CoV-GLUEGenomeCountriesLineagesMutationsInsertionsDeletionsUpdated:

CoV-GLUE | Mutations | Mutation

CoV-GLUE Mutation: ORF = ORF1ab/nsp3 : CodonNum = 108

Details of the codons used for the mutation across all lineages (CodonProp is the proportion each codon is used for this AA mutation):

ORFCodonNumMutORF1abMutMutTypeRefCodonMutCodonAACountCodonCountCodonPropGenome Position
ORF1ab/nsp3108P108SP926SnonsynCctTct1058105813041-3043
ORF1ab/nsp3108P108LP926LnonsyncCtcTt6146100.9934853041-3043
ORF1ab/nsp3108P108LP926LnonsyncCTcTC61440.006514663041-3043
ORF1ab/nsp3108P108PP926PsynccTccC4563480.7631583041-3043
ORF1ab/nsp3108P108PP926PsynccTccG456690.1513163041-3043
ORF1ab/nsp3108P108PP926PsynccTccA456390.08552633041-3043
ORF1ab/nsp3108P108HP926HnonsyncCtcAt3443400.9883723041-3043
ORF1ab/nsp3108P108HP926HnonsyncCTcAC34440.01162793041-3043
ORF1ab/nsp3108P108TP926TnonsynCctAct1631620.9938653041-3043
ORF1ab/nsp3108P108TP926TnonsynCcTAcC16310.006134973041-3043
ORF1ab/nsp3108P108AP926AnonsynCctGct464613041-3043
ORF1ab/nsp3108P108delP926deldelCCT---414113041-3043
ORF1ab/nsp3108P108RP926RnonsyncCtcGt3313041-3043
ORF1ab/nsp3108P108FP926FnonsynCCTTTC3313041-3043
ORF1ab/nsp3108P108YP926YnonsynCCTTAC1113041-3043
ORF1ab/nsp3108P108del1P926del1delccTcc-1113041-3043

Details of the mutation no within lineages (LineageCodonProp is the proportion the codon is observed at, at this particular site, on each lineage):

ORFCodonNumMutRefCodonMutCodonCodonCountAACountLineageLineageCodonProp
ORF1ab/nsp3108P108SCctTct10581058All0.000202
ORF1ab/nsp3108P108LcCtcTt610614All0.000117
ORF1ab/nsp3108P108LcCTcTC4614All0.000001
ORF1ab/nsp3108P108PccTccC348456All0.000067
ORF1ab/nsp3108P108PccTccG69456All0.000013
ORF1ab/nsp3108P108PccTccA39456All0.000007
ORF1ab/nsp3108P108SCctTct421421AY.1200.015652
ORF1ab/nsp3108P108HcCtcAt340344All0.000065
ORF1ab/nsp3108P108HcCTcAC4344All0.000001
ORF1ab/nsp3108P108TCctAct162163All0.000031
ORF1ab/nsp3108P108TCcTAcC1163All0
ORF1ab/nsp3108P108LcCtcTt124124B.1.3360.302439
ORF1ab/nsp3108P108SCctTct111111B.1.1.70.000099
ORF1ab/nsp3108P108LcCtcTt108108AY.46.60.007798
ORF1ab/nsp3108P108LcCtcTt8686B.1.1.70.000077
ORF1ab/nsp3108P108PccTccG3281B.1.1.70.000029
ORF1ab/nsp3108P108PccTccC3181B.1.1.70.000028
ORF1ab/nsp3108P108PccTccA1881B.1.1.70.000016
ORF1ab/nsp3108P108SCctTct7575AY.40.000117
