CoV-GLUE | Mutations | Mutation

CoV-GLUE Mutation: ORF = ORF1ab/nsp3 : CodonNum = 1071

Details of the codons used for the mutation across all lineages (CodonProp is the proportion each codon is used for this AA mutation):

ORFCodonNumMutORF1abMutMutTypeRefCodonMutCodonAACountCodonCountCodonPropGenome Position
ORF1ab/nsp31071C1071YC1889YnonsyntGttAt2643264315930-5932
ORF1ab/nsp31071C1071CC1889CsyntgTtgC15915915930-5932
ORF1ab/nsp31071C1071FC1889FnonsyntGttTt1201190.9916675930-5932
ORF1ab/nsp31071C1071FC1889FnonsyntGTtTC12010.008333335930-5932
ORF1ab/nsp31071C1071RC1889RnonsynTgtCgt38370.9736845930-5932
ORF1ab/nsp31071C1071RC1889RnonsynTgTCgA3810.02631585930-5932
ORF1ab/nsp31071C1071SC1889SnonsynTgtAgt23150.6521745930-5932
ORF1ab/nsp31071C1071SC1889SnonsyntGttCt2380.3478265930-5932
ORF1ab/nsp31071C1071delC1889deldelTGT---212115930-5932
ORF1ab/nsp31071C1071del1C1889del1deltgTtg-12100.8333335930-5932
ORF1ab/nsp31071C1071del1C1889del1deltGtt-t1220.1666675930-5932
ORF1ab/nsp31071C1071XC1889XnonsyntgTtgA11100.9090915930-5932
ORF1ab/nsp31071C1071XC1889XnonsyntGTtAA1110.09090915930-5932
ORF1ab/nsp31071C1071del2C1889del2deltGTt--4415930-5932
ORF1ab/nsp31071C1071WC1889WnonsyntgTtgG3315930-5932
ORF1ab/nsp31071C1071GC1889GnonsynTgtGgt3315930-5932
ORF1ab/nsp31071C1071LC1889LnonsynTGtCTt2215930-5932
ORF1ab/nsp31071C1071IC1889InonsynTGtATt1115930-5932
ORF1ab/nsp31071C1071NC1889NnonsynTGtAAt1115930-5932

Details of the mutation no within lineages (LineageCodonProp is the proportion the codon is observed at, at this particular site, on each lineage):

ORFCodonNumMutRefCodonMutCodonCodonCountAACountLineageLineageCodonProp
ORF1ab/nsp31071C1071YtGttAt26432643All0.000506
ORF1ab/nsp31071C1071YtGttAt24162416AY.700.503753
ORF1ab/nsp31071C1071CtgTtgC159159All0.00003
ORF1ab/nsp31071C1071FtGttTt119120All0.000023
ORF1ab/nsp31071C1071FtGTtTC1120All0
ORF1ab/nsp31071C1071YtGttAt4747AY.440.000286
ORF1ab/nsp31071C1071RTgtCgt3738All0.000007
ORF1ab/nsp31071C1071RTgTCgA138All0
ORF1ab/nsp31071C1071CtgTtgC3232AY.1140.007395
ORF1ab/nsp31071C1071YtGttAt3232B.1.617.20.00012
ORF1ab/nsp31071C1071YtGttAt2929B.1.1.5190.001152
ORF1ab/nsp31071C1071CtgTtgC2727B.1.1.70.000024
ORF1ab/nsp31071C1071YtGttAt2525AY.260.000708
ORF1ab/nsp31071C1071STgtAgt1523All0.000003
ORF1ab/nsp31071C1071StGttCt823All0.000002
ORF1ab/nsp31071C1071FtGttTt2323AY.430.000102
ORF1ab/nsp31071C1071delTGT---2121All0.000004
ORF1ab/nsp31071C1071FtGttTt1919AY.4.20.000412
ORF1ab/nsp31071C1071CtgTtgC1414AY.1030.000087
ORF1ab/nsp31071C1071del1tgTtg-1012All0.000002
ORF1ab/nsp31071C1071del1tGtt-t212All0
ORF1ab/nsp31071C1071XtgTtgA1011All0.000002
ORF1ab/nsp31071C1071XtGTtAA111All0
