CoV-GLUE | Mutations | Mutation
Details of the codons used for the mutation across all lineages (CodonProp is the proportion each codon is used for this AA mutation):
ORF | CodonNum | Mut | ORF1abMut | MutType | RefCodon | MutCodon | AACount | CodonCount | CodonProp | Genome Position |
ORF1ab/nsp3 | 1069 | V1069I | V1887I | nonsyn | Gtt | Att | 940 | 938 | 0.997872 | 5924-5926 |
ORF1ab/nsp3 | 1069 | V1069I | V1887I | nonsyn | GtT | AtA | 940 | 1 | 0.00106383 | 5924-5926 |
ORF1ab/nsp3 | 1069 | V1069I | V1887I | nonsyn | GtT | AtC | 940 | 1 | 0.00106383 | 5924-5926 |
ORF1ab/nsp3 | 1069 | V1069V | V1887V | syn | gtT | gtC | 237 | 209 | 0.881857 | 5924-5926 |
ORF1ab/nsp3 | 1069 | V1069V | V1887V | syn | gtT | gtA | 237 | 24 | 0.101266 | 5924-5926 |
ORF1ab/nsp3 | 1069 | V1069V | V1887V | syn | gtT | gtG | 237 | 4 | 0.0168776 | 5924-5926 |
ORF1ab/nsp3 | 1069 | V1069F | V1887F | nonsyn | Gtt | Ttt | 199 | 198 | 0.994975 | 5924-5926 |
ORF1ab/nsp3 | 1069 | V1069F | V1887F | nonsyn | GtT | TtC | 199 | 1 | 0.00502513 | 5924-5926 |
ORF1ab/nsp3 | 1069 | V1069A | V1887A | nonsyn | gTt | gCt | 111 | 109 | 0.981982 | 5924-5926 |
ORF1ab/nsp3 | 1069 | V1069A | V1887A | nonsyn | gTT | gCA | 111 | 2 | 0.018018 | 5924-5926 |
ORF1ab/nsp3 | 1069 | V1069del | V1887del | del | GTT | --- | 17 | 17 | 1 | 5924-5926 |
ORF1ab/nsp3 | 1069 | V1069G | V1887G | nonsyn | gTt | gGt | 8 | 6 | 0.75 | 5924-5926 |
ORF1ab/nsp3 | 1069 | V1069G | V1887G | nonsyn | gTT | gGA | 8 | 1 | 0.125 | 5924-5926 |
ORF1ab/nsp3 | 1069 | V1069G | V1887G | nonsyn | gTT | gGC | 8 | 1 | 0.125 | 5924-5926 |
ORF1ab/nsp3 | 1069 | V1069T | V1887T | nonsyn | GTt | ACt | 4 | 3 | 0.75 | 5924-5926 |
ORF1ab/nsp3 | 1069 | V1069T | V1887T | nonsyn | GTT | ACA | 4 | 1 | 0.25 | 5924-5926 |
ORF1ab/nsp3 | 1069 | V1069S | V1887S | nonsyn | GTt | AGt | 3 | 2 | 0.666667 | 5924-5926 |
ORF1ab/nsp3 | 1069 | V1069S | V1887S | nonsyn | GTT | AGC | 3 | 1 | 0.333333 | 5924-5926 |
ORF1ab/nsp3 | 1069 | V1069del1 | V1887del1 | del | gTt | g-t | 3 | 1 | 0.333333 | 5924-5926 |
ORF1ab/nsp3 | 1069 | V1069del1 | V1887del1 | del | Gtt | -tt | 3 | 1 | 0.333333 | 5924-5926 |
ORF1ab/nsp3 | 1069 | V1069del1 | V1887del1 | del | gtT | gt- | 3 | 1 | 0.333333 | 5924-5926 |
ORF1ab/nsp3 | 1069 | V1069L | V1887L | nonsyn | Gtt | Ctt | 2 | 2 | 1 | 5924-5926 |