ORF1ab/nsp3108P108SCctTct7373B.1.1770.000961
ORF1ab/nsp3108P108PccTccC6565AY.40.000101
ORF1ab/nsp3108P108HcCtcAt6464AY.40.0001
ORF1ab/nsp3108P108PccTccC6263AY.1030.000385
ORF1ab/nsp3108P108PccTccG163AY.1030.000006
ORF1ab/nsp3108P108TCctAct5252AY.440.000317
ORF1ab/nsp3108P108ACctGct4646All0.000009
ORF1ab/nsp3108P108HcCtcAt4343B.1.177.810.008141
ORF1ab/nsp3108P108delCCT---4141All0.000008
ORF1ab/nsp3108P108HcCtcAt3939AY.750.002185
ORF1ab/nsp3108P108PccTccC3839D.20.002852
ORF1ab/nsp3108P108PccTccA139D.20.000075
ORF1ab/nsp3108P108ACctGct3838AY.40.000059
ORF1ab/nsp3108P108SCctTct3737B.1.20.000326
ORF1ab/nsp3108P108LcCtcTt3434AY.1030.000211
ORF1ab/nsp3108P108HcCtcAt3232B.1.1.70.000029
ORF1ab/nsp3108P108SCctTct3030AY.250.00018
ORF1ab/nsp3108P108SCctTct2525P.10.000394
ORF1ab/nsp3108P108HcCtcAt2324B.1.617.20.000087
ORF1ab/nsp3108P108HcCTcAC124B.1.617.20.000004
ORF1ab/nsp3108P108PccTccC2023B.1.617.20.000075
ORF1ab/nsp3108P108PccTccG323B.1.617.20.000011
ORF1ab/nsp3108P108TCctAct2121AY.1200.000781
ORF1ab/nsp3108P108LcCtcTt2121AY.40.000033
ORF1ab/nsp3108P108LcCtcTt2121B.1.617.20.000079
ORF1ab/nsp3108P108TCctAct1919AY.40.00003
ORF1ab/nsp3108P108SCctTct1717AY.1030.000106
ORF1ab/nsp3108P108PccTccA1117AY.390.000272
ORF1ab/nsp3108P108PccTccC517AY.390.000124
ORF1ab/nsp3108P108PccTccG117AY.390.000025
ORF1ab/nsp3108P108LcCtcTt1616AY.440.000097
ORF1ab/nsp3108P108PccTccC1116P.10.000173
ORF1ab/nsp3108P108PccTccG516P.10.000079
ORF1ab/nsp3108P108PccTccC1515AY.800.01693
ORF1ab/nsp3108P108SCctTct1515B.1.362.11
ORF1ab/nsp3108P108SCctTct1515B.1.617.20.000056
ORF1ab/nsp3108P108HcCtcAt1414AY.470.000435
ORF1ab/nsp3108P108LcCtcTt1414B.1.2340.001847
ORF1ab/nsp3108P108LcCtcTt1414B.1.6350.245614
ORF1ab/nsp3108P108HcCtcAt1213AY.440.000073
ORF1ab/nsp3108P108HcCTcAC113AY.440.000006
ORF1ab/nsp3108P108LcCtcTt1313B.1.2580.000865
ORF1ab/nsp3108P108SCctTct1212AY.430.000053
ORF1ab/nsp3108P108PccTccC1112AY.470.000342
ORF1ab/nsp3108P108PccTccG112AY.470.000031
ORF1ab/nsp3108P108SCctTct1212AY.590.006356
ORF1ab/nsp3108P108LcCtcTt1212AY.910.008766
ORF1ab/nsp3108P108LcCtcTt1212B.1.10.000218
ORF1ab/nsp3108P108SCctTct1212B.1.1.2840.001289
ORF1ab/nsp3108P108SCctTct1212P.1.170.001941
ORF1ab/nsp3108P108HcCtcAt1011AY.430.000044
ORF1ab/nsp3108P108HcCTcAC111AY.430.000004
ORF1ab/nsp3108P108PccTccC910AY.440.000055
ORF1ab/nsp3108P108PccTccA110AY.440.000006
ORF1ab/nsp3108P108LcCtcTt1010B.10.000092
