CoV-GLUE | Mutations | Mutation
Details of the codons used for the mutation across all lineages (CodonProp is the proportion each codon is used for this AA mutation):
ORF | CodonNum | Mut | ORF1abMut | MutType | RefCodon | MutCodon | AACount | CodonCount | CodonProp | Genome Position |
ORF1ab/nsp3 | 1080 | N1080S | N1898S | nonsyn | aAt | aGt | 497 | 493 | 0.991952 | 5957-5959 |
ORF1ab/nsp3 | 1080 | N1080S | N1898S | nonsyn | AAt | TCt | 497 | 3 | 0.00603622 | 5957-5959 |
ORF1ab/nsp3 | 1080 | N1080S | N1898S | nonsyn | AAT | TCC | 497 | 1 | 0.00201207 | 5957-5959 |
ORF1ab/nsp3 | 1080 | N1080K | N1898K | nonsyn | aaT | aaG | 146 | 138 | 0.945205 | 5957-5959 |
ORF1ab/nsp3 | 1080 | N1080K | N1898K | nonsyn | aaT | aaA | 146 | 8 | 0.0547945 | 5957-5959 |
ORF1ab/nsp3 | 1080 | N1080T | N1898T | nonsyn | aAt | aCt | 143 | 143 | 1 | 5957-5959 |
ORF1ab/nsp3 | 1080 | N1080del | N1898del | del | AAT | --- | 142 | 142 | 1 | 5957-5959 |
ORF1ab/nsp3 | 1080 | N1080N | N1898N | syn | aaT | aaC | 139 | 139 | 1 | 5957-5959 |
ORF1ab/nsp3 | 1080 | N1080Y | N1898Y | nonsyn | Aat | Tat | 139 | 137 | 0.985611 | 5957-5959 |
ORF1ab/nsp3 | 1080 | N1080Y | N1898Y | nonsyn | AaT | TaC | 139 | 2 | 0.0143885 | 5957-5959 |
ORF1ab/nsp3 | 1080 | N1080D | N1898D | nonsyn | Aat | Gat | 85 | 85 | 1 | 5957-5959 |
ORF1ab/nsp3 | 1080 | N1080H | N1898H | nonsyn | Aat | Cat | 44 | 44 | 1 | 5957-5959 |
ORF1ab/nsp3 | 1080 | N1080I | N1898I | nonsyn | aAt | aTt | 19 | 19 | 1 | 5957-5959 |
ORF1ab/nsp3 | 1080 | N1080del2 | N1898del2 | del | aAT | a-- | 13 | 12 | 0.923077 | 5957-5959 |
ORF1ab/nsp3 | 1080 | N1080del2 | N1898del2 | del | AAT | --N | 13 | 1 | 0.0769231 | 5957-5959 |
ORF1ab/nsp3 | 1080 | N1080del1 | N1898del1 | del | aaT | aa- | 8 | 3 | 0.375 | 5957-5959 |
ORF1ab/nsp3 | 1080 | N1080del1 | N1898del1 | del | AAT | -NN | 8 | 2 | 0.25 | 5957-5959 |
ORF1ab/nsp3 | 1080 | N1080del1 | N1898del1 | del | Aat | -at | 8 | 2 | 0.25 | 5957-5959 |
ORF1ab/nsp3 | 1080 | N1080del1 | N1898del1 | del | AAT | -TW | 8 | 1 | 0.125 | 5957-5959 |
ORF1ab/nsp3 | 1080 | N1080G | N1898G | nonsyn | AAt | GGt | 2 | 2 | 1 | 5957-5959 |
ORF1ab/nsp3 | 1080 | N1080M | N1898M | nonsyn | aAT | aTG | 2 | 2 | 1 | 5957-5959 |
ORF1ab/nsp3 | 1080 | N1080R | N1898R | nonsyn | aAT | aGA | 2 | 2 | 1 | 5957-5959 |
ORF1ab/nsp3 | 1080 | N1080A | N1898A | nonsyn | AAt | GCt | 2 | 2 | 1 | 5957-5959 |
ORF1ab/nsp3 | 1080 | N1080C | N1898C | nonsyn | AAT | TGC | 1 | 1 | 1 | 5957-5959 |
ORF1ab/nsp3 | 1080 | N1080Q | N1898Q | nonsyn | AaT | CaA | 1 | 1 | 1 | 5957-5959 |
Details of the mutation no within lineages (LineageCodonProp is the proportion the codon is observed at, at this particular site, on each lineage):
ORF | CodonNum | Mut | RefCodon | MutCodon | CodonCount | AACount | Lineage | LineageCodonProp |
ORF1ab/nsp3 | 1080 | N1080S | aAt | aGt | 493 | 497 | All | 0.000094 |