ORF1ab/nsp31071C1071YtGttAt1111AY.40.000017
ORF1ab/nsp31071C1071YtGttAt1111B.1.1.70.00001
ORF1ab/nsp31071C1071YtGttAt1010B.1.1770.000132
ORF1ab/nsp31071C1071CtgTtgC1010B.1.5260.000235
ORF1ab/nsp31071C1071CtgTtgC99AY.200.00035
ORF1ab/nsp31071C1071CtgTtgC99AY.260.000255
ORF1ab/nsp31071C1071YtGttAt99B.1.20.000079
ORF1ab/nsp31071C1071FtGttTt88AY.50.000165
ORF1ab/nsp31071C1071RTgtCgt77AY.250.000042
ORF1ab/nsp31071C1071STgtAgt77B.1.1.70.000006
ORF1ab/nsp31071C1071RTgtCgt77B.1.1.70.000006
ORF1ab/nsp31071C1071FtGttTt67B.1.1.70.000005
ORF1ab/nsp31071C1071FtGTtTC17B.1.1.70.000001
ORF1ab/nsp31071C1071CtgTtgC66AY.40.000009
ORF1ab/nsp31071C1071FtGttTt66AY.40.000009
ORF1ab/nsp31071C1071del1tgTtg-66B.1.1.70.000005
ORF1ab/nsp31071C1071delTGT---66B.1.1.70.000005
ORF1ab/nsp31071C1071CtgTtgC66P.10.000095
ORF1ab/nsp31071C1071CtgTtgC55AY.46.60.000361
ORF1ab/nsp31071C1071FtGttTt55AY.98.10.000242
ORF1ab/nsp31071C1071CtgTtgC55B.1.20.000044
ORF1ab/nsp31071C1071FtGttTt55B.1.4290.000118
ORF1ab/nsp31071C1071del2tGTt--44All0.000001
ORF1ab/nsp31071C1071CtgTtgC44AY.50.000083
ORF1ab/nsp31071C1071RTgtCgt44B.10.000037
ORF1ab/nsp31071C1071FtGttTt44B.10.000037
ORF1ab/nsp31071C1071del2tGTt--44B.1.1.70.000004
ORF1ab/nsp31071C1071YtGttAt44B.1.2580.000266
ORF1ab/nsp31071C1071FtGttTt44B.1.617.20.000015
ORF1ab/nsp31071C1071RTgtCgt230.111111
ORF1ab/nsp31071C1071RTgTCgA130.055556
ORF1ab/nsp31071C1071GTgtGgt33All0.000001
ORF1ab/nsp31071C1071WtgTtgG33All0.000001
ORF1ab/nsp31071C1071CtgTtgC33AY.250.000018
ORF1ab/nsp31071C1071CtgTtgC33AY.290.000047
ORF1ab/nsp31071C1071RTgtCgt33AY.440.000018
ORF1ab/nsp31071C1071RTgtCgt33AY.940.001328
ORF1ab/nsp31071C1071CtgTtgC33B.10.000027
ORF1ab/nsp31071C1071YtGttAt33B.1.1.2220.000612
ORF1ab/nsp31071C1071FtGttTt33B.1.1770.00004
ORF1ab/nsp31071C1071FtGttTt33B.1.20.000026
ORF1ab/nsp31071C1071CtgTtgC33B.1.4270.000151
ORF1ab/nsp31071C1071STgtAgt33B.1.617.20.000011
ORF1ab/nsp31071C1071CtgTtgC33B.1.617.20.000011
ORF1ab/nsp31071C1071STgtAgt220.111111
ORF1ab/nsp31071C1071LTGtCTt22All0
ORF1ab/nsp31071C1071FtGttTt22AY.1000.000092
ORF1ab/nsp31071C1071FtGttTt22AY.1030.000012
ORF1ab/nsp31071C1071RTgtCgt22AY.1130.000285
ORF1ab/nsp31071C1071YtGttAt22AY.1160.000574
ORF1ab/nsp31071C1071CtgTtgC22AY.1160.000574
ORF1ab/nsp31071C1071YtGttAt22AY.20.000712
ORF1ab/nsp31071C1071FtGttTt22AY.250.000012
ORF1ab/nsp31071C1071YtGttAt22AY.390.000049
ORF1ab/nsp31071C1071YtGttAt22AY.39.10.000079
ORF1ab/nsp31071C1071delTGT---22AY.40.000003
ORF1ab/nsp31071C1071FtGttTt22AY.4.2.10.000298
ORF1ab/nsp31071C1071STgtAgt12AY.440.000006
ORF1ab/nsp31071C1071StGttCt12AY.440.000006
ORF1ab/nsp31071C1071YtGttAt22AY.460.000208
