CoV-GLUEGenomeCountriesLineagesMutationsInsertionsDeletionsUpdated:

CoV-GLUE | Mutations | Mutation

CoV-GLUE Mutation: ORF = ORF1ab/nsp3 : CodonNum = 1087 & Codon = tTt

Details of the codons used for the mutation across all lineages (CodonProp is the proportion each codon is used for this AA mutation):

ORFCodonNumMutORF1abMutMutTypeRefCodonMutCodonAACountCodonCountCodonPropGenome Position
ORF1ab/nsp31087S1087FS1905FnonsyntCttTt262926260.9988595978-5980

Details of the mutation no within lineages (LineageCodonProp is the proportion the codon is observed at, at this particular site, on each lineage):

ORFCodonNumMutRefCodonMutCodonCodonCountAACountLineageLineageCodonProp
ORF1ab/nsp31087S1087FtCttTt26262629All0.000502
ORF1ab/nsp31087S1087FtCttTt12681268B.1.1.70.001135
ORF1ab/nsp31087S1087FtCttTt296296B.1.1.2320.537205
ORF1ab/nsp31087S1087FtCttTt129129AY.40.000201
ORF1ab/nsp31087S1087FtCttTt6566B.1.617.20.000245
ORF1ab/nsp31087S1087FtCttTt6565AY.430.000288
ORF1ab/nsp31087S1087FtCttTt5959AY.9.10.00494
ORF1ab/nsp31087S1087FtCttTt3434AY.1030.000211
ORF1ab/nsp31087S1087FtCttTt3333P.10.00052
ORF1ab/nsp31087S1087FtCttTt3232AY.30.000318
ORF1ab/nsp31087S1087FtCttTt3131B.1.20.000273
ORF1ab/nsp31087S1087FtCttTt3030B.1.4290.000706
ORF1ab/nsp31087S1087FtCttTt2727AY.250.000162
ORF1ab/nsp31087S1087FtCttTt2626B.10.000238
ORF1ab/nsp31087S1087FtCttTt2222B.1.5260.000517
ORF1ab/nsp31087S1087FtCttTt2121P.20.003919
ORF1ab/nsp31087S1087FtCttTt2020AY.290.000315
ORF1ab/nsp31087S1087FtCttTt1818AY.360.002668
ORF1ab/nsp31087S1087FtCttTt1818B.1.177.150.011356
ORF1ab/nsp31087S1087FtCttTt1818B.1.177.690.026706
ORF1ab/nsp31087S1087FtCttTt1717B.1.5650.013776
ORF1ab/nsp31087S1087FtCttTt1515B.1.10.000272
ORF1ab/nsp31087S1087FtCttTt1515B.1.1770.000198
ORF1ab/nsp31087S1087FtCttTt1414AY.440.000085
ORF1ab/nsp31087S1087FtCttTt1212B.1.2580.000799
ORF1ab/nsp31087S1087FtCttTt1111Q.80.001814
ORF1ab/nsp31087S1087FtCttTt1010AY.1020.000265
ORF1ab/nsp31087S1087FtCttTt1010Q.10.001263
ORF1ab/nsp31087S1087FtCttTt99AY.380.004493
ORF1ab/nsp31087S1087FtCttTt99AY.390.000222
ORF1ab/nsp31087S1087FtCttTt99AY.420.000362
ORF1ab/nsp31087S1087FtCttTt99AY.740.001041
ORF1ab/nsp31087S1087FtCttTt88B.1.1600.00025
ORF1ab/nsp31087S1087FtCttTt77AY.99.20.000645
ORF1ab/nsp31087S1087FtCttTt77B.1.351.30.006135
ORF1ab/nsp31087S1087FtCttTt77B.1.360.001021
ORF1ab/nsp31087S1087FtCttTt66AD.20.001314
ORF1ab/nsp31087S1087FtCttTt66AY.1050.003859
ORF1ab/nsp31087S1087FtCttTt66AY.1170.000507
ORF1ab/nsp31087S1087FtCttTt66AY.230.000418
ORF1ab/nsp31087S1087FtCttTt66AY.39.10.000238
ORF1ab/nsp31087S1087FtCttTt55AY.1000.00023
ORF1ab/nsp31087S1087FtCttTt55AY.1060.001674
ORF1ab/nsp31087S1087FtCttTt55AY.1190.000177