ORF1ab/nsp3 | 1080 | N1080S | AAt | TCt | 3 | 497 | All | 0.000001 |
ORF1ab/nsp3 | 1080 | N1080S | AAT | TCC | 1 | 497 | All | 0 |
ORF1ab/nsp3 | 1080 | N1080S | aAt | aGt | 269 | 269 | B.1.1.44 | 0.648193 |
ORF1ab/nsp3 | 1080 | N1080K | aaT | aaG | 138 | 146 | All | 0.000026 |
ORF1ab/nsp3 | 1080 | N1080K | aaT | aaA | 8 | 146 | All | 0.000002 |
ORF1ab/nsp3 | 1080 | N1080T | aAt | aCt | 143 | 143 | All | 0.000027 |
ORF1ab/nsp3 | 1080 | N1080del | AAT | --- | 142 | 142 | All | 0.000027 |
ORF1ab/nsp3 | 1080 | N1080N | aaT | aaC | 139 | 139 | All | 0.000027 |
ORF1ab/nsp3 | 1080 | N1080Y | Aat | Tat | 137 | 139 | All | 0.000026 |
ORF1ab/nsp3 | 1080 | N1080Y | AaT | TaC | 2 | 139 | All | 0 |
ORF1ab/nsp3 | 1080 | N1080S | aAt | aGt | 104 | 104 | B.1.1.7 | 0.000093 |
ORF1ab/nsp3 | 1080 | N1080Y | Aat | Tat | 93 | 93 | B.1.1.7 | 0.000083 |
ORF1ab/nsp3 | 1080 | N1080D | Aat | Gat | 85 | 85 | All | 0.000016 |
ORF1ab/nsp3 | 1080 | N1080del | AAT | --- | 65 | 65 | B.1.1.7 | 0.000058 |
ORF1ab/nsp3 | 1080 | N1080T | aAt | aCt | 53 | 53 | AY.25 | 0.000319 |
ORF1ab/nsp3 | 1080 | N1080H | Aat | Cat | 44 | 44 | All | 0.000008 |
ORF1ab/nsp3 | 1080 | N1080K | aaT | aaG | 44 | 44 | B.1.429 | 0.001035 |
ORF1ab/nsp3 | 1080 | N1080D | Aat | Gat | 36 | 36 | AY.4 | 0.000056 |
ORF1ab/nsp3 | 1080 | N1080S | aAt | aGt | 33 | 33 | AY.4 | 0.000051 |
ORF1ab/nsp3 | 1080 | N1080S | aAt | aGt | 32 | 32 | AY.14 | 0.002816 |
ORF1ab/nsp3 | 1080 | N1080T | aAt | aCt | 32 | 32 | B.1.561 | 0.012703 |
ORF1ab/nsp3 | 1080 | N1080N | aaT | aaC | 32 | 32 | B.1.617.2 | 0.00012 |
ORF1ab/nsp3 | 1080 | N1080K | aaT | aaG | 25 | 25 | B.1.2 | 0.00022 |
ORF1ab/nsp3 | 1080 | N1080N | aaT | aaC | 22 | 22 | C.36.3 | 0.012479 |
ORF1ab/nsp3 | 1080 | N1080H | Aat | Cat | 20 | 20 | AY.4 | 0.000031 |
ORF1ab/nsp3 | 1080 | N1080I | aAt | aTt | 19 | 19 | All | 0.000004 |
ORF1ab/nsp3 | 1080 | N1080T | aAt | aCt | 19 | 19 | B.1.1.7 | 0.000017 |
ORF1ab/nsp3 | 1080 | N1080N | aaT | aaC | 17 | 17 | AY.44 | 0.000103 |
ORF1ab/nsp3 | 1080 | N1080D | Aat | Gat | 16 | 16 | AY.4.2 | 0.000347 |
ORF1ab/nsp3 | 1080 | N1080N | aaT | aaC | 15 | 15 | AY.4 | 0.000023 |
ORF1ab/nsp3 | 1080 | N1080H | Aat | Cat | 14 | 14 | B.1.497 | 0.004407 |
ORF1ab/nsp3 | 1080 | N1080del2 | aAT | a-- | 12 | 13 | All | 0.000002 |
ORF1ab/nsp3 | 1080 | N1080del2 | AAT | --N | 1 | 13 | All | 0 |
ORF1ab/nsp3 | 1080 | N1080D | Aat | Gat | 12 | 12 | B.1.1.7 | 0.000011 |
ORF1ab/nsp3 | 1080 | N1080K | aaT | aaG | 12 | 12 | B.1.177 | 0.000158 |
ORF1ab/nsp3 | 1080 | N1080I | aAt | aTt | 9 | 9 | AY.44 | 0.000055 |
ORF1ab/nsp3 | 1080 | N1080N | aaT | aaC | 9 | 9 | AY.5.4 | 0.00249 |
ORF1ab/nsp3 | 1080 | N1080N | aaT | aaC | 9 | 9 | B.1.1.7 | 0.000008 |
ORF1ab/nsp3 | 1080 | N1080del1 | aaT | aa- | 3 | 8 | All | 0.000001 |
ORF1ab/nsp3 | 1080 | N1080del1 | Aat | -at | 2 | 8 | All | 0 |