ORF1ab/nsp31071C1071CtgTtgC22AY.490.00639
ORF1ab/nsp31071C1071FtGttTt22AY.60.000082
ORF1ab/nsp31071C1071CtgTtgC22AY.60.000082
ORF1ab/nsp31071C1071FtGttTt22AY.610.00021
ORF1ab/nsp31071C1071XtgTtgA22AY.610.00021
ORF1ab/nsp31071C1071YtGttAt22AY.980.000158
ORF1ab/nsp31071C1071del1tgTtg-22AZ.20.001642
ORF1ab/nsp31071C1071YtGttAt22B.10.000018
ORF1ab/nsp31071C1071WtgTtgG22B.10.000018
ORF1ab/nsp31071C1071XtgTtgA22B.1.10.000036
ORF1ab/nsp31071C1071XtgTtgA22B.1.1.70.000002
ORF1ab/nsp31071C1071YtGttAt22B.1.3510.000059
ORF1ab/nsp31071C1071YtGttAt22B.1.3690.00057
ORF1ab/nsp31071C1071RTgtCgt22B.1.617.20.000008
ORF1ab/nsp31071C1071FtGttTt22D.20.00015
ORF1ab/nsp31071C1071FtGttTt110.055556
ORF1ab/nsp31071C1071ITGtATt110.055556
ORF1ab/nsp31071C1071XtgTtgA110.055556
ORF1ab/nsp31071C1071YtGttAt110.055556
ORF1ab/nsp31071C1071FtGttTt11A.23.10.000704
ORF1ab/nsp31071C1071NTGtAAt11All0
ORF1ab/nsp31071C1071ITGtATt11All0
ORF1ab/nsp31071C1071YtGttAt11AY.1020.000027
ORF1ab/nsp31071C1071YtGttAt11AY.1030.000006
ORF1ab/nsp31071C1071YtGttAt11AY.1040.001984
ORF1ab/nsp31071C1071YtGttAt11AY.1170.000085
ORF1ab/nsp31071C1071FtGttTt11AY.1170.000085
ORF1ab/nsp31071C1071CtgTtgC11AY.1180.000063
ORF1ab/nsp31071C1071YtGttAt11AY.1200.000037
ORF1ab/nsp31071C1071STgtAgt11AY.1210.000135
ORF1ab/nsp31071C1071YtGttAt11AY.140.000088
ORF1ab/nsp31071C1071FtGttTt11AY.230.00007
ORF1ab/nsp31071C1071XtgTtgA11AY.230.00007
ORF1ab/nsp31071C1071FtGttTt11AY.260.000028
ORF1ab/nsp31071C1071FtGttTt11AY.30.00001
ORF1ab/nsp31071C1071CtgTtgC11AY.30.00001
ORF1ab/nsp31071C1071YtGttAt11AY.30.00001
ORF1ab/nsp31071C1071FtGttTt11AY.3.10.000085
ORF1ab/nsp31071C1071FtGttTt11AY.340.000097
ORF1ab/nsp31071C1071delTGT---11AY.360.000148
ORF1ab/nsp31071C1071FtGttTt11AY.39.20.001541
ORF1ab/nsp31071C1071YtGttAt11AY.4.2.10.000149
ORF1ab/nsp31071C1071delTGT---11AY.4.30.000842
ORF1ab/nsp31071C1071StGttCt11AY.430.000004
ORF1ab/nsp31071C1071CtgTtgC11AY.430.000004
ORF1ab/nsp31071C1071YtGttAt11AY.430.000004
ORF1ab/nsp31071C1071NTGtAAt11AY.440.000006
ORF1ab/nsp31071C1071WtgTtgG11AY.440.000006
ORF1ab/nsp31071C1071GTgtGgt11AY.450.000122
ORF1ab/nsp31071C1071YtGttAt11AY.46.60.000072
ORF1ab/nsp31071C1071YtGttAt11AY.470.000031
ORF1ab/nsp31071C1071YtGttAt11AY.530.000288
ORF1ab/nsp31071C1071YtGttAt11AY.540.000095
ORF1ab/nsp31071C1071CtgTtgC11AY.610.000105
ORF1ab/nsp31071C1071delTGT---11AY.610.000105
ORF1ab/nsp31071C1071RTgtCgt11AY.650.000533
ORF1ab/nsp31071C1071delTGT---11AY.670.000464
ORF1ab/nsp31071C1071YtGttAt11AY.670.000464
ORF1ab/nsp31071C1071CtgTtgC11AY.670.000464
ORF1ab/nsp31071C1071CtgTtgC11AY.710.000475
ORF1ab/nsp31071C1071delTGT---11AY.750.000056
ORF1ab/nsp31071C1071YtGttAt11AY.770.001127
