CoV-GLUE | Mutations | Mutation

CoV-GLUE Mutation: ORF = ORF1ab/nsp3 : CodonNum = 1089

Details of the codons used for the mutation across all lineages (CodonProp is the proportion each codon is used for this AA mutation):

ORFCodonNumMutORF1abMutMutTypeRefCodonMutCodonAACountCodonCountCodonPropGenome Position
ORF1ab/nsp31089F1089FF1907FsynttCttT1139826113982615984-5986
ORF1ab/nsp31089F1089delF1907deldelTTC---12912915984-5986
ORF1ab/nsp31089F1089LF1907LnonsynttCttA27110.4074075984-5986
ORF1ab/nsp31089F1089LF1907LnonsynTtcCtc27100.370375984-5986
ORF1ab/nsp31089F1089LF1907LnonsynTtCCtT2730.1111115984-5986
ORF1ab/nsp31089F1089LF1907LnonsynTtCCtA2720.07407415984-5986
ORF1ab/nsp31089F1089LF1907LnonsynttCttG2710.0370375984-5986
ORF1ab/nsp31089F1089SF1907SnonsyntTctCc18110.6111115984-5986
ORF1ab/nsp31089F1089SF1907SnonsyntTCtCA1870.3888895984-5986
ORF1ab/nsp31089F1089VF1907VnonsynTtcGtc11100.9090915984-5986
ORF1ab/nsp31089F1089VF1907VnonsynTtCGtA1110.09090915984-5986
ORF1ab/nsp31089F1089del1F1907del1delttCtt-1090.95984-5986
ORF1ab/nsp31089F1089del1F1907del1delTtC-tN1010.15984-5986
ORF1ab/nsp31089F1089IF1907InonsynTtcAtc7715984-5986
ORF1ab/nsp31089F1089YF1907YnonsyntTctAc760.8571435984-5986
ORF1ab/nsp31089F1089YF1907YnonsyntTCtAT710.1428575984-5986
ORF1ab/nsp31089F1089PF1907PnonsynTTcCCc320.6666675984-5986
ORF1ab/nsp31089F1089PF1907PnonsynTTCCCA310.3333335984-5986
ORF1ab/nsp31089F1089del2F1907del2deltTCt--2215984-5986
ORF1ab/nsp31089F1089CF1907CnonsyntTCtGT210.55984-5986
ORF1ab/nsp31089F1089CF1907CnonsyntTctGc210.55984-5986
ORF1ab/nsp31089F1089AF1907AnonsynTTcGCc1115984-5986

Details of the mutation no within lineages (LineageCodonProp is the proportion the codon is observed at, at this particular site, on each lineage):

ORFCodonNumMutRefCodonMutCodonCodonCountAACountLineageLineageCodonProp
ORF1ab/nsp31089F1089FttCttT11398261139826All0.218005
ORF1ab/nsp31089F1089FttCttT11030591103059B.1.1.70.987484
ORF1ab/nsp31089F1089FttCttT78597859Q.10.992799
ORF1ab/nsp31089F1089FttCttT68176817Q.30.988687
ORF1ab/nsp31089F1089FttCttT54035403Q.80.890996
ORF1ab/nsp31089F1089FttCttT22782278B.1.10.041325
ORF1ab/nsp31089F1089FttCttT21652165Q.40.984538
ORF1ab/nsp31089F1089FttCttT18151815B.10.016625
ORF1ab/nsp31089F1089FttCttT15361536Q.20.942331
ORF1ab/nsp31089F1089FttCttT889889Q.70.987778
ORF1ab/nsp31089F1089FttCttT742742AY.40.001155
ORF1ab/nsp31089F1089FttCttT527527B.1.258.110.208878
ORF1ab/nsp31089F1089FttCttT448448B.1.1270.984615
ORF1ab/nsp31089F1089FttCttT426426B.1.617.20.001604
ORF1ab/nsp31089F1089FttCttT376376B.1.5260.008838
ORF1ab/nsp31089F1089FttCttT305305B.1.20.002686
ORF1ab/nsp31089F1089FttCttT281281AY.1030.001745
ORF1ab/nsp31089F1089FttCttT238238B.1.4270.012018
ORF1ab/nsp31089F1089FttCttT208208B.1.575.21
ORF1ab/nsp31089F1089FttCttT181181B.1.3510.00538
ORF1ab/nsp31089F1089FttCttT172172AY.430.000762
ORF1ab/nsp31089F1089FttCttT171171B.1.1770.002252
ORF1ab/nsp31089F1089FttCttT165165B.1.3370.921788
ORF1ab/nsp31089F1089FttCttT156156B.1.1.5190.006195
ORF1ab/nsp31089F1089FttCttT149149Q.60.986755
ORF1ab/nsp31089F1089FttCttT133133B.1.2210.009447
ORF1ab/nsp31089F1089FttCttT132132B.1.36.280.758621
ORF1ab/nsp31089F1089delTTC---129129All0.000025
ORF1ab/nsp31089F1089FttCttT128128B.1.177.730.07248
