nsp3109P109FCCATTT11AY.1050.000643
ORF1ab/nsp3109P109LcCacTa11AY.1060.000335
ORF1ab/nsp3109P109PccAccT11AY.1060.000335
ORF1ab/nsp3109P109LcCacTa11AY.1070.000466
ORF1ab/nsp3109P109SCcATcC11AY.1090.00074
ORF1ab/nsp3109P109LcCacTa11AY.110.001339
ORF1ab/nsp3109P109LcCacTa11AY.1100.000113
ORF1ab/nsp3109P109ACcaGca11AY.1130.000142
ORF1ab/nsp3109P109PccAccT11AY.1170.000085
ORF1ab/nsp3109P109PccAccC11AY.1180.000063
ORF1ab/nsp3109P109del1Cca-ca11AY.1200.000037
ORF1ab/nsp3109P109SCcaTca11AY.1200.000037
ORF1ab/nsp3109P109PccAccG11AY.1200.000037
ORF1ab/nsp3109P109LcCacTa11AY.120.2.10.000498
ORF1ab/nsp3109P109QcCacAa11AY.1210.000135
ORF1ab/nsp3109P109PccAccT11AY.130.000161
ORF1ab/nsp3109P109ACcaGca11AY.130.000161
ORF1ab/nsp3109P109PccAccG11AY.140.000088
ORF1ab/nsp3109P109LcCacTa11AY.160.00038
ORF1ab/nsp3109P109SCcaTca11AY.20.000356
ORF1ab/nsp3109P109PccAccG11AY.230.00007
ORF1ab/nsp3109P109QcCacAa11AY.250.000006
ORF1ab/nsp3109P109ACcaGca11AY.250.000006
ORF1ab/nsp3109P109delCCA---11AY.250.000006
ORF1ab/nsp3109P109del1Cca-ca11AY.250.000006
ORF1ab/nsp3109P109delCCA---11AY.260.000028
ORF1ab/nsp3109P109LcCacTa11AY.280.00189
ORF1ab/nsp3109P109SCcaTca11AY.290.000016
ORF1ab/nsp3109P109del2cCAc--11AY.30.00001
ORF1ab/nsp3109P109QcCAcAG11AY.30.00001
ORF1ab/nsp3109P109LcCacTa11AY.3.10.000085
ORF1ab/nsp3109P109delCCA---11AY.300.000396
ORF1ab/nsp3109P109LcCacTa11AY.350.000233
ORF1ab/nsp3109P109SCcaTca11AY.370.000316
ORF1ab/nsp3109P109LcCacTa11AY.380.000499
ORF1ab/nsp3109P109SCcaTca11AY.390.000025
ORF1ab/nsp3109P109PccAccG11AY.390.000025
ORF1ab/nsp3109P109PccAccG11AY.39.10.00004
ORF1ab/nsp3109P109LcCacTa11AY.4.2.10.000149
ORF1ab/nsp3109P109SCcaTca11AY.4.40.000409
ORF1ab/nsp3109P109SCcaTca11AY.4.50.000107
ORF1ab/nsp3109P109delCCA---11AY.420.00004
ORF1ab/nsp3109P109delCCA---11AY.430.000004
ORF1ab/nsp3109P109ACcaGca11AY.430.000004
ORF1ab/nsp3109P109CCCATGT11AY.430.000004
ORF1ab/nsp3109P109RcCacGa11AY.430.000004
ORF1ab/nsp3109P109TCcaAca11AY.430.000004
ORF1ab/nsp3109P109delCCA---11AY.460.000104
ORF1ab/nsp3109P109QcCacAa11AY.46.20.000635
ORF1ab/nsp3109P109SCcaTca11AY.46.40.000165
ORF1ab/nsp3109P109LcCacTa11AY.46.50.000198
ORF1ab/nsp3109P109PccAccG11AY.46.50.000198
ORF1ab/nsp3109P109TCcaAca11AY.46.60.000072
ORF1ab/nsp3109P109TCcaAca11AY.470.000031
ORF1ab/nsp3109P109delCCA---11AY.50.000021
ORF1ab/nsp3109P109LcCacTa11AY.5.30.000337
ORF1ab/nsp3109P109SCcaTca11AY.500.000799
ORF1ab/nsp3109P109SCcaTca11AY.530.000288
ORF1ab/nsp3109P109del1Cca-ca11AY.540.000095
