CoV-GLUEGenomeCountriesLineagesMutationsInsertionsDeletionsUpdated:

CoV-GLUE | Mutations | Mutation

CoV-GLUE Mutation: ORF = ORF1ab/nsp3 : CodonNum = 1087 & Codon = ---

Details of the codons used for the mutation across all lineages (CodonProp is the proportion each codon is used for this AA mutation):

ORFCodonNumMutORF1abMutMutTypeRefCodonMutCodonAACountCodonCountCodonPropGenome Position
ORF1ab/nsp31087S1087delS1905deldelTCT---13313315978-5980

Details of the mutation no within lineages (LineageCodonProp is the proportion the codon is observed at, at this particular site, on each lineage):

ORFCodonNumMutRefCodonMutCodonCodonCountAACountLineageLineageCodonProp
ORF1ab/nsp31087S1087delTCT---133133All0.000025
ORF1ab/nsp31087S1087delTCT---5151B.1.1.70.000046
ORF1ab/nsp31087S1087delTCT---1010B.1.617.20.000038
ORF1ab/nsp31087S1087delTCT---88AY.40.000012
ORF1ab/nsp31087S1087delTCT---77AY.250.000042
ORF1ab/nsp31087S1087delTCT---77B.1.10.000127
ORF1ab/nsp31087S1087delTCT---55AY.430.000022
ORF1ab/nsp31087S1087delTCT---44AY.440.000024
ORF1ab/nsp31087S1087delTCT---33B.10.000027
ORF1ab/nsp31087S1087delTCT---22AY.9.20.000073
ORF1ab/nsp31087S1087delTCT---22B.1.1770.000026
ORF1ab/nsp31087S1087delTCT---22B.1.20.000018
ORF1ab/nsp31087S1087delTCT---22C.370.000232
ORF1ab/nsp31087S1087delTCT---22P.10.000032
ORF1ab/nsp31087S1087delTCT---11AD.20.000219
ORF1ab/nsp31087S1087delTCT---11AY.1020.000027
ORF1ab/nsp31087S1087delTCT---11AY.1130.000142
ORF1ab/nsp31087S1087delTCT---11AY.290.000016
ORF1ab/nsp31087S1087delTCT---11AY.360.000148
ORF1ab/nsp31087S1087delTCT---11AY.4.30.000842
ORF1ab/nsp31087S1087delTCT---11AY.46.60.000072
ORF1ab/nsp31087S1087delTCT---11AY.5.30.000337
ORF1ab/nsp31087S1087delTCT---11AY.540.000095
ORF1ab/nsp31087S1087delTCT---11AY.610.000105
ORF1ab/nsp31087S1087delTCT---11AY.650.000533
ORF1ab/nsp31087S1087delTCT---11AY.660.00107
ORF1ab/nsp31087S1087delTCT---11AY.670.000464
ORF1ab/nsp31087S1087delTCT---11AY.750.000056
ORF1ab/nsp31087S1087delTCT---11AY.850.000427
ORF1ab/nsp31087S1087delTCT---11AY.98.10.000048
ORF1ab/nsp31087S1087delTCT---11AZ.20.000821
ORF1ab/nsp31087S1087delTCT---11B.1.1.2070.001182
ORF1ab/nsp31087S1087delTCT---11B.1.1.4090.002833
ORF1ab/nsp31087S1087delTCT---11B.1.177.320.00135
ORF1ab/nsp31087S1087delTCT---11B.1.2580.000067
ORF1ab/nsp31087S1087delTCT---11B.1.3510.00003
ORF1ab/nsp31087S1087delTCT---11B.1.416.10.001563
ORF1ab/nsp31087S1087delTCT---11B.1.5260.000024
ORF1ab/nsp31087S1087delTCT---11B.150.017544
ORF1ab/nsp31087S1087delTCT---11C.360.000911
ORF1ab/nsp31087S1087delTCT---11P.1.10.000318
ORF1ab/nsp31087S1087delTCT---11Q.20.000613

CoV-GLUE is still in development. CoV-GLUE was originally developed as part of COG-UK by Josh Singer using the GLUE framework at the MRC-University of Glasgow Centre for Virus Research (CVR). In 2021 it was redeveloped by Richard Orton to scale to the millions of genome sequences available. We acknowledge support from the MRC (MC_UU_12014/12), WT (220977/Z/20/Z) and UKRI G2P (MR/W005611/1). Please contact Richard Orton with any queries: Richard.Orton@glasgow.ac.uk

CoV-GLUE uses sequence data from GISAID. GISAID data provided via this web application is subject to GISAID's Terms and Conditions.