CoV-GLUE | Mutations | Mutation
Details of the codons used for the mutation across all lineages (CodonProp is the proportion each codon is used for this AA mutation):
ORF | CodonNum | Mut | ORF1abMut | MutType | RefCodon | MutCodon | AACount | CodonCount | CodonProp | Genome Position |
ORF1ab/nsp3 | 107 | Y107Y | Y925Y | syn | taC | taT | 2644 | 2644 | 1 | 3038-3040 |
ORF1ab/nsp3 | 107 | Y107H | Y925H | nonsyn | Tac | Cac | 177 | 177 | 1 | 3038-3040 |
ORF1ab/nsp3 | 107 | Y107C | Y925C | nonsyn | tAc | tGc | 132 | 131 | 0.992424 | 3038-3040 |
ORF1ab/nsp3 | 107 | Y107C | Y925C | nonsyn | tAC | tGT | 132 | 1 | 0.00757576 | 3038-3040 |
ORF1ab/nsp3 | 107 | Y107N | Y925N | nonsyn | Tac | Aac | 81 | 80 | 0.987654 | 3038-3040 |
ORF1ab/nsp3 | 107 | Y107N | Y925N | nonsyn | TaC | AaT | 81 | 1 | 0.0123457 | 3038-3040 |
ORF1ab/nsp3 | 107 | Y107del | Y925del | del | TAC | --- | 41 | 41 | 1 | 3038-3040 |
ORF1ab/nsp3 | 107 | Y107X | Y925X | nonsyn | taC | taA | 19 | 18 | 0.947368 | 3038-3040 |
ORF1ab/nsp3 | 107 | Y107X | Y925X | nonsyn | taC | taG | 19 | 1 | 0.0526316 | 3038-3040 |
ORF1ab/nsp3 | 107 | Y107del1 | Y925del1 | del | taC | ta- | 11 | 8 | 0.727273 | 3038-3040 |
ORF1ab/nsp3 | 107 | Y107del1 | Y925del1 | del | tAc | t-c | 11 | 1 | 0.0909091 | 3038-3040 |
ORF1ab/nsp3 | 107 | Y107del1 | Y925del1 | del | Tac | -ac | 11 | 1 | 0.0909091 | 3038-3040 |
ORF1ab/nsp3 | 107 | Y107del1 | Y925del1 | del | TAC | CG- | 11 | 1 | 0.0909091 | 3038-3040 |
ORF1ab/nsp3 | 107 | Y107del2 | Y925del2 | del | TAC | --A | 9 | 6 | 0.666667 | 3038-3040 |
ORF1ab/nsp3 | 107 | Y107del2 | Y925del2 | del | TAc | --c | 9 | 3 | 0.333333 | 3038-3040 |
ORF1ab/nsp3 | 107 | Y107L | Y925L | nonsyn | tAC | tTA | 5 | 5 | 1 | 3038-3040 |
ORF1ab/nsp3 | 107 | Y107D | Y925D | nonsyn | Tac | Gac | 5 | 5 | 1 | 3038-3040 |
ORF1ab/nsp3 | 107 | Y107F | Y925F | nonsyn | tAc | tTc | 4 | 4 | 1 | 3038-3040 |
ORF1ab/nsp3 | 107 | Y107T | Y925T | nonsyn | TAc | ACc | 2 | 2 | 1 | 3038-3040 |
ORF1ab/nsp3 | 107 | Y107S | Y925S | nonsyn | tAc | tCc | 1 | 1 | 1 | 3038-3040 |
ORF1ab/nsp3 | 107 | Y107P | Y925P | nonsyn | TAC | CCT | 1 | 1 | 1 | 3038-3040 |
Details of the mutation no within lineages (LineageCodonProp is the proportion the codon is observed at, at this particular site, on each lineage):
ORF | CodonNum | Mut | RefCodon | MutCodon | CodonCount | AACount | Lineage | LineageCodonProp |
ORF1ab/nsp3 | 107 | Y107Y | taC | taT | 2644 | 2644 | All | 0.000506 |
ORF1ab/nsp3 | 107 | Y107Y | taC | taT | 888 | 888 | B.1.438.1 | 0.095248 |
ORF1ab/nsp3 | 107 | Y107Y | taC | taT | 519 | 519 | AY.25 | 0.003122 |
ORF1ab/nsp3 | 107 | Y107Y | taC | taT | 315 | 315 | B.1.1.7 | 0.000282 |
ORF1ab/nsp3 | 107 | Y107H | Tac | Cac | 177 | 177 | All | 0.000034 |
ORF1ab/nsp3 | 107 | Y107Y | taC | taT | 172 | 172 | B.1.2 | 0.001515 |
ORF1ab/nsp3 | 107 | Y107C | tAc | tGc | 131 | 132 | All | 0.000025 |
ORF1ab/nsp3 | 107 | Y107C | tAC | tGT | 1 | 132 | All | 0 |