ORF1ab/nsp31089F1089FttCttT126126B.1.3750.103279
ORF1ab/nsp31089F1089FttCttT126126B.1.5760.114234
ORF1ab/nsp31089F1089FttCttT121121AY.250.000728
ORF1ab/nsp31089F1089FttCttT108108B.1.6360.724832
ORF1ab/nsp31089F1089FttCttT103103P.10.001623
ORF1ab/nsp31089F1089FttCttT102102B.1.5960.008888
ORF1ab/nsp31089F1089FttCttT8585AY.440.000517
ORF1ab/nsp31089F1089FttCttT6262AY.30.000617
ORF1ab/nsp31089F1089FttCttT6060AY.390.001483
ORF1ab/nsp31089F1089FttCttT5858AY.330.003873
ORF1ab/nsp31089F1089FttCttT5858B.1.4290.001365
ORF1ab/nsp31089F1089FttCttT5858Q.50.983051
ORF1ab/nsp31089F1089FttCttT5555B.1.5990.20073
ORF1ab/nsp31089F1089FttCttT5151AY.1020.001352
ORF1ab/nsp31089F1089delTTC---4747B.1.1.70.000042
ORF1ab/nsp31089F1089FttCttT4747C.370.005455
ORF1ab/nsp31089F1089FttCttT3838AY.750.002129
ORF1ab/nsp31089F1089FttCttT3737B.1.1.4090.104816
ORF1ab/nsp31089F1089FttCttT3333B.1.3610.042526
ORF1ab/nsp31089F1089FttCttT3232B.1.5950.008351
ORF1ab/nsp31089F1089FttCttT3131AY.9.20.001139
ORF1ab/nsp31089F1089FttCttT3131B.1.177.70.00511
ORF1ab/nsp31089F1089FttCttT3030B.1.1.2050.111524
ORF1ab/nsp31089F1089FttCttT3030B.1.1.2220.00612
ORF1ab/nsp31089F1089FttCttT3030B.1.2580.001996
ORF1ab/nsp31089F1089FttCttT2929B.1.36.290.015003
ORF1ab/nsp31089F1089FttCttT2929B.1.6090.013902
ORF1ab/nsp31089F1089LttCttA1127All0.000002
ORF1ab/nsp31089F1089LTtcCtc1027All0.000002
ORF1ab/nsp31089F1089LTtCCtT327All0.000001
ORF1ab/nsp31089F1089LTtCCtA227All0
ORF1ab/nsp31089F1089LttCttG127All0
ORF1ab/nsp31089F1089FttCttT2727B.1.1.1610.095406
ORF1ab/nsp31089F1089FttCttT2525AY.260.000708
ORF1ab/nsp31089F1089FttCttT2525B.1.1600.00078
ORF1ab/nsp31089F1089FttCttT2525P.1.10.007942
ORF1ab/nsp31089F1089FttCttT2424AY.90.001622
ORF1ab/nsp31089F1089FttCttT2424B.1.6331
ORF1ab/nsp31089F1089FttCttT2323AY.200.000894
ORF1ab/nsp31089F1089FttCttT2323AY.290.000363
ORF1ab/nsp31089F1089FttCttT2323AY.99.20.00212
ORF1ab/nsp31089F1089FttCttT2323B0.00294
ORF1ab/nsp31089F1089FttCttT2222B.1.617.10.002837
ORF1ab/nsp31089F1089FttCttT2121AY.98.10.001017
ORF1ab/nsp31089F1089FttCttT2121B.1.258.170.002183
ORF1ab/nsp31089F1089FttCttT2020B.1.1.3120.038241
ORF1ab/nsp31089F1089StTctCc1118All0.000002
ORF1ab/nsp31089F1089StTCtCA718All0.000001
ORF1ab/nsp31089F1089FttCttT1818P.1.140.00086
ORF1ab/nsp31089F1089FttCttT1717AY.1170.001437
ORF1ab/nsp31089F1089FttCttT1717AY.230.001186
ORF1ab/nsp31089F1089FttCttT1717AY.420.000684
ORF1ab/nsp31089F1089FttCttT1616B.1.6200.015137
ORF1ab/nsp31089F1089FttCttT1616D.20.001201
ORF1ab/nsp31089F1089FttCttT1515AY.1210.00203
ORF1ab/nsp31089F1089FttCttT1515B.1.1.2140.000832
ORF1ab/nsp31089F1089FttCttT1515B.1.1.5070.130435
ORF1ab/nsp31089F1089FttCttT1515P.1.150.003485
ORF1ab/nsp31089F1089FttCttT1414AY.39.10.000555
ORF1ab/nsp31089F1089FttCttT1414AY.46.60.001011
ORF1ab/nsp31089F1089FttCttT1414AY.980.001106
ORF1ab/nsp31089F1089FttCttT1414C.36.30.007941
ORF1ab/nsp31089F1089FttCttT1414R.10.00126
ORF1ab/nsp31089F1089FttCttT1313AY.1190.000459
ORF1ab/nsp31089F1089FttCttT1313B.1.1.2200.024164
ORF1ab/nsp31089F1089FttCttT1313B.1.1.5280.0625
ORF1ab/nsp31089F1089FttCttT1313B.1.2430.000905
ORF1ab/nsp31089F1089FttCttT1313B.1.6210.001151
ORF1ab/nsp31089F1089FttCttT1212AY.9.10.001005
ORF1ab/nsp31089F1089FttCttT1212B.1.1.10.00392