ORF1ab/nsp3 | 1080 | N1080del1 | AAT | -NN | 2 | 8 | All | 0 |
ORF1ab/nsp3 | 1080 | N1080del1 | AAT | -TW | 1 | 8 | All | 0 |
ORF1ab/nsp3 | 1080 | N1080T | aAt | aCt | 8 | 8 | AY.30 | 0.003166 |
ORF1ab/nsp3 | 1080 | N1080del | AAT | --- | 8 | 8 | B.1.1 | 0.000145 |
ORF1ab/nsp3 | 1080 | N1080K | aaT | aaG | 8 | 8 | B.1.1.7 | 0.000007 |
ORF1ab/nsp3 | 1080 | N1080K | aaT | aaG | 7 | 7 | AY.103 | 0.000043 |
ORF1ab/nsp3 | 1080 | N1080Y | Aat | Tat | 7 | 7 | B.1.617.2 | 0.000026 |
ORF1ab/nsp3 | 1080 | N1080K | aaT | aaG | 6 | 7 | B.1.617.2 | 0.000023 |
ORF1ab/nsp3 | 1080 | N1080K | aaT | aaA | 1 | 7 | B.1.617.2 | 0.000004 |
ORF1ab/nsp3 | 1080 | N1080del | AAT | --- | 6 | 6 | AY.25 | 0.000036 |
ORF1ab/nsp3 | 1080 | N1080del | AAT | --- | 6 | 6 | AY.43 | 0.000027 |
ORF1ab/nsp3 | 1080 | N1080K | aaT | aaG | 5 | 6 | B.1.1 | 0.000091 |
ORF1ab/nsp3 | 1080 | N1080K | aaT | aaA | 1 | 6 | B.1.1 | 0.000018 |
ORF1ab/nsp3 | 1080 | N1080S | aAt | aGt | 6 | 6 | B.1.36.17 | 0.002964 |
ORF1ab/nsp3 | 1080 | N1080S | aAt | aGt | 5 | 6 | B.1.617.2 | 0.000019 |
ORF1ab/nsp3 | 1080 | N1080S | AAt | TCt | 1 | 6 | B.1.617.2 | 0.000004 |
ORF1ab/nsp3 | 1080 | N1080S | aAt | aGt | 5 | 5 | AY.20 | 0.000194 |
ORF1ab/nsp3 | 1080 | N1080K | aaT | aaG | 5 | 5 | B.1.160 | 0.000156 |
ORF1ab/nsp3 | 1080 | N1080N | aaT | aaC | 5 | 5 | B.1.2 | 0.000044 |
ORF1ab/nsp3 | 1080 | N1080del | AAT | --- | 5 | 5 | B.1.617.2 | 0.000019 |
ORF1ab/nsp3 | 1080 | N1080K | aaT | aaA | 2 | 4 | 0.111111 | |
ORF1ab/nsp3 | 1080 | N1080K | aaT | aaG | 2 | 4 | 0.111111 | |
ORF1ab/nsp3 | 1080 | N1080T | aAt | aCt | 4 | 4 | AY.4 | 0.000006 |
ORF1ab/nsp3 | 1080 | N1080del | AAT | --- | 4 | 4 | AY.4 | 0.000006 |
ORF1ab/nsp3 | 1080 | N1080N | aaT | aaC | 4 | 4 | AY.43 | 0.000018 |
ORF1ab/nsp3 | 1080 | N1080K | aaT | aaG | 4 | 4 | B.1 | 0.000037 |
ORF1ab/nsp3 | 1080 | N1080T | aAt | aCt | 4 | 4 | B.1.2 | 0.000035 |
ORF1ab/nsp3 | 1080 | N1080T | aAt | aCt | 4 | 4 | B.1.617.2 | 0.000015 |
ORF1ab/nsp3 | 1080 | N1080Y | Aat | Tat | 4 | 4 | P.1.14 | 0.000191 |
ORF1ab/nsp3 | 1080 | N1080Y | Aat | Tat | 3 | 3 | AY.103 | 0.000019 |
ORF1ab/nsp3 | 1080 | N1080N | aaT | aaC | 3 | 3 | AY.119 | 0.000106 |
ORF1ab/nsp3 | 1080 | N1080del | AAT | --- | 3 | 3 | AY.33 | 0.0002 |
ORF1ab/nsp3 | 1080 | N1080Y | Aat | Tat | 3 | 3 | AY.4 | 0.000005 |
ORF1ab/nsp3 | 1080 | N1080Y | Aat | Tat | 2 | 3 | AY.43 | 0.000009 |
ORF1ab/nsp3 | 1080 | N1080Y | AaT | TaC | 1 | 3 | AY.43 | 0.000004 |
ORF1ab/nsp3 | 1080 | N1080S | aAt | aGt | 3 | 3 | AY.44 | 0.000018 |
ORF1ab/nsp3 | 1080 | N1080del2 | aAT | a-- | 3 | 3 | AY.9.2 | 0.00011 |
ORF1ab/nsp3 | 1080 | N1080T | aAt | aCt | 3 | 3 | B.1 | 0.000027 |
ORF1ab/nsp3 | 1080 | N1080del | AAT | --- | 3 | 3 | B.1 | 0.000027 |
ORF1ab/nsp3 | 1080 | N1080S | aAt | aGt | 3 | 3 | B.1 | 0.000027 |
ORF1ab/nsp3 | 1080 | N1080del1 | AAT | -NN | 2 | 3 | B.1.1.7 | 0.000002 |