ORF1ab/nsp3 | 107 | Y107Y | taC | taT | 93 | 93 | B.1.617.2 | 0.00035 |
ORF1ab/nsp3 | 107 | Y107N | Tac | Aac | 80 | 81 | All | 0.000015 |
ORF1ab/nsp3 | 107 | Y107N | TaC | AaT | 1 | 81 | All | 0 |
ORF1ab/nsp3 | 107 | Y107Y | taC | taT | 75 | 75 | B.1.629 | 1 |
ORF1ab/nsp3 | 107 | Y107H | Tac | Cac | 73 | 73 | B.1.1.7 | 0.000065 |
ORF1ab/nsp3 | 107 | Y107Y | taC | taT | 54 | 54 | AY.26 | 0.001529 |
ORF1ab/nsp3 | 107 | Y107Y | taC | taT | 51 | 51 | AY.4 | 0.000079 |
ORF1ab/nsp3 | 107 | Y107Y | taC | taT | 48 | 48 | AY.44 | 0.000292 |
ORF1ab/nsp3 | 107 | Y107del | TAC | --- | 41 | 41 | All | 0.000008 |
ORF1ab/nsp3 | 107 | Y107C | tAc | tGc | 41 | 41 | B.1.1.519 | 0.001628 |
ORF1ab/nsp3 | 107 | Y107Y | taC | taT | 28 | 28 | P.1 | 0.000441 |
ORF1ab/nsp3 | 107 | Y107N | Tac | Aac | 27 | 27 | AY.16 | 0.010251 |
ORF1ab/nsp3 | 107 | Y107Y | taC | taT | 25 | 25 | B.1.177.81 | 0.004733 |
ORF1ab/nsp3 | 107 | Y107H | Tac | Cac | 23 | 23 | AY.4 | 0.000036 |
ORF1ab/nsp3 | 107 | Y107N | Tac | Aac | 22 | 22 | AP.1 | 0.033033 |
ORF1ab/nsp3 | 107 | Y107X | taC | taA | 18 | 19 | All | 0.000003 |
ORF1ab/nsp3 | 107 | Y107X | taC | taG | 1 | 19 | All | 0 |
ORF1ab/nsp3 | 107 | Y107Y | taC | taT | 19 | 19 | B.1 | 0.000174 |
ORF1ab/nsp3 | 107 | Y107Y | taC | taT | 17 | 17 | AY.43 | 0.000075 |
ORF1ab/nsp3 | 107 | Y107C | tAc | tGc | 13 | 13 | AY.44 | 0.000079 |
ORF1ab/nsp3 | 107 | Y107H | Tac | Cac | 13 | 13 | B.1.1.416 | 0.011765 |
ORF1ab/nsp3 | 107 | Y107H | Tac | Cac | 13 | 13 | B.1.617.2 | 0.000049 |
ORF1ab/nsp3 | 107 | Y107C | tAc | tGc | 12 | 12 | AY.28 | 0.022684 |
ORF1ab/nsp3 | 107 | Y107del1 | taC | ta- | 8 | 11 | All | 0.000002 |
ORF1ab/nsp3 | 107 | Y107del1 | Tac | -ac | 1 | 11 | All | 0 |
ORF1ab/nsp3 | 107 | Y107del1 | tAc | t-c | 1 | 11 | All | 0 |
ORF1ab/nsp3 | 107 | Y107del1 | TAC | CG- | 1 | 11 | All | 0 |
ORF1ab/nsp3 | 107 | Y107Y | taC | taT | 11 | 11 | AY.103 | 0.000068 |
ORF1ab/nsp3 | 107 | Y107Y | taC | taT | 11 | 11 | B.1.429 | 0.000259 |
ORF1ab/nsp3 | 107 | Y107Y | taC | taT | 10 | 10 | AY.29.1 | 0.002205 |
ORF1ab/nsp3 | 107 | Y107C | tAc | tGc | 10 | 10 | AY.4 | 0.000016 |
ORF1ab/nsp3 | 107 | Y107N | Tac | Aac | 10 | 10 | B.1.1.7 | 0.000009 |
ORF1ab/nsp3 | 107 | Y107Y | taC | taT | 10 | 10 | B.1.177 | 0.000132 |
ORF1ab/nsp3 | 107 | Y107del2 | TAC | --A | 6 | 9 | All | 0.000001 |
ORF1ab/nsp3 | 107 | Y107del2 | TAc | --c | 3 | 9 | All | 0.000001 |
ORF1ab/nsp3 | 107 | Y107Y | taC | taT | 9 | 9 | AY.4.2 | 0.000195 |
ORF1ab/nsp3 | 107 | Y107Y | taC | taT | 8 | 8 | AY.46.6 | 0.000578 |
ORF1ab/nsp3 | 107 | Y107Y | taC | taT | 8 | 8 | B.1.351 | 0.000238 |
ORF1ab/nsp3 | 107 | Y107Y | taC | taT | 8 | 8 | B.1.400 | 0.003432 |
ORF1ab/nsp3 | 107 | Y107C | tAc | tGc | 8 | 8 | B.4 | 0.01766 |
ORF1ab/nsp3 | 107 | Y107Y | taC | taT | 7 | 7 | B.1.1 | 0.000127 |
ORF1ab/nsp3 | 107 | Y107Y | taC | taT | 6 | 6 | AY.23 | 0.000418 |
ORF1ab/nsp3 | 107 | Y107Y | taC | taT | 6 | 6 | AY.29 | 0.000095 |
ORF1ab/nsp3 | 107 | Y107C | tAc | tGc | 6 | 6 | AY.43 | 0.000027 |
