CoV-GLUEGenomeCountriesLineagesMutationsInsertionsDeletionsUpdated:

CoV-GLUE | Mutations | Mutation

CoV-GLUE Mutation: ORF = ORF1ab/nsp3 : CodonNum = 108 & Codon = Tct

Details of the codons used for the mutation across all lineages (CodonProp is the proportion each codon is used for this AA mutation):

ORFCodonNumMutORF1abMutMutTypeRefCodonMutCodonAACountCodonCountCodonPropGenome Position
ORF1ab/nsp3108P108SP926SnonsynCctTct1058105813041-3043

Details of the mutation no within lineages (LineageCodonProp is the proportion the codon is observed at, at this particular site, on each lineage):

ORFCodonNumMutRefCodonMutCodonCodonCountAACountLineageLineageCodonProp
ORF1ab/nsp3108P108SCctTct10581058All0.000202
ORF1ab/nsp3108P108SCctTct421421AY.1200.015652
ORF1ab/nsp3108P108SCctTct111111B.1.1.70.000099
ORF1ab/nsp3108P108SCctTct7575AY.40.000117
ORF1ab/nsp3108P108SCctTct7373B.1.1770.000961
ORF1ab/nsp3108P108SCctTct3737B.1.20.000326
ORF1ab/nsp3108P108SCctTct3030AY.250.00018
ORF1ab/nsp3108P108SCctTct2525P.10.000394
ORF1ab/nsp3108P108SCctTct1717AY.1030.000106
ORF1ab/nsp3108P108SCctTct1515B.1.362.11
ORF1ab/nsp3108P108SCctTct1515B.1.617.20.000056
ORF1ab/nsp3108P108SCctTct1212AY.430.000053
ORF1ab/nsp3108P108SCctTct1212AY.590.006356
ORF1ab/nsp3108P108SCctTct1212B.1.1.2840.001289
ORF1ab/nsp3108P108SCctTct1212P.1.170.001941
ORF1ab/nsp3108P108SCctTct1010C.370.001161
ORF1ab/nsp3108P108SCctTct88AY.130.001288
ORF1ab/nsp3108P108SCctTct88AY.440.000049
ORF1ab/nsp3108P108SCctTct88B.1.5260.000188
ORF1ab/nsp3108P108SCctTct77B.10.000064
ORF1ab/nsp3108P108SCctTct77B.1.1.280.002179
ORF1ab/nsp3108P108SCctTct66AY.330.000401
ORF1ab/nsp3108P108SCctTct55A.2.50.002495
ORF1ab/nsp3108P108SCctTct55AY.1020.000133
ORF1ab/nsp3108P108SCctTct55AY.260.000142
ORF1ab/nsp3108P108SCctTct55AY.290.000079
ORF1ab/nsp3108P108SCctTct55AY.30.00005
ORF1ab/nsp3108P108SCctTct55AY.390.000124
ORF1ab/nsp3108P108SCctTct55AY.4.20.000108
ORF1ab/nsp3108P108SCctTct55B.1.6210.000443
ORF1ab/nsp3108P108SCctTct44B.1.1.2690.005413
ORF1ab/nsp3108P108SCctTct44B.1.1.5190.000159
ORF1ab/nsp3108P108SCctTct44B.1.3620.006163
ORF1ab/nsp3108P108SCctTct44P.20.000747
ORF1ab/nsp3108P108SCctTct33AY.750.000168
ORF1ab/nsp3108P108SCctTct33B.1.10.000054
ORF1ab/nsp3108P108SCctTct33B.1.1.1600.071429
ORF1ab/nsp3108P108SCctTct33B.1.1420.008696
ORF1ab/nsp3108P108SCctTct33B.1.2580.0002
ORF1ab/nsp3108P108SCctTct33P.1.150.000697
ORF1ab/nsp3108P108SCctTct22AY.1190.000071
ORF1ab/nsp3108P108SCctTct22AY.120.20.002571
ORF1ab/nsp3108P108SCctTct22AY.200.000078
ORF1ab/nsp3108P108SCctTct22AY.3.10.000171
ORF1ab/nsp3108P108SCctTct22AY.640.00119
