CoV-GLUE | Mutations | Mutation

CoV-GLUE Mutation: ORF = ORF1ab/nsp3 : CodonNum = 1077

Details of the codons used for the mutation across all lineages (CodonProp is the proportion each codon is used for this AA mutation):

ORFCodonNumMutORF1abMutMutTypeRefCodonMutCodonAACountCodonCountCodonPropGenome Position
ORF1ab/nsp31077K1077NK1895NnonsynaaGaaT507049860.9834325948-5950
ORF1ab/nsp31077K1077NK1895NnonsynaaGaaC5070840.0165685948-5950
ORF1ab/nsp31077K1077RK1895RnonsynaAgaGg328432800.9987825948-5950
ORF1ab/nsp31077K1077RK1895RnonsynaAGaGA328440.001218035948-5950
ORF1ab/nsp31077K1077KK1895KsynaaGaaA2027202715948-5950
ORF1ab/nsp31077K1077delK1895deldelAAG---11411415948-5950
ORF1ab/nsp31077K1077EK1895EnonsynAagGag47460.9787235948-5950
ORF1ab/nsp31077K1077EK1895EnonsynAaGGaA4710.02127665948-5950
ORF1ab/nsp31077K1077TK1895TnonsynaAgaCg32270.843755948-5950
ORF1ab/nsp31077K1077TK1895TnonsynaAGaCT3240.1255948-5950
ORF1ab/nsp31077K1077TK1895TnonsynaAGaCA3210.031255948-5950
ORF1ab/nsp31077K1077MK1895MnonsynaAgaTg161615948-5950
ORF1ab/nsp31077K1077SK1895SnonsynAAgTCg940.4444445948-5950
ORF1ab/nsp31077K1077SK1895SnonsynAAGTCT940.4444445948-5950
ORF1ab/nsp31077K1077SK1895SnonsynaAGaGT910.1111115948-5950
ORF1ab/nsp31077K1077XK1895XnonsynAagTag870.8755948-5950
ORF1ab/nsp31077K1077XK1895XnonsynAaGTaA810.1255948-5950
ORF1ab/nsp31077K1077del2K1895del2delaAGa--730.4285715948-5950
ORF1ab/nsp31077K1077del2K1895del2delAAg--g720.2857145948-5950
ORF1ab/nsp31077K1077del2K1895del2delAAG--N710.1428575948-5950
ORF1ab/nsp31077K1077del2K1895del2delAAGG--710.1428575948-5950
ORF1ab/nsp31077K1077QK1895QnonsynAagCag650.8333335948-5950
ORF1ab/nsp31077K1077QK1895QnonsynAaGCaA610.1666675948-5950
ORF1ab/nsp31077K1077del1K1895del1delAag-ag520.45948-5950
ORF1ab/nsp31077K1077del1K1895del1delAaGTa-510.25948-5950
ORF1ab/nsp31077K1077del1K1895del1delaaGaa-510.25948-5950
ORF1ab/nsp31077K1077del1K1895del1delAAG-NN510.25948-5950
ORF1ab/nsp31077K1077YK1895YnonsynAaGTaT4415948-5950
ORF1ab/nsp31077K1077LK1895LnonsynAAGCTT2215948-5950
ORF1ab/nsp31077K1077HK1895HnonsynAaGCaC1115948-5950

Details of the mutation no within lineages (LineageCodonProp is the proportion the codon is observed at, at this particular site, on each lineage):

ORFCodonNumMutRefCodonMutCodonCodonCountAACountLineageLineageCodonProp
ORF1ab/nsp31077K1077NaaGaaT49865070All0.000954
ORF1ab/nsp31077K1077NaaGaaC845070All0.000016
ORF1ab/nsp31077K1077RaAgaGg32803284All0.000627
ORF1ab/nsp31077K1077RaAGaGA43284All0.000001
ORF1ab/nsp31077K1077RaAgaGg31343138B.1.1600.097742
ORF1ab/nsp31077K1077RaAGaGA43138B.1.1600.000125
ORF1ab/nsp31077K1077KaaGaaA20272027All0.000388