ORF1ab/nsp3 | 107 | Y107Y | taC | taT | 6 | 6 | B.1.1.63 | 0.002315 |
ORF1ab/nsp3 | 107 | Y107X | taC | taA | 6 | 6 | B.1.1.7 | 0.000005 |
ORF1ab/nsp3 | 107 | Y107Y | taC | taT | 6 | 6 | B.1.160 | 0.000187 |
ORF1ab/nsp3 | 107 | Y107Y | taC | taT | 6 | 6 | B.1.258 | 0.000399 |
ORF1ab/nsp3 | 107 | Y107Y | taC | taT | 6 | 6 | B.1.369 | 0.001711 |
ORF1ab/nsp3 | 107 | Y107Y | taC | taT | 6 | 6 | B.1.425 | 0.017964 |
ORF1ab/nsp3 | 107 | Y107N | Tac | Aac | 6 | 6 | B.1.540 | 0.058252 |
ORF1ab/nsp3 | 107 | Y107D | Tac | Gac | 5 | 5 | All | 0.000001 |
ORF1ab/nsp3 | 107 | Y107L | tAC | tTA | 5 | 5 | All | 0.000001 |
ORF1ab/nsp3 | 107 | Y107Y | taC | taT | 5 | 5 | AY.39 | 0.000124 |
ORF1ab/nsp3 | 107 | Y107del | TAC | --- | 5 | 5 | B.1 | 0.000046 |
ORF1ab/nsp3 | 107 | Y107H | Tac | Cac | 5 | 5 | B.1 | 0.000046 |
ORF1ab/nsp3 | 107 | Y107Y | taC | taT | 5 | 5 | B.1.1.326 | 0.008803 |
ORF1ab/nsp3 | 107 | Y107Y | taC | taT | 5 | 5 | B.1.221 | 0.000355 |
ORF1ab/nsp3 | 107 | Y107Y | taC | taT | 5 | 5 | B.1.243 | 0.000348 |
ORF1ab/nsp3 | 107 | Y107Y | taC | taT | 5 | 5 | B.1.258.17 | 0.00052 |
ORF1ab/nsp3 | 107 | Y107Y | taC | taT | 5 | 5 | B.1.36 | 0.00073 |
ORF1ab/nsp3 | 107 | Y107F | tAc | tTc | 4 | 4 | All | 0.000001 |
ORF1ab/nsp3 | 107 | Y107Y | taC | taT | 4 | 4 | AY.102 | 0.000106 |
ORF1ab/nsp3 | 107 | Y107C | tAc | tGc | 4 | 4 | AY.32 | 0.00213 |
ORF1ab/nsp3 | 107 | Y107Y | taC | taT | 4 | 4 | AY.42 | 0.000161 |
ORF1ab/nsp3 | 107 | Y107Y | taC | taT | 4 | 4 | AY.47 | 0.000124 |
ORF1ab/nsp3 | 107 | Y107Y | taC | taT | 4 | 4 | AY.5 | 0.000083 |
ORF1ab/nsp3 | 107 | Y107Y | taC | taT | 4 | 4 | AY.7.2 | 0.002237 |
ORF1ab/nsp3 | 107 | Y107Y | taC | taT | 4 | 4 | AY.84 | 0.00175 |
ORF1ab/nsp3 | 107 | Y107Y | taC | taT | 4 | 4 | AY.9.1 | 0.000335 |
ORF1ab/nsp3 | 107 | Y107Y | taC | taT | 4 | 4 | AY.9.2 | 0.000147 |
ORF1ab/nsp3 | 107 | Y107Y | taC | taT | 4 | 4 | AY.98.1 | 0.000194 |
ORF1ab/nsp3 | 107 | Y107C | tAc | tGc | 4 | 4 | B.1.1.7 | 0.000004 |
ORF1ab/nsp3 | 107 | Y107C | tAc | tGc | 4 | 4 | B.1.177 | 0.000053 |
ORF1ab/nsp3 | 107 | Y107H | Tac | Cac | 4 | 4 | B.1.497 | 0.001259 |
ORF1ab/nsp3 | 107 | Y107H | Tac | Cac | 4 | 4 | B.1.526 | 0.000094 |
ORF1ab/nsp3 | 107 | Y107Y | taC | taT | 4 | 4 | B.1.575.1 | 0.009756 |
ORF1ab/nsp3 | 107 | Y107H | Tac | Cac | 4 | 4 | B.1.637 | 0.000292 |
ORF1ab/nsp3 | 107 | Y107Y | taC | taT | 4 | 4 | B.4 | 0.00883 |
ORF1ab/nsp3 | 107 | Y107C | tAc | tGc | 4 | 4 | P.1 | 0.000063 |
ORF1ab/nsp3 | 107 | Y107Y | taC | taT | 4 | 4 | P.1.12 | 0.001936 |
ORF1ab/nsp3 | 107 | Y107Y | taC | taT | 3 | 3 | A.2.5 | 0.001497 |
ORF1ab/nsp3 | 107 | Y107Y | taC | taT | 3 | 3 | AY.100 | 0.000138 |
ORF1ab/nsp3 | 107 | Y107C | tAc | tGc | 3 | 3 | AY.103 | 0.000019 |
ORF1ab/nsp3 | 107 | Y107Y | taC | taT | 3 | 3 | AY.118 | 0.000188 |
ORF1ab/nsp3 | 107 | Y107Y | taC | taT | 3 | 3 | AY.120 | 0.000112 |
ORF1ab/nsp3 | 107 | Y107Y | taC | taT | 3 | 3 | AY.3 | 0.00003 |
ORF1ab/nsp3 | 107 | Y107H | Tac | Cac | 3 | 3 | AY.39.1 | 0.000119 |