ORF1ab/nsp3 | 1080 | N1080del1 | aaT | aa- | 1 | 3 | B.1.1.7 | 0.000001 |
ORF1ab/nsp3 | 1080 | N1080T | aAt | aCt | 3 | 3 | B.1.240 | 0.000647 |
ORF1ab/nsp3 | 1080 | N1080N | aaT | aaC | 3 | 3 | B.1.313 | 0.019737 |
ORF1ab/nsp3 | 1080 | N1080Y | Aat | Tat | 3 | 3 | B.1.351 | 0.000089 |
ORF1ab/nsp3 | 1080 | N1080S | aAt | aGt | 3 | 3 | B.1.429 | 0.000071 |
ORF1ab/nsp3 | 1080 | N1080D | Aat | Gat | 3 | 3 | B.1.521 | 0.014925 |
ORF1ab/nsp3 | 1080 | N1080Y | Aat | Tat | 3 | 3 | B.1.526 | 0.000071 |
ORF1ab/nsp3 | 1080 | N1080Y | Aat | Tat | 3 | 3 | B.1.617.1 | 0.000387 |
ORF1ab/nsp3 | 1080 | N1080D | Aat | Gat | 3 | 3 | B.1.617.2 | 0.000011 |
ORF1ab/nsp3 | 1080 | N1080del2 | aAT | a-- | 3 | 3 | B.1.617.2 | 0.000011 |
ORF1ab/nsp3 | 1080 | N1080N | aaT | aaC | 2 | 2 | 0.111111 | |
ORF1ab/nsp3 | 1080 | N1080R | aAT | aGA | 2 | 2 | All | 0 |
ORF1ab/nsp3 | 1080 | N1080G | AAt | GGt | 2 | 2 | All | 0 |
ORF1ab/nsp3 | 1080 | N1080M | aAT | aTG | 2 | 2 | All | 0 |
ORF1ab/nsp3 | 1080 | N1080A | AAt | GCt | 2 | 2 | All | 0 |
ORF1ab/nsp3 | 1080 | N1080N | aaT | aaC | 2 | 2 | AY.102 | 0.000053 |
ORF1ab/nsp3 | 1080 | N1080T | aAt | aCt | 2 | 2 | AY.102 | 0.000053 |
ORF1ab/nsp3 | 1080 | N1080Y | AaT | TaC | 1 | 2 | AY.102 | 0.000027 |
ORF1ab/nsp3 | 1080 | N1080S | AAT | TCC | 1 | 2 | AY.102 | 0.000027 |
ORF1ab/nsp3 | 1080 | N1080Y | Aat | Tat | 1 | 2 | AY.102 | 0.000027 |
ORF1ab/nsp3 | 1080 | N1080S | AAt | TCt | 1 | 2 | AY.102 | 0.000027 |
ORF1ab/nsp3 | 1080 | N1080N | aaT | aaC | 2 | 2 | AY.20 | 0.000078 |
ORF1ab/nsp3 | 1080 | N1080Y | Aat | Tat | 2 | 2 | AY.25 | 0.000012 |
ORF1ab/nsp3 | 1080 | N1080N | aaT | aaC | 2 | 2 | AY.3 | 0.00002 |
ORF1ab/nsp3 | 1080 | N1080D | Aat | Gat | 2 | 2 | AY.43 | 0.000009 |
ORF1ab/nsp3 | 1080 | N1080del | AAT | --- | 2 | 2 | AY.67 | 0.000929 |
ORF1ab/nsp3 | 1080 | N1080K | aaT | aaG | 2 | 2 | AY.69 | 0.000373 |
ORF1ab/nsp3 | 1080 | N1080del2 | aAT | a-- | 2 | 2 | AY.75 | 0.000112 |
ORF1ab/nsp3 | 1080 | N1080Y | Aat | Tat | 2 | 2 | AY.98 | 0.000158 |
ORF1ab/nsp3 | 1080 | N1080D | Aat | Gat | 2 | 2 | B.1 | 0.000018 |
ORF1ab/nsp3 | 1080 | N1080Y | Aat | Tat | 2 | 2 | B.1 | 0.000018 |
ORF1ab/nsp3 | 1080 | N1080S | aAt | aGt | 2 | 2 | B.1.1.28 | 0.000622 |
ORF1ab/nsp3 | 1080 | N1080H | Aat | Cat | 2 | 2 | B.1.1.7 | 0.000002 |
ORF1ab/nsp3 | 1080 | N1080I | aAt | aTt | 2 | 2 | B.1.1.7 | 0.000002 |
ORF1ab/nsp3 | 1080 | N1080del2 | aAT | a-- | 1 | 2 | B.1.1.7 | 0.000001 |
ORF1ab/nsp3 | 1080 | N1080del2 | AAT | --N | 1 | 2 | B.1.1.7 | 0.000001 |
ORF1ab/nsp3 | 1080 | N1080del | AAT | --- | 2 | 2 | B.1.177 | 0.000026 |
ORF1ab/nsp3 | 1080 | N1080S | aAt | aGt | 2 | 2 | B.1.177 | 0.000026 |
ORF1ab/nsp3 | 1080 | N1080del | AAT | --- | 2 | 2 | B.1.2 | 0.000018 |
ORF1ab/nsp3 | 1080 | N1080D | Aat | Gat | 2 | 2 | B.1.258 | 0.000133 |
ORF1ab/nsp3 | 1080 | N1080del1 | Aat | -at | 1 | 2 | B.1.36.8 | 0.001 |