ORF1ab/nsp31077K1077KaaGaaA13091309B.1.36.270.999237
ORF1ab/nsp31077K1077NaaGaaT11381138C.350.880805
ORF1ab/nsp31077K1077NaaGaaT845845B.1.1.700.288199
ORF1ab/nsp31077K1077NaaGaaT517517B.1.2580.034405
ORF1ab/nsp31077K1077NaaGaaT283357B.1.1.70.000253
ORF1ab/nsp31077K1077NaaGaaC74357B.1.1.70.000066
ORF1ab/nsp31077K1077NaaGaaT292292B.1.1770.003845
ORF1ab/nsp31077K1077KaaGaaA265265B.1.360.038664
ORF1ab/nsp31077K1077NaaGaaT255258B.10.002336
ORF1ab/nsp31077K1077NaaGaaC3258B.10.000027
ORF1ab/nsp31077K1077NaaGaaT182182B.1.617.20.000685
ORF1ab/nsp31077K1077KaaGaaA153153AY.34.10.078021
ORF1ab/nsp31077K1077delAAG---114114All0.000022
ORF1ab/nsp31077K1077KaaGaaA8686B.1.1.70.000077
ORF1ab/nsp31077K1077NaaGaaT8585AY.9.20.003122
ORF1ab/nsp31077K1077NaaGaaT8484AY.40.000131
ORF1ab/nsp31077K1077NaaGaaT8383AY.60.003414
ORF1ab/nsp31077K1077NaaGaaT7777B.1.6210.006816
ORF1ab/nsp31077K1077NaaGaaT6868B.1.1.1111
ORF1ab/nsp31077K1077delAAG---6363B.1.1.70.000056
ORF1ab/nsp31077K1077NaaGaaT6262B.1.1.500.042091
ORF1ab/nsp31077K1077NaaGaaT6262B.1.20.000546
ORF1ab/nsp31077K1077NaaGaaT5353AY.430.000235
ORF1ab/nsp31077K1077NaaGaaT5252B.1.2340.006861
ORF1ab/nsp31077K1077NaaGaaT5151B.1.177.750.05307
ORF1ab/nsp31077K1077RaAgaGg5050B.1.160.80.064433
ORF1ab/nsp31077K1077NaaGaaT4649AY.1030.000286
ORF1ab/nsp31077K1077NaaGaaC349AY.1030.000019
ORF1ab/nsp31077K1077EAagGag4647All0.000009
ORF1ab/nsp31077K1077EAaGGaA147All0
ORF1ab/nsp31077K1077NaaGaaT4242B.1.5960.00366
ORF1ab/nsp31077K1077NaaGaaT3939AY.200.001516
ORF1ab/nsp31077K1077NaaGaaT3939AY.30.000388
ORF1ab/nsp31077K1077KaaGaaA3636B.1.36.220.043478
ORF1ab/nsp31077K1077TaAgaCg2732All0.000005
ORF1ab/nsp31077K1077TaAGaCT432All0.000001
ORF1ab/nsp31077K1077TaAGaCA132All0
ORF1ab/nsp31077K1077KaaGaaA3232B.1.177.440.016606
ORF1ab/nsp31077K1077NaaGaaT3131AY.250.000186
ORF1ab/nsp31077K1077NaaGaaT2727AY.1020.000716
ORF1ab/nsp31077K1077RaAgaGg2727AY.630.010445
ORF1ab/nsp31077K1077NaaGaaT2727B.1.10.00049
ORF1ab/nsp31077K1077NaaGaaT2121B.1.4290.000494
ORF1ab/nsp31077K1077NaaGaaT2020P.10.000315
ORF1ab/nsp31077K1077NaaGaaT1919B.1.2210.00135
ORF1ab/nsp31077K1077NaaGaaT1919B.1.360.002772
ORF1ab/nsp31077K1077KaaGaaA1818AY.440.00011
ORF1ab/nsp31077K1077NaaGaaT1717AY.980.001343
ORF1ab/nsp31077K1077NaaGaaT1717B.1.1600.00053
ORF1ab/nsp31077K1077MaAgaTg1616All0.000003
ORF1ab/nsp31077K1077NaaGaaT1616AY.1200.000595
ORF1ab/nsp31077K1077NaaGaaT1515B.1.5260.000353
ORF1ab/nsp31077K1077NaaGaaT1414AY.440.000085
ORF1ab/nsp31077K1077RaAgaGg1414B.1.1.70.000013
ORF1ab/nsp31077K1077NaaGaaT1313B.1.1.4590.2
ORF1ab/nsp31077K1077KaaGaaA1212AY.1030.000075
ORF1ab/nsp31077K1077NaaGaaT1212B.1.1.3720.008264