ORF1ab/nsp31089F1089FttCttT1212B.1.1.3060.005261
ORF1ab/nsp31089F1089VTtcGtc1011All0.000002
ORF1ab/nsp31089F1089VTtCGtA111All0
ORF1ab/nsp31089F1089FttCttT1111AY.450.001339
ORF1ab/nsp31089F1089FttCttT1111AY.470.000342
ORF1ab/nsp31089F1089FttCttT1111AY.700.002294
ORF1ab/nsp31089F1089FttCttT1111B.1.2340.001451
ORF1ab/nsp31089F1089FttCttT1111B.1.466.20.004304
ORF1ab/nsp31089F1089delTTC---1111B.1.617.20.000041
ORF1ab/nsp31089F1089FttCttT1111B.1.6370.000804
ORF1ab/nsp31089F1089del1ttCtt-910All0.000002
ORF1ab/nsp31089F1089del1TtC-tN110All0
ORF1ab/nsp31089F1089FttCttT1010AY.540.000953
ORF1ab/nsp31089F1089FttCttT1010B.1.360.001459
ORF1ab/nsp31089F1089FttCttT1010B.1.4700.014045
ORF1ab/nsp31089F1089FttCttT1010B.1.6230.005365
ORF1ab/nsp31089F1089FttCttT1010P.1.160.003741
ORF1ab/nsp31089F1089FttCttT99AY.3.10.000767
ORF1ab/nsp31089F1089FttCttT99AY.4.50.000967
ORF1ab/nsp31089F1089FttCttT99AY.610.000943
ORF1ab/nsp31089F1089FttCttT99B.1.1.2160.008014
ORF1ab/nsp31089F1089FttCttT99B.1.1.280.002801
ORF1ab/nsp31089F1089FttCttT99B.1.1260.01148
ORF1ab/nsp31089F1089FttCttT88AY.1180.000501
ORF1ab/nsp31089F1089FttCttT88AY.50.000165
ORF1ab/nsp31089F1089FttCttT88B.1.1.1640.041237
ORF1ab/nsp31089F1089FttCttT88B.1.1.2070.009456
ORF1ab/nsp31089F1089FttCttT88B.1.1.4160.00724
ORF1ab/nsp31089F1089FttCttT88B.1.1.500.005431
ORF1ab/nsp31089F1089FttCttT88B.1.5250.000905
ORF1ab/nsp31089F1089FttCttT77A.2.5.20.011006
ORF1ab/nsp31089F1089ITtcAtc77All0.000001
ORF1ab/nsp31089F1089YtTctAc67All0.000001
ORF1ab/nsp31089F1089YtTCtAT17All0
ORF1ab/nsp31089F1089FttCttT77AY.140.000616
ORF1ab/nsp31089F1089delTTC---77AY.250.000042
ORF1ab/nsp31089F1089FttCttT77AY.300.00277
ORF1ab/nsp31089F1089FttCttT77B.1.1.100.007804
ORF1ab/nsp31089F1089FttCttT77B.1.177.860.001284
ORF1ab/nsp31089F1089FttCttT77B.1.214.20.004197
ORF1ab/nsp31089F1089FttCttT77B.1.3670.005547
ORF1ab/nsp31089F1089FttCttT77B.1.5750.002124
ORF1ab/nsp31089F1089FttCttT77B.1.5800.028455
ORF1ab/nsp31089F1089FttCttT77B.1.617.30.020896
ORF1ab/nsp31089F1089FttCttT66AD.20.001314
ORF1ab/nsp31089F1089FttCttT66AY.1000.000276
ORF1ab/nsp31089F1089FttCttT66AY.1200.000223
ORF1ab/nsp31089F1089delTTC---66AY.430.000027
ORF1ab/nsp31089F1089LTtcCtc66AY.46.60.000433
ORF1ab/nsp31089F1089FttCttT66AY.60.000247
ORF1ab/nsp31089F1089FttCttT66B.1.1.2770.004552
ORF1ab/nsp31089F1089FttCttT66B.1.1.3170.00247
ORF1ab/nsp31089F1089FttCttT66B.1.2390.007326
ORF1ab/nsp31089F1089FttCttT66B.1.4250.017964
ORF1ab/nsp31089F1089FttCttT66B.1.6280.002114
ORF1ab/nsp31089F1089FttCttT66P.1.170.000971
ORF1ab/nsp31089F1089FttCttT55A.2.50.002495
ORF1ab/nsp31089F1089FttCttT55AY.340.000485
ORF1ab/nsp31089F1089FttCttT55AY.4.2.10.000745
ORF1ab/nsp31089F1089FttCttT55AY.4.30.004209
ORF1ab/nsp31089F1089FttCttT55AY.680.001369
ORF1ab/nsp31089F1089delTTC---55B.1.10.000091
ORF1ab/nsp31089F1089FttCttT55B.1.1.630.001929
ORF1ab/nsp31089F1089del1ttCtt-55B.1.1.70.000004
ORF1ab/nsp31089F1089FttCttT55B.1.1.890.030303
ORF1ab/nsp31089F1089FttCttT55B.1.1390.003666
ORF1ab/nsp31089F1089FttCttT55B.1.3050.010753
ORF1ab/nsp31089F1089FttCttT55B.1.4110.018519
ORF1ab/nsp31089F1089FttCttT55B.1.438.10.000536
ORF1ab/nsp31089F1089FttCttT55B.1.5330.048077
ORF1ab/nsp31089F1089FttCttT55P.1.120.00242