ORF1ab/nsp3109P109PccAccT11AY.550.000917
ORF1ab/nsp3109P109PccAccT11AY.560.001605
ORF1ab/nsp3109P109LcCacTa11AY.590.00053
ORF1ab/nsp3109P109PccAccG11AY.590.00053
ORF1ab/nsp3109P109del1ccAcc-11AY.650.000533
ORF1ab/nsp3109P109LcCacTa11AY.680.000274
ORF1ab/nsp3109P109QcCacAa11AY.70.000196
ORF1ab/nsp3109P109LcCacTa11AY.710.000475
ORF1ab/nsp3109P109SCcaTca11AY.740.000116
ORF1ab/nsp3109P109LcCacTa11AY.770.001127
ORF1ab/nsp3109P109LcCacTa11AY.780.001541
ORF1ab/nsp3109P109SCcaTca11AY.790.001211
ORF1ab/nsp3109P109LcCacTa11AY.800.001129
ORF1ab/nsp3109P109PccAccC11AY.820.001357
ORF1ab/nsp3109P109LcCacTa11AY.840.000437
ORF1ab/nsp3109P109LcCacTa11AY.850.000427
ORF1ab/nsp3109P109LcCacTa11AY.870.000833
ORF1ab/nsp3109P109PccAccG11AY.9.10.000084
ORF1ab/nsp3109P109QcCAcAG11AY.9.20.000037
ORF1ab/nsp3109P109LcCacTa11AY.930.000273
ORF1ab/nsp3109P109PccAccG11AY.960.002075
ORF1ab/nsp3109P109QcCacAa11AY.980.000079
ORF1ab/nsp3109P109RcCacGa11AY.990.001049
ORF1ab/nsp3109P109RcCacGa11AY.99.20.000092
ORF1ab/nsp3109P109LcCacTa11AZ.20.000821
ORF1ab/nsp3109P109LcCacTa11B0.000128
ORF1ab/nsp3109P109PccAccT11B.1.1.1210.002427
ORF1ab/nsp3109P109LcCacTa11B.1.1.1700.001247
ORF1ab/nsp3109P109LcCacTa11B.1.1.1980.001468
ORF1ab/nsp3109P109LcCacTa11B.1.1.2160.00089
ORF1ab/nsp3109P109SCcaTca11B.1.1.2160.00089
ORF1ab/nsp3109P109PccAccT11B.1.1.2410.00207
ORF1ab/nsp3109P109LcCacTa11B.1.1.250.000569
ORF1ab/nsp3109P109LcCacTa11B.1.1.2530.002506
ORF1ab/nsp3109P109LcCacTa11B.1.1.2770.000759
ORF1ab/nsp3109P109LcCacTa11B.1.1.280.000311
ORF1ab/nsp3109P109LcCacTa11B.1.1.2860.002899
ORF1ab/nsp3109P109LcCacTa11B.1.1.2890.002083
ORF1ab/nsp3109P109PccAccG11B.1.1.2910.000742
ORF1ab/nsp3109P109LcCacTa11B.1.1.2940.001266
ORF1ab/nsp3109P109LcCacTa11B.1.1.3050.003861
ORF1ab/nsp3109P109LcCacTa11B.1.1.3060.000438
ORF1ab/nsp3109P109LcCacTa11B.1.1.3320.03125
ORF1ab/nsp3109P109SCcaTca11B.1.1.3440.010753
ORF1ab/nsp3109P109LcCacTa11B.1.1.3640.066667
ORF1ab/nsp3109P109delCCA---11B.1.1.3690.000446
ORF1ab/nsp3109P109PccAccC11B.1.1.370.000193
ORF1ab/nsp3109P109LcCacTa11B.1.1.370.000193
ORF1ab/nsp3109P109SCcaTca11B.1.1.3890.006061
ORF1ab/nsp3109P109SCcaTca11B.1.1.390.00051
ORF1ab/nsp3109P109LcCacTa11B.1.1.3980.003226
ORF1ab/nsp3109P109LcCacTa11B.1.1.4200.001006
ORF1ab/nsp3109P109SCcaTca11B.1.1.4340.000349
ORF1ab/nsp3109P109LcCacTa11B.1.1.4400.011765
ORF1ab/nsp3109P109PccAccC11B.1.1.500.000679
ORF1ab/nsp3109P109SCcaTca11B.1.1.5060.037037
ORF1ab/nsp3109P109PccAccG11B.1.1.550.012987