ORF1ab/nsp3108P108SCctTct1010C.370.001161
ORF1ab/nsp3108P108LcCtcTt89AY.430.000035
ORF1ab/nsp3108P108LcCTcTC19AY.430.000004
ORF1ab/nsp3108P108PccTccC79B.1.20.000062
ORF1ab/nsp3108P108PccTccA29B.1.20.000018
ORF1ab/nsp3108P108HcCtcAt99B.1.2400.00194
ORF1ab/nsp3108P108SCctTct88AY.130.001288
ORF1ab/nsp3108P108PccTccC88AY.39.20.012327
ORF1ab/nsp3108P108SCctTct88AY.440.000049
ORF1ab/nsp3108P108LcCtcTt88B.1.1770.000105
ORF1ab/nsp3108P108TCctAct88B.1.177.860.001468
ORF1ab/nsp3108P108SCctTct88B.1.5260.000188
ORF1ab/nsp3108P108PccTccC67AY.1020.000159
ORF1ab/nsp3108P108PccTccG17AY.1020.000027
ORF1ab/nsp3108P108HcCtcAt77B.10.000064
ORF1ab/nsp3108P108SCctTct77B.10.000064
ORF1ab/nsp3108P108SCctTct77B.1.1.280.002179
ORF1ab/nsp3108P108LcCtcTt77B.1.4290.000165
ORF1ab/nsp3108P108TCctAct77P.10.00011
ORF1ab/nsp3108P108SCctTct66AY.330.000401
ORF1ab/nsp3108P108PccTccC56B.10.000046
ORF1ab/nsp3108P108PccTccG16B.10.000009
ORF1ab/nsp3108P108LcCtcTt66B.1.1.1580.073171
ORF1ab/nsp3108P108TCctAct66B.1.1.70.000005
ORF1ab/nsp3108P108PccTccC66B.1.1770.000079
ORF1ab/nsp3108P108TCctAct66B.1.20.000053
ORF1ab/nsp3108P108PccTccG66B.1.5950.001566
ORF1ab/nsp3108P108PccTccG66P.20.00112
ORF1ab/nsp3108P108SCctTct55A.2.50.002495
ORF1ab/nsp3108P108SCctTct55AY.1020.000133
ORF1ab/nsp3108P108HcCtcAt55AY.200.000194
ORF1ab/nsp3108P108LcCtcTt55AY.250.00003
ORF1ab/nsp3108P108SCctTct55AY.260.000142
ORF1ab/nsp3108P108SCctTct55AY.290.000079
ORF1ab/nsp3108P108SCctTct55AY.30.00005
ORF1ab/nsp3108P108LcCtcTt45AY.30.00004
ORF1ab/nsp3108P108LcCTcTC15AY.30.00001
ORF1ab/nsp3108P108SCctTct55AY.390.000124
ORF1ab/nsp3108P108SCctTct55AY.4.20.000108
ORF1ab/nsp3108P108delCCT---55B.10.000046
ORF1ab/nsp3108P108HcCtcAt55B.1.10.000091
ORF1ab/nsp3108P108SCctTct55B.1.6210.000443
ORF1ab/nsp3108P108delCCT---440.222222
ORF1ab/nsp3108P108TCctAct44AY.1030.000025
ORF1ab/nsp3108P108HcCtcAt44AY.250.000024
ORF1ab/nsp3108P108HcCtcAt44AY.260.000113
ORF1ab/nsp3108P108PccTccC44AY.290.000063
ORF1ab/nsp3108P108TCctAct44AY.30.00004
ORF1ab/nsp3108P108PccTccA24AY.30.00002
ORF1ab/nsp3108P108PccTccC24AY.30.00002
ORF1ab/nsp3108P108PccTccG34AY.4.50.000322
ORF1ab/nsp3108P108PccTccC14AY.4.50.000107
ORF1ab/nsp3108P108TCctAct44AY.430.000018
ORF1ab/nsp3108P108LcCtcTt44AY.470.000124
ORF1ab/nsp3108P108PccTccC44AY.50.000083
ORF1ab/nsp3108P108PccTccG44AY.530.00115