ORF1ab/nsp31077K1077NaaGaaT1111B.1.1.5190.000437
ORF1ab/nsp31077K1077RaAgaGg1111B.1.4290.000259
ORF1ab/nsp31077K1077NaaGaaT1010B.1.1.250.005685
ORF1ab/nsp31077K1077NaaGaaT1010B.1.258.240.107527
ORF1ab/nsp31077K1077SAAGTCT49All0.000001
ORF1ab/nsp31077K1077SAAgTCg49All0.000001
ORF1ab/nsp31077K1077SaAGaGT19All0
ORF1ab/nsp31077K1077NaaGaaT99AY.3.10.000767
ORF1ab/nsp31077K1077NaaGaaT99AY.4.50.000967
ORF1ab/nsp31077K1077NaaGaaT99B.1.1.10.00294
ORF1ab/nsp31077K1077NaaGaaT99P.1.150.002091
ORF1ab/nsp31077K1077XAagTag78All0.000001
ORF1ab/nsp31077K1077XAaGTaA18All0
ORF1ab/nsp31077K1077NaaGaaT88AY.290.000126
ORF1ab/nsp31077K1077KaaGaaA88AY.40.000012
ORF1ab/nsp31077K1077KaaGaaA88B.1.1.5260.028369
ORF1ab/nsp31077K1077NaaGaaT88B.1.160.320.034335
ORF1ab/nsp31077K1077del2aAGa--37All0.000001
ORF1ab/nsp31077K1077del2AAg--g27All0
ORF1ab/nsp31077K1077del2AAGG--17All0
ORF1ab/nsp31077K1077del2AAG--N17All0
ORF1ab/nsp31077K1077NaaGaaT77AY.360.001037
ORF1ab/nsp31077K1077KaaGaaA77AY.9.20.000257
ORF1ab/nsp31077K1077KaaGaaA77B.10.000064
ORF1ab/nsp31077K1077delAAG---77B.1.10.000127
ORF1ab/nsp31077K1077NaaGaaT77B.1.177.440.003633
ORF1ab/nsp31077K1077KaaGaaA77B.1.5170.002989
ORF1ab/nsp31077K1077RaAgaGg77D.20.000525
ORF1ab/nsp31077K1077QAagCag56All0.000001
ORF1ab/nsp31077K1077QAaGCaA16All0
ORF1ab/nsp31077K1077NaaGaaT66AY.260.00017
ORF1ab/nsp31077K1077KaaGaaA66AY.430.000027
ORF1ab/nsp31077K1077NaaGaaT66AY.610.000629
ORF1ab/nsp31077K1077EAagGag66B.1.20.000053
ORF1ab/nsp31077K1077NaaGaaT66B.1.5510.007742
ORF1ab/nsp31077K1077KaaGaaA66B.1.617.20.000023
ORF1ab/nsp31077K1077EAagGag66B.1.617.20.000023
ORF1ab/nsp31077K1077NaaGaaT66B.1.6280.002114
ORF1ab/nsp31077K1077del1Aag-ag25All0
ORF1ab/nsp31077K1077del1AAG-NN15All0
ORF1ab/nsp31077K1077del1aaGaa-15All0
ORF1ab/nsp31077K1077del1AaGTa-15All0
ORF1ab/nsp31077K1077NaaGaaT55AY.330.000334
ORF1ab/nsp31077K1077NaaGaaT55AY.620.002179
ORF1ab/nsp31077K1077NaaGaaT55AY.750.00028
ORF1ab/nsp31077K1077NaaGaaT55AY.910.003652
ORF1ab/nsp31077K1077NaaGaaT55AY.98.10.000242
ORF1ab/nsp31077K1077EAagGag55B.1.1.2070.00591
ORF1ab/nsp31077K1077KaaGaaA55B.1.1.250.002843
ORF1ab/nsp31077K1077NaaGaaT55B.1.1.3680.015432
ORF1ab/nsp31077K1077NaaGaaT55B.1.1.4480.010163
ORF1ab/nsp31077K1077MaAgaTg55B.1.1.70.000004
ORF1ab/nsp31077K1077KaaGaaA55B.1.20.000044
ORF1ab/nsp31077K1077NaaGaaT55B.1.258.140.004902
ORF1ab/nsp31077K1077RaAgaGg55B.1.5260.000118
ORF1ab/nsp31077K1077delAAG---55B.1.617.20.000019
ORF1ab/nsp31077K1077TaAgaCg45B.1.617.20.000015
ORF1ab/nsp31077K1077TaAGaCT15B.1.617.20.000004
ORF1ab/nsp31077K1077NaaGaaT55Q.30.000725
ORF1ab/nsp31077K1077YAaGTaT44All0.000001
ORF1ab/nsp31077K1077KaaGaaA44AY.1020.000106
