CoV-GLUEGenomeCountriesLineagesMutationsInsertionsDeletionsUpdated:

CoV-GLUE | Mutations | Mutation

CoV-GLUE Mutation: ORF = ORF1ab/nsp3 : CodonNum = 1085 & Codon = gaT

Details of the codons used for the mutation across all lineages (CodonProp is the proportion each codon is used for this AA mutation):

ORFCodonNumMutORF1abMutMutTypeRefCodonMutCodonAACountCodonCountCodonPropGenome Position
ORF1ab/nsp31085D1085DD1903DsyngaCgaT4401440115972-5974

Details of the mutation no within lineages (LineageCodonProp is the proportion the codon is observed at, at this particular site, on each lineage):

ORFCodonNumMutRefCodonMutCodonCodonCountAACountLineageLineageCodonProp
ORF1ab/nsp31085D1085DgaCgaT44014401All0.000842
ORF1ab/nsp31085D1085DgaCgaT10211021B.1.1.70.000914
ORF1ab/nsp31085D1085DgaCgaT665665B.1.1.5190.026408
ORF1ab/nsp31085D1085DgaCgaT346346AY.40.000539
ORF1ab/nsp31085D1085DgaCgaT216216B.1.20.001902
ORF1ab/nsp31085D1085DgaCgaT156156AY.1030.000969
ORF1ab/nsp31085D1085DgaCgaT118118B.1.617.20.000444
ORF1ab/nsp31085D1085DgaCgaT106106B.1.1.4281
ORF1ab/nsp31085D1085DgaCgaT9797AY.440.00059
ORF1ab/nsp31085D1085DgaCgaT7979AY.250.000475
ORF1ab/nsp31085D1085DgaCgaT7777B.1.1770.001014
ORF1ab/nsp31085D1085DgaCgaT7373B.1.5260.001716
ORF1ab/nsp31085D1085DgaCgaT5858AY.330.003873
ORF1ab/nsp31085D1085DgaCgaT5757AY.30.000567
ORF1ab/nsp31085D1085DgaCgaT5757AY.430.000253
ORF1ab/nsp31085D1085DgaCgaT5252B.1.10.000943
ORF1ab/nsp31085D1085DgaCgaT5252B.1.1.280.016184
ORF1ab/nsp31085D1085DgaCgaT4747B.1.4290.001106
ORF1ab/nsp31085D1085DgaCgaT4343B.1.438.40.914894
ORF1ab/nsp31085D1085DgaCgaT4141B.10.000376
ORF1ab/nsp31085D1085DgaCgaT4040B.1.1.2140.002218
ORF1ab/nsp31085D1085DgaCgaT3939B.1.4270.001969
ORF1ab/nsp31085D1085DgaCgaT3636B.1.3510.00107
ORF1ab/nsp31085D1085DgaCgaT3636P.10.000567
ORF1ab/nsp31085D1085DgaCgaT3434AY.290.000536
ORF1ab/nsp31085D1085DgaCgaT3333AY.1020.000875
ORF1ab/nsp31085D1085DgaCgaT3333AY.390.000815
ORF1ab/nsp31085D1085DgaCgaT2525B.1.2580.001664
ORF1ab/nsp31085D1085DgaCgaT2424B.1.1600.000749
ORF1ab/nsp31085D1085DgaCgaT2222B.1.4380.143791
ORF1ab/nsp31085D1085DgaCgaT2020AY.70.00392
ORF1ab/nsp31085D1085DgaCgaT1919AY.90.001284
ORF1ab/nsp31085D1085DgaCgaT1919P.20.003546
ORF1ab/nsp31085D1085DgaCgaT1818B.1.177.860.003302
ORF1ab/nsp31085D1085DgaCgaT1818B.1.2210.001279
ORF1ab/nsp31085D1085DgaCgaT1717AY.750.000952
ORF1ab/nsp31085D1085DgaCgaT1717B.1.177.70.002803