ORF1ab/nsp3108P108TCctAct44B.1.10.000073
ORF1ab/nsp3108P108PccTccC34B.1.10.000054
ORF1ab/nsp3108P108PccTccG14B.1.10.000018
ORF1ab/nsp3108P108SCctTct44B.1.1.2690.005413
ORF1ab/nsp3108P108LcCtcTt44B.1.1.3170.001647
ORF1ab/nsp3108P108HcCtcAt44B.1.1.460.017467
ORF1ab/nsp3108P108SCctTct44B.1.1.5190.000159
ORF1ab/nsp3108P108PccTccC44B.1.1.5190.000159
ORF1ab/nsp3108P108HcCtcAt44B.1.177.820.001909
ORF1ab/nsp3108P108LcCtcTt44B.1.3110.001098
ORF1ab/nsp3108P108SCctTct44B.1.3620.006163
ORF1ab/nsp3108P108TCctAct44B.1.6210.000354
ORF1ab/nsp3108P108LcCtcTt34D.20.000225
ORF1ab/nsp3108P108LcCTcTC14D.20.000075
ORF1ab/nsp3108P108SCctTct44P.20.000747
ORF1ab/nsp3108P108RcCtcGt33All0.000001
ORF1ab/nsp3108P108FCCTTTC33All0.000001
ORF1ab/nsp3108P108HcCtcAt33AY.1000.000138
ORF1ab/nsp3108P108HcCtcAt33AY.30.00003
ORF1ab/nsp3108P108ACctGct33AY.440.000018
ORF1ab/nsp3108P108SCctTct33AY.750.000168
ORF1ab/nsp3108P108SCctTct33B.1.10.000054
ORF1ab/nsp3108P108SCctTct33B.1.1.1600.071429
ORF1ab/nsp3108P108delCCT---33B.1.1.330.001263
ORF1ab/nsp3108P108delCCT---33B.1.1.70.000003
ORF1ab/nsp3108P108SCctTct33B.1.1420.008696
ORF1ab/nsp3108P108HcCtcAt33B.1.177.180.00348
ORF1ab/nsp3108P108HcCtcAt33B.1.177.350.002073
ORF1ab/nsp3108P108LcCtcTt33B.1.20.000026
ORF1ab/nsp3108P108SCctTct33B.1.2580.0002
ORF1ab/nsp3108P108HcCtcAt33P.10.000047
ORF1ab/nsp3108P108SCctTct33P.1.150.000697
ORF1ab/nsp3108P108FCCTTTC220.111111
ORF1ab/nsp3108P108HcCtcAt22AY.1010.000981
ORF1ab/nsp3108P108HcCtcAt22AY.1030.000012
ORF1ab/nsp3108P108TCctAct22AY.1170.000169
ORF1ab/nsp3108P108SCctTct22AY.1190.000071
ORF1ab/nsp3108P108SCctTct22AY.120.20.002571
ORF1ab/nsp3108P108SCctTct22AY.200.000078
ORF1ab/nsp3108P108PccTccC12AY.250.000006
ORF1ab/nsp3108P108PccTccA12AY.250.000006
ORF1ab/nsp3108P108PccTccC22AY.260.000057
ORF1ab/nsp3108P108LcCtcTt22AY.270.000129
ORF1ab/nsp3108P108SCctTct22AY.3.10.000171
ORF1ab/nsp3108P108HcCtcAt22AY.390.000049
ORF1ab/nsp3108P108LcCtcTt22AY.390.000049
ORF1ab/nsp3108P108LcCtcTt22AY.4.20.000043
ORF1ab/nsp3108P108LcCtcTt22AY.420.00008
ORF1ab/nsp3108P108HcCtcAt22AY.50.000041
ORF1ab/nsp3108P108SCctTct22AY.640.00119
ORF1ab/nsp3108P108SCctTct22AY.700.000417
ORF1ab/nsp3108P108LcCtcTt22AY.750.000112
ORF1ab/nsp3108P108LcCtcTt22AY.98.10.000097
ORF1ab/nsp3108P108TCctAct22B.10.000018
ORF1ab/nsp3108P108delCCT---22B.1.10.000036
ORF1ab/nsp3108P108LcCtcTt22B.1.1.2180.015385