ORF1ab/nsp31077K1077RaAgaGg44AY.1030.000025
ORF1ab/nsp31077K1077NaaGaaT44AY.270.000259
ORF1ab/nsp31077K1077TaAgaCg44AY.30.00004
ORF1ab/nsp31077K1077NaaGaaT44AY.390.000099
ORF1ab/nsp31077K1077delAAG---44AY.40.000006
ORF1ab/nsp31077K1077KaaGaaA44AY.670.001857
ORF1ab/nsp31077K1077EAagGag44B0.000511
ORF1ab/nsp31077K1077EAagGag44B.10.000037
ORF1ab/nsp31077K1077RaAgaGg44B.10.000037
ORF1ab/nsp31077K1077NaaGaaT44B.1.1.330.001684
ORF1ab/nsp31077K1077KaaGaaA44B.1.177.80.00301
ORF1ab/nsp31077K1077RaAgaGg44B.1.20.000035
ORF1ab/nsp31077K1077NaaGaaT44B.1.2430.000278
ORF1ab/nsp31077K1077NaaGaaT44B.1.258.170.000416
ORF1ab/nsp31077K1077NaaGaaT44B.1.3690.001141
ORF1ab/nsp31077K1077KaaGaaA44B.1.4680.022857
ORF1ab/nsp31077K1077TaAgaCg44B.1.6210.000354
ORF1ab/nsp31077K1077NaaGaaT44C.36.30.002269
ORF1ab/nsp31077K1077KaaGaaA44P.10.000063
ORF1ab/nsp31077K1077EAagGag33AY.1020.00008
ORF1ab/nsp31077K1077NaaGaaT23AY.1130.000285
ORF1ab/nsp31077K1077NaaGaaC13AY.1130.000142
ORF1ab/nsp31077K1077NaaGaaT33AY.130.000483
ORF1ab/nsp31077K1077KaaGaaA33AY.250.000018
ORF1ab/nsp31077K1077MaAgaTg33AY.4.50.000322
ORF1ab/nsp31077K1077NaaGaaT33AY.450.000365
ORF1ab/nsp31077K1077RaAgaGg33AY.460.000312
ORF1ab/nsp31077K1077NaaGaaT33AY.460.000312
ORF1ab/nsp31077K1077NaaGaaT33AY.470.000093
ORF1ab/nsp31077K1077NaaGaaT33AY.740.000347
ORF1ab/nsp31077K1077NaaGaaT33AY.940.001328
ORF1ab/nsp31077K1077EAagGag33B.1.10.000054
ORF1ab/nsp31077K1077NaaGaaT33B.1.1.2220.000612
ORF1ab/nsp31077K1077EAagGag33B.1.1.70.000003
ORF1ab/nsp31077K1077del2AAg--g23B.1.1.70.000002
ORF1ab/nsp31077K1077del2AAG--N13B.1.1.70.000001
ORF1ab/nsp31077K1077KaaGaaA33B.1.2600.010033
ORF1ab/nsp31077K1077NaaGaaT33B.1.3510.000089
ORF1ab/nsp31077K1077NaaGaaT33B.1.36.170.001482
ORF1ab/nsp31077K1077NaaGaaT33B.1.466.20.001174
ORF1ab/nsp31077K1077NaaGaaT33C.370.000348
ORF1ab/nsp31077K1077NaaGaaT33P.1.140.000143
ORF1ab/nsp31077K1077NaaGaaT33P.1.40.00293
ORF1ab/nsp31077K1077LAAGCTT22All0
ORF1ab/nsp31077K1077RaAgaGg22AY.1020.000053
ORF1ab/nsp31077K1077NaaGaaT22AY.1180.000125
ORF1ab/nsp31077K1077NaaGaaT22AY.120.20.002571
ORF1ab/nsp31077K1077NaaGaaT22AY.140.000176
ORF1ab/nsp31077K1077NaaGaaT22AY.230.000139
ORF1ab/nsp31077K1077TaAgaCg22AY.40.000003
ORF1ab/nsp31077K1077EAagGag22AY.40.000003
ORF1ab/nsp31077K1077NaaGaaT22AY.46.60.000144
ORF1ab/nsp31077K1077SAAGTCT12AY.46.60.000072
ORF1ab/nsp31077K1077SAAgTCg12AY.46.60.000072
ORF1ab/nsp31077K1077TaAGaCT12AY.46.60.000072
ORF1ab/nsp31077K1077TaAgaCg12AY.46.60.000072
ORF1ab/nsp31077K1077KaaGaaA22AY.470.000062
ORF1ab/nsp31077K1077delAAG---22AY.670.000929
ORF1ab/nsp31077K1077NaaGaaT22AY.75.10.000361
ORF1ab/nsp31077K1077TaAGaCT12AY.990.001049