ORF1ab/nsp3 | 1080 | N1080del1 | aaT | aa- | 1 | 2 | B.1.36.8 | 0.001 |
ORF1ab/nsp3 | 1080 | N1080T | aAt | aCt | 2 | 2 | B.1.555 | 0.044444 |
ORF1ab/nsp3 | 1080 | N1080G | AAt | GGt | 2 | 2 | B.1.617.2 | 0.000008 |
ORF1ab/nsp3 | 1080 | N1080I | aAt | aTt | 2 | 2 | B.1.617.2 | 0.000008 |
ORF1ab/nsp3 | 1080 | N1080del | AAT | --- | 2 | 2 | C.37 | 0.000232 |
ORF1ab/nsp3 | 1080 | N1080del | AAT | --- | 2 | 2 | P.1 | 0.000032 |
ORF1ab/nsp3 | 1080 | N1080N | aaT | aaC | 2 | 2 | P.1 | 0.000032 |
ORF1ab/nsp3 | 1080 | N1080K | aaT | aaG | 1 | 2 | P.1 | 0.000016 |
ORF1ab/nsp3 | 1080 | N1080K | aaT | aaA | 1 | 2 | P.1 | 0.000016 |
ORF1ab/nsp3 | 1080 | N1080S | aAt | aGt | 2 | 2 | P.2 | 0.000373 |
ORF1ab/nsp3 | 1080 | N1080N | aaT | aaC | 1 | 1 | A.2.4 | 0.003367 |
ORF1ab/nsp3 | 1080 | N1080del | AAT | --- | 1 | 1 | AD.2 | 0.000219 |
ORF1ab/nsp3 | 1080 | N1080C | AAT | TGC | 1 | 1 | All | 0 |
ORF1ab/nsp3 | 1080 | N1080Q | AaT | CaA | 1 | 1 | All | 0 |
ORF1ab/nsp3 | 1080 | N1080T | aAt | aCt | 1 | 1 | AY.100 | 0.000046 |
ORF1ab/nsp3 | 1080 | N1080D | Aat | Gat | 1 | 1 | AY.102 | 0.000027 |
ORF1ab/nsp3 | 1080 | N1080del | AAT | --- | 1 | 1 | AY.102 | 0.000027 |
ORF1ab/nsp3 | 1080 | N1080S | aAt | aGt | 1 | 1 | AY.103 | 0.000006 |
ORF1ab/nsp3 | 1080 | N1080del | AAT | --- | 1 | 1 | AY.103 | 0.000006 |
ORF1ab/nsp3 | 1080 | N1080T | aAt | aCt | 1 | 1 | AY.103 | 0.000006 |
ORF1ab/nsp3 | 1080 | N1080S | aAt | aGt | 1 | 1 | AY.109 | 0.00074 |
ORF1ab/nsp3 | 1080 | N1080N | aaT | aaC | 1 | 1 | AY.110 | 0.000113 |
ORF1ab/nsp3 | 1080 | N1080S | aAt | aGt | 1 | 1 | AY.113 | 0.000142 |
ORF1ab/nsp3 | 1080 | N1080del | AAT | --- | 1 | 1 | AY.113 | 0.000142 |
ORF1ab/nsp3 | 1080 | N1080S | aAt | aGt | 1 | 1 | AY.114 | 0.000231 |
ORF1ab/nsp3 | 1080 | N1080S | aAt | aGt | 1 | 1 | AY.120.1 | 0.000321 |
ORF1ab/nsp3 | 1080 | N1080M | aAT | aTG | 1 | 1 | AY.120.2 | 0.001285 |
ORF1ab/nsp3 | 1080 | N1080T | aAt | aCt | 1 | 1 | AY.20 | 0.000039 |
ORF1ab/nsp3 | 1080 | N1080K | aaT | aaG | 1 | 1 | AY.25 | 0.000006 |
ORF1ab/nsp3 | 1080 | N1080S | aAt | aGt | 1 | 1 | AY.25 | 0.000006 |
ORF1ab/nsp3 | 1080 | N1080del1 | Aat | -at | 1 | 1 | AY.26 | 0.000028 |
ORF1ab/nsp3 | 1080 | N1080S | aAt | aGt | 1 | 1 | AY.27 | 0.000065 |
ORF1ab/nsp3 | 1080 | N1080del | AAT | --- | 1 | 1 | AY.29 | 0.000016 |
ORF1ab/nsp3 | 1080 | N1080D | Aat | Gat | 1 | 1 | AY.29 | 0.000016 |
ORF1ab/nsp3 | 1080 | N1080D | Aat | Gat | 1 | 1 | AY.3 | 0.00001 |
ORF1ab/nsp3 | 1080 | N1080del | AAT | --- | 1 | 1 | AY.3 | 0.00001 |
ORF1ab/nsp3 | 1080 | N1080S | aAt | aGt | 1 | 1 | AY.3 | 0.00001 |
ORF1ab/nsp3 | 1080 | N1080D | Aat | Gat | 1 | 1 | AY.3.1 | 0.000085 |
ORF1ab/nsp3 | 1080 | N1080S | aAt | aGt | 1 | 1 | AY.36 | 0.000148 |
ORF1ab/nsp3 | 1080 | N1080del | AAT | --- | 1 | 1 | AY.36 | 0.000148 |
ORF1ab/nsp3 | 1080 | N1080S | aAt | aGt | 1 | 1 | AY.39 | 0.000025 |