ORF1ab/nsp31089F1089FttCttT55P.20.000933
ORF1ab/nsp31089F1089LTtCCtT240.111111
ORF1ab/nsp31089F1089LTtCCtA240.111111
ORF1ab/nsp31089F1089FttCttT44AY.1110.000733
ORF1ab/nsp31089F1089FttCttT44AY.380.001997
ORF1ab/nsp31089F1089delTTC---44AY.40.000006
ORF1ab/nsp31089F1089FttCttT44AY.4.20.000087
ORF1ab/nsp31089F1089FttCttT44AY.620.001743
ORF1ab/nsp31089F1089FttCttT44AY.840.00175
ORF1ab/nsp31089F1089FttCttT44B.1.1.1740.013514
ORF1ab/nsp31089F1089FttCttT44B.1.1.2910.00297
ORF1ab/nsp31089F1089FttCttT44B.1.1.2940.005063
ORF1ab/nsp31089F1089FttCttT44B.1.1.390.002039
ORF1ab/nsp31089F1089FttCttT44B.1.1.5240.083333
ORF1ab/nsp31089F1089LttCttA34B.1.1.70.000003
ORF1ab/nsp31089F1089LTtCCtT14B.1.1.70.000001
ORF1ab/nsp31089F1089FttCttT44B.1.160.160.003717
ORF1ab/nsp31089F1089FttCttT44B.1.177.770.002905
ORF1ab/nsp31089F1089FttCttT44B.1.2140.014652
ORF1ab/nsp31089F1089FttCttT44B.1.2370.0199
ORF1ab/nsp31089F1089FttCttT44B.1.351.30.003506
ORF1ab/nsp31089F1089FttCttT44B.1.3540.173913
ORF1ab/nsp31089F1089FttCttT44B.1.4000.001716
ORF1ab/nsp31089F1089FttCttT44B.1.4620.028986
ORF1ab/nsp31089F1089FttCttT44B.1.5650.003241
ORF1ab/nsp31089F1089FttCttT44B.1.621.10.002023
ORF1ab/nsp31089F1089FttCttT44B.1.6250.009412
ORF1ab/nsp31089F1089FttCttT330.166667
ORF1ab/nsp31089F1089FttCttT33A.280.007937
ORF1ab/nsp31089F1089PTTcCCc23All0
ORF1ab/nsp31089F1089PTTCCCA13All0
ORF1ab/nsp31089F1089FttCttT33AY.1010.001471
ORF1ab/nsp31089F1089delTTC---33AY.1030.000019
ORF1ab/nsp31089F1089FttCttT33AY.1060.001005
ORF1ab/nsp31089F1089FttCttT33AY.240.001293
ORF1ab/nsp31089F1089FttCttT33AY.520.002443
ORF1ab/nsp31089F1089FttCttT33AY.710.001425
ORF1ab/nsp31089F1089FttCttT33AY.850.001282
ORF1ab/nsp31089F1089delTTC---33B.10.000027
ORF1ab/nsp31089F1089FttCttT33B.1.1.1890.004539
ORF1ab/nsp31089F1089FttCttT33B.1.1.3700.037975
ORF1ab/nsp31089F1089FttCttT33B.1.1.3720.002066
ORF1ab/nsp31089F1089FttCttT33B.1.1.4320.003797
ORF1ab/nsp31089F1089FttCttT33B.1.1.4640.004418
ORF1ab/nsp31089F1089FttCttT33B.1.1.5230.004687
ORF1ab/nsp31089F1089FttCttT33B.1.1.5250.016393
ORF1ab/nsp31089F1089delTTC---33B.1.1770.00004
ORF1ab/nsp31089F1089FttCttT33B.1.177.210.000229
ORF1ab/nsp31089F1089FttCttT33B.1.177.310.034483
ORF1ab/nsp31089F1089FttCttT33B.1.177.460.002755
ORF1ab/nsp31089F1089FttCttT33B.1.177.750.003122
ORF1ab/nsp31089F1089FttCttT33B.1.2400.000647
ORF1ab/nsp31089F1089FttCttT33B.1.3960.002117
ORF1ab/nsp31089F1089FttCttT33B.1.4280.003061
ORF1ab/nsp31089F1089FttCttT33B.1.6190.002613
ORF1ab/nsp31089F1089FttCttT33N.50.0053
ORF1ab/nsp31089F1089FttCttT33P.1.100.000808
ORF1ab/nsp31089F1089FttCttT33P.1.60.005837
ORF1ab/nsp31089F1089FttCttT33P.1.70.000958
ORF1ab/nsp31089F1089del1ttCtt-220.111111
ORF1ab/nsp31089F1089delTTC---220.111111
ORF1ab/nsp31089F1089FttCttT22A0.000774
ORF1ab/nsp31089F1089del2tTCt--22All0
ORF1ab/nsp31089F1089CtTCtGT12All0
ORF1ab/nsp31089F1089CtTctGc12All0
ORF1ab/nsp31089F1089FttCttT22AY.120.000632
ORF1ab/nsp31089F1089FttCttT22AY.270.000129
ORF1ab/nsp31089F1089FttCttT22AY.510.001818
ORF1ab/nsp31089F1089FttCttT22AY.590.001059
ORF1ab/nsp31089F1089delTTC---22AY.670.000929
ORF1ab/nsp31089F1089FttCttT22AY.690.000373
ORF1ab/nsp31089F1089StTCtCA22AY.750.000112
ORF1ab/nsp31089F1089delTTC---22AY.9.20.000073
ORF1ab/nsp31089F1089VTtcGtc22B.10.000018