ORF1ab/nsp31077K1077SAAgTCg12AY.990.001049
ORF1ab/nsp31077K1077SAAGTCT12AY.990.001049
ORF1ab/nsp31077K1077TaAgaCg12AY.990.001049
ORF1ab/nsp31077K1077NaaGaaT22AZ.10.001735
ORF1ab/nsp31077K1077delAAG---22AZ.20.001642
ORF1ab/nsp31077K1077NaaGaaT22B0.000256
ORF1ab/nsp31077K1077delAAG---22B.10.000018
ORF1ab/nsp31077K1077TaAgaCg12B.10.000009
ORF1ab/nsp31077K1077SAAGTCT12B.10.000009
ORF1ab/nsp31077K1077SAAgTCg12B.10.000009
ORF1ab/nsp31077K1077TaAGaCT12B.10.000009
ORF1ab/nsp31077K1077KaaGaaA22B.1.10.000036
ORF1ab/nsp31077K1077MaAgaTg22B.1.10.000036
ORF1ab/nsp31077K1077NaaGaaT22B.1.1.1700.002494
ORF1ab/nsp31077K1077KaaGaaA22B.1.1.1760.000879
ORF1ab/nsp31077K1077NaaGaaT22B.1.1.280.000622
ORF1ab/nsp31077K1077NaaGaaT22B.1.1.3060.000877
ORF1ab/nsp31077K1077NaaGaaT22B.1.1.4110.029412
ORF1ab/nsp31077K1077TaAgaCg22B.1.1.5190.000079
ORF1ab/nsp31077K1077KaaGaaA22B.1.1.5280.009615
ORF1ab/nsp31077K1077NaaGaaT22B.1.1.570.022989
ORF1ab/nsp31077K1077NaaGaaT22B.1.110.30.001437
ORF1ab/nsp31077K1077MaAgaTg22B.1.1770.000026
ORF1ab/nsp31077K1077delAAG---22B.1.1770.000026
ORF1ab/nsp31077K1077NaaGaaT22B.1.177.860.000367
ORF1ab/nsp31077K1077KaaGaaA22B.1.36.160.002849
ORF1ab/nsp31077K1077NaaGaaT22B.1.3960.001411
ORF1ab/nsp31077K1077NaaGaaT22B.1.4080.00738
ORF1ab/nsp31077K1077EAagGag22B.1.4290.000047
ORF1ab/nsp31077K1077NaaGaaT22B.1.4650.007605
ORF1ab/nsp31077K1077EAagGag22B.1.5260.000047
ORF1ab/nsp31077K1077NaaGaaT22B.1.564.10.003155
ORF1ab/nsp31077K1077RaAgaGg22B.1.617.20.000008
ORF1ab/nsp31077K1077SAAgTCg12B.1.617.20.000004
ORF1ab/nsp31077K1077SAAGTCT12B.1.617.20.000004
ORF1ab/nsp31077K1077NaaGaaT22B.40.004415
ORF1ab/nsp31077K1077MaAgaTg22C.370.000232
ORF1ab/nsp31077K1077XAagTag12C.60.037037
ORF1ab/nsp31077K1077XAaGTaA12C.60.037037
ORF1ab/nsp31077K1077NaaGaaT22D.20.00015
ORF1ab/nsp31077K1077NaaGaaT22P.20.000373
ORF1ab/nsp31077K1077NaaGaaC22Q.80.00033
ORF1ab/nsp31077K1077EAagGag11A.2.40.003367
ORF1ab/nsp31077K1077NaaGaaT11A.2.40.003367
ORF1ab/nsp31077K1077NaaGaaT11A.23.10.000704
ORF1ab/nsp31077K1077delAAG---11AD.20.000219
ORF1ab/nsp31077K1077NaaGaaT11AD.20.000219
ORF1ab/nsp31077K1077NaaGaaT11AE.30.032258
ORF1ab/nsp31077K1077HAaGCaC11All0
ORF1ab/nsp31077K1077NaaGaaT11AU.20.002421
ORF1ab/nsp31077K1077EAaGGaA11AY.1030.000006
ORF1ab/nsp31077K1077delAAG---11AY.1030.000006
ORF1ab/nsp31077K1077TaAgaCg11AY.1080.001103
ORF1ab/nsp31077K1077delAAG---11AY.1130.000142
ORF1ab/nsp31077K1077NaaGaaT11AY.1170.000085
ORF1ab/nsp31077K1077NaaGaaT11AY.1190.000035
ORF1ab/nsp31077K1077NaaGaaT11AY.120.000316
ORF1ab/nsp31077K1077NaaGaaT11AY.120.2.10.000498
ORF1ab/nsp31077K1077NaaGaaT11AY.1210.000135
ORF1ab/nsp31077K1077NaaGaaT11AY.160.00038
