CoV-GLUE | Mutations | Mutation
Details of the codons used for the mutation across all lineages (CodonProp is the proportion each codon is used for this AA mutation):
ORF | CodonNum | Mut | ORF1abMut | MutType | RefCodon | MutCodon | AACount | CodonCount | CodonProp | Genome Position |
ORF1ab/nsp3 | 1075 | D1075D | D1893D | syn | gaC | gaT | 74808 | 74808 | 1 | 5942-5944 |
Details of the mutation no within lineages (LineageCodonProp is the proportion the codon is observed at, at this particular site, on each lineage):
ORF | CodonNum | Mut | RefCodon | MutCodon | CodonCount | AACount | Lineage | LineageCodonProp |
ORF1ab/nsp3 | 1075 | D1075D | gaC | gaT | 74808 | 74808 | All | 0.014308 |
ORF1ab/nsp3 | 1075 | D1075D | gaC | gaT | 72732 | 72732 | B.1.1.7 | 0.065111 |
ORF1ab/nsp3 | 1075 | D1075D | gaC | gaT | 767 | 767 | Q.7 | 0.852222 |
ORF1ab/nsp3 | 1075 | D1075D | gaC | gaT | 186 | 186 | B.1.1.303 | 0.513812 |
ORF1ab/nsp3 | 1075 | D1075D | gaC | gaT | 169 | 169 | B.1.351 | 0.005024 |
ORF1ab/nsp3 | 1075 | D1075D | gaC | gaT | 110 | 110 | B.1.526 | 0.002585 |
ORF1ab/nsp3 | 1075 | D1075D | gaC | gaT | 92 | 92 | B.1.177.18 | 0.106729 |
ORF1ab/nsp3 | 1075 | D1075D | gaC | gaT | 90 | 90 | AY.4 | 0.00014 |
ORF1ab/nsp3 | 1075 | D1075D | gaC | gaT | 66 | 66 | Q.1 | 0.008338 |
ORF1ab/nsp3 | 1075 | D1075D | gaC | gaT | 58 | 58 | B.1.1 | 0.001052 |
ORF1ab/nsp3 | 1075 | D1075D | gaC | gaT | 49 | 49 | B.1.617.2 | 0.000185 |
ORF1ab/nsp3 | 1075 | D1075D | gaC | gaT | 41 | 41 | AY.103 | 0.000255 |
ORF1ab/nsp3 | 1075 | D1075D | gaC | gaT | 37 | 37 | AY.54 | 0.003528 |
ORF1ab/nsp3 | 1075 | D1075D | gaC | gaT | 33 | 33 | AY.113 | 0.004699 |
ORF1ab/nsp3 | 1075 | D1075D | gaC | gaT | 32 | 32 | B.1 | 0.000293 |
ORF1ab/nsp3 | 1075 | D1075D | gaC | gaT | 28 | 28 | P.1 | 0.000441 |
ORF1ab/nsp3 | 1075 | D1075D | gaC | gaT | 26 | 26 | B.1.429 | 0.000612 |
ORF1ab/nsp3 | 1075 | D1075D | gaC | gaT | 22 | 22 | AY.43 | 0.000097 |
ORF1ab/nsp3 | 1075 | D1075D | gaC | gaT | 15 | 15 | B.1.177.15 | 0.009464 |
ORF1ab/nsp3 | 1075 | D1075D | gaC | gaT | 14 | 14 | AY.25 | 0.000084 |
ORF1ab/nsp3 | 1075 | D1075D | gaC | gaT | 14 | 14 | Q.8 | 0.002309 |