ORF1ab/nsp3 | 107 | Y107Y | taC | taT | 3 | 3 | AY.95 | 0.002283 |
ORF1ab/nsp3 | 107 | Y107N | Tac | Aac | 3 | 3 | B.1 | 0.000027 |
ORF1ab/nsp3 | 107 | Y107Y | taC | taT | 3 | 3 | B.1.1.1 | 0.00098 |
ORF1ab/nsp3 | 107 | Y107Y | taC | taT | 3 | 3 | B.1.1.28 | 0.000934 |
ORF1ab/nsp3 | 107 | Y107del | TAC | --- | 3 | 3 | B.1.1.33 | 0.001263 |
ORF1ab/nsp3 | 107 | Y107Y | taC | taT | 3 | 3 | B.1.1.397 | 0.006757 |
ORF1ab/nsp3 | 107 | Y107del | TAC | --- | 3 | 3 | B.1.1.7 | 0.000003 |
ORF1ab/nsp3 | 107 | Y107C | tAc | tGc | 3 | 3 | B.1.2 | 0.000026 |
ORF1ab/nsp3 | 107 | Y107del | TAC | --- | 3 | 3 | B.1.2 | 0.000026 |
ORF1ab/nsp3 | 107 | Y107H | Tac | Cac | 3 | 3 | B.1.2 | 0.000026 |
ORF1ab/nsp3 | 107 | Y107H | Tac | Cac | 3 | 3 | B.1.234 | 0.000396 |
ORF1ab/nsp3 | 107 | Y107Y | taC | taT | 3 | 3 | B.1.36.29 | 0.001552 |
ORF1ab/nsp3 | 107 | Y107Y | taC | taT | 3 | 3 | B.1.438 | 0.019608 |
ORF1ab/nsp3 | 107 | Y107Y | taC | taT | 3 | 3 | B.1.526 | 0.000071 |
ORF1ab/nsp3 | 107 | Y107F | tAc | tTc | 3 | 3 | B.1.617.2 | 0.000011 |
ORF1ab/nsp3 | 107 | Y107C | tAc | tGc | 3 | 3 | B.1.625 | 0.007059 |
ORF1ab/nsp3 | 107 | Y107Y | taC | taT | 3 | 3 | R.1 | 0.00027 |
ORF1ab/nsp3 | 107 | Y107Y | taC | taT | 2 | 2 | 0.111111 | |
ORF1ab/nsp3 | 107 | Y107del | TAC | --- | 2 | 2 | 0.111111 | |
ORF1ab/nsp3 | 107 | Y107Y | taC | taT | 2 | 2 | A.1 | 0.000564 |
ORF1ab/nsp3 | 107 | Y107T | TAc | ACc | 2 | 2 | All | 0 |
ORF1ab/nsp3 | 107 | Y107X | taC | taA | 2 | 2 | AY.102 | 0.000053 |
ORF1ab/nsp3 | 107 | Y107C | tAc | tGc | 2 | 2 | AY.102 | 0.000053 |
ORF1ab/nsp3 | 107 | Y107Y | taC | taT | 2 | 2 | AY.110 | 0.000225 |
ORF1ab/nsp3 | 107 | Y107Y | taC | taT | 2 | 2 | AY.116 | 0.000574 |
ORF1ab/nsp3 | 107 | Y107Y | taC | taT | 2 | 2 | AY.117 | 0.000169 |
ORF1ab/nsp3 | 107 | Y107Y | taC | taT | 2 | 2 | AY.16.1 | 0.00094 |
ORF1ab/nsp3 | 107 | Y107N | Tac | Aac | 2 | 2 | AY.18 | 0.020202 |
ORF1ab/nsp3 | 107 | Y107C | tAc | tGc | 2 | 2 | AY.25 | 0.000012 |
ORF1ab/nsp3 | 107 | Y107H | Tac | Cac | 2 | 2 | AY.25 | 0.000012 |
ORF1ab/nsp3 | 107 | Y107Y | taC | taT | 2 | 2 | AY.27 | 0.000129 |
ORF1ab/nsp3 | 107 | Y107Y | taC | taT | 2 | 2 | AY.30 | 0.000791 |
ORF1ab/nsp3 | 107 | Y107Y | taC | taT | 2 | 2 | AY.32 | 0.001065 |
ORF1ab/nsp3 | 107 | Y107H | Tac | Cac | 2 | 2 | AY.43 | 0.000009 |
ORF1ab/nsp3 | 107 | Y107L | tAC | tTA | 2 | 2 | AY.44 | 0.000012 |
ORF1ab/nsp3 | 107 | Y107del1 | taC | ta- | 2 | 2 | AY.44 | 0.000012 |
ORF1ab/nsp3 | 107 | Y107H | Tac | Cac | 2 | 2 | AY.44 | 0.000012 |
ORF1ab/nsp3 | 107 | Y107Y | taC | taT | 2 | 2 | AY.45 | 0.000243 |
ORF1ab/nsp3 | 107 | Y107C | tAc | tGc | 2 | 2 | AY.47 | 0.000062 |
ORF1ab/nsp3 | 107 | Y107H | Tac | Cac | 2 | 2 | AY.61 | 0.00021 |
ORF1ab/nsp3 | 107 | Y107Y | taC | taT | 2 | 2 | AY.68 | 0.000547 |
ORF1ab/nsp3 | 107 | Y107Y | taC | taT | 2 | 2 | AY.99.2 | 0.000184 |
ORF1ab/nsp3 | 107 | Y107del | TAC | --- | 2 | 2 | B.1.1 | 0.000036 |