ORF1ab/nsp3 | 1069 | V1069R | V1887R | nonsyn | GTT | AGA | 2 | 2 | 1 | 5924-5926 |
ORF1ab/nsp3 | 1069 | V1069D | V1887D | nonsyn | gTt | gAt | 2 | 2 | 1 | 5924-5926 |
ORF1ab/nsp3 | 1069 | V1069C | V1887C | nonsyn | GTT | TGC | 2 | 1 | 0.5 | 5924-5926 |
ORF1ab/nsp3 | 1069 | V1069C | V1887C | nonsyn | GTt | TGt | 2 | 1 | 0.5 | 5924-5926 |
ORF1ab/nsp3 | 1069 | V1069N | V1887N | nonsyn | GTt | AAt | 1 | 1 | 1 | 5924-5926 |
Details of the mutation no within lineages (LineageCodonProp is the proportion the codon is observed at, at this particular site, on each lineage):
ORF | CodonNum | Mut | RefCodon | MutCodon | CodonCount | AACount | Lineage | LineageCodonProp |
ORF1ab/nsp3 | 1069 | V1069I | Gtt | Att | 938 | 940 | All | 0.000179 |
ORF1ab/nsp3 | 1069 | V1069I | GtT | AtA | 1 | 940 | All | 0 |
ORF1ab/nsp3 | 1069 | V1069I | GtT | AtC | 1 | 940 | All | 0 |
ORF1ab/nsp3 | 1069 | V1069I | Gtt | Att | 642 | 642 | B.1.1.263 | 1 |
ORF1ab/nsp3 | 1069 | V1069V | gtT | gtC | 209 | 237 | All | 0.00004 |
ORF1ab/nsp3 | 1069 | V1069V | gtT | gtA | 24 | 237 | All | 0.000005 |
ORF1ab/nsp3 | 1069 | V1069V | gtT | gtG | 4 | 237 | All | 0.000001 |
ORF1ab/nsp3 | 1069 | V1069F | Gtt | Ttt | 198 | 199 | All | 0.000038 |
ORF1ab/nsp3 | 1069 | V1069F | GtT | TtC | 1 | 199 | All | 0 |
ORF1ab/nsp3 | 1069 | V1069V | gtT | gtC | 115 | 117 | AY.4 | 0.000179 |
ORF1ab/nsp3 | 1069 | V1069V | gtT | gtA | 1 | 117 | AY.4 | 0.000002 |
ORF1ab/nsp3 | 1069 | V1069V | gtT | gtG | 1 | 117 | AY.4 | 0.000002 |
ORF1ab/nsp3 | 1069 | V1069A | gTt | gCt | 109 | 111 | All | 0.000021 |
ORF1ab/nsp3 | 1069 | V1069A | gTT | gCA | 2 | 111 | All | 0 |
ORF1ab/nsp3 | 1069 | V1069I | Gtt | Att | 58 | 58 | B.1.1.7 | 0.000052 |
ORF1ab/nsp3 | 1069 | V1069V | gtT | gtC | 36 | 39 | B.1.1.7 | 0.000032 |
ORF1ab/nsp3 | 1069 | V1069V | gtT | gtA | 3 | 39 | B.1.1.7 | 0.000003 |
ORF1ab/nsp3 | 1069 | V1069A | gTt | gCt | 34 | 34 | B.1.1.7 | 0.00003 |
ORF1ab/nsp3 | 1069 | V1069F | Gtt | Ttt | 31 | 31 | B.1.438.1 | 0.003325 |
ORF1ab/nsp3 | 1069 | V1069A | gTt | gCt | 30 | 30 | B.1.1 | 0.000544 |
ORF1ab/nsp3 | 1069 | V1069I | Gtt | Att | 20 | 20 | B.1 | 0.000183 |
ORF1ab/nsp3 | 1069 | V1069F | Gtt | Ttt | 19 | 19 | AY.103 | 0.000118 |
ORF1ab/nsp3 | 1069 | V1069I | Gtt | Att | 18 | 18 | AY.22 | 0.037657 |
ORF1ab/nsp3 | 1069 | V1069I | Gtt | Att | 18 | 18 | AY.3 | 0.000179 |