ORF1ab/nsp31089F1089FttCttT22B.1.1.120.014925
ORF1ab/nsp31089F1089ITtcAtc22B.1.1.1350.00939
ORF1ab/nsp31089F1089FttCttT22B.1.1.1410.004024
ORF1ab/nsp31089F1089FttCttT22B.1.1.2340.024096
ORF1ab/nsp31089F1089FttCttT22B.1.1.250.001137
ORF1ab/nsp31089F1089FttCttT22B.1.1.2840.000215
ORF1ab/nsp31089F1089FttCttT22B.1.1.2990.02439
ORF1ab/nsp31089F1089FttCttT22B.1.1.3150.016949
ORF1ab/nsp31089F1089FttCttT22B.1.1.3180.000604
ORF1ab/nsp31089F1089FttCttT22B.1.1.3540.008772
ORF1ab/nsp31089F1089FttCttT22B.1.1.4480.004065
ORF1ab/nsp31089F1089del2tTCt--22B.1.1.70.000002
ORF1ab/nsp31089F1089FttCttT22B.1.1.700.000682
ORF1ab/nsp31089F1089FttCttT22B.1.1280.001271
ORF1ab/nsp31089F1089FttCttT22B.1.1310.017544
ORF1ab/nsp31089F1089FttCttT22B.1.1470.001512
ORF1ab/nsp31089F1089FttCttT22B.1.1570.00597
ORF1ab/nsp31089F1089LTtcCtc12B.1.1770.000013
ORF1ab/nsp31089F1089LttCttA12B.1.1770.000013
ORF1ab/nsp31089F1089FttCttT22B.1.177.120.000303
ORF1ab/nsp31089F1089FttCttT22B.1.177.420.001789
ORF1ab/nsp31089F1089FttCttT22B.1.177.540.001213
ORF1ab/nsp31089F1089FttCttT22B.1.177.570.000562
ORF1ab/nsp31089F1089FttCttT22B.1.177.620.002384
ORF1ab/nsp31089F1089StTctCc22B.1.20.000018
ORF1ab/nsp31089F1089FttCttT22B.1.2320.001075
ORF1ab/nsp31089F1089delTTC---22B.1.2580.000133
ORF1ab/nsp31089F1089FttCttT22B.1.2600.006689
ORF1ab/nsp31089F1089FttCttT22B.1.3110.000549
ORF1ab/nsp31089F1089FttCttT22B.1.3300.057143
ORF1ab/nsp31089F1089FttCttT22B.1.351.50.001199
ORF1ab/nsp31089F1089FttCttT22B.1.36.170.000988
ORF1ab/nsp31089F1089FttCttT22B.1.36.380.003284
ORF1ab/nsp31089F1089FttCttT22B.1.3800.013245
ORF1ab/nsp31089F1089FttCttT22B.1.3990.003868
ORF1ab/nsp31089F1089FttCttT22B.1.4130.008511
ORF1ab/nsp31089F1089FttCttT22B.1.4740.003802
ORF1ab/nsp31089F1089FttCttT22B.1.4970.00063
ORF1ab/nsp31089F1089FttCttT22B.1.5300.014286
ORF1ab/nsp31089F1089FttCttT22B.1.5610.000794
ORF1ab/nsp31089F1089FttCttT22B.1.5700.005882
ORF1ab/nsp31089F1089FttCttT22B.1.5980.033898
ORF1ab/nsp31089F1089FttCttT22B.1.6180.008065
ORF1ab/nsp31089F1089FttCttT22B.1.6340.006849
ORF1ab/nsp31089F1089FttCttT22B.1.780.017094
ORF1ab/nsp31089F1089FttCttT22B.310.007463
ORF1ab/nsp31089F1089FttCttT22B.40.004415
ORF1ab/nsp31089F1089FttCttT22B.530.023529
ORF1ab/nsp31089F1089delTTC---22C.370.000232
ORF1ab/nsp31089F1089delTTC---22P.10.000032
ORF1ab/nsp31089F1089FttCttT22P.1.10.10.01626
ORF1ab/nsp31089F1089FttCttT11A.110.058824
ORF1ab/nsp31089F1089FttCttT11A.2.20.001689
ORF1ab/nsp31089F1089YtTctAc11A.2.40.003367
ORF1ab/nsp31089F1089FttCttT11A.270.001656
ORF1ab/nsp31089F1089FttCttT11A.30.002096
ORF1ab/nsp31089F1089FttCttT11A.70.055556
ORF1ab/nsp31089F1089FttCttT11AA.10.007246
ORF1ab/nsp31089F1089delTTC---11AD.20.000219
ORF1ab/nsp31089F1089ATTcGCc11All0
ORF1ab/nsp31089F1089FttCttT11AU.10.001266
ORF1ab/nsp31089F1089delTTC---11AY.1020.000027
ORF1ab/nsp31089F1089StTctCc11AY.1030.000006
ORF1ab/nsp31089F1089FttCttT11AY.1050.000643
ORF1ab/nsp31089F1089FttCttT11AY.1070.000466
ORF1ab/nsp31089F1089FttCttT11AY.1100.000113
ORF1ab/nsp31089F1089delTTC---11AY.1130.000142
ORF1ab/nsp31089F1089FttCttT11AY.1130.000142
ORF1ab/nsp31089F1089VTtcGtc11AY.1190.000035
ORF1ab/nsp31089F1089LTtcCtc11AY.120.000316
ORF1ab/nsp31089F1089FttCttT11AY.120.10.000321