ORF1ab/nsp3 | 1080 | N1080del2 | aAT | a-- | 1 | 1 | AY.39 | 0.000025 |
ORF1ab/nsp3 | 1080 | N1080D | Aat | Gat | 1 | 1 | AY.39.1 | 0.00004 |
ORF1ab/nsp3 | 1080 | N1080K | aaT | aaG | 1 | 1 | AY.4 | 0.000002 |
ORF1ab/nsp3 | 1080 | N1080del | AAT | --- | 1 | 1 | AY.4.3 | 0.000842 |
ORF1ab/nsp3 | 1080 | N1080N | aaT | aaC | 1 | 1 | AY.4.5 | 0.000107 |
ORF1ab/nsp3 | 1080 | N1080T | aAt | aCt | 1 | 1 | AY.43 | 0.000004 |
ORF1ab/nsp3 | 1080 | N1080H | Aat | Cat | 1 | 1 | AY.43 | 0.000004 |
ORF1ab/nsp3 | 1080 | N1080del | AAT | --- | 1 | 1 | AY.44 | 0.000006 |
ORF1ab/nsp3 | 1080 | N1080H | Aat | Cat | 1 | 1 | AY.44 | 0.000006 |
ORF1ab/nsp3 | 1080 | N1080del2 | aAT | a-- | 1 | 1 | AY.44 | 0.000006 |
ORF1ab/nsp3 | 1080 | N1080Y | Aat | Tat | 1 | 1 | AY.44 | 0.000006 |
ORF1ab/nsp3 | 1080 | N1080T | aAt | aCt | 1 | 1 | AY.44 | 0.000006 |
ORF1ab/nsp3 | 1080 | N1080K | aaT | aaG | 1 | 1 | AY.46 | 0.000104 |
ORF1ab/nsp3 | 1080 | N1080T | aAt | aCt | 1 | 1 | AY.46 | 0.000104 |
ORF1ab/nsp3 | 1080 | N1080Y | Aat | Tat | 1 | 1 | AY.46.4 | 0.000165 |
ORF1ab/nsp3 | 1080 | N1080T | aAt | aCt | 1 | 1 | AY.46.6 | 0.000072 |
ORF1ab/nsp3 | 1080 | N1080del | AAT | --- | 1 | 1 | AY.46.6 | 0.000072 |
ORF1ab/nsp3 | 1080 | N1080del | AAT | --- | 1 | 1 | AY.5.3 | 0.000337 |
ORF1ab/nsp3 | 1080 | N1080del | AAT | --- | 1 | 1 | AY.54 | 0.000095 |
ORF1ab/nsp3 | 1080 | N1080del | AAT | --- | 1 | 1 | AY.61 | 0.000105 |
ORF1ab/nsp3 | 1080 | N1080del | AAT | --- | 1 | 1 | AY.65 | 0.000533 |
ORF1ab/nsp3 | 1080 | N1080del | AAT | --- | 1 | 1 | AY.66 | 0.00107 |
ORF1ab/nsp3 | 1080 | N1080M | aAT | aTG | 1 | 1 | AY.75 | 0.000056 |
ORF1ab/nsp3 | 1080 | N1080S | aAt | aGt | 1 | 1 | AY.75 | 0.000056 |
ORF1ab/nsp3 | 1080 | N1080del1 | AAT | -TW | 1 | 1 | AY.84 | 0.000437 |
ORF1ab/nsp3 | 1080 | N1080S | aAt | aGt | 1 | 1 | AY.85 | 0.000427 |
ORF1ab/nsp3 | 1080 | N1080K | aaT | aaA | 1 | 1 | AY.85 | 0.000427 |
ORF1ab/nsp3 | 1080 | N1080del | AAT | --- | 1 | 1 | AY.85 | 0.000427 |
ORF1ab/nsp3 | 1080 | N1080Y | Aat | Tat | 1 | 1 | AY.9.2 | 0.000037 |
ORF1ab/nsp3 | 1080 | N1080S | AAt | TCt | 1 | 1 | AY.9.2 | 0.000037 |
ORF1ab/nsp3 | 1080 | N1080S | aAt | aGt | 1 | 1 | AY.98 | 0.000079 |
ORF1ab/nsp3 | 1080 | N1080del | AAT | --- | 1 | 1 | AY.98.1 | 0.000048 |
ORF1ab/nsp3 | 1080 | N1080H | Aat | Cat | 1 | 1 | AY.98.1 | 0.000048 |
ORF1ab/nsp3 | 1080 | N1080del | AAT | --- | 1 | 1 | AY.99 | 0.001049 |
ORF1ab/nsp3 | 1080 | N1080del | AAT | --- | 1 | 1 | AZ.2 | 0.000821 |
ORF1ab/nsp3 | 1080 | N1080N | aaT | aaC | 1 | 1 | B.1 | 0.000009 |
ORF1ab/nsp3 | 1080 | N1080H | Aat | Cat | 1 | 1 | B.1.1 | 0.000018 |
ORF1ab/nsp3 | 1080 | N1080del2 | aAT | a-- | 1 | 1 | B.1.1 | 0.000018 |
ORF1ab/nsp3 | 1080 | N1080S | aAt | aGt | 1 | 1 | B.1.1.141 | 0.002012 |
ORF1ab/nsp3 | 1080 | N1080S | aAt | aGt | 1 | 1 | B.1.1.200 | 0.007463 |