ORF1ab/nsp3109P109PccAccT11B.1.1.630.000386
ORF1ab/nsp3109P109LcCacTa11B.1.1.700.000341
ORF1ab/nsp3109P109LcCacTa11B.1.1.710.006061
ORF1ab/nsp3109P109TCcaAca11B.1.1.710.006061
ORF1ab/nsp3109P109LcCacTa11B.1.1110.001175
ORF1ab/nsp3109P109LcCacTa11B.1.1120.005181
ORF1ab/nsp3109P109QcCacAa11B.1.1770.000013
ORF1ab/nsp3109P109TCcaAca11B.1.1770.000013
ORF1ab/nsp3109P109SCcaTca11B.1.1770.000013
ORF1ab/nsp3109P109LcCacTa11B.1.177.100.000878
ORF1ab/nsp3109P109LcCacTa11B.1.177.120.000152
ORF1ab/nsp3109P109LcCacTa11B.1.177.150.000631
ORF1ab/nsp3109P109LcCacTa11B.1.177.160.000664
ORF1ab/nsp3109P109LcCacTa11B.1.177.170.000821
ORF1ab/nsp3109P109SCcaTca11B.1.177.170.000821
ORF1ab/nsp3109P109LcCacTa11B.1.177.190.001431
ORF1ab/nsp3109P109LcCacTa11B.1.177.330.001645
ORF1ab/nsp3109P109LcCacTa11B.1.177.40.000211
ORF1ab/nsp3109P109PccAccG11B.1.177.400.005155
ORF1ab/nsp3109P109LcCacTa11B.1.177.410.0025
ORF1ab/nsp3109P109SCcaTca11B.1.177.440.000519
ORF1ab/nsp3109P109TCcaAca11B.1.177.440.000519
ORF1ab/nsp3109P109PccAccG11B.1.177.480.003125
ORF1ab/nsp3109P109LcCacTa11B.1.177.480.003125
ORF1ab/nsp3109P109SCcaTca11B.1.177.50.001242
ORF1ab/nsp3109P109ACcaGca11B.1.177.620.001192
ORF1ab/nsp3109P109SCcaTca11B.1.177.650.000665
ORF1ab/nsp3109P109LcCacTa11B.1.177.790.002342
ORF1ab/nsp3109P109LcCacTa11B.1.177.80.000752
ORF1ab/nsp3109P109QcCAcAG11B.1.20.000009
ORF1ab/nsp3109P109QcCacAa11B.1.2060.000816
ORF1ab/nsp3109P109PccAccG11B.1.2140.003663
ORF1ab/nsp3109P109LcCacTa11B.1.2180.005155
ORF1ab/nsp3109P109LcCacTa11B.1.2190.009434
ORF1ab/nsp3109P109SCcaTca11B.1.2340.000132
ORF1ab/nsp3109P109LcCacTa11B.1.2370.004975
ORF1ab/nsp3109P109PccAccT11B.1.2580.000067
ORF1ab/nsp3109P109LcCacTa11B.1.258.170.000104
ORF1ab/nsp3109P109QcCacAa11B.1.2840.013158
ORF1ab/nsp3109P109LcCacTa11B.1.3190.003049
ORF1ab/nsp3109P109SCcaTca11B.1.3280.03125
ORF1ab/nsp3109P109LcCacTa11B.1.3480.018182
ORF1ab/nsp3109P109delCCA---11B.1.3490.000715
ORF1ab/nsp3109P109RcCacGa11B.1.3510.00003
ORF1ab/nsp3109P109LcCacTa11B.1.351.20.000303
ORF1ab/nsp3109P109LcCacTa11B.1.3560.001727
ORF1ab/nsp3109P109LcCacTa11B.1.36.10.00114
ORF1ab/nsp3109P109LcCacTa11B.1.36.100.004785
ORF1ab/nsp3109P109LcCacTa11B.1.36.180.00042
ORF1ab/nsp3109P109LcCacTa11B.1.36.280.005747
ORF1ab/nsp3109P109LcCacTa11B.1.36.290.000517
ORF1ab/nsp3109P109PccAccG11B.1.36.70.004
ORF1ab/nsp3109P109QcCacAa11B.1.3690.000285
ORF1ab/nsp3109P109SCcaTca11B.1.3750.00082
ORF1ab/nsp3109P109SCcaTca11B.1.380.032258
ORF1ab/nsp3109P109LcCacTa11B.1.3990.001934