ORF1ab/nsp31085D1085DgaCgaT1414P.1.120.006776
ORF1ab/nsp31085D1085DgaCgaT1313B.1.2430.000905
ORF1ab/nsp31085D1085DgaCgaT1212AY.1000.000552
ORF1ab/nsp31085D1085DgaCgaT1212B.1.2410.00974
ORF1ab/nsp31085D1085DgaCgaT1212B.1.36.180.005042
ORF1ab/nsp31085D1085DgaCgaT1111B.1.1.841
ORF1ab/nsp31085D1085DgaCgaT1010AY.260.000283
ORF1ab/nsp31085D1085DgaCgaT99AY.140.000792
ORF1ab/nsp31085D1085DgaCgaT99AY.420.000362
ORF1ab/nsp31085D1085DgaCgaT99B.1.1.2910.006682
ORF1ab/nsp31085D1085DgaCgaT88AY.200.000311
ORF1ab/nsp31085D1085DgaCgaT88AY.50.000165
ORF1ab/nsp31085D1085DgaCgaT88R.10.00072
ORF1ab/nsp31085D1085DgaCgaT77AY.4.20.000152
ORF1ab/nsp31085D1085DgaCgaT77AY.60.000288
ORF1ab/nsp31085D1085DgaCgaT77AY.850.00299
ORF1ab/nsp31085D1085DgaCgaT77B.1.1.10.002287
ORF1ab/nsp31085D1085DgaCgaT77B.1.1.2220.001428
ORF1ab/nsp31085D1085DgaCgaT77B.1.1.370.00135
ORF1ab/nsp31085D1085DgaCgaT77P.1.150.001626
ORF1ab/nsp31085D1085DgaCgaT77P.1.70.002235
ORF1ab/nsp31085D1085DgaCgaT66AY.1190.000212
ORF1ab/nsp31085D1085DgaCgaT66AY.460.000624
ORF1ab/nsp31085D1085DgaCgaT66AY.840.002625
ORF1ab/nsp31085D1085DgaCgaT66AY.9.20.00022
ORF1ab/nsp31085D1085DgaCgaT66B.1.1.2690.008119
ORF1ab/nsp31085D1085DgaCgaT66B.1.1.4340.002091
ORF1ab/nsp31085D1085DgaCgaT66B.1.258.170.000624
ORF1ab/nsp31085D1085DgaCgaT66B.1.5960.000523
ORF1ab/nsp31085D1085DgaCgaT66B.1.6210.000531
ORF1ab/nsp31085D1085DgaCgaT66B.230.017544
ORF1ab/nsp31085D1085DgaCgaT55AY.1100.000563
ORF1ab/nsp31085D1085DgaCgaT55AY.1200.000186
ORF1ab/nsp31085D1085DgaCgaT55AY.670.002321
ORF1ab/nsp31085D1085DgaCgaT55AY.700.001043
ORF1ab/nsp31085D1085DgaCgaT55AY.9.10.000419
ORF1ab/nsp31085D1085DgaCgaT55B.1.1.1890.007564
ORF1ab/nsp31085D1085DgaCgaT55B.1.1.250.002843
ORF1ab/nsp31085D1085DgaCgaT55B.1.1.3180.001509
ORF1ab/nsp31085D1085DgaCgaT55B.1.177.330.008224
ORF1ab/nsp31085D1085DgaCgaT55B.1.177.830.007407
ORF1ab/nsp31085D1085DgaCgaT55B.1.5090.004329
ORF1ab/nsp31085D1085DgaCgaT55B.1.6230.002682
ORF1ab/nsp31085D1085DgaCgaT55C.50.454545
ORF1ab/nsp31085D1085DgaCgaT44AY.230.000279
ORF1ab/nsp31085D1085DgaCgaT44AY.450.000487
ORF1ab/nsp31085D1085DgaCgaT44AY.470.000124
ORF1ab/nsp31085D1085DgaCgaT44AY.620.001743
ORF1ab/nsp31085D1085DgaCgaT44B.1.1.580.021505
ORF1ab/nsp31085D1085DgaCgaT44B.1.1730.105263
ORF1ab/nsp31085D1085DgaCgaT44B.1.2340.000528
ORF1ab/nsp31085D1085DgaCgaT44B.1.2790.002054
ORF1ab/nsp31085D1085DgaCgaT44B.1.360.000584
ORF1ab/nsp31085D1085DgaCgaT44Q.40.001819
ORF1ab/nsp31085D1085DgaCgaT44Q.80.00066