ORF1ab/nsp3108P108SCctTct22AY.700.000417
ORF1ab/nsp3108P108SCctTct22B.1.110.30.001437
ORF1ab/nsp3108P108SCctTct22B.1.2430.000139
ORF1ab/nsp3108P108SCctTct22B.1.4990.002101
ORF1ab/nsp3108P108SCctTct22B.1.5960.000174
ORF1ab/nsp3108P108SCctTct11A.2.20.001689
ORF1ab/nsp3108P108SCctTct11AD.20.000219
ORF1ab/nsp3108P108SCctTct11AY.1000.000046
ORF1ab/nsp3108P108SCctTct11AY.1100.000113
ORF1ab/nsp3108P108SCctTct11AY.1130.000142
ORF1ab/nsp3108P108SCctTct11AY.1170.000085
ORF1ab/nsp3108P108SCctTct11AY.16.10.00047
ORF1ab/nsp3108P108SCctTct11AY.240.000431
ORF1ab/nsp3108P108SCctTct11AY.360.000148
ORF1ab/nsp3108P108SCctTct11AY.450.000122
ORF1ab/nsp3108P108SCctTct11AY.460.000104
ORF1ab/nsp3108P108SCctTct11AY.46.20.000635
ORF1ab/nsp3108P108SCctTct11AY.470.000031
ORF1ab/nsp3108P108SCctTct11AY.50.000021
ORF1ab/nsp3108P108SCctTct11AY.680.000274
ORF1ab/nsp3108P108SCctTct11AY.70.000196
ORF1ab/nsp3108P108SCctTct11AY.770.001127
ORF1ab/nsp3108P108SCctTct11AY.9.20.000037
ORF1ab/nsp3108P108SCctTct11AY.930.000273
ORF1ab/nsp3108P108SCctTct11AY.980.000079
ORF1ab/nsp3108P108SCctTct11B.1.1.100.001115
ORF1ab/nsp3108P108SCctTct11B.1.1.2160.00089
ORF1ab/nsp3108P108SCctTct11B.1.1.2220.000204
ORF1ab/nsp3108P108SCctTct11B.1.1.3110.000358
ORF1ab/nsp3108P108SCctTct11B.1.1.3720.000689
ORF1ab/nsp3108P108SCctTct11B.1.1110.001175
ORF1ab/nsp3108P108SCctTct11B.1.177.40.000211
ORF1ab/nsp3108P108SCctTct11B.1.177.650.000665
ORF1ab/nsp3108P108SCctTct11B.1.177.730.000566
ORF1ab/nsp3108P108SCctTct11B.1.2340.000132
ORF1ab/nsp3108P108SCctTct11B.1.3460.001311
ORF1ab/nsp3108P108SCctTct11B.1.3510.00003
ORF1ab/nsp3108P108SCctTct11B.1.3610.001289
ORF1ab/nsp3108P108SCctTct11B.1.4270.00005
ORF1ab/nsp3108P108SCctTct11B.1.438.10.000107
ORF1ab/nsp3108P108SCctTct11B.1.4690.00361
ORF1ab/nsp3108P108SCctTct11B.1.5250.000113
ORF1ab/nsp3108P108SCctTct11B.1.5820.000491
ORF1ab/nsp3108P108SCctTct11B.1.5950.000261
ORF1ab/nsp3108P108SCctTct11B.470.020408
ORF1ab/nsp3108P108SCctTct11C.37.10.002618
ORF1ab/nsp3108P108SCctTct11P.1.160.000374
ORF1ab/nsp3108P108SCctTct11Q.80.000165

CoV-GLUE is still in development. CoV-GLUE was originally developed as part of COG-UK by Josh Singer using the GLUE framework at the MRC-University of Glasgow Centre for Virus Research (CVR). In 2021 it was redeveloped by Richard Orton to scale to the millions of genome sequences available. We acknowledge support from the MRC (MC_UU_12014/12), WT (220977/Z/20/Z) and UKRI G2P (MR/W005611/1). Please contact Richard Orton with any queries: Richard.Orton@glasgow.ac.uk

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