ORF1ab/nsp3108P108LcCtcTt22B.1.1.2700.020619
ORF1ab/nsp3108P108PccTccG22B.1.1.280.000622
ORF1ab/nsp3108P108LcCtcTt22B.1.1.3060.000877
ORF1ab/nsp3108P108TCctAct22B.1.1.340.026316
ORF1ab/nsp3108P108delCCT---22B.1.1.3480.001592
ORF1ab/nsp3108P108TCctAct22B.1.1.5190.000079
ORF1ab/nsp3108P108LcCtcTt22B.1.1.5190.000079
ORF1ab/nsp3108P108ACctGct22B.1.1.70.000002
ORF1ab/nsp3108P108SCctTct22B.1.110.30.001437
ORF1ab/nsp3108P108HcCtcAt22B.1.1770.000026
ORF1ab/nsp3108P108HcCtcAt22B.1.177.500.00939
ORF1ab/nsp3108P108HcCtcAt22B.1.20.000018
ORF1ab/nsp3108P108delCCT---22B.1.20.000018
ORF1ab/nsp3108P108SCctTct22B.1.2430.000139
ORF1ab/nsp3108P108TCctAct22B.1.2580.000133
ORF1ab/nsp3108P108LcCtcTt22B.1.258.170.000208
ORF1ab/nsp3108P108TCctAct22B.1.3110.000549
ORF1ab/nsp3108P108LcCtcTt22B.1.351.30.001753
ORF1ab/nsp3108P108TCctAct22B.1.360.000292
ORF1ab/nsp3108P108LcCtcTt22B.1.36.180.00084
ORF1ab/nsp3108P108PccTccC22B.1.4290.000047
ORF1ab/nsp3108P108LcCtcTt22B.1.438.10.000215
ORF1ab/nsp3108P108SCctTct22B.1.4990.002101
ORF1ab/nsp3108P108PccTccC22B.1.5260.000047
ORF1ab/nsp3108P108SCctTct22B.1.5960.000174
ORF1ab/nsp3108P108LcCtcTt22B.1.5960.000174
ORF1ab/nsp3108P108HcCtcAt22B.1.5970.009259
ORF1ab/nsp3108P108delCCT---22B.1.617.20.000008
ORF1ab/nsp3108P108TCctAct22B.1.617.20.000008
ORF1ab/nsp3108P108HcCtcAt22C.360.001821
ORF1ab/nsp3108P108delCCT---22N.60.014184
ORF1ab/nsp3108P108delCCT---22P.10.000032
ORF1ab/nsp3108P108PccTccC110.055556
ORF1ab/nsp3108P108TCctAct11A0.000387
ORF1ab/nsp3108P108PccTccC11A.10.000282
ORF1ab/nsp3108P108LcCtcTt11A.20.000662
ORF1ab/nsp3108P108SCctTct11A.2.20.001689
ORF1ab/nsp3108P108PccTccA11A.23.10.000704
ORF1ab/nsp3108P108LcCtcTt11A.280.002646
ORF1ab/nsp3108P108SCctTct11AD.20.000219
ORF1ab/nsp3108P108LcCtcTt11AE.10.011364
ORF1ab/nsp3108P108LcCtcTt11AJ.10.045455
ORF1ab/nsp3108P108del1ccTcc-11All0
ORF1ab/nsp3108P108YCCTTAC11All0
ORF1ab/nsp3108P108RcCtcGt11AY.1000.000046
ORF1ab/nsp3108P108SCctTct11AY.1000.000046
ORF1ab/nsp3108P108TCctAct11AY.1010.00049
ORF1ab/nsp3108P108LcCtcTt11AY.1050.000643
ORF1ab/nsp3108P108HcCtcAt11AY.1060.000335
ORF1ab/nsp3108P108SCctTct11AY.1100.000113
ORF1ab/nsp3108P108SCctTct11AY.1130.000142
ORF1ab/nsp3108P108YCCTTAC11AY.1130.000142
ORF1ab/nsp3108P108LcCtcTt11AY.116.10.000311
ORF1ab/nsp3108P108LcCtcTt11AY.1170.000085
ORF1ab/nsp3108P108SCctTct11AY.1170.000085
ORF1ab/nsp3108P108LcCtcTt11AY.130.000161