ORF1ab/nsp31087S1087FtCttTt45AY.260.000113
ORF1ab/nsp31087S1087FtCttTt55AY.750.00028
ORF1ab/nsp31087S1087FtCttTt55AY.850.002136
ORF1ab/nsp31087S1087FtCttTt55B.1.177.120.000758
ORF1ab/nsp31087S1087FtCttTt55B.1.2400.001078
ORF1ab/nsp31087S1087FtCttTt55B.1.258.220.013333
ORF1ab/nsp31087S1087FtCttTt55B.1.3690.001426
ORF1ab/nsp31087S1087FtCttTt55B.1.438.10.000536
ORF1ab/nsp31087S1087FtCttTt55B.1.6210.000443
ORF1ab/nsp31087S1087FtCttTt44AY.120.001264
ORF1ab/nsp31087S1087FtCttTt44AY.5.40.001107
ORF1ab/nsp31087S1087FtCttTt44AY.90.00027
ORF1ab/nsp31087S1087FtCttTt44B.1.1.280.001245
ORF1ab/nsp31087S1087FtCttTt44B.1.3510.000119
ORF1ab/nsp31087S1087FtCttTt44B.1.5960.000349
ORF1ab/nsp31087S1087FtCttTt44P.1.140.000191
ORF1ab/nsp31087S1087FtCttTt33AY.200.000117
ORF1ab/nsp31087S1087FtCttTt33AY.610.000314
ORF1ab/nsp31087S1087FtCttTt33AY.700.000626
ORF1ab/nsp31087S1087FtCttTt33B.1.258.170.000312
ORF1ab/nsp31087S1087FtCttTt33B.1.36.210.006479
ORF1ab/nsp31087S1087FtCttTt33B.1.466.20.001174
ORF1ab/nsp31087S1087FtCttTt33B.1.5950.000783
ORF1ab/nsp31087S1087FtCttTt33C.350.002322
ORF1ab/nsp31087S1087FtCttTt33P.1.120.001452
ORF1ab/nsp31087S1087FtCttTt22AY.100.00106
ORF1ab/nsp31087S1087FtCttTt22AY.460.000208
ORF1ab/nsp31087S1087FtCttTt22AY.46.60.000144
ORF1ab/nsp31087S1087FtCttTt22AY.470.000062
ORF1ab/nsp31087S1087FtCttTt22AY.50.000041
ORF1ab/nsp31087S1087FtCttTt22AY.830.003448
ORF1ab/nsp31087S1087FtCttTt22B.1.1.2140.000111
ORF1ab/nsp31087S1087FtCttTt22B.1.1.2840.000215
ORF1ab/nsp31087S1087FtCttTt22B.1.1.3070.005063
ORF1ab/nsp31087S1087FtCttTt22B.1.1.370.000386
ORF1ab/nsp31087S1087FtCttTt22B.1.1.4330.002849
ORF1ab/nsp31087S1087FtCttTt22B.1.1.4340.000697
ORF1ab/nsp31087S1087FtCttTt22B.1.1.700.000682
ORF1ab/nsp31087S1087FtCttTt22B.1.177.210.000153
ORF1ab/nsp31087S1087FtCttTt22B.1.177.40.000422
ORF1ab/nsp31087S1087FtCttTt22B.1.177.810.000379
ORF1ab/nsp31087S1087FtCttTt22B.1.2210.000142
ORF1ab/nsp31087S1087FtCttTt22B.1.30.005236
ORF1ab/nsp31087S1087FtCttTt22B.1.4020.019608
ORF1ab/nsp31087S1087FtCttTt12C.60.037037
ORF1ab/nsp31087S1087FtCttTt11AY.1140.000231
ORF1ab/nsp31087S1087FtCttTt11AY.1200.000037
ORF1ab/nsp31087S1087FtCttTt11AY.130.000161
ORF1ab/nsp31087S1087FtCttTt11AY.160.00038
ORF1ab/nsp31087S1087FtCttTt11AY.16.10.00047
ORF1ab/nsp31087S1087FtCttTt11AY.3.10.000085
ORF1ab/nsp31087S1087FtCttTt11AY.330.000067
ORF1ab/nsp31087S1087FtCttTt11AY.39.20.001541
ORF1ab/nsp31087S1087FtCttTt11AY.4.20.000022
ORF1ab/nsp31087S1087FtCttTt11AY.4.50.000107
ORF1ab/nsp31087S1087FtCttTt11AY.46.50.000198
ORF1ab/nsp31087S1087FtCttTt11AY.480.000465
ORF1ab/nsp31087S1087FtCttTt11AY.550.000917
ORF1ab/nsp31087S1087FtCttTt11AY.60.000041
ORF1ab/nsp31087S1087FtCttTt11AY.680.000274
ORF1ab/nsp31087S1087FtCttTt11AY.840.000437