ORF1ab/nsp3 | 1069 | V1069F | Gtt | Ttt | 18 | 18 | B.1.177.21 | 0.001376 |
ORF1ab/nsp3 | 1069 | V1069F | Gtt | Ttt | 18 | 18 | D.2 | 0.001351 |
ORF1ab/nsp3 | 1069 | V1069I | Gtt | Att | 18 | 18 | Q.4 | 0.008186 |
ORF1ab/nsp3 | 1069 | V1069del | GTT | --- | 17 | 17 | All | 0.000003 |
ORF1ab/nsp3 | 1069 | V1069I | Gtt | Att | 16 | 16 | AY.4 | 0.000025 |
ORF1ab/nsp3 | 1069 | V1069V | gtT | gtC | 15 | 15 | B.1.2 | 0.000132 |
ORF1ab/nsp3 | 1069 | V1069I | Gtt | Att | 14 | 14 | B.1.617.2 | 0.000053 |
ORF1ab/nsp3 | 1069 | V1069I | Gtt | Att | 12 | 12 | AY.46.6 | 0.000866 |
ORF1ab/nsp3 | 1069 | V1069F | Gtt | Ttt | 11 | 11 | AY.26 | 0.000311 |
ORF1ab/nsp3 | 1069 | V1069F | Gtt | Ttt | 11 | 11 | B.1 | 0.000101 |
ORF1ab/nsp3 | 1069 | V1069I | Gtt | Att | 10 | 10 | AY.43 | 0.000044 |
ORF1ab/nsp3 | 1069 | V1069I | Gtt | Att | 10 | 10 | B.1.1 | 0.000181 |
ORF1ab/nsp3 | 1069 | V1069I | Gtt | Att | 10 | 10 | B.1.2 | 0.000088 |
ORF1ab/nsp3 | 1069 | V1069F | Gtt | Ttt | 9 | 9 | B.1.1.284 | 0.000967 |
ORF1ab/nsp3 | 1069 | V1069F | Gtt | Ttt | 9 | 9 | B.1.1.7 | 0.000008 |
ORF1ab/nsp3 | 1069 | V1069G | gTt | gGt | 6 | 8 | All | 0.000001 |
ORF1ab/nsp3 | 1069 | V1069G | gTT | gGA | 1 | 8 | All | 0 |
ORF1ab/nsp3 | 1069 | V1069G | gTT | gGC | 1 | 8 | All | 0 |
ORF1ab/nsp3 | 1069 | V1069I | Gtt | Att | 7 | 7 | AY.119 | 0.000247 |
ORF1ab/nsp3 | 1069 | V1069A | gTt | gCt | 7 | 7 | AY.26 | 0.000198 |
ORF1ab/nsp3 | 1069 | V1069I | Gtt | Att | 7 | 7 | AY.46 | 0.000729 |
ORF1ab/nsp3 | 1069 | V1069I | Gtt | Att | 7 | 7 | B.1.429 | 0.000165 |
ORF1ab/nsp3 | 1069 | V1069V | gtT | gtC | 7 | 7 | P.1 | 0.00011 |
ORF1ab/nsp3 | 1069 | V1069A | gTt | gCt | 6 | 6 | AY.4.4 | 0.002455 |
ORF1ab/nsp3 | 1069 | V1069F | Gtt | Ttt | 6 | 6 | B.1.1.317 | 0.00247 |
ORF1ab/nsp3 | 1069 | V1069I | Gtt | Att | 6 | 6 | B.1.104 | 0.02214 |
ORF1ab/nsp3 | 1069 | V1069I | Gtt | Att | 3 | 5 | 0.166667 | |
ORF1ab/nsp3 | 1069 | V1069I | GtT | AtC | 1 | 5 | 0.055556 | |
ORF1ab/nsp3 | 1069 | V1069I | GtT | AtA | 1 | 5 | 0.055556 | |
ORF1ab/nsp3 | 1069 | V1069V | gtT | gtC | 5 | 5 | B.1.160.25 | 0.055556 |
ORF1ab/nsp3 | 1069 | V1069F | Gtt | Ttt | 5 | 5 | B.1.177.60 | 0.001092 |
ORF1ab/nsp3 | 1069 | V1069F | Gtt | Ttt | 5 | 5 | B.1.2 | 0.000044 |
ORF1ab/nsp3 | 1069 | V1069A | gTt | gCt | 5 | 5 | B.1.637 | 0.000365 |
ORF1ab/nsp3 | 1069 | V1069G | gTt | gGt | 2 | 4 | 0.111111 | |