ORF1ab/nsp3109P109LcCacTa11B.1.4040.001302
ORF1ab/nsp3109P109LcCacTa11B.1.4090.000781
ORF1ab/nsp3109P109LcCacTa11B.1.4160.001269
ORF1ab/nsp3109P109delCCA---11B.1.416.10.001563
ORF1ab/nsp3109P109SCcaTca11B.1.4260.001009
ORF1ab/nsp3109P109PccAccG11B.1.4270.00005
ORF1ab/nsp3109P109TCcaAca11B.1.4270.00005
ORF1ab/nsp3109P109ACcaGca11B.1.4270.00005
ORF1ab/nsp3109P109delCCA---11B.1.4290.000024
ORF1ab/nsp3109P109TCcaAca11B.1.4290.000024
ORF1ab/nsp3109P109PccAccG11B.1.4330.003195
ORF1ab/nsp3109P109LcCacTa11B.1.4360.001029
ORF1ab/nsp3109P109PccAccT11B.1.438.10.000107
ORF1ab/nsp3109P109LcCacTa11B.1.4700.001404
ORF1ab/nsp3109P109QcCacAa11B.1.4700.001404
ORF1ab/nsp3109P109LcCacTa11B.1.5230.002451
ORF1ab/nsp3109P109SCcaTca11B.1.5250.000113
ORF1ab/nsp3109P109LcCacTa11B.1.5380.008065
ORF1ab/nsp3109P109LcCacTa11B.1.5430.01
ORF1ab/nsp3109P109delCCA---11B.1.5610.000397
ORF1ab/nsp3109P109PccAccT11B.1.5610.000397
ORF1ab/nsp3109P109LcCacTa11B.1.5640.000426
ORF1ab/nsp3109P109SCcaTca11B.1.5650.00081
ORF1ab/nsp3109P109LcCacTa11B.1.5760.000907
ORF1ab/nsp3109P109delCCA---11B.1.5770.000687
ORF1ab/nsp3109P109LcCacTa11B.1.595.40.007299
ORF1ab/nsp3109P109PccAccC11B.1.5990.00365
ORF1ab/nsp3109P109TCcaAca11B.1.6090.000479
ORF1ab/nsp3109P109delCCA---11B.1.617.20.000004
ORF1ab/nsp3109P109LcCacTa11B.1.6230.000536
ORF1ab/nsp3109P109LcCacTa11B.1.6260.005714
ORF1ab/nsp3109P109PccAccG11B.1.6370.000073
ORF1ab/nsp3109P109LcCacTa11B.1.9.40.006135
ORF1ab/nsp3109P109LcCacTa11B.400.000364
ORF1ab/nsp3109P109PccAccT11B.560.028571
ORF1ab/nsp3109P109LcCacTa11B.60.00091
ORF1ab/nsp3109P109PccAccG11B.6.60.000889
ORF1ab/nsp3109P109SCcaTca11C.350.000774
ORF1ab/nsp3109P109PccAccG11C.36.30.000567
ORF1ab/nsp3109P109ACcaGca11C.37.10.002618
ORF1ab/nsp3109P109PccAccG11N.80.03125
ORF1ab/nsp3109P109del2CCA--N11P.10.000016
ORF1ab/nsp3109P109delCCA---11P.10.000016
ORF1ab/nsp3109P109LcCacTa11P.1.10.000318
ORF1ab/nsp3109P109SCcaTca11P.1.120.000484
ORF1ab/nsp3109P109ACcaGca11P.1.170.000162
ORF1ab/nsp3109P109LcCacTa11P.1.20.001156
ORF1ab/nsp3109P109LcCacTa11P.1.40.000977
ORF1ab/nsp3109P109LcCacTa11P.1.90.004808
ORF1ab/nsp3109P109SCcaTca11P.20.000187
ORF1ab/nsp3109P109LcCacTa11P.20.000187
ORF1ab/nsp3109P109LcCacTa11P.30.001595
ORF1ab/nsp3109P109SCcaTca11P.70.004367
ORF1ab/nsp3109P109PccAccT11Q.40.000455
ORF1ab/nsp3109P109SCcaTca11Q.80.000165
ORF1ab/nsp3109P109del1ccAcc-11R.10.00009
ORF1ab/nsp3109P109SCcaTca11R.10.00009
ORF1ab/nsp3109P109SCcaTca11U.30.003861
ORF1ab/nsp3109P109LcCacTa11Z.10.00289