ORF1ab/nsp31077K1077KaaGaaA11AY.16.10.00047
ORF1ab/nsp31077K1077KaaGaaA11AY.200.000039
ORF1ab/nsp31077K1077RaAgaGg11AY.230.00007
ORF1ab/nsp31077K1077del1aaGaa-11AY.250.000006
ORF1ab/nsp31077K1077delAAG---11AY.250.000006
ORF1ab/nsp31077K1077RaAgaGg11AY.250.000006
ORF1ab/nsp31077K1077delAAG---11AY.290.000016
ORF1ab/nsp31077K1077EAagGag11AY.30.00001
ORF1ab/nsp31077K1077KaaGaaA11AY.320.000532
ORF1ab/nsp31077K1077RaAgaGg11AY.340.000097
ORF1ab/nsp31077K1077KaaGaaA11AY.340.000097
ORF1ab/nsp31077K1077NaaGaaT11AY.340.000097
ORF1ab/nsp31077K1077delAAG---11AY.360.000148
ORF1ab/nsp31077K1077EAagGag11AY.390.000025
ORF1ab/nsp31077K1077RaAgaGg11AY.390.000025
ORF1ab/nsp31077K1077KaaGaaA11AY.39.10.00004
ORF1ab/nsp31077K1077QAagCag11AY.40.000002
ORF1ab/nsp31077K1077NaaGaaT11AY.4.20.000022
ORF1ab/nsp31077K1077delAAG---11AY.4.30.000842
ORF1ab/nsp31077K1077NaaGaaT11AY.400.000964
ORF1ab/nsp31077K1077NaaGaaT11AY.420.00004
ORF1ab/nsp31077K1077delAAG---11AY.430.000004
ORF1ab/nsp31077K1077QAagCag11AY.430.000004
ORF1ab/nsp31077K1077XAagTag11AY.430.000004
ORF1ab/nsp31077K1077TaAgaCg11AY.430.000004
ORF1ab/nsp31077K1077EAagGag11AY.430.000004
ORF1ab/nsp31077K1077del2aAGa--11AY.430.000004
ORF1ab/nsp31077K1077delAAG---11AY.440.000006
ORF1ab/nsp31077K1077TaAgaCg11AY.440.000006
ORF1ab/nsp31077K1077EAagGag11AY.440.000006
ORF1ab/nsp31077K1077KaaGaaA11AY.450.000122
ORF1ab/nsp31077K1077del1Aag-ag11AY.460.000104
ORF1ab/nsp31077K1077RaAgaGg11AY.46.10.001027
ORF1ab/nsp31077K1077NaaGaaT11AY.46.10.001027
ORF1ab/nsp31077K1077KaaGaaA11AY.46.20.000635
ORF1ab/nsp31077K1077XAagTag11AY.46.60.000072
ORF1ab/nsp31077K1077YAaGTaT11AY.46.60.000072
ORF1ab/nsp31077K1077NaaGaaT11AY.50.000021
ORF1ab/nsp31077K1077delAAG---11AY.5.30.000337
ORF1ab/nsp31077K1077NaaGaaT11AY.5.30.000337
ORF1ab/nsp31077K1077NaaGaaT11AY.510.000909
ORF1ab/nsp31077K1077NaaGaaT11AY.540.000095
ORF1ab/nsp31077K1077delAAG---11AY.540.000095
ORF1ab/nsp31077K1077EAagGag11AY.540.000095
ORF1ab/nsp31077K1077NaaGaaT11AY.590.00053
ORF1ab/nsp31077K1077delAAG---11AY.610.000105
ORF1ab/nsp31077K1077KaaGaaA11AY.650.000533
ORF1ab/nsp31077K1077NaaGaaT11AY.650.000533
ORF1ab/nsp31077K1077delAAG---11AY.650.000533
ORF1ab/nsp31077K1077delAAG---11AY.660.00107
ORF1ab/nsp31077K1077NaaGaaT11AY.660.00107
ORF1ab/nsp31077K1077del1Aag-ag11AY.750.000056
ORF1ab/nsp31077K1077KaaGaaA11AY.75.10.00018
ORF1ab/nsp31077K1077NaaGaaT11AY.800.001129
ORF1ab/nsp31077K1077delAAG---11AY.850.000427
ORF1ab/nsp31077K1077NaaGaaT11AY.90.000068
ORF1ab/nsp31077K1077SaAGaGT11AY.90.000068
ORF1ab/nsp31077K1077RaAgaGg11AY.90.000068
ORF1ab/nsp31077K1077KaaGaaA11AY.980.000079
ORF1ab/nsp31077K1077delAAG---11AY.98.10.000048