ORF1ab/nsp31089F1089FttCttT11AY.120.20.001285
ORF1ab/nsp31089F1089FttCttT11AY.16.10.00047
ORF1ab/nsp31089F1089StTctCc11AY.250.000006
ORF1ab/nsp31089F1089FttCttT11AY.280.00189
ORF1ab/nsp31089F1089delTTC---11AY.290.000016
ORF1ab/nsp31089F1089delTTC---11AY.30.00001
ORF1ab/nsp31089F1089StTctCc11AY.3.10.000085
ORF1ab/nsp31089F1089ITtcAtc11AY.300.000396
ORF1ab/nsp31089F1089FttCttT11AY.34.10.00051
ORF1ab/nsp31089F1089FttCttT11AY.350.000233
ORF1ab/nsp31089F1089delTTC---11AY.360.000148
ORF1ab/nsp31089F1089FttCttT11AY.370.000316
ORF1ab/nsp31089F1089StTCtCA11AY.390.000025
ORF1ab/nsp31089F1089LttCttA11AY.40.000002
ORF1ab/nsp31089F1089ATTcGCc11AY.40.000002
ORF1ab/nsp31089F1089YtTctAc11AY.40.000002
ORF1ab/nsp31089F1089delTTC---11AY.4.30.000842
ORF1ab/nsp31089F1089FttCttT11AY.400.000964
ORF1ab/nsp31089F1089FttCttT11AY.410.000294
ORF1ab/nsp31089F1089delTTC---11AY.440.000006
ORF1ab/nsp31089F1089StTCtCA11AY.440.000006
ORF1ab/nsp31089F1089FttCttT11AY.46.10.001027
ORF1ab/nsp31089F1089FttCttT11AY.46.40.000165
ORF1ab/nsp31089F1089FttCttT11AY.46.50.000198
ORF1ab/nsp31089F1089delTTC---11AY.46.60.000072
ORF1ab/nsp31089F1089FttCttT11AY.5.10.003759
ORF1ab/nsp31089F1089delTTC---11AY.5.30.000337
ORF1ab/nsp31089F1089FttCttT11AY.5.40.000277
ORF1ab/nsp31089F1089VTtcGtc11AY.530.000288
ORF1ab/nsp31089F1089delTTC---11AY.540.000095
ORF1ab/nsp31089F1089FttCttT11AY.550.000917
ORF1ab/nsp31089F1089delTTC---11AY.610.000105
ORF1ab/nsp31089F1089delTTC---11AY.650.000533
ORF1ab/nsp31089F1089delTTC---11AY.660.00107
ORF1ab/nsp31089F1089FttCttT11AY.660.00107
ORF1ab/nsp31089F1089FttCttT11AY.670.000464
ORF1ab/nsp31089F1089LttCttA11AY.690.000187
ORF1ab/nsp31089F1089FttCttT11AY.7.20.000559
ORF1ab/nsp31089F1089FttCttT11AY.740.000116
ORF1ab/nsp31089F1089delTTC---11AY.750.000056
ORF1ab/nsp31089F1089FttCttT11AY.75.10.00018
ORF1ab/nsp31089F1089FttCttT11AY.780.001541
ORF1ab/nsp31089F1089FttCttT11AY.820.001357
ORF1ab/nsp31089F1089StTctCc11AY.840.000437
ORF1ab/nsp31089F1089delTTC---11AY.850.000427
ORF1ab/nsp31089F1089FttCttT11AY.880.000884
ORF1ab/nsp31089F1089StTCtCA11AY.9.20.000037
ORF1ab/nsp31089F1089PTTcCCc11AY.9.20.000037
ORF1ab/nsp31089F1089FttCttT11AY.900.000684
ORF1ab/nsp31089F1089FttCttT11AY.920.000287
ORF1ab/nsp31089F1089FttCttT11AY.950.000761
ORF1ab/nsp31089F1089FttCttT11AY.960.002075
ORF1ab/nsp31089F1089FttCttT11AY.970.001701
ORF1ab/nsp31089F1089delTTC---11AY.98.10.000048
ORF1ab/nsp31089F1089PTTcCCc11AY.990.001049
ORF1ab/nsp31089F1089del1TtC-tN11AZ.20.000821
ORF1ab/nsp31089F1089FttCttT11AZ.20.000821
ORF1ab/nsp31089F1089LttCttA11B0.000128
ORF1ab/nsp31089F1089StTctCc11B.10.000009
ORF1ab/nsp31089F1089LttCttA11B.10.000009
ORF1ab/nsp31089F1089CtTctGc11B.10.000009
ORF1ab/nsp31089F1089YtTctAc11B.10.000009
ORF1ab/nsp31089F1089VTtCGtA11B.1.10.000018
ORF1ab/nsp31089F1089StTCtCA11B.1.10.000018
ORF1ab/nsp31089F1089FttCttT11B.1.1.1350.004695
ORF1ab/nsp31089F1089FttCttT11B.1.1.1590.004673
ORF1ab/nsp31089F1089FttCttT11B.1.1.1620.029412
ORF1ab/nsp31089F1089FttCttT11B.1.1.1710.003676
ORF1ab/nsp31089F1089FttCttT11B.1.1.1870.00885
ORF1ab/nsp31089F1089FttCttT11B.1.1.1920.002309
ORF1ab/nsp31089F1089delTTC---11B.1.1.2070.001182
ORF1ab/nsp31089F1089FttCttT11B.1.1.2210.010101
ORF1ab/nsp31089F1089FttCttT11B.1.1.2280.003049