ORF1ab/nsp3 | 107 | Y107Y | taC | taT | 2 | 2 | B.1.1.153 | 0.002191 |
ORF1ab/nsp3 | 107 | Y107del | TAC | --- | 2 | 2 | B.1.1.348 | 0.001592 |
ORF1ab/nsp3 | 107 | Y107H | Tac | Cac | 2 | 2 | B.1.1.37 | 0.000386 |
ORF1ab/nsp3 | 107 | Y107N | Tac | Aac | 2 | 2 | B.1.1.519 | 0.000079 |
ORF1ab/nsp3 | 107 | Y107Y | taC | taT | 2 | 2 | B.1.1.519 | 0.000079 |
ORF1ab/nsp3 | 107 | Y107del2 | TAc | --c | 1 | 2 | B.1.1.7 | 0.000001 |
ORF1ab/nsp3 | 107 | Y107del2 | TAC | --A | 1 | 2 | B.1.1.7 | 0.000001 |
ORF1ab/nsp3 | 107 | Y107Y | taC | taT | 2 | 2 | B.1.177.44 | 0.001038 |
ORF1ab/nsp3 | 107 | Y107del1 | taC | ta- | 2 | 2 | B.1.2 | 0.000018 |
ORF1ab/nsp3 | 107 | Y107Y | taC | taT | 2 | 2 | B.1.36.8 | 0.002 |
ORF1ab/nsp3 | 107 | Y107Y | taC | taT | 2 | 2 | B.1.427 | 0.000101 |
ORF1ab/nsp3 | 107 | Y107C | tAc | tGc | 2 | 2 | B.1.617.2 | 0.000008 |
ORF1ab/nsp3 | 107 | Y107X | taC | taA | 2 | 2 | B.1.617.2 | 0.000008 |
ORF1ab/nsp3 | 107 | Y107del1 | taC | ta- | 2 | 2 | B.1.627 | 0.00404 |
ORF1ab/nsp3 | 107 | Y107Y | taC | taT | 2 | 2 | B.23 | 0.005848 |
ORF1ab/nsp3 | 107 | Y107Y | taC | taT | 2 | 2 | B.40 | 0.000729 |
ORF1ab/nsp3 | 107 | Y107N | Tac | Aac | 2 | 2 | B.40 | 0.000729 |
ORF1ab/nsp3 | 107 | Y107Y | taC | taT | 2 | 2 | D.2 | 0.00015 |
ORF1ab/nsp3 | 107 | Y107del | TAC | --- | 2 | 2 | N.6 | 0.014184 |
ORF1ab/nsp3 | 107 | Y107del | TAC | --- | 2 | 2 | P.1 | 0.000032 |
ORF1ab/nsp3 | 107 | Y107Y | taC | taT | 2 | 2 | P.2 | 0.000373 |
ORF1ab/nsp3 | 107 | Y107Y | taC | taT | 2 | 2 | W.1 | 0.017391 |
ORF1ab/nsp3 | 107 | Y107X | taC | taA | 1 | 1 | 0.055556 | |
ORF1ab/nsp3 | 107 | Y107S | tAc | tCc | 1 | 1 | All | 0 |
ORF1ab/nsp3 | 107 | Y107P | TAC | CCT | 1 | 1 | All | 0 |
ORF1ab/nsp3 | 107 | Y107C | tAC | tGT | 1 | 1 | AY.100 | 0.000046 |
ORF1ab/nsp3 | 107 | Y107D | Tac | Gac | 1 | 1 | AY.102 | 0.000027 |
ORF1ab/nsp3 | 107 | Y107L | tAC | tTA | 1 | 1 | AY.103 | 0.000006 |
ORF1ab/nsp3 | 107 | Y107H | Tac | Cac | 1 | 1 | AY.103 | 0.000006 |
ORF1ab/nsp3 | 107 | Y107N | Tac | Aac | 1 | 1 | AY.103 | 0.000006 |
ORF1ab/nsp3 | 107 | Y107del2 | TAC | --A | 1 | 1 | AY.103 | 0.000006 |
ORF1ab/nsp3 | 107 | Y107Y | taC | taT | 1 | 1 | AY.113 | 0.000142 |
ORF1ab/nsp3 | 107 | Y107del | TAC | --- | 1 | 1 | AY.113 | 0.000142 |
ORF1ab/nsp3 | 107 | Y107H | Tac | Cac | 1 | 1 | AY.118 | 0.000063 |
ORF1ab/nsp3 | 107 | Y107H | Tac | Cac | 1 | 1 | AY.119 | 0.000035 |
ORF1ab/nsp3 | 107 | Y107Y | taC | taT | 1 | 1 | AY.119 | 0.000035 |
ORF1ab/nsp3 | 107 | Y107Y | taC | taT | 1 | 1 | AY.12 | 0.000316 |
ORF1ab/nsp3 | 107 | Y107H | Tac | Cac | 1 | 1 | AY.120 | 0.000037 |
ORF1ab/nsp3 | 107 | Y107Y | taC | taT | 1 | 1 | AY.120.1 | 0.000321 |
ORF1ab/nsp3 | 107 | Y107H | Tac | Cac | 1 | 1 | AY.13 | 0.000161 |
ORF1ab/nsp3 | 107 | Y107del1 | taC | ta- | 1 | 1 | AY.14 | 0.000088 |
ORF1ab/nsp3 | 107 | Y107del | TAC | --- | 1 | 1 | AY.2 | 0.000356 |
ORF1ab/nsp3 | 107 | Y107Y | taC | taT | 1 | 1 | AY.20 | 0.000039 |
ORF1ab/nsp3 | 107 | Y107del | TAC | --- | 1 | 1 | AY.25 | 0.000006 |