ORF1ab/nsp3 | 1075 | D1075D | gaC | gaT | 13 | 13 | B.1.1.519 | 0.000516 |
ORF1ab/nsp3 | 1075 | D1075D | gaC | gaT | 12 | 12 | B.1.243 | 0.000835 |
ORF1ab/nsp3 | 1075 | D1075D | gaC | gaT | 9 | 9 | AY.29 | 0.000142 |
ORF1ab/nsp3 | 1075 | D1075D | gaC | gaT | 8 | 8 | AY.120 | 0.000297 |
ORF1ab/nsp3 | 1075 | D1075D | gaC | gaT | 8 | 8 | AY.16 | 0.003037 |
ORF1ab/nsp3 | 1075 | D1075D | gaC | gaT | 8 | 8 | B.1.2 | 0.00007 |
ORF1ab/nsp3 | 1075 | D1075D | gaC | gaT | 8 | 8 | B.1.201 | 0.045455 |
ORF1ab/nsp3 | 1075 | D1075D | gaC | gaT | 7 | 7 | AY.119 | 0.000247 |
ORF1ab/nsp3 | 1075 | D1075D | gaC | gaT | 7 | 7 | AY.23 | 0.000488 |
ORF1ab/nsp3 | 1075 | D1075D | gaC | gaT | 6 | 6 | AY.44 | 0.000037 |
ORF1ab/nsp3 | 1075 | D1075D | gaC | gaT | 6 | 6 | B.1.177 | 0.000079 |
ORF1ab/nsp3 | 1075 | D1075D | gaC | gaT | 5 | 5 | AY.20 | 0.000194 |
ORF1ab/nsp3 | 1075 | D1075D | gaC | gaT | 5 | 5 | AY.27 | 0.000324 |
ORF1ab/nsp3 | 1075 | D1075D | gaC | gaT | 5 | 5 | AY.3 | 0.00005 |
ORF1ab/nsp3 | 1075 | D1075D | gaC | gaT | 5 | 5 | AY.42 | 0.000201 |
ORF1ab/nsp3 | 1075 | D1075D | gaC | gaT | 5 | 5 | B.1.427 | 0.000252 |
ORF1ab/nsp3 | 1075 | D1075D | gaC | gaT | 4 | 4 | AY.100 | 0.000184 |
ORF1ab/nsp3 | 1075 | D1075D | gaC | gaT | 4 | 4 | B.1.258 | 0.000266 |
ORF1ab/nsp3 | 1075 | D1075D | gaC | gaT | 4 | 4 | B.1.596 | 0.000349 |
ORF1ab/nsp3 | 1075 | D1075D | gaC | gaT | 4 | 4 | C.36.3 | 0.002269 |
ORF1ab/nsp3 | 1075 | D1075D | gaC | gaT | 4 | 4 | Q.4 | 0.001819 |
ORF1ab/nsp3 | 1075 | D1075D | gaC | gaT | 3 | 3 | AY.4.2 | 0.000065 |
ORF1ab/nsp3 | 1075 | D1075D | gaC | gaT | 3 | 3 | AY.45 | 0.000365 |
ORF1ab/nsp3 | 1075 | D1075D | gaC | gaT | 3 | 3 | AY.5 | 0.000062 |
ORF1ab/nsp3 | 1075 | D1075D | gaC | gaT | 3 | 3 | B | 0.000383 |
ORF1ab/nsp3 | 1075 | D1075D | gaC | gaT | 3 | 3 | B.1.160 | 0.000094 |
ORF1ab/nsp3 | 1075 | D1075D | gaC | gaT | 3 | 3 | C.37 | 0.000348 |
ORF1ab/nsp3 | 1075 | D1075D | gaC | gaT | 3 | 3 | P.1.14 | 0.000143 |
ORF1ab/nsp3 | 1075 | D1075D | gaC | gaT | 2 | 2 | AY.34 | 0.000194 |
ORF1ab/nsp3 | 1075 | D1075D | gaC | gaT | 2 | 2 | AY.39 | 0.000049 |