ORF1ab/nsp31089F1089FttCttT11B.1.1.2310.003096
ORF1ab/nsp31089F1089FttCttT11B.1.1.2360.006897
ORF1ab/nsp31089F1089FttCttT11B.1.1.2370.005405
ORF1ab/nsp31089F1089FttCttT11B.1.1.2440.015385
ORF1ab/nsp31089F1089FttCttT11B.1.1.2690.001353
ORF1ab/nsp31089F1089FttCttT11B.1.1.3020.002075
ORF1ab/nsp31089F1089FttCttT11B.1.1.3110.000358
ORF1ab/nsp31089F1089FttCttT11B.1.1.3160.000925
ORF1ab/nsp31089F1089FttCttT11B.1.1.3220.008772
ORF1ab/nsp31089F1089FttCttT11B.1.1.3260.001761
ORF1ab/nsp31089F1089FttCttT11B.1.1.340.013158
ORF1ab/nsp31089F1089FttCttT11B.1.1.3590.027778
ORF1ab/nsp31089F1089FttCttT11B.1.1.3690.000446
ORF1ab/nsp31089F1089FttCttT11B.1.1.370.000193
ORF1ab/nsp31089F1089FttCttT11B.1.1.3710.010417
ORF1ab/nsp31089F1089YtTctAc11B.1.1.3720.000689
ORF1ab/nsp31089F1089FttCttT11B.1.1.3740.002375
ORF1ab/nsp31089F1089FttCttT11B.1.1.3800.009804
ORF1ab/nsp31089F1089FttCttT11B.1.1.4060.006494
ORF1ab/nsp31089F1089FttCttT11B.1.1.4070.041667
ORF1ab/nsp31089F1089delTTC---11B.1.1.4090.002833
ORF1ab/nsp31089F1089FttCttT11B.1.1.4130.006897
ORF1ab/nsp31089F1089FttCttT11B.1.1.4340.000349
ORF1ab/nsp31089F1089FttCttT11B.1.1.440.00241
ORF1ab/nsp31089F1089FttCttT11B.1.1.4400.011765
ORF1ab/nsp31089F1089FttCttT11B.1.1.4620.008621
ORF1ab/nsp31089F1089FttCttT11B.1.1.4860.001577
ORF1ab/nsp31089F1089LTtcCtc11B.1.1.5190.00004
ORF1ab/nsp31089F1089FttCttT11B.1.1.520.012195
ORF1ab/nsp31089F1089FttCttT11B.1.1.550.012987
ORF1ab/nsp31089F1089CtTCtGT11B.1.1.70.000001
ORF1ab/nsp31089F1089FttCttT11B.1.1.830.00271
ORF1ab/nsp31089F1089FttCttT11B.1.1.990.02381
ORF1ab/nsp31089F1089FttCttT11B.1.1080.005814
ORF1ab/nsp31089F1089FttCttT11B.1.1110.001175
ORF1ab/nsp31089F1089FttCttT11B.1.160.140.002119
ORF1ab/nsp31089F1089FttCttT11B.1.160.170.001701
ORF1ab/nsp31089F1089FttCttT11B.1.160.220.006757
ORF1ab/nsp31089F1089LttCttA11B.1.1660.008475
ORF1ab/nsp31089F1089FttCttT11B.1.1690.014925
ORF1ab/nsp31089F1089StTctCc11B.1.1700.00431
ORF1ab/nsp31089F1089FttCttT11B.1.1700.00431
ORF1ab/nsp31089F1089StTctCc11B.1.1770.000013
ORF1ab/nsp31089F1089FttCttT11B.1.177.150.000631
ORF1ab/nsp31089F1089delTTC---11B.1.177.320.00135
ORF1ab/nsp31089F1089FttCttT11B.1.177.440.000519
ORF1ab/nsp31089F1089FttCttT11B.1.177.520.001757
ORF1ab/nsp31089F1089FttCttT11B.1.177.530.002392
ORF1ab/nsp31089F1089FttCttT11B.1.177.560.000668
ORF1ab/nsp31089F1089FttCttT11B.1.177.60.000977
ORF1ab/nsp31089F1089FttCttT11B.1.177.720.00339
ORF1ab/nsp31089F1089FttCttT11B.1.177.810.000189
ORF1ab/nsp31089F1089FttCttT11B.1.177.820.000477
ORF1ab/nsp31089F1089FttCttT11B.1.177.90.001332
ORF1ab/nsp31089F1089FttCttT11B.1.1950.005025
ORF1ab/nsp31089F1089VTtcGtc11B.1.20.000009
ORF1ab/nsp31089F1089LttCttA11B.1.20.000009
ORF1ab/nsp31089F1089delTTC---11B.1.20.000009
ORF1ab/nsp31089F1089del1ttCtt-11B.1.20.000009
ORF1ab/nsp31089F1089FttCttT11B.1.2060.000816
ORF1ab/nsp31089F1089FttCttT11B.1.214.30.007143
ORF1ab/nsp31089F1089FttCttT11B.1.220.001318
ORF1ab/nsp31089F1089LttCttA11B.1.2210.000071
ORF1ab/nsp31089F1089FttCttT11B.1.2360.002053
ORF1ab/nsp31089F1089ITtcAtc11B.1.2400.000216
ORF1ab/nsp31089F1089YtTctAc11B.1.2580.000067
ORF1ab/nsp31089F1089FttCttT11B.1.258.140.00098
ORF1ab/nsp31089F1089YtTctAc11B.1.30.002618
ORF1ab/nsp31089F1089FttCttT11B.1.3130.006579