ORF1ab/nsp3 | 107 | Y107del2 | TAC | --A | 1 | 1 | AY.25 | 0.000006 |
ORF1ab/nsp3 | 107 | Y107del | TAC | --- | 1 | 1 | AY.26 | 0.000028 |
ORF1ab/nsp3 | 107 | Y107L | tAC | tTA | 1 | 1 | AY.26 | 0.000028 |
ORF1ab/nsp3 | 107 | Y107C | tAc | tGc | 1 | 1 | AY.3 | 0.00001 |
ORF1ab/nsp3 | 107 | Y107X | taC | taA | 1 | 1 | AY.3 | 0.00001 |
ORF1ab/nsp3 | 107 | Y107Y | taC | taT | 1 | 1 | AY.3.1 | 0.000085 |
ORF1ab/nsp3 | 107 | Y107del1 | TAC | CG- | 1 | 1 | AY.30 | 0.000396 |
ORF1ab/nsp3 | 107 | Y107Y | taC | taT | 1 | 1 | AY.34.1 | 0.00051 |
ORF1ab/nsp3 | 107 | Y107Y | taC | taT | 1 | 1 | AY.35 | 0.000233 |
ORF1ab/nsp3 | 107 | Y107Y | taC | taT | 1 | 1 | AY.36 | 0.000148 |
ORF1ab/nsp3 | 107 | Y107C | tAc | tGc | 1 | 1 | AY.37 | 0.000316 |
ORF1ab/nsp3 | 107 | Y107Y | taC | taT | 1 | 1 | AY.39.1.1 | 0.000725 |
ORF1ab/nsp3 | 107 | Y107N | Tac | Aac | 1 | 1 | AY.4 | 0.000002 |
ORF1ab/nsp3 | 107 | Y107del | TAC | --- | 1 | 1 | AY.42 | 0.00004 |
ORF1ab/nsp3 | 107 | Y107X | taC | taA | 1 | 1 | AY.43 | 0.000004 |
ORF1ab/nsp3 | 107 | Y107del | TAC | --- | 1 | 1 | AY.43 | 0.000004 |
ORF1ab/nsp3 | 107 | Y107del2 | TAC | --A | 1 | 1 | AY.44 | 0.000006 |
ORF1ab/nsp3 | 107 | Y107T | TAc | ACc | 1 | 1 | AY.44 | 0.000006 |
ORF1ab/nsp3 | 107 | Y107del | TAC | --- | 1 | 1 | AY.46 | 0.000104 |
ORF1ab/nsp3 | 107 | Y107N | TaC | AaT | 1 | 1 | AY.47 | 0.000031 |
ORF1ab/nsp3 | 107 | Y107H | Tac | Cac | 1 | 1 | AY.47 | 0.000031 |
ORF1ab/nsp3 | 107 | Y107del | TAC | --- | 1 | 1 | AY.5 | 0.000021 |
ORF1ab/nsp3 | 107 | Y107X | taC | taA | 1 | 1 | AY.53 | 0.000288 |
ORF1ab/nsp3 | 107 | Y107Y | taC | taT | 1 | 1 | AY.53 | 0.000288 |
ORF1ab/nsp3 | 107 | Y107Y | taC | taT | 1 | 1 | AY.6 | 0.000041 |
ORF1ab/nsp3 | 107 | Y107D | Tac | Gac | 1 | 1 | AY.61 | 0.000105 |
ORF1ab/nsp3 | 107 | Y107Y | taC | taT | 1 | 1 | AY.61 | 0.000105 |
ORF1ab/nsp3 | 107 | Y107H | Tac | Cac | 1 | 1 | AY.64 | 0.000595 |
ORF1ab/nsp3 | 107 | Y107H | Tac | Cac | 1 | 1 | AY.75 | 0.000056 |
ORF1ab/nsp3 | 107 | Y107Y | taC | taT | 1 | 1 | AY.78 | 0.001541 |
ORF1ab/nsp3 | 107 | Y107del2 | TAC | --A | 1 | 1 | AY.79 | 0.001211 |
ORF1ab/nsp3 | 107 | Y107Y | taC | taT | 1 | 1 | AY.8 | 0.000606 |
ORF1ab/nsp3 | 107 | Y107T | TAc | ACc | 1 | 1 | AY.9.2 | 0.000037 |
ORF1ab/nsp3 | 107 | Y107H | Tac | Cac | 1 | 1 | AY.92 | 0.000287 |
ORF1ab/nsp3 | 107 | Y107Y | taC | taT | 1 | 1 | AY.98 | 0.000079 |
ORF1ab/nsp3 | 107 | Y107X | taC | taA | 1 | 1 | AY.98.1 | 0.000048 |
ORF1ab/nsp3 | 107 | Y107H | Tac | Cac | 1 | 1 | AY.99 | 0.001049 |
ORF1ab/nsp3 | 107 | Y107D | Tac | Gac | 1 | 1 | AY.99 | 0.001049 |
ORF1ab/nsp3 | 107 | Y107X | taC | taG | 1 | 1 | B.1 | 0.000009 |
ORF1ab/nsp3 | 107 | Y107C | tAc | tGc | 1 | 1 | B.1 | 0.000009 |
ORF1ab/nsp3 | 107 | Y107N | Tac | Aac | 1 | 1 | B.1.1 | 0.000018 |
ORF1ab/nsp3 | 107 | Y107C | tAc | tGc | 1 | 1 | B.1.1 | 0.000018 |
ORF1ab/nsp3 | 107 | Y107Y | taC | taT | 1 | 1 | B.1.1.10 | 0.001115 |
ORF1ab/nsp3 | 107 | Y107Y | taC | taT | 1 | 1 | B.1.1.121 | 0.002427 |