ORF1ab/nsp3 | 1069 | V1069G | gTT | gGA | 1 | 4 | 0.055556 | |
ORF1ab/nsp3 | 1069 | V1069G | gTT | gGC | 1 | 4 | 0.055556 | |
ORF1ab/nsp3 | 1069 | V1069T | GTt | ACt | 3 | 4 | All | 0.000001 |
ORF1ab/nsp3 | 1069 | V1069T | GTT | ACA | 1 | 4 | All | 0 |
ORF1ab/nsp3 | 1069 | V1069F | Gtt | Ttt | 4 | 4 | AY.121 | 0.000541 |
ORF1ab/nsp3 | 1069 | V1069I | Gtt | Att | 4 | 4 | AY.75.1 | 0.000721 |
ORF1ab/nsp3 | 1069 | V1069V | gtT | gtA | 3 | 4 | B.1 | 0.000027 |
ORF1ab/nsp3 | 1069 | V1069V | gtT | gtC | 1 | 4 | B.1 | 0.000009 |
ORF1ab/nsp3 | 1069 | V1069I | Gtt | Att | 4 | 4 | B.1.36 | 0.000584 |
ORF1ab/nsp3 | 1069 | V1069I | Gtt | Att | 4 | 4 | B.1.369 | 0.001141 |
ORF1ab/nsp3 | 1069 | V1069F | Gtt | Ttt | 4 | 4 | B.1.617.2 | 0.000015 |
ORF1ab/nsp3 | 1069 | V1069I | Gtt | Att | 4 | 4 | B.1.637 | 0.000292 |
ORF1ab/nsp3 | 1069 | V1069I | Gtt | Att | 4 | 4 | P.1 | 0.000063 |
ORF1ab/nsp3 | 1069 | V1069S | GTt | AGt | 2 | 3 | 0.111111 | |
ORF1ab/nsp3 | 1069 | V1069S | GTT | AGC | 1 | 3 | 0.055556 | |
ORF1ab/nsp3 | 1069 | V1069S | GTt | AGt | 2 | 3 | All | 0 |
ORF1ab/nsp3 | 1069 | V1069S | GTT | AGC | 1 | 3 | All | 0 |
ORF1ab/nsp3 | 1069 | V1069del1 | Gtt | -tt | 1 | 3 | All | 0 |
ORF1ab/nsp3 | 1069 | V1069del1 | gTt | g-t | 1 | 3 | All | 0 |
ORF1ab/nsp3 | 1069 | V1069del1 | gtT | gt- | 1 | 3 | All | 0 |
ORF1ab/nsp3 | 1069 | V1069F | Gtt | Ttt | 3 | 3 | AY.25 | 0.000018 |
ORF1ab/nsp3 | 1069 | V1069I | Gtt | Att | 3 | 3 | AY.39 | 0.000074 |
ORF1ab/nsp3 | 1069 | V1069V | gtT | gtC | 2 | 3 | AY.39 | 0.000049 |
ORF1ab/nsp3 | 1069 | V1069V | gtT | gtA | 1 | 3 | AY.39 | 0.000025 |
ORF1ab/nsp3 | 1069 | V1069F | Gtt | Ttt | 3 | 3 | AY.43 | 0.000013 |
ORF1ab/nsp3 | 1069 | V1069V | gtT | gtC | 3 | 3 | AY.44 | 0.000018 |
ORF1ab/nsp3 | 1069 | V1069V | gtT | gtC | 3 | 3 | AY.98.1 | 0.000145 |
ORF1ab/nsp3 | 1069 | V1069I | Gtt | Att | 3 | 3 | B | 0.000383 |
ORF1ab/nsp3 | 1069 | V1069del | GTT | --- | 3 | 3 | B.1.1.7 | 0.000003 |
ORF1ab/nsp3 | 1069 | V1069V | gtT | gtA | 3 | 3 | B.1.36 | 0.000438 |
ORF1ab/nsp3 | 1069 | V1069V | gtT | gtC | 3 | 3 | B.1.617.2 | 0.000011 |
ORF1ab/nsp3 | 1069 | V1069A | gTt | gCt | 3 | 3 | C.37 | 0.000348 |
ORF1ab/nsp3 | 1069 | V1069F | Gtt | Ttt | 3 | 3 | Q.2 | 0.00184 |
ORF1ab/nsp3 | 1069 | V1069F | GtT | TtC | 1 | 2 | 0.055556 | |