ORF1ab/nsp31085D1085DgaCgaT33AY.10.001187
ORF1ab/nsp31085D1085DgaCgaT33AY.1170.000254
ORF1ab/nsp31085D1085DgaCgaT33AY.1210.000406
ORF1ab/nsp31085D1085DgaCgaT33AY.29.10.000662
ORF1ab/nsp31085D1085DgaCgaT33AY.39.20.004622
ORF1ab/nsp31085D1085DgaCgaT33AY.610.000314
ORF1ab/nsp31085D1085DgaCgaT33AY.740.000347
ORF1ab/nsp31085D1085DgaCgaT33AY.75.10.000541
ORF1ab/nsp31085D1085DgaCgaT33B.1.1.1740.010135
ORF1ab/nsp31085D1085DgaCgaT33B.1.1.3170.001235
ORF1ab/nsp31085D1085DgaCgaT33B.1.177.210.000229
ORF1ab/nsp31085D1085DgaCgaT33B.1.1890.012876
ORF1ab/nsp31085D1085DgaCgaT33B.1.258.40.010345
ORF1ab/nsp31085D1085DgaCgaT33B.1.3110.000824
ORF1ab/nsp31085D1085DgaCgaT33B.1.5250.000339
ORF1ab/nsp31085D1085DgaCgaT33B.1.5610.001191
ORF1ab/nsp31085D1085DgaCgaT33B.1.60.051724
ORF1ab/nsp31085D1085DgaCgaT33B.1.6090.001438
ORF1ab/nsp31085D1085DgaCgaT33B.1.617.10.000387
ORF1ab/nsp31085D1085DgaCgaT33C.370.000348
ORF1ab/nsp31085D1085DgaCgaT33P.1.140.000143
ORF1ab/nsp31085D1085DgaCgaT22A.2.50.000998
ORF1ab/nsp31085D1085DgaCgaT22A.23.10.001408
ORF1ab/nsp31085D1085DgaCgaT22AD.20.000438
ORF1ab/nsp31085D1085DgaCgaT22AY.1010.000981
ORF1ab/nsp31085D1085DgaCgaT22AY.1080.002205
ORF1ab/nsp31085D1085DgaCgaT22AY.116.10.000623
ORF1ab/nsp31085D1085DgaCgaT22AY.160.000759
ORF1ab/nsp31085D1085DgaCgaT22AY.3.10.000171
ORF1ab/nsp31085D1085DgaCgaT22AY.320.001065
ORF1ab/nsp31085D1085DgaCgaT22AY.34.10.00102
ORF1ab/nsp31085D1085DgaCgaT22AY.360.000296
ORF1ab/nsp31085D1085DgaCgaT22AY.39.10.000079
ORF1ab/nsp31085D1085DgaCgaT22AY.4.50.000215
ORF1ab/nsp31085D1085DgaCgaT22AY.590.001059
ORF1ab/nsp31085D1085DgaCgaT22AY.7.10.000225
ORF1ab/nsp31085D1085DgaCgaT22AY.98.10.000097
ORF1ab/nsp31085D1085DgaCgaT22AY.99.20.000184
ORF1ab/nsp31085D1085DgaCgaT22B.1.1.2190.01
ORF1ab/nsp31085D1085DgaCgaT22B.1.1.2200.003717
ORF1ab/nsp31085D1085DgaCgaT22B.1.1.2290.011494
ORF1ab/nsp31085D1085DgaCgaT22B.1.1.2840.000215
ORF1ab/nsp31085D1085DgaCgaT22B.1.1.3290.007692
ORF1ab/nsp31085D1085DgaCgaT22B.1.1.3620.011236
ORF1ab/nsp31085D1085DgaCgaT22B.1.1.4090.005666
ORF1ab/nsp31085D1085DgaCgaT22B.1.1.700.000682
ORF1ab/nsp31085D1085DgaCgaT22B.1.110.30.001437
ORF1ab/nsp31085D1085DgaCgaT22B.1.177.260.013986
ORF1ab/nsp31085D1085DgaCgaT22B.1.177.290.133333
ORF1ab/nsp31085D1085DgaCgaT22B.1.177.700.011834
ORF1ab/nsp31085D1085DgaCgaT22B.1.2120.033333
ORF1ab/nsp31085D1085DgaCgaT22B.1.351.20.000605
ORF1ab/nsp31085D1085DgaCgaT22B.1.36.310.003503