ORF1ab/nsp3 | 107 | Y107N | Tac | Aac | 1 | 1 | B.1.1.198 | 0.001468 |
ORF1ab/nsp3 | 107 | Y107Y | taC | taT | 1 | 1 | B.1.1.198 | 0.001468 |
ORF1ab/nsp3 | 107 | Y107Y | taC | taT | 1 | 1 | B.1.1.214 | 0.000055 |
ORF1ab/nsp3 | 107 | Y107H | Tac | Cac | 1 | 1 | B.1.1.277 | 0.000759 |
ORF1ab/nsp3 | 107 | Y107Y | taC | taT | 1 | 1 | B.1.1.307 | 0.002532 |
ORF1ab/nsp3 | 107 | Y107Y | taC | taT | 1 | 1 | B.1.1.317 | 0.000412 |
ORF1ab/nsp3 | 107 | Y107del | TAC | --- | 1 | 1 | B.1.1.369 | 0.000446 |
ORF1ab/nsp3 | 107 | Y107H | Tac | Cac | 1 | 1 | B.1.1.39 | 0.00051 |
ORF1ab/nsp3 | 107 | Y107Y | taC | taT | 1 | 1 | B.1.1.430 | 0.041667 |
ORF1ab/nsp3 | 107 | Y107del2 | TAc | --c | 1 | 1 | B.1.1.432 | 0.001266 |
ORF1ab/nsp3 | 107 | Y107Y | taC | taT | 1 | 1 | B.1.1.44 | 0.00241 |
ORF1ab/nsp3 | 107 | Y107D | Tac | Gac | 1 | 1 | B.1.1.7 | 0.000001 |
ORF1ab/nsp3 | 107 | Y107C | tAc | tGc | 1 | 1 | B.1.104 | 0.00369 |
ORF1ab/nsp3 | 107 | Y107Y | taC | taT | 1 | 1 | B.1.147 | 0.000756 |
ORF1ab/nsp3 | 107 | Y107H | Tac | Cac | 1 | 1 | B.1.160 | 0.000031 |
ORF1ab/nsp3 | 107 | Y107Y | taC | taT | 1 | 1 | B.1.160.28 | 0.002924 |
ORF1ab/nsp3 | 107 | Y107del | TAC | --- | 1 | 1 | B.1.177 | 0.000013 |
ORF1ab/nsp3 | 107 | Y107H | Tac | Cac | 1 | 1 | B.1.177.23 | 0.003236 |
ORF1ab/nsp3 | 107 | Y107Y | taC | taT | 1 | 1 | B.1.177.57 | 0.000281 |
ORF1ab/nsp3 | 107 | Y107Y | taC | taT | 1 | 1 | B.1.177.7 | 0.000165 |
ORF1ab/nsp3 | 107 | Y107Y | taC | taT | 1 | 1 | B.1.177.75 | 0.001041 |
ORF1ab/nsp3 | 107 | Y107Y | taC | taT | 1 | 1 | B.1.177.79 | 0.002342 |
ORF1ab/nsp3 | 107 | Y107del1 | Tac | -ac | 1 | 1 | B.1.177.86 | 0.000183 |
ORF1ab/nsp3 | 107 | Y107D | Tac | Gac | 1 | 1 | B.1.2 | 0.000009 |
ORF1ab/nsp3 | 107 | Y107N | Tac | Aac | 1 | 1 | B.1.2 | 0.000009 |
ORF1ab/nsp3 | 107 | Y107X | taC | taA | 1 | 1 | B.1.2 | 0.000009 |
ORF1ab/nsp3 | 107 | Y107F | tAc | tTc | 1 | 1 | B.1.2 | 0.000009 |
ORF1ab/nsp3 | 107 | Y107S | tAc | tCc | 1 | 1 | B.1.2 | 0.000009 |
ORF1ab/nsp3 | 107 | Y107Y | taC | taT | 1 | 1 | B.1.210 | 0.002132 |
ORF1ab/nsp3 | 107 | Y107Y | taC | taT | 1 | 1 | B.1.240 | 0.000216 |
ORF1ab/nsp3 | 107 | Y107N | Tac | Aac | 1 | 1 | B.1.258 | 0.000067 |
ORF1ab/nsp3 | 107 | Y107H | Tac | Cac | 1 | 1 | B.1.258 | 0.000067 |
ORF1ab/nsp3 | 107 | Y107Y | taC | taT | 1 | 1 | B.1.311 | 0.000275 |
ORF1ab/nsp3 | 107 | Y107C | tAc | tGc | 1 | 1 | B.1.311 | 0.000275 |
ORF1ab/nsp3 | 107 | Y107del | TAC | --- | 1 | 1 | B.1.349 | 0.000715 |
ORF1ab/nsp3 | 107 | Y107Y | taC | taT | 1 | 1 | B.1.359 | 0.022727 |
ORF1ab/nsp3 | 107 | Y107C | tAc | tGc | 1 | 1 | B.1.36 | 0.000146 |
ORF1ab/nsp3 | 107 | Y107H | Tac | Cac | 1 | 1 | B.1.36 | 0.000146 |
ORF1ab/nsp3 | 107 | Y107Y | taC | taT | 1 | 1 | B.1.36.10 | 0.004785 |
ORF1ab/nsp3 | 107 | Y107del1 | tAc | t-c | 1 | 1 | B.1.36.29 | 0.000517 |
ORF1ab/nsp3 | 107 | Y107Y | taC | taT | 1 | 1 | B.1.396 | 0.000706 |
ORF1ab/nsp3 | 107 | Y107del | TAC | --- | 1 | 1 | B.1.416.1 | 0.001563 |