ORF1ab/nsp3 | 1075 | D1075D | gaC | gaT | 2 | 2 | AY.5.4 | 0.000553 |
ORF1ab/nsp3 | 1075 | D1075D | gaC | gaT | 2 | 2 | AY.6 | 0.000082 |
ORF1ab/nsp3 | 1075 | D1075D | gaC | gaT | 2 | 2 | AY.7.1 | 0.000225 |
ORF1ab/nsp3 | 1075 | D1075D | gaC | gaT | 2 | 2 | AY.9 | 0.000135 |
ORF1ab/nsp3 | 1075 | D1075D | gaC | gaT | 2 | 2 | AY.98.1 | 0.000097 |
ORF1ab/nsp3 | 1075 | D1075D | gaC | gaT | 2 | 2 | AY.99.2 | 0.000184 |
ORF1ab/nsp3 | 1075 | D1075D | gaC | gaT | 2 | 2 | B.1.1.369 | 0.000892 |
ORF1ab/nsp3 | 1075 | D1075D | gaC | gaT | 2 | 2 | B.1.1.71 | 0.012121 |
ORF1ab/nsp3 | 1075 | D1075D | gaC | gaT | 2 | 2 | B.1.177.73 | 0.001133 |
ORF1ab/nsp3 | 1075 | D1075D | gaC | gaT | 2 | 2 | B.1.375 | 0.001639 |
ORF1ab/nsp3 | 1075 | D1075D | gaC | gaT | 2 | 2 | P.1.7 | 0.000639 |
ORF1ab/nsp3 | 1075 | D1075D | gaC | gaT | 1 | 1 | AY.102 | 0.000027 |
ORF1ab/nsp3 | 1075 | D1075D | gaC | gaT | 1 | 1 | AY.107 | 0.000466 |
ORF1ab/nsp3 | 1075 | D1075D | gaC | gaT | 1 | 1 | AY.116 | 0.000287 |
ORF1ab/nsp3 | 1075 | D1075D | gaC | gaT | 1 | 1 | AY.26 | 0.000028 |
ORF1ab/nsp3 | 1075 | D1075D | gaC | gaT | 1 | 1 | AY.4.5 | 0.000107 |
ORF1ab/nsp3 | 1075 | D1075D | gaC | gaT | 1 | 1 | AY.46.4 | 0.000165 |
ORF1ab/nsp3 | 1075 | D1075D | gaC | gaT | 1 | 1 | AY.46.6 | 0.000072 |
ORF1ab/nsp3 | 1075 | D1075D | gaC | gaT | 1 | 1 | AY.53 | 0.000288 |
ORF1ab/nsp3 | 1075 | D1075D | gaC | gaT | 1 | 1 | AY.74 | 0.000116 |
ORF1ab/nsp3 | 1075 | D1075D | gaC | gaT | 1 | 1 | AY.8 | 0.000606 |
ORF1ab/nsp3 | 1075 | D1075D | gaC | gaT | 1 | 1 | AY.82 | 0.001357 |
ORF1ab/nsp3 | 1075 | D1075D | gaC | gaT | 1 | 1 | AY.85 | 0.000427 |
ORF1ab/nsp3 | 1075 | D1075D | gaC | gaT | 1 | 1 | AY.88 | 0.000884 |
ORF1ab/nsp3 | 1075 | D1075D | gaC | gaT | 1 | 1 | AY.98 | 0.000079 |
ORF1ab/nsp3 | 1075 | D1075D | gaC | gaT | 1 | 1 | B.1.1.161 | 0.003534 |
ORF1ab/nsp3 | 1075 | D1075D | gaC | gaT | 1 | 1 | B.1.1.176 | 0.000439 |
ORF1ab/nsp3 | 1075 | D1075D | gaC | gaT | 1 | 1 | B.1.1.214 | 0.000055 |
ORF1ab/nsp3 | 1075 | D1075D | gaC | gaT | 1 | 1 | B.1.1.216 | 0.00089 |
ORF1ab/nsp3 | 1075 | D1075D | gaC | gaT | 1 | 1 | B.1.1.237 | 0.005405 |
ORF1ab/nsp3 | 1075 | D1075D | gaC | gaT | 1 | 1 | B.1.1.284 | 0.000107 |