ORF1ab/nsp31085D1085DgaCgaT22B.1.3970.009709
ORF1ab/nsp31085D1085DgaCgaT22B.1.4700.002809
ORF1ab/nsp31085D1085DgaCgaT22B.1.5470.04878
ORF1ab/nsp31085D1085DgaCgaT22B.1.5640.000852
ORF1ab/nsp31085D1085DgaCgaT22B.310.007463
ORF1ab/nsp31085D1085DgaCgaT22B.400.000729
ORF1ab/nsp31085D1085DgaCgaT22P.1.160.000748
ORF1ab/nsp31085D1085DgaCgaT22W.30.010526
ORF1ab/nsp31085D1085DgaCgaT11A.10.000282
ORF1ab/nsp31085D1085DgaCgaT11A.2.40.003367
ORF1ab/nsp31085D1085DgaCgaT11A.50.001923
ORF1ab/nsp31085D1085DgaCgaT11AY.1070.000466
ORF1ab/nsp31085D1085DgaCgaT11AY.1160.000287
ORF1ab/nsp31085D1085DgaCgaT11AY.1180.000063
ORF1ab/nsp31085D1085DgaCgaT11AY.120.000316
ORF1ab/nsp31085D1085DgaCgaT11AY.190.00114
ORF1ab/nsp31085D1085DgaCgaT11AY.220.002092
ORF1ab/nsp31085D1085DgaCgaT11AY.240.000431
ORF1ab/nsp31085D1085DgaCgaT11AY.300.000396
ORF1ab/nsp31085D1085DgaCgaT11AY.340.000097
ORF1ab/nsp31085D1085DgaCgaT11AY.4.2.10.000149
ORF1ab/nsp31085D1085DgaCgaT11AY.46.20.000635
ORF1ab/nsp31085D1085DgaCgaT11AY.46.40.000165
ORF1ab/nsp31085D1085DgaCgaT11AY.46.50.000198
ORF1ab/nsp31085D1085DgaCgaT11AY.480.000465
ORF1ab/nsp31085D1085DgaCgaT11AY.5.30.000337
ORF1ab/nsp31085D1085DgaCgaT11AY.5.40.000277
ORF1ab/nsp31085D1085DgaCgaT11AY.510.000909
ORF1ab/nsp31085D1085DgaCgaT11AY.540.000095
ORF1ab/nsp31085D1085DgaCgaT11AY.580.000907
ORF1ab/nsp31085D1085DgaCgaT11AY.690.000187
ORF1ab/nsp31085D1085DgaCgaT11AY.760.004831
ORF1ab/nsp31085D1085DgaCgaT11AY.770.001127
ORF1ab/nsp31085D1085DgaCgaT11AY.870.000833
ORF1ab/nsp31085D1085DgaCgaT11AY.890.004902
ORF1ab/nsp31085D1085DgaCgaT11AY.920.000287
ORF1ab/nsp31085D1085DgaCgaT11AY.930.000273
ORF1ab/nsp31085D1085DgaCgaT11AY.950.000761
ORF1ab/nsp31085D1085DgaCgaT11B0.000128
ORF1ab/nsp31085D1085DgaCgaT11B.1.1.1570.000913
ORF1ab/nsp31085D1085DgaCgaT11B.1.1.1980.001468
ORF1ab/nsp31085D1085DgaCgaT11B.1.1.2160.00089
ORF1ab/nsp31085D1085DgaCgaT11B.1.1.2630.001558
ORF1ab/nsp31085D1085DgaCgaT11B.1.1.2770.000759
ORF1ab/nsp31085D1085DgaCgaT11B.1.1.2790.001121
ORF1ab/nsp31085D1085DgaCgaT11B.1.1.2860.002899
ORF1ab/nsp31085D1085DgaCgaT11B.1.1.3020.002075
ORF1ab/nsp31085D1085DgaCgaT11B.1.1.3060.000438
ORF1ab/nsp31085D1085DgaCgaT11B.1.1.3110.000358
ORF1ab/nsp31085D1085DgaCgaT11B.1.1.3690.000446
ORF1ab/nsp31085D1085DgaCgaT11B.1.1.3850.004464
ORF1ab/nsp31085D1085DgaCgaT11B.1.1.3970.002252
ORF1ab/nsp31085D1085DgaCgaT11B.1.1.4480.002033
ORF1ab/nsp31085D1085DgaCgaT11B.1.1110.001175
ORF1ab/nsp31085D1085DgaCgaT11B.1.160.160.000929