ORF1ab/nsp3 | 107 | Y107L | tAC | tTA | 1 | 1 | B.1.426 | 0.001009 |
ORF1ab/nsp3 | 107 | Y107del | TAC | --- | 1 | 1 | B.1.429 | 0.000024 |
ORF1ab/nsp3 | 107 | Y107X | taC | taA | 1 | 1 | B.1.429 | 0.000024 |
ORF1ab/nsp3 | 107 | Y107Y | taC | taT | 1 | 1 | B.1.470 | 0.001404 |
ORF1ab/nsp3 | 107 | Y107Y | taC | taT | 1 | 1 | B.1.480 | 0.002488 |
ORF1ab/nsp3 | 107 | Y107Y | taC | taT | 1 | 1 | B.1.492 | 0.007042 |
ORF1ab/nsp3 | 107 | Y107Y | taC | taT | 1 | 1 | B.1.525 | 0.000113 |
ORF1ab/nsp3 | 107 | Y107H | Tac | Cac | 1 | 1 | B.1.527 | 0.003704 |
ORF1ab/nsp3 | 107 | Y107Y | taC | taT | 1 | 1 | B.1.537 | 0.02 |
ORF1ab/nsp3 | 107 | Y107Y | taC | taT | 1 | 1 | B.1.561 | 0.000397 |
ORF1ab/nsp3 | 107 | Y107del | TAC | --- | 1 | 1 | B.1.561 | 0.000397 |
ORF1ab/nsp3 | 107 | Y107Y | taC | taT | 1 | 1 | B.1.575 | 0.000303 |
ORF1ab/nsp3 | 107 | Y107del | TAC | --- | 1 | 1 | B.1.577 | 0.000687 |
ORF1ab/nsp3 | 107 | Y107Y | taC | taT | 1 | 1 | B.1.596 | 0.000087 |
ORF1ab/nsp3 | 107 | Y107Y | taC | taT | 1 | 1 | B.1.617.1 | 0.000129 |
ORF1ab/nsp3 | 107 | Y107del | TAC | --- | 1 | 1 | B.1.617.1 | 0.000129 |
ORF1ab/nsp3 | 107 | Y107del2 | TAC | --A | 1 | 1 | B.1.617.2 | 0.000004 |
ORF1ab/nsp3 | 107 | Y107del | TAC | --- | 1 | 1 | B.1.617.2 | 0.000004 |
ORF1ab/nsp3 | 107 | Y107del1 | taC | ta- | 1 | 1 | B.1.617.2 | 0.000004 |
ORF1ab/nsp3 | 107 | Y107P | TAC | CCT | 1 | 1 | B.1.617.2 | 0.000004 |
ORF1ab/nsp3 | 107 | Y107Y | taC | taT | 1 | 1 | B.1.621 | 0.000089 |
ORF1ab/nsp3 | 107 | Y107H | Tac | Cac | 1 | 1 | B.1.625 | 0.002353 |
ORF1ab/nsp3 | 107 | Y107X | taC | taA | 1 | 1 | B.1.628 | 0.000352 |
ORF1ab/nsp3 | 107 | Y107Y | taC | taT | 1 | 1 | B.1.634 | 0.003425 |
ORF1ab/nsp3 | 107 | Y107Y | taC | taT | 1 | 1 | B.1.637 | 0.000073 |
ORF1ab/nsp3 | 107 | Y107Y | taC | taT | 1 | 1 | B.3 | 0.000831 |
ORF1ab/nsp3 | 107 | Y107del2 | TAc | --c | 1 | 1 | B.34 | 0.013699 |
ORF1ab/nsp3 | 107 | Y107C | tAc | tGc | 1 | 1 | C.37 | 0.000116 |
ORF1ab/nsp3 | 107 | Y107Y | taC | taT | 1 | 1 | M.2 | 0.083333 |
ORF1ab/nsp3 | 107 | Y107H | Tac | Cac | 1 | 1 | P.1.12 | 0.000484 |
ORF1ab/nsp3 | 107 | Y107Y | taC | taT | 1 | 1 | P.1.14 | 0.000048 |
ORF1ab/nsp3 | 107 | Y107Y | taC | taT | 1 | 1 | P.1.17 | 0.000162 |
ORF1ab/nsp3 | 107 | Y107Y | taC | taT | 1 | 1 | P.1.7 | 0.000319 |
ORF1ab/nsp3 | 107 | Y107Y | taC | taT | 1 | 1 | Q.8 | 0.000165 |
ORF1ab/nsp3 | 107 | Y107Y | taC | taT | 1 | 1 | Y.1 | 0.012821 |
CoV-GLUE is still in development. CoV-GLUE was originally developed as part of COG-UK by Josh Singer using the GLUE framework at the MRC-University of Glasgow Centre for Virus Research (CVR). In 2021 it was redeveloped by Richard Orton to scale to the millions of genome sequences available. We acknowledge support from the MRC (MC_UU_12014/12), WT (220977/Z/20/Z) and UKRI G2P (MR/W005611/1). Please contact Richard Orton with any queries: Richard.Orton@glasgow.ac.uk
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