ORF1ab/nsp3108P108LcCtcTt11AY.140.000088
ORF1ab/nsp3108P108SCctTct11AY.16.10.00047
ORF1ab/nsp3108P108LcCtcTt11AY.16.10.00047
ORF1ab/nsp3108P108PccTccC11AY.190.00114
ORF1ab/nsp3108P108TCcTAcC11AY.20.000356
ORF1ab/nsp3108P108TCctAct11AY.200.000039
ORF1ab/nsp3108P108PccTccA11AY.200.000039
ORF1ab/nsp3108P108LcCtcTt11AY.200.000039
ORF1ab/nsp3108P108SCctTct11AY.240.000431
ORF1ab/nsp3108P108delCCT---11AY.250.000006
ORF1ab/nsp3108P108delCCT---11AY.260.000028
ORF1ab/nsp3108P108ACctGct11AY.260.000028
ORF1ab/nsp3108P108PccTccG11AY.270.000065
ORF1ab/nsp3108P108TCctAct11AY.290.000016
ORF1ab/nsp3108P108FCCTTTC11AY.30.00001
ORF1ab/nsp3108P108delCCT---11AY.300.000396
ORF1ab/nsp3108P108HcCtcAt11AY.340.000097
ORF1ab/nsp3108P108HcCtcAt11AY.34.10.00051
ORF1ab/nsp3108P108LcCtcTt11AY.360.000148
ORF1ab/nsp3108P108SCctTct11AY.360.000148
ORF1ab/nsp3108P108PccTccC11AY.360.000148
ORF1ab/nsp3108P108PccTccC11AY.4.20.000022
ORF1ab/nsp3108P108HcCtcAt11AY.4.20.000022
ORF1ab/nsp3108P108PccTccC11AY.4.40.000409
ORF1ab/nsp3108P108delCCT---11AY.420.00004
ORF1ab/nsp3108P108delCCT---11AY.430.000004
ORF1ab/nsp3108P108HcCtcAt11AY.450.000122
ORF1ab/nsp3108P108SCctTct11AY.450.000122
ORF1ab/nsp3108P108RcCtcGt11AY.460.000104
ORF1ab/nsp3108P108SCctTct11AY.460.000104
ORF1ab/nsp3108P108delCCT---11AY.460.000104
ORF1ab/nsp3108P108SCctTct11AY.46.20.000635
ORF1ab/nsp3108P108SCctTct11AY.470.000031
ORF1ab/nsp3108P108TCctAct11AY.470.000031
ORF1ab/nsp3108P108delCCT---11AY.50.000021
ORF1ab/nsp3108P108SCctTct11AY.50.000021
ORF1ab/nsp3108P108LcCtcTt11AY.60.000041
ORF1ab/nsp3108P108PccTccC11AY.610.000105
ORF1ab/nsp3108P108LcCtcTt11AY.610.000105
ORF1ab/nsp3108P108HcCtcAt11AY.610.000105
ORF1ab/nsp3108P108LcCtcTt11AY.620.000436
ORF1ab/nsp3108P108HcCtcAt11AY.650.000533
ORF1ab/nsp3108P108LcCtcTt11AY.670.000464
ORF1ab/nsp3108P108SCctTct11AY.680.000274
ORF1ab/nsp3108P108LcCtcTt11AY.690.000187
ORF1ab/nsp3108P108PccTccG11AY.70.000196
ORF1ab/nsp3108P108SCctTct11AY.70.000196
ORF1ab/nsp3108P108PccTccC11AY.750.000056
ORF1ab/nsp3108P108SCctTct11AY.770.001127
ORF1ab/nsp3108P108PccTccC11AY.790.001211
ORF1ab/nsp3108P108HcCtcAt11AY.790.001211
ORF1ab/nsp3108P108LcCtcTt11AY.860.00083
ORF1ab/nsp3108P108SCctTct11AY.9.20.000037
ORF1ab/nsp3108P108LcCTcTC11AY.9.20.000037
ORF1ab/nsp3108P108SCctTct11AY.930.000273
ORF1ab/nsp3108P108SCctTct11AY.980.000079