ORF1ab/nsp31077K1077XAagTag11AY.990.001049
ORF1ab/nsp31077K1077YAaGTaT11AY.990.001049
ORF1ab/nsp31077K1077NaaGaaT11AY.990.001049
ORF1ab/nsp31077K1077NaaGaaT11AZ.50.003509
ORF1ab/nsp31077K1077YAaGTaT11B.10.000009
ORF1ab/nsp31077K1077XAagTag11B.10.000009
ORF1ab/nsp31077K1077del2AAGG--11B.10.000009
ORF1ab/nsp31077K1077QAagCag11B.1.10.000018
ORF1ab/nsp31077K1077NaaGaaT11B.1.1.1530.001095
ORF1ab/nsp31077K1077NaaGaaT11B.1.1.1890.001513
ORF1ab/nsp31077K1077NaaGaaT11B.1.1.2070.001182
ORF1ab/nsp31077K1077NaaGaaT11B.1.1.2140.000055
ORF1ab/nsp31077K1077RaAgaGg11B.1.1.2940.001266
ORF1ab/nsp31077K1077NaaGaaT11B.1.1.2980.000862
ORF1ab/nsp31077K1077NaaGaaT11B.1.1.3170.000412
ORF1ab/nsp31077K1077delAAG---11B.1.1.3180.000302
ORF1ab/nsp31077K1077NaaGaaT11B.1.1.3180.000302
ORF1ab/nsp31077K1077RaAgaGg11B.1.1.3190.017544
ORF1ab/nsp31077K1077MaAgaTg11B.1.1.3680.003086
ORF1ab/nsp31077K1077QAagCag11B.1.1.3710.010417
ORF1ab/nsp31077K1077NaaGaaT11B.1.1.390.00051
ORF1ab/nsp31077K1077del1AaGTa-11B.1.1.4090.002833
ORF1ab/nsp31077K1077NaaGaaT11B.1.1.4190.007407
ORF1ab/nsp31077K1077NaaGaaT11B.1.1.4340.000349
ORF1ab/nsp31077K1077KaaGaaA11B.1.1.4480.002033
ORF1ab/nsp31077K1077NaaGaaT11B.1.1.470.005348
ORF1ab/nsp31077K1077NaaGaaT11B.1.1.630.000386
ORF1ab/nsp31077K1077TaAgaCg11B.1.1.70.000001
ORF1ab/nsp31077K1077del1AAG-NN11B.1.1.70.000001
ORF1ab/nsp31077K1077HAaGCaC11B.1.1.70.000001
ORF1ab/nsp31077K1077NaaGaaT11B.1.1110.001175
ORF1ab/nsp31077K1077NaaGaaT11B.1.130.002375
ORF1ab/nsp31077K1077NaaGaaT11B.1.1460.004237
ORF1ab/nsp31077K1077delAAG---11B.1.1600.000031
ORF1ab/nsp31077K1077NaaGaaT11B.1.160.140.002119
ORF1ab/nsp31077K1077KaaGaaA11B.1.1640.014925
ORF1ab/nsp31077K1077RaAgaGg11B.1.1770.000013
ORF1ab/nsp31077K1077delAAG---11B.1.177.320.00135
ORF1ab/nsp31077K1077NaaGaaT11B.1.177.350.000691
ORF1ab/nsp31077K1077NaaGaaT11B.1.177.430.001477
ORF1ab/nsp31077K1077NaaGaaT11B.1.177.600.000218
ORF1ab/nsp31077K1077NaaGaaT11B.1.177.730.000566
ORF1ab/nsp31077K1077delAAG---11B.1.177.730.000566
ORF1ab/nsp31077K1077TaAGaCA11B.1.177.770.000726
ORF1ab/nsp31077K1077NaaGaaT11B.1.177.810.000189
ORF1ab/nsp31077K1077TaAgaCg11B.1.20.000009
ORF1ab/nsp31077K1077NaaGaaT11B.1.2140.003663
ORF1ab/nsp31077K1077NaaGaaT11B.1.2220.001692
ORF1ab/nsp31077K1077NaaGaaT11B.1.2400.000216
ORF1ab/nsp31077K1077XAagTag11B.1.2430.00007
ORF1ab/nsp31077K1077delAAG---11B.1.2580.000067
ORF1ab/nsp31077K1077del2aAGa--11B.1.2580.000067
ORF1ab/nsp31077K1077NaaGaaT11B.1.258.110.000396
ORF1ab/nsp31077K1077NaaGaaT11B.1.258.210.007752
ORF1ab/nsp31077K1077NaaGaaT11B.1.2790.000514
ORF1ab/nsp31077K1077NaaGaaT11B.1.3240.001605
ORF1ab/nsp31077K1077delAAG---11B.1.3510.00003