ORF1ab/nsp31071C1071delTGT---11AY.850.000427
ORF1ab/nsp31071C1071FtGttTt11AY.90.000068
ORF1ab/nsp31071C1071XtgTtgA11AY.9.20.000037
ORF1ab/nsp31071C1071YtGttAt11AY.9.20.000037
ORF1ab/nsp31071C1071RTgtCgt11AY.98.10.000048
ORF1ab/nsp31071C1071FtGttTt11AY.99.20.000092
ORF1ab/nsp31071C1071CtgTtgC11B0.000128
ORF1ab/nsp31071C1071StGttCt11B0.000128
ORF1ab/nsp31071C1071XtGTtAA11B.10.000009
ORF1ab/nsp31071C1071delTGT---11B.10.000009
ORF1ab/nsp31071C1071YtGttAt11B.1.10.000018
ORF1ab/nsp31071C1071FtGttTt11B.1.10.000018
ORF1ab/nsp31071C1071RTgtCgt11B.1.10.000018
ORF1ab/nsp31071C1071StGttCt11B.1.10.000018
ORF1ab/nsp31071C1071RTgtCgt11B.1.1.10.000327
ORF1ab/nsp31071C1071StGttCt11B.1.1.2790.001121
ORF1ab/nsp31071C1071YtGttAt11B.1.1.3540.004386
ORF1ab/nsp31071C1071RTgtCgt11B.1.1.3720.000689
ORF1ab/nsp31071C1071XtgTtgA11B.1.1.390.00051
ORF1ab/nsp31071C1071YtGttAt11B.1.1.390.00051
ORF1ab/nsp31071C1071STgtAgt11B.1.1.5190.00004
ORF1ab/nsp31071C1071del1tGtt-t11B.1.1130.015625
ORF1ab/nsp31071C1071YtGttAt11B.1.160.160.000929
ORF1ab/nsp31071C1071YtGttAt11B.1.160.80.001289
ORF1ab/nsp31071C1071del1tgTtg-11B.1.1770.000013
ORF1ab/nsp31071C1071YtGttAt11B.1.177.210.000076
ORF1ab/nsp31071C1071delTGT---11B.1.177.320.00135
ORF1ab/nsp31071C1071FtGttTt11B.1.177.320.00135
ORF1ab/nsp31071C1071FtGttTt11B.1.177.820.000477
ORF1ab/nsp31071C1071YtGttAt11B.1.177.830.001481
ORF1ab/nsp31071C1071YtGttAt11B.1.2400.000216
ORF1ab/nsp31071C1071StGttCt11B.1.2580.000067
ORF1ab/nsp31071C1071delTGT---11B.1.3510.00003
ORF1ab/nsp31071C1071FtGttTt11B.1.3510.00003
ORF1ab/nsp31071C1071delTGT---11B.1.360.000146
ORF1ab/nsp31071C1071YtGttAt11B.1.360.000146
ORF1ab/nsp31071C1071RTgtCgt11B.1.36.360.000602
ORF1ab/nsp31071C1071YtGttAt11B.1.4090.000781
ORF1ab/nsp31071C1071YtGttAt11B.1.4290.000024
ORF1ab/nsp31071C1071CtgTtgC11B.1.4290.000024
ORF1ab/nsp31071C1071GTgtGgt11B.1.5760.000907
ORF1ab/nsp31071C1071CtgTtgC11B.1.5960.000087
ORF1ab/nsp31071C1071FtGttTt11B.1.5960.000087
ORF1ab/nsp31071C1071LTGtCTt11B.1.617.10.000129
ORF1ab/nsp31071C1071LTGtCTt11B.1.617.20.000004
ORF1ab/nsp31071C1071del1tgTtg-11B.1.617.20.000004
ORF1ab/nsp31071C1071delTGT---11B.1.617.20.000004
ORF1ab/nsp31071C1071FtGttTt11B.1.6230.000536
ORF1ab/nsp31071C1071delTGT---11B.150.017544
ORF1ab/nsp31071C1071StGttCt11C.350.000774
ORF1ab/nsp31071C1071FtGttTt11C.60.037037
ORF1ab/nsp31071C1071GTgtGgt11D.20.000075
ORF1ab/nsp31071C1071del1tGtt-t11D.20.000075
ORF1ab/nsp31071C1071StGttCt11D.20.000075
ORF1ab/nsp31071C1071delTGT---11P.10.000016
ORF1ab/nsp31071C1071RTgtCgt11P.1.140.000048
ORF1ab/nsp31071C1071FtGttTt11P.1.160.000374
ORF1ab/nsp31071C1071CtgTtgC11P.1.170.000162
ORF1ab/nsp31071C1071CtgTtgC11P.1.70.000319