ORF1ab/nsp31085D1085DgaCgaT11B.1.177.190.001431
ORF1ab/nsp31085D1085DgaCgaT11B.1.177.600.000218
ORF1ab/nsp31085D1085DgaCgaT11B.1.177.630.002703
ORF1ab/nsp31085D1085DgaCgaT11B.1.177.80.000752
ORF1ab/nsp31085D1085DgaCgaT11B.1.22.10.03125
ORF1ab/nsp31085D1085DgaCgaT11B.1.2290.009709
ORF1ab/nsp31085D1085DgaCgaT11B.1.2400.000216
ORF1ab/nsp31085D1085DgaCgaT11B.1.3290.000608
ORF1ab/nsp31085D1085DgaCgaT11B.1.36.100.004785
ORF1ab/nsp31085D1085DgaCgaT11B.1.36.260.002857
ORF1ab/nsp31085D1085DgaCgaT11B.1.36.280.005747
ORF1ab/nsp31085D1085DgaCgaT11B.1.36.80.001
ORF1ab/nsp31085D1085DgaCgaT11B.1.3620.001541
ORF1ab/nsp31085D1085DgaCgaT11B.1.3670.000792
ORF1ab/nsp31085D1085DgaCgaT11B.1.3750.00082
ORF1ab/nsp31085D1085DgaCgaT11B.1.4260.001009
ORF1ab/nsp31085D1085DgaCgaT11B.1.4320.011236
ORF1ab/nsp31085D1085DgaCgaT11B.1.4330.003195
ORF1ab/nsp31085D1085DgaCgaT11B.1.438.10.000107
ORF1ab/nsp31085D1085DgaCgaT11B.1.4990.00105
ORF1ab/nsp31085D1085DgaCgaT11B.1.5230.002451
ORF1ab/nsp31085D1085DgaCgaT11B.1.5300.007143
ORF1ab/nsp31085D1085DgaCgaT11B.1.5510.00129
ORF1ab/nsp31085D1085DgaCgaT11B.1.5750.000303
ORF1ab/nsp31085D1085DgaCgaT11B.1.575.10.002439
ORF1ab/nsp31085D1085DgaCgaT11B.1.5760.000907
ORF1ab/nsp31085D1085DgaCgaT11B.1.5950.000261
ORF1ab/nsp31085D1085DgaCgaT11B.1.617.30.002985
ORF1ab/nsp31085D1085DgaCgaT11B.1.6200.000946
ORF1ab/nsp31085D1085DgaCgaT11B.1.621.10.000506
ORF1ab/nsp31085D1085DgaCgaT11B.1.6280.000352
ORF1ab/nsp31085D1085DgaCgaT11B.1.6370.000073
ORF1ab/nsp31085D1085DgaCgaT11B.300.014706
ORF1ab/nsp31085D1085DgaCgaT11C.10.002392
ORF1ab/nsp31085D1085DgaCgaT11C.170.055556
ORF1ab/nsp31085D1085DgaCgaT11C.360.000911
ORF1ab/nsp31085D1085DgaCgaT11C.80.004464
ORF1ab/nsp31085D1085DgaCgaT11P.1.100.000269
ORF1ab/nsp31085D1085DgaCgaT11P.1.170.000162
ORF1ab/nsp31085D1085DgaCgaT11Q.10.000126

CoV-GLUE is still in development. CoV-GLUE was originally developed as part of COG-UK by Josh Singer using the GLUE framework at the MRC-University of Glasgow Centre for Virus Research (CVR). In 2021 it was redeveloped by Richard Orton to scale to the millions of genome sequences available. We acknowledge support from the MRC (MC_UU_12014/12), WT (220977/Z/20/Z) and UKRI G2P (MR/W005611/1). Please contact Richard Orton with any queries: Richard.Orton@glasgow.ac.uk

CoV-GLUE uses sequence data from GISAID. GISAID data provided via this web application is subject to GISAID's Terms and Conditions.