ORF1ab/nsp3 | 1069 | V1069T | GTT | ACA | 1 | 2 | 0.055556 | |
ORF1ab/nsp3 | 1069 | V1069A | gTT | gCA | 1 | 2 | 0.055556 | |
ORF1ab/nsp3 | 1069 | V1069C | GTt | TGt | 1 | 2 | 0.055556 | |
ORF1ab/nsp3 | 1069 | V1069T | GTt | ACt | 1 | 2 | 0.055556 | |
ORF1ab/nsp3 | 1069 | V1069V | gtT | gtA | 1 | 2 | 0.055556 | |
ORF1ab/nsp3 | 1069 | V1069V | gtT | gtC | 1 | 2 | 0.055556 | |
ORF1ab/nsp3 | 1069 | V1069A | gTt | gCt | 1 | 2 | 0.055556 | |
ORF1ab/nsp3 | 1069 | V1069F | Gtt | Ttt | 1 | 2 | 0.055556 | |
ORF1ab/nsp3 | 1069 | V1069C | GTT | TGC | 1 | 2 | 0.055556 | |
ORF1ab/nsp3 | 1069 | V1069R | GTT | AGA | 2 | 2 | All | 0 |
ORF1ab/nsp3 | 1069 | V1069L | Gtt | Ctt | 2 | 2 | All | 0 |
ORF1ab/nsp3 | 1069 | V1069D | gTt | gAt | 2 | 2 | All | 0 |
ORF1ab/nsp3 | 1069 | V1069C | GTt | TGt | 1 | 2 | All | 0 |
ORF1ab/nsp3 | 1069 | V1069C | GTT | TGC | 1 | 2 | All | 0 |
ORF1ab/nsp3 | 1069 | V1069I | Gtt | Att | 2 | 2 | AY.102 | 0.000053 |
ORF1ab/nsp3 | 1069 | V1069I | Gtt | Att | 2 | 2 | AY.103 | 0.000012 |
ORF1ab/nsp3 | 1069 | V1069A | gTt | gCt | 2 | 2 | AY.103 | 0.000012 |
ORF1ab/nsp3 | 1069 | V1069F | Gtt | Ttt | 2 | 2 | AY.117 | 0.000169 |
ORF1ab/nsp3 | 1069 | V1069I | Gtt | Att | 2 | 2 | AY.118 | 0.000125 |
ORF1ab/nsp3 | 1069 | V1069V | gtT | gtG | 1 | 2 | AY.25 | 0.000006 |
ORF1ab/nsp3 | 1069 | V1069V | gtT | gtA | 1 | 2 | AY.25 | 0.000006 |
ORF1ab/nsp3 | 1069 | V1069F | Gtt | Ttt | 2 | 2 | AY.3 | 0.00002 |
ORF1ab/nsp3 | 1069 | V1069A | gTt | gCt | 2 | 2 | AY.4 | 0.000003 |
ORF1ab/nsp3 | 1069 | V1069F | Gtt | Ttt | 2 | 2 | AY.4 | 0.000003 |
ORF1ab/nsp3 | 1069 | V1069V | gtT | gtC | 1 | 2 | AY.43 | 0.000004 |
ORF1ab/nsp3 | 1069 | V1069V | gtT | gtA | 1 | 2 | AY.43 | 0.000004 |
ORF1ab/nsp3 | 1069 | V1069F | Gtt | Ttt | 2 | 2 | AY.44 | 0.000012 |
ORF1ab/nsp3 | 1069 | V1069V | gtT | gtC | 2 | 2 | AY.45 | 0.000243 |
ORF1ab/nsp3 | 1069 | V1069I | Gtt | Att | 2 | 2 | AY.6 | 0.000082 |
ORF1ab/nsp3 | 1069 | V1069I | Gtt | Att | 2 | 2 | AY.84 | 0.000875 |
ORF1ab/nsp3 | 1069 | V1069del | GTT | --- | 2 | 2 | B.1 | 0.000018 |
ORF1ab/nsp3 | 1069 | V1069V | gtT | gtA | 2 | 2 | B.1.1 | 0.000036 |
ORF1ab/nsp3 | 1069 | V1069F | Gtt | Ttt | 2 | 2 | B.1.1.255 | 0.006061 |
ORF1ab/nsp3 | 1069 | V1069I | Gtt | Att | 2 | 2 | B.1.1.28 | 0.000622 |
ORF1ab/nsp3 | 1069 | V1069G | gTt | gGt | 2 | 2 | B.1.1.7 | 0.000002 |