ORF1ab/nsp3 | 1075 | D1075D | gaC | gaT | 1 | 1 | B.1.1.307 | 0.002532 |
ORF1ab/nsp3 | 1075 | D1075D | gaC | gaT | 1 | 1 | B.1.1.409 | 0.002833 |
ORF1ab/nsp3 | 1075 | D1075D | gaC | gaT | 1 | 1 | B.1.1.448 | 0.002033 |
ORF1ab/nsp3 | 1075 | D1075D | gaC | gaT | 1 | 1 | B.1.1.521 | 0.005348 |
ORF1ab/nsp3 | 1075 | D1075D | gaC | gaT | 1 | 1 | B.1.120 | 0.007692 |
ORF1ab/nsp3 | 1075 | D1075D | gaC | gaT | 1 | 1 | B.1.234 | 0.000132 |
ORF1ab/nsp3 | 1075 | D1075D | gaC | gaT | 1 | 1 | B.1.280 | 0.007143 |
ORF1ab/nsp3 | 1075 | D1075D | gaC | gaT | 1 | 1 | B.1.36.7 | 0.004 |
ORF1ab/nsp3 | 1075 | D1075D | gaC | gaT | 1 | 1 | B.1.366 | 0.004878 |
ORF1ab/nsp3 | 1075 | D1075D | gaC | gaT | 1 | 1 | B.1.396 | 0.000706 |
ORF1ab/nsp3 | 1075 | D1075D | gaC | gaT | 1 | 1 | B.1.466.2 | 0.000391 |
ORF1ab/nsp3 | 1075 | D1075D | gaC | gaT | 1 | 1 | B.1.501 | 0.007353 |
ORF1ab/nsp3 | 1075 | D1075D | gaC | gaT | 1 | 1 | B.1.540 | 0.009709 |
ORF1ab/nsp3 | 1075 | D1075D | gaC | gaT | 1 | 1 | B.1.551 | 0.00129 |
ORF1ab/nsp3 | 1075 | D1075D | gaC | gaT | 1 | 1 | B.1.575 | 0.000303 |
ORF1ab/nsp3 | 1075 | D1075D | gaC | gaT | 1 | 1 | B.1.576 | 0.000907 |
ORF1ab/nsp3 | 1075 | D1075D | gaC | gaT | 1 | 1 | B.1.620 | 0.000946 |
ORF1ab/nsp3 | 1075 | D1075D | gaC | gaT | 1 | 1 | B.1.628 | 0.000352 |
ORF1ab/nsp3 | 1075 | D1075D | gaC | gaT | 1 | 1 | B.61 | 0.005747 |
ORF1ab/nsp3 | 1075 | D1075D | gaC | gaT | 1 | 1 | D.2 | 0.000075 |
ORF1ab/nsp3 | 1075 | D1075D | gaC | gaT | 1 | 1 | P.1.1 | 0.000318 |
ORF1ab/nsp3 | 1075 | D1075D | gaC | gaT | 1 | 1 | P.1.6 | 0.001946 |
ORF1ab/nsp3 | 1075 | D1075D | gaC | gaT | 1 | 1 | P.2 | 0.000187 |
CoV-GLUE is still in development. CoV-GLUE was originally developed as part of COG-UK by Josh Singer using the GLUE framework at the MRC-University of Glasgow Centre for Virus Research (CVR). In 2021 it was redeveloped by Richard Orton to scale to the millions of genome sequences available. We acknowledge support from the MRC (MC_UU_12014/12), WT (220977/Z/20/Z) and UKRI G2P (MR/W005611/1). Please contact Richard Orton with any queries: Richard.Orton@glasgow.ac.uk
|