ORF1ab/nsp31087S1087FtCttTt11AY.9.20.000037
ORF1ab/nsp31087S1087FtCttTt11AY.920.000287
ORF1ab/nsp31087S1087FtCttTt11AY.98.10.000048
ORF1ab/nsp31087S1087FtCttTt11B.1.1.1390.022727
ORF1ab/nsp31087S1087FtCttTt11B.1.1.1740.003378
ORF1ab/nsp31087S1087FtCttTt11B.1.1.3060.000438
ORF1ab/nsp31087S1087FtCttTt11B.1.1.3120.001912
ORF1ab/nsp31087S1087FtCttTt11B.1.1.330.000421
ORF1ab/nsp31087S1087FtCttTt11B.1.1.340.013158
ORF1ab/nsp31087S1087FtCttTt11B.1.1.3740.002375
ORF1ab/nsp31087S1087FtCttTt11B.1.1.4090.002833
ORF1ab/nsp31087S1087FtCttTt11B.1.1.4380.05
ORF1ab/nsp31087S1087FtCttTt11B.1.1.4420.018519
ORF1ab/nsp31087S1087FtCttTt11B.1.160.260.002421
ORF1ab/nsp31087S1087FtCttTt11B.1.177.520.001757
ORF1ab/nsp31087S1087FtCttTt11B.1.177.650.000665
ORF1ab/nsp31087S1087FtCttTt11B.1.177.70.000165
ORF1ab/nsp31087S1087FtCttTt11B.1.177.770.000726
ORF1ab/nsp31087S1087FtCttTt11B.1.177.820.000477
ORF1ab/nsp31087S1087FtCttTt11B.1.214.30.007143
ORF1ab/nsp31087S1087FtCttTt11B.1.221.10.002907
ORF1ab/nsp31087S1087FtCttTt11B.1.2390.001221
ORF1ab/nsp31087S1087FtCttTt11B.1.2430.00007
ORF1ab/nsp31087S1087FtCttTt11B.1.3490.000715
ORF1ab/nsp31087S1087FtCttTt11B.1.3570.009524
ORF1ab/nsp31087S1087FtCttTt11B.1.36.100.004785
ORF1ab/nsp31087S1087FtCttTt11B.1.36.290.000517
ORF1ab/nsp31087S1087FtCttTt11B.1.3820.008929
ORF1ab/nsp31087S1087FtCttTt11B.1.4270.00005
ORF1ab/nsp31087S1087FtCttTt11B.1.4970.000315
ORF1ab/nsp31087S1087FtCttTt11B.1.5550.022222
ORF1ab/nsp31087S1087FtCttTt11B.1.6090.000479
ORF1ab/nsp31087S1087FtCttTt11B.1.6230.000536
ORF1ab/nsp31087S1087FtCttTt11B.1.6370.000073
ORF1ab/nsp31087S1087FtCttTt11B.1.930.000934
ORF1ab/nsp31087S1087FtCttTt11B.290.003509
ORF1ab/nsp31087S1087FtCttTt11C.160.00106
ORF1ab/nsp31087S1087FtCttTt11C.360.000911
ORF1ab/nsp31087S1087FtCttTt11C.370.000116
ORF1ab/nsp31087S1087FtCttTt11D.20.000075
ORF1ab/nsp31087S1087FtCttTt11P.1.10.000318
ORF1ab/nsp31087S1087FtCttTt11P.1.100.000269
ORF1ab/nsp31087S1087FtCttTt11P.1.170.000162
ORF1ab/nsp31087S1087FtCttTt11P.1.70.000319
ORF1ab/nsp31087S1087FtCttTt11P.30.001595
ORF1ab/nsp31087S1087FtCttTt11U.30.003861

CoV-GLUE is still in development. CoV-GLUE was originally developed as part of COG-UK by Josh Singer using the GLUE framework at the MRC-University of Glasgow Centre for Virus Research (CVR). In 2021 it was redeveloped by Richard Orton to scale to the millions of genome sequences available. We acknowledge support from the MRC (MC_UU_12014/12), WT (220977/Z/20/Z) and UKRI G2P (MR/W005611/1). Please contact Richard Orton with any queries: Richard.Orton@glasgow.ac.uk

CoV-GLUE uses sequence data from GISAID. GISAID data provided via this web application is subject to GISAID's Terms and Conditions.