ORF1ab/nsp3 | 1069 | V1069I | Gtt | Att | 2 | 2 | B.1.160 | 0.000062 |
ORF1ab/nsp3 | 1069 | V1069I | Gtt | Att | 2 | 2 | B.1.177 | 0.000026 |
ORF1ab/nsp3 | 1069 | V1069A | gTt | gCt | 2 | 2 | B.1.2 | 0.000018 |
ORF1ab/nsp3 | 1069 | V1069I | Gtt | Att | 2 | 2 | B.1.243 | 0.000139 |
ORF1ab/nsp3 | 1069 | V1069F | Gtt | Ttt | 2 | 2 | B.1.258.17 | 0.000208 |
ORF1ab/nsp3 | 1069 | V1069F | Gtt | Ttt | 2 | 2 | B.1.324 | 0.00321 |
ORF1ab/nsp3 | 1069 | V1069F | Gtt | Ttt | 2 | 2 | B.1.351 | 0.000059 |
ORF1ab/nsp3 | 1069 | V1069F | Gtt | Ttt | 2 | 2 | B.1.36.29 | 0.001035 |
ORF1ab/nsp3 | 1069 | V1069A | gTt | gCt | 2 | 2 | B.1.429 | 0.000047 |
ORF1ab/nsp3 | 1069 | V1069V | gtT | gtG | 1 | 2 | B.1.429 | 0.000024 |
ORF1ab/nsp3 | 1069 | V1069V | gtT | gtC | 1 | 2 | B.1.429 | 0.000024 |
ORF1ab/nsp3 | 1069 | V1069A | gTt | gCt | 2 | 2 | B.1.438.1 | 0.000215 |
ORF1ab/nsp3 | 1069 | V1069V | gtT | gtC | 2 | 2 | B.1.525 | 0.000226 |
ORF1ab/nsp3 | 1069 | V1069V | gtT | gtA | 2 | 2 | B.1.621.1 | 0.001012 |
ORF1ab/nsp3 | 1069 | V1069R | GTT | AGA | 1 | 1 | 0.055556 | |
ORF1ab/nsp3 | 1069 | V1069N | GTt | AAt | 1 | 1 | 0.055556 | |
ORF1ab/nsp3 | 1069 | V1069D | gTt | gAt | 1 | 1 | 0.055556 | |
ORF1ab/nsp3 | 1069 | V1069F | Gtt | Ttt | 1 | 1 | A.2 | 0.000662 |
ORF1ab/nsp3 | 1069 | V1069V | gtT | gtC | 1 | 1 | A.2.5 | 0.000499 |
ORF1ab/nsp3 | 1069 | V1069N | GTt | AAt | 1 | 1 | All | 0 |
ORF1ab/nsp3 | 1069 | V1069L | Gtt | Ctt | 1 | 1 | AU.1 | 0.001266 |
ORF1ab/nsp3 | 1069 | V1069F | Gtt | Ttt | 1 | 1 | AY.102 | 0.000027 |
ORF1ab/nsp3 | 1069 | V1069A | gTt | gCt | 1 | 1 | AY.102 | 0.000027 |
ORF1ab/nsp3 | 1069 | V1069V | gtT | gtC | 1 | 1 | AY.103 | 0.000006 |
ORF1ab/nsp3 | 1069 | V1069F | Gtt | Ttt | 1 | 1 | AY.113 | 0.000142 |
ORF1ab/nsp3 | 1069 | V1069V | gtT | gtC | 1 | 1 | AY.118 | 0.000063 |
ORF1ab/nsp3 | 1069 | V1069I | Gtt | Att | 1 | 1 | AY.120 | 0.000037 |
ORF1ab/nsp3 | 1069 | V1069F | Gtt | Ttt | 1 | 1 | AY.120 | 0.000037 |
ORF1ab/nsp3 | 1069 | V1069I | Gtt | Att | 1 | 1 | AY.121 | 0.000135 |
ORF1ab/nsp3 | 1069 | V1069F | Gtt | Ttt | 1 | 1 | AY.14 | 0.000088 |
ORF1ab/nsp3 | 1069 | V1069V | gtT | gtC | 1 | 1 | AY.23 | 0.00007 |
ORF1ab/nsp3 | 1069 | V1069I | Gtt | Att | 1 | 1 | AY.25 | 0.000006 |
ORF1ab/nsp3 | 1069 | V1069L | Gtt | Ctt | 1 | 1 | AY.25 | 0.000006 |
ORF1ab/nsp3 | 1069 | V1069V | gtT | gtC | 1 | 1 | AY.27 | 0.000065 |