ORF1ab/nsp3 | 1080 | N1080del | AAT | --- | 1 | 1 | B.1.1.207 | 0.001182 |
ORF1ab/nsp3 | 1080 | N1080del | AAT | --- | 1 | 1 | B.1.1.318 | 0.000302 |
ORF1ab/nsp3 | 1080 | N1080I | aAt | aTt | 1 | 1 | B.1.1.371 | 0.010417 |
ORF1ab/nsp3 | 1080 | N1080K | aaT | aaG | 1 | 1 | B.1.1.39 | 0.00051 |
ORF1ab/nsp3 | 1080 | N1080del | AAT | --- | 1 | 1 | B.1.1.409 | 0.002833 |
ORF1ab/nsp3 | 1080 | N1080S | aAt | aGt | 1 | 1 | B.1.1.434 | 0.000349 |
ORF1ab/nsp3 | 1080 | N1080Y | Aat | Tat | 1 | 1 | B.1.1.434 | 0.000349 |
ORF1ab/nsp3 | 1080 | N1080T | aAt | aCt | 1 | 1 | B.1.1.519 | 0.00004 |
ORF1ab/nsp3 | 1080 | N1080A | AAt | GCt | 1 | 1 | B.1.1.7 | 0.000001 |
ORF1ab/nsp3 | 1080 | N1080K | aaT | aaG | 1 | 1 | B.1.1.70 | 0.000341 |
ORF1ab/nsp3 | 1080 | N1080S | aAt | aGt | 1 | 1 | B.1.1.74 | 0.00431 |
ORF1ab/nsp3 | 1080 | N1080S | aAt | aGt | 1 | 1 | B.1.157 | 0.002985 |
ORF1ab/nsp3 | 1080 | N1080Y | Aat | Tat | 1 | 1 | B.1.160 | 0.000031 |
ORF1ab/nsp3 | 1080 | N1080K | aaT | aaG | 1 | 1 | B.1.160.29 | 0.004219 |
ORF1ab/nsp3 | 1080 | N1080N | aaT | aaC | 1 | 1 | B.1.177 | 0.000013 |
ORF1ab/nsp3 | 1080 | N1080del | AAT | --- | 1 | 1 | B.1.177.32 | 0.00135 |
ORF1ab/nsp3 | 1080 | N1080K | aaT | aaG | 1 | 1 | B.1.177.44 | 0.000519 |
ORF1ab/nsp3 | 1080 | N1080K | aaT | aaG | 1 | 1 | B.1.177.52 | 0.001757 |
ORF1ab/nsp3 | 1080 | N1080K | aaT | aaG | 1 | 1 | B.1.177.55 | 0.002331 |
ORF1ab/nsp3 | 1080 | N1080K | aaT | aaG | 1 | 1 | B.1.177.83 | 0.001481 |
ORF1ab/nsp3 | 1080 | N1080Y | Aat | Tat | 1 | 1 | B.1.2 | 0.000009 |
ORF1ab/nsp3 | 1080 | N1080D | Aat | Gat | 1 | 1 | B.1.243 | 0.00007 |
ORF1ab/nsp3 | 1080 | N1080K | aaT | aaG | 1 | 1 | B.1.258 | 0.000067 |
ORF1ab/nsp3 | 1080 | N1080del | AAT | --- | 1 | 1 | B.1.258 | 0.000067 |
ORF1ab/nsp3 | 1080 | N1080K | aaT | aaG | 1 | 1 | B.1.258.17 | 0.000104 |
ORF1ab/nsp3 | 1080 | N1080Y | Aat | Tat | 1 | 1 | B.1.265 | 0.001271 |
ORF1ab/nsp3 | 1080 | N1080S | aAt | aGt | 1 | 1 | B.1.351 | 0.00003 |
ORF1ab/nsp3 | 1080 | N1080K | aaT | aaG | 1 | 1 | B.1.351 | 0.00003 |
ORF1ab/nsp3 | 1080 | N1080del | AAT | --- | 1 | 1 | B.1.351 | 0.00003 |
ORF1ab/nsp3 | 1080 | N1080I | aAt | aTt | 1 | 1 | B.1.351 | 0.00003 |
ORF1ab/nsp3 | 1080 | N1080H | Aat | Cat | 1 | 1 | B.1.351 | 0.00003 |
ORF1ab/nsp3 | 1080 | N1080D | Aat | Gat | 1 | 1 | B.1.351.2 | 0.000303 |
ORF1ab/nsp3 | 1080 | N1080S | aAt | aGt | 1 | 1 | B.1.351.2 | 0.000303 |
ORF1ab/nsp3 | 1080 | N1080S | aAt | aGt | 1 | 1 | B.1.36 | 0.000146 |
ORF1ab/nsp3 | 1080 | N1080N | aaT | aaC | 1 | 1 | B.1.396 | 0.000706 |
ORF1ab/nsp3 | 1080 | N1080del | AAT | --- | 1 | 1 | B.1.409 | 0.000781 |
ORF1ab/nsp3 | 1080 | N1080del | AAT | --- | 1 | 1 | B.1.416.1 | 0.001563 |
ORF1ab/nsp3 | 1080 | N1080K | aaT | aaG | 1 | 1 | B.1.427 | 0.00005 |
ORF1ab/nsp3 | 1080 | N1080D | Aat | Gat | 1 | 1 | B.1.427 | 0.00005 |
ORF1ab/nsp3 | 1080 | N1080S | aAt | aGt | 1 | 1 | B.1.497 | 0.000315 |