ORF1ab/nsp3108P108LcCtcTt11AY.980.000079
ORF1ab/nsp3108P108LcCtcTt11AY.990.001049
ORF1ab/nsp3108P108HcCTcAC11AY.990.001049
ORF1ab/nsp3108P108LcCtcTt11AY.99.20.000092
ORF1ab/nsp3108P108TCctAct11AY.99.20.000092
ORF1ab/nsp3108P108HcCtcAt11AZ.30.00152
ORF1ab/nsp3108P108HcCtcAt11AZ.50.003509
ORF1ab/nsp3108P108del1ccTcc-11B.1.10.000018
ORF1ab/nsp3108P108LcCtcTt11B.1.1.10.000327
ORF1ab/nsp3108P108SCctTct11B.1.1.100.001115
ORF1ab/nsp3108P108LcCtcTt11B.1.1.1170.009709
ORF1ab/nsp3108P108ACctGct11B.1.1.1530.001095
ORF1ab/nsp3108P108PccTccC11B.1.1.1740.003378
ORF1ab/nsp3108P108HcCtcAt11B.1.1.1760.000439
ORF1ab/nsp3108P108LcCtcTt11B.1.1.2140.000055
ORF1ab/nsp3108P108SCctTct11B.1.1.2160.00089
ORF1ab/nsp3108P108SCctTct11B.1.1.2220.000204
ORF1ab/nsp3108P108LcCtcTt11B.1.1.2630.001558
ORF1ab/nsp3108P108PccTccC11B.1.1.2800.003086
ORF1ab/nsp3108P108LcCtcTt11B.1.1.2840.000107
ORF1ab/nsp3108P108LcCtcTt11B.1.1.2910.000742
ORF1ab/nsp3108P108LcCtcTt11B.1.1.2980.000862
ORF1ab/nsp3108P108SCctTct11B.1.1.3110.000358
ORF1ab/nsp3108P108HcCtcAt11B.1.1.3490.010309
ORF1ab/nsp3108P108delCCT---11B.1.1.3690.000446
ORF1ab/nsp3108P108HcCtcAt11B.1.1.3720.000689
ORF1ab/nsp3108P108SCctTct11B.1.1.3720.000689
ORF1ab/nsp3108P108LcCtcTt11B.1.1.500.000679
ORF1ab/nsp3108P108HcCtcAt11B.1.1.5190.00004
ORF1ab/nsp3108P108HcCtcAt11B.1.1.5260.003546
ORF1ab/nsp3108P108SCctTct11B.1.1110.001175
ORF1ab/nsp3108P108ACctGct11B.1.1470.000756
ORF1ab/nsp3108P108HcCtcAt11B.1.1600.000031
ORF1ab/nsp3108P108delCCT---11B.1.1770.000013
ORF1ab/nsp3108P108SCctTct11B.1.177.40.000211
ORF1ab/nsp3108P108LcCtcTt11B.1.177.40.000211
ORF1ab/nsp3108P108PccTccC11B.1.177.440.000519
ORF1ab/nsp3108P108PccTccC11B.1.177.460.000918
ORF1ab/nsp3108P108HcCtcAt11B.1.177.600.000218
ORF1ab/nsp3108P108SCctTct11B.1.177.650.000665
ORF1ab/nsp3108P108SCctTct11B.1.177.730.000566
ORF1ab/nsp3108P108HcCtcAt11B.1.177.830.001481
ORF1ab/nsp3108P108LcCtcTt11B.1.177.870.000728
ORF1ab/nsp3108P108LcCtcTt11B.1.2210.000071
ORF1ab/nsp3108P108HcCtcAt11B.1.2340.000132
ORF1ab/nsp3108P108SCctTct11B.1.2340.000132
ORF1ab/nsp3108P108PccTccC11B.1.2410.000812
ORF1ab/nsp3108P108LcCtcTt11B.1.3240.001605
ORF1ab/nsp3108P108SCctTct11B.1.3460.001311
ORF1ab/nsp3108P108PccTccC11B.1.3490.000715
ORF1ab/nsp3108P108delCCT---11B.1.3490.000715
ORF1ab/nsp3108P108PccTccC11B.1.3510.00003
ORF1ab/nsp3108P108SCctTct11B.1.3510.00003