ORF1ab/nsp31089F1089FttCttT11B.1.3200.001245
ORF1ab/nsp31089F1089FttCttT11B.1.3360.002439
ORF1ab/nsp31089F1089FttCttT11B.1.3380.008621
ORF1ab/nsp31089F1089FttCttT11B.1.3460.001311
ORF1ab/nsp31089F1089FttCttT11B.1.3490.000715
ORF1ab/nsp31089F1089delTTC---11B.1.3510.00003
ORF1ab/nsp31089F1089FttCttT11B.1.351.20.000303
ORF1ab/nsp31089F1089StTctCc11B.1.351.30.000876
ORF1ab/nsp31089F1089FttCttT11B.1.36.10.00114
ORF1ab/nsp31089F1089FttCttT11B.1.36.310.001751
ORF1ab/nsp31089F1089FttCttT11B.1.36.360.000602
ORF1ab/nsp31089F1089del1ttCtt-11B.1.36.80.001
ORF1ab/nsp31089F1089FttCttT11B.1.3690.000285
ORF1ab/nsp31089F1089FttCttT11B.1.400.019608
ORF1ab/nsp31089F1089FttCttT11B.1.4040.001302
ORF1ab/nsp31089F1089FttCttT11B.1.4080.00369
ORF1ab/nsp31089F1089FttCttT11B.1.415.10.007576
ORF1ab/nsp31089F1089delTTC---11B.1.416.10.001563
ORF1ab/nsp31089F1089LttCttG11B.1.4270.00005
ORF1ab/nsp31089F1089LTtcCtc11B.1.4290.000024
ORF1ab/nsp31089F1089FttCttT11B.1.4320.011236
ORF1ab/nsp31089F1089FttCttT11B.1.4330.003195
ORF1ab/nsp31089F1089FttCttT11B.1.4360.001029
ORF1ab/nsp31089F1089FttCttT11B.1.4710.002732
ORF1ab/nsp31089F1089FttCttT11B.1.4850.014925
ORF1ab/nsp31089F1089FttCttT11B.1.5050.004386
ORF1ab/nsp31089F1089VTtcGtc11B.1.5090.000866
ORF1ab/nsp31089F1089FttCttT11B.1.5090.000866
ORF1ab/nsp31089F1089FttCttT11B.1.5210.004975
ORF1ab/nsp31089F1089FttCttT11B.1.5230.002451
ORF1ab/nsp31089F1089FttCttT11B.1.5240.001406
ORF1ab/nsp31089F1089delTTC---11B.1.5260.000024
ORF1ab/nsp31089F1089FttCttT11B.1.5380.008065
ORF1ab/nsp31089F1089FttCttT11B.1.5440.006024
ORF1ab/nsp31089F1089FttCttT11B.1.5450.014493
ORF1ab/nsp31089F1089FttCttT11B.1.5580.004566
ORF1ab/nsp31089F1089FttCttT11B.1.5640.000426
ORF1ab/nsp31089F1089FttCttT11B.1.564.10.001577
ORF1ab/nsp31089F1089VTtcGtc11B.1.5650.00081
ORF1ab/nsp31089F1089FttCttT11B.1.5680.001111
ORF1ab/nsp31089F1089FttCttT11B.1.5740.002151
ORF1ab/nsp31089F1089VTtcGtc11B.1.5880.00091
ORF1ab/nsp31089F1089FttCttT11B.1.5900.004545
ORF1ab/nsp31089F1089FttCttT11B.1.595.10.005848
ORF1ab/nsp31089F1089YtTCtAT11B.1.5960.000087
ORF1ab/nsp31089F1089FttCttT11B.1.6040.017241
ORF1ab/nsp31089F1089FttCttT11B.1.6060.006024
ORF1ab/nsp31089F1089FttCttT11B.1.6160.02439
ORF1ab/nsp31089F1089StTCtCA11B.1.617.20.000004
ORF1ab/nsp31089F1089VTtcGtc11B.1.617.20.000004
ORF1ab/nsp31089F1089ITtcAtc11B.1.6280.000352
ORF1ab/nsp31089F1089FttCttT11B.1.6310.003367
ORF1ab/nsp31089F1089FttCttT11B.1.930.000934
ORF1ab/nsp31089F1089FttCttT11B.1.940.027027
ORF1ab/nsp31089F1089FttCttT11B.150.017544
ORF1ab/nsp31089F1089delTTC---11B.150.017544
ORF1ab/nsp31089F1089FttCttT11B.350.007812
ORF1ab/nsp31089F1089FttCttT11B.390.002331
ORF1ab/nsp31089F1089PTTCCCA11C.350.000774
ORF1ab/nsp31089F1089FttCttT11C.350.000774
ORF1ab/nsp31089F1089FttCttT11C.360.000911
ORF1ab/nsp31089F1089delTTC---11C.360.000911
ORF1ab/nsp31089F1089FttCttT11C.60.037037
ORF1ab/nsp31089F1089ITtcAtc11D.20.000075
ORF1ab/nsp31089F1089StTctCc11D.20.000075
ORF1ab/nsp31089F1089ITtcAtc11P.10.000016
ORF1ab/nsp31089F1089delTTC---11P.1.10.000318
ORF1ab/nsp31089F1089VTtcGtc11P.1.120.000484
ORF1ab/nsp31089F1089FttCttT11P.1.130.000898
ORF1ab/nsp31089F1089FttCttT11P.30.001595
ORF1ab/nsp31089F1089delTTC---11Q.20.000613
ORF1ab/nsp31089F1089FttCttT11W.40.001351