ORF1ab/nsp31077K1077NaaGaaT11B.1.36.310.001751
ORF1ab/nsp31077K1077KaaGaaA11B.1.36.330.007576
ORF1ab/nsp31077K1077KaaGaaA11B.1.36.340.021277
ORF1ab/nsp31077K1077NaaGaaT11B.1.36.380.001642
ORF1ab/nsp31077K1077NaaGaaT11B.1.3670.000792
ORF1ab/nsp31077K1077NaaGaaT11B.1.3990.001934
ORF1ab/nsp31077K1077TaAgaCg11B.1.4000.000429
ORF1ab/nsp31077K1077NaaGaaT11B.1.4270.00005
ORF1ab/nsp31077K1077NaaGaaT11B.1.4370.020833
ORF1ab/nsp31077K1077NaaGaaT11B.1.438.10.000107
ORF1ab/nsp31077K1077NaaGaaT11B.1.4560.003268
ORF1ab/nsp31077K1077NaaGaaT11B.1.4730.019231
ORF1ab/nsp31077K1077RaAgaGg11B.1.4730.019231
ORF1ab/nsp31077K1077NaaGaaT11B.1.4800.002488
ORF1ab/nsp31077K1077NaaGaaT11B.1.4970.000315
ORF1ab/nsp31077K1077NaaGaaT11B.1.4990.00105
ORF1ab/nsp31077K1077NaaGaaT11B.1.5240.001406
ORF1ab/nsp31077K1077NaaGaaT11B.1.5250.000113
ORF1ab/nsp31077K1077NaaGaaT11B.1.5270.003704
ORF1ab/nsp31077K1077RaAgaGg11B.1.5330.009615
ORF1ab/nsp31077K1077KaaGaaA11B.1.5370.02
ORF1ab/nsp31077K1077NaaGaaT11B.1.5380.008065
ORF1ab/nsp31077K1077NaaGaaT11B.1.5400.009709
ORF1ab/nsp31077K1077NaaGaaT11B.1.5440.006024
ORF1ab/nsp31077K1077TaAgaCg11B.1.5560.007519
ORF1ab/nsp31077K1077NaaGaaT11B.1.5600.00463
ORF1ab/nsp31077K1077NaaGaaT11B.1.5610.000397
ORF1ab/nsp31077K1077TaAgaCg11B.1.5750.000303
ORF1ab/nsp31077K1077NaaGaaC11B.1.5760.000907
ORF1ab/nsp31077K1077KaaGaaA11B.1.5760.000907
ORF1ab/nsp31077K1077KaaGaaA11B.1.5770.000687
ORF1ab/nsp31077K1077QAagCag11B.1.5810.009434
ORF1ab/nsp31077K1077QAaGCaA11B.1.5960.000087
ORF1ab/nsp31077K1077NaaGaaT11B.1.6090.000479
ORF1ab/nsp31077K1077RaAgaGg11B.1.6090.000479
ORF1ab/nsp31077K1077NaaGaaT11B.1.617.10.000129
ORF1ab/nsp31077K1077LAAGCTT11B.1.617.10.000129
ORF1ab/nsp31077K1077KaaGaaA11B.1.617.10.000129
ORF1ab/nsp31077K1077XAagTag11B.1.617.20.000004
ORF1ab/nsp31077K1077YAaGTaT11B.1.617.20.000004
ORF1ab/nsp31077K1077LAAGCTT11B.1.617.20.000004
ORF1ab/nsp31077K1077NaaGaaT11B.1.6260.005714
ORF1ab/nsp31077K1077NaaGaaT11B.1.6330.041667
ORF1ab/nsp31077K1077KaaGaaA11B.1.6370.000073
ORF1ab/nsp31077K1077delAAG---11B.150.017544
ORF1ab/nsp31077K1077NaaGaaT11B.380.02381
ORF1ab/nsp31077K1077NaaGaaT11C.260.007353
ORF1ab/nsp31077K1077delAAG---11C.350.000774
ORF1ab/nsp31077K1077delAAG---11C.360.000911
ORF1ab/nsp31077K1077KaaGaaA11C.60.037037
ORF1ab/nsp31077K1077NaaGaaT11K.10.02381
ORF1ab/nsp31077K1077MaAgaTg11P.10.000016
ORF1ab/nsp31077K1077delAAG---11P.10.000016
ORF1ab/nsp31077K1077del2aAGa--11P.1.10.000318
ORF1ab/nsp31077K1077NaaGaaT11P.1.120.000484
ORF1ab/nsp31077K1077KaaGaaA11P.1.150.000232
ORF1ab/nsp31077K1077NaaGaaT11P.1.170.000162
ORF1ab/nsp31077K1077RaAgaGg11P.1.170.000162
ORF1ab/nsp31077K1077delAAG---11Q.20.000613