ORF1ab/nsp3108P108LcCtcTt11B.1.351.20.000303
ORF1ab/nsp3108P108PccTccA11B.1.351.30.000876
ORF1ab/nsp3108P108SCctTct11B.1.3610.001289
ORF1ab/nsp3108P108LcCtcTt11B.1.3670.000792
ORF1ab/nsp3108P108HcCtcAt11B.1.3690.000285
ORF1ab/nsp3108P108PccTccC11B.1.4110.003704
ORF1ab/nsp3108P108delCCT---11B.1.416.10.001563
ORF1ab/nsp3108P108PccTccC11B.1.4260.001009
ORF1ab/nsp3108P108HcCtcAt11B.1.4270.00005
ORF1ab/nsp3108P108SCctTct11B.1.4270.00005
ORF1ab/nsp3108P108delCCT---11B.1.4290.000024
ORF1ab/nsp3108P108HcCtcAt11B.1.4290.000024
ORF1ab/nsp3108P108SCctTct11B.1.438.10.000107
ORF1ab/nsp3108P108PccTccC11B.1.4660.023256
ORF1ab/nsp3108P108HcCtcAt11B.1.466.20.000391
ORF1ab/nsp3108P108SCctTct11B.1.4690.00361
ORF1ab/nsp3108P108SCctTct11B.1.5250.000113
ORF1ab/nsp3108P108delCCT---11B.1.5610.000397
ORF1ab/nsp3108P108delCCT---11B.1.5770.000687
ORF1ab/nsp3108P108SCctTct11B.1.5820.000491
ORF1ab/nsp3108P108LcCtcTt11B.1.5880.00091
ORF1ab/nsp3108P108SCctTct11B.1.5950.000261
ORF1ab/nsp3108P108HcCtcAt11B.1.6090.000479
ORF1ab/nsp3108P108PccTccC11B.1.6090.000479
ORF1ab/nsp3108P108PccTccC11B.1.619.10.000641
ORF1ab/nsp3108P108LcCtcTt11B.1.6210.000089
ORF1ab/nsp3108P108PccTccC11B.1.621.10.000506
ORF1ab/nsp3108P108HcCtcAt11B.1.6370.000073
ORF1ab/nsp3108P108PccTccC11B.400.000364
ORF1ab/nsp3108P108LcCtcTt11B.400.000364
ORF1ab/nsp3108P108SCctTct11B.470.020408
ORF1ab/nsp3108P108HcCtcAt11B.6.80.008264
ORF1ab/nsp3108P108SCctTct11C.37.10.002618
ORF1ab/nsp3108P108HcCtcAt11D.20.000075
ORF1ab/nsp3108P108HcCtcAt11P.1.150.000232
ORF1ab/nsp3108P108SCctTct11P.1.160.000374
ORF1ab/nsp3108P108RcCtcGt11P.20.000187
ORF1ab/nsp3108P108TCctAct11Q.10.000126
ORF1ab/nsp3108P108SCctTct11Q.80.000165
ORF1ab/nsp3108P108PccTccC11Q.80.000165
ORF1ab/nsp3108P108LcCtcTt11R.10.00009

CoV-GLUE is still in development. CoV-GLUE was originally developed as part of COG-UK by Josh Singer using the GLUE framework at the MRC-University of Glasgow Centre for Virus Research (CVR). In 2021 it was redeveloped by Richard Orton to scale to the millions of genome sequences available. We acknowledge support from the MRC (MC_UU_12014/12), WT (220977/Z/20/Z) and UKRI G2P (MR/W005611/1). Please contact Richard Orton with any queries: Richard.Orton@glasgow.ac.uk

CoV-GLUE uses sequence data from GISAID. GISAID data provided via this web application is subject to GISAID's Terms and Conditions.