ORF1ab/nsp3 | 1080 | N1080D | Aat | Gat | 1 | 1 | B.1.525 | 0.000113 |
ORF1ab/nsp3 | 1080 | N1080N | aaT | aaC | 1 | 1 | B.1.525 | 0.000113 |
ORF1ab/nsp3 | 1080 | N1080del | AAT | --- | 1 | 1 | B.1.526 | 0.000024 |
ORF1ab/nsp3 | 1080 | N1080N | aaT | aaC | 1 | 1 | B.1.564 | 0.000426 |
ORF1ab/nsp3 | 1080 | N1080I | aAt | aTt | 1 | 1 | B.1.595 | 0.000261 |
ORF1ab/nsp3 | 1080 | N1080I | aAt | aTt | 1 | 1 | B.1.596 | 0.000087 |
ORF1ab/nsp3 | 1080 | N1080K | aaT | aaG | 1 | 1 | B.1.596 | 0.000087 |
ORF1ab/nsp3 | 1080 | N1080H | Aat | Cat | 1 | 1 | B.1.596 | 0.000087 |
ORF1ab/nsp3 | 1080 | N1080A | AAt | GCt | 1 | 1 | B.1.596 | 0.000087 |
ORF1ab/nsp3 | 1080 | N1080H | Aat | Cat | 1 | 1 | B.1.597 | 0.00463 |
ORF1ab/nsp3 | 1080 | N1080I | aAt | aTt | 1 | 1 | B.1.612 | 0.002653 |
ORF1ab/nsp3 | 1080 | N1080del1 | aaT | aa- | 1 | 1 | B.1.617.2 | 0.000004 |
ORF1ab/nsp3 | 1080 | N1080C | AAT | TGC | 1 | 1 | B.1.617.2 | 0.000004 |
ORF1ab/nsp3 | 1080 | N1080K | aaT | aaG | 1 | 1 | B.1.621 | 0.000089 |
ORF1ab/nsp3 | 1080 | N1080del | AAT | --- | 1 | 1 | B.15 | 0.017544 |
ORF1ab/nsp3 | 1080 | N1080S | aAt | aGt | 1 | 1 | C.14 | 0.004329 |
ORF1ab/nsp3 | 1080 | N1080del | AAT | --- | 1 | 1 | C.36 | 0.000911 |
ORF1ab/nsp3 | 1080 | N1080K | aaT | aaA | 1 | 1 | C.6 | 0.037037 |
ORF1ab/nsp3 | 1080 | N1080Q | AaT | CaA | 1 | 1 | C.6 | 0.037037 |
ORF1ab/nsp3 | 1080 | N1080H | Aat | Cat | 1 | 1 | C.6 | 0.037037 |
ORF1ab/nsp3 | 1080 | N1080N | aaT | aaC | 1 | 1 | D.2 | 0.000075 |
ORF1ab/nsp3 | 1080 | N1080Y | Aat | Tat | 1 | 1 | D.2 | 0.000075 |
ORF1ab/nsp3 | 1080 | N1080S | aAt | aGt | 1 | 1 | P.1 | 0.000016 |
ORF1ab/nsp3 | 1080 | N1080T | aAt | aCt | 1 | 1 | P.1 | 0.000016 |
ORF1ab/nsp3 | 1080 | N1080R | aAT | aGA | 1 | 1 | P.1 | 0.000016 |
ORF1ab/nsp3 | 1080 | N1080del | AAT | --- | 1 | 1 | P.1.1 | 0.000318 |
ORF1ab/nsp3 | 1080 | N1080N | aaT | aaC | 1 | 1 | P.1.10 | 0.000269 |
ORF1ab/nsp3 | 1080 | N1080Y | Aat | Tat | 1 | 1 | P.1.12 | 0.000484 |
ORF1ab/nsp3 | 1080 | N1080K | aaT | aaA | 1 | 1 | P.2 | 0.000187 |
ORF1ab/nsp3 | 1080 | N1080R | aAT | aGA | 1 | 1 | P.2 | 0.000187 |
ORF1ab/nsp3 | 1080 | N1080I | aAt | aTt | 1 | 1 | P.2 | 0.000187 |
ORF1ab/nsp3 | 1080 | N1080K | aaT | aaG | 1 | 1 | P.6 | 0.003145 |
ORF1ab/nsp3 | 1080 | N1080del | AAT | --- | 1 | 1 | Q.2 | 0.000613 |
CoV-GLUE is still in development. CoV-GLUE was originally developed as part of COG-UK by Josh Singer using the GLUE framework at the MRC-University of Glasgow Centre for Virus Research (CVR). In 2021 it was redeveloped by Richard Orton to scale to the millions of genome sequences available. We acknowledge support from the MRC (MC_UU_12014/12), WT (220977/Z/20/Z) and UKRI G2P (MR/W005611/1). Please contact Richard Orton with any queries: Richard.Orton@glasgow.ac.uk
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