ORF1ab/nsp3 | 1069 | V1069F | Gtt | Ttt | 1 | 1 | AY.3.1 | 0.000085 |
ORF1ab/nsp3 | 1069 | V1069del | GTT | --- | 1 | 1 | AY.36 | 0.000148 |
ORF1ab/nsp3 | 1069 | V1069F | Gtt | Ttt | 1 | 1 | AY.39 | 0.000025 |
ORF1ab/nsp3 | 1069 | V1069del | GTT | --- | 1 | 1 | AY.4 | 0.000002 |
ORF1ab/nsp3 | 1069 | V1069I | Gtt | Att | 1 | 1 | AY.4.2 | 0.000022 |
ORF1ab/nsp3 | 1069 | V1069I | Gtt | Att | 1 | 1 | AY.4.3 | 0.000842 |
ORF1ab/nsp3 | 1069 | V1069del | GTT | --- | 1 | 1 | AY.4.3 | 0.000842 |
ORF1ab/nsp3 | 1069 | V1069A | gTt | gCt | 1 | 1 | AY.42 | 0.00004 |
ORF1ab/nsp3 | 1069 | V1069A | gTt | gCt | 1 | 1 | AY.44 | 0.000006 |
ORF1ab/nsp3 | 1069 | V1069F | Gtt | Ttt | 1 | 1 | AY.46.4 | 0.000165 |
ORF1ab/nsp3 | 1069 | V1069V | gtT | gtA | 1 | 1 | AY.47 | 0.000031 |
ORF1ab/nsp3 | 1069 | V1069I | Gtt | Att | 1 | 1 | AY.47 | 0.000031 |
ORF1ab/nsp3 | 1069 | V1069I | Gtt | Att | 1 | 1 | AY.5 | 0.000021 |
ORF1ab/nsp3 | 1069 | V1069F | Gtt | Ttt | 1 | 1 | AY.5 | 0.000021 |
ORF1ab/nsp3 | 1069 | V1069del | GTT | --- | 1 | 1 | AY.61 | 0.000105 |
ORF1ab/nsp3 | 1069 | V1069F | Gtt | Ttt | 1 | 1 | AY.65 | 0.000533 |
ORF1ab/nsp3 | 1069 | V1069del | GTT | --- | 1 | 1 | AY.75 | 0.000056 |
ORF1ab/nsp3 | 1069 | V1069del | GTT | --- | 1 | 1 | AY.85 | 0.000427 |
ORF1ab/nsp3 | 1069 | V1069del1 | gTt | g-t | 1 | 1 | AY.85 | 0.000427 |
ORF1ab/nsp3 | 1069 | V1069V | gtT | gtA | 1 | 1 | AY.91 | 0.00073 |
ORF1ab/nsp3 | 1069 | V1069F | Gtt | Ttt | 1 | 1 | AY.98.1 | 0.000048 |
ORF1ab/nsp3 | 1069 | V1069R | GTT | AGA | 1 | 1 | B.1 | 0.000009 |
ORF1ab/nsp3 | 1069 | V1069A | gTt | gCt | 1 | 1 | B.1 | 0.000009 |
ORF1ab/nsp3 | 1069 | V1069F | Gtt | Ttt | 1 | 1 | B.1.1 | 0.000018 |
ORF1ab/nsp3 | 1069 | V1069T | GTt | ACt | 1 | 1 | B.1.1 | 0.000018 |
ORF1ab/nsp3 | 1069 | V1069G | gTt | gGt | 1 | 1 | B.1.1 | 0.000018 |
ORF1ab/nsp3 | 1069 | V1069V | gtT | gtA | 1 | 1 | B.1.1.161 | 0.003534 |
ORF1ab/nsp3 | 1069 | V1069I | Gtt | Att | 1 | 1 | B.1.1.208 | 0.012195 |
ORF1ab/nsp3 | 1069 | V1069D | gTt | gAt | 1 | 1 | B.1.1.300 | 0.010753 |
ORF1ab/nsp3 | 1069 | V1069A | gTt | gCt | 1 | 1 | B.1.1.409 | 0.002833 |
ORF1ab/nsp3 | 1069 | V1069V | gtT | gtC | 1 | 1 | B.1.1.416 | 0.000905 |
ORF1ab/nsp3 | 1069 | V1069V | gtT | gtC | 1 | 1 | B.1.1.512 | 0.028571 |
ORF1ab/nsp3 | 1069 | V1069V | gtT | gtA | 1 | 1 | B.1.1.519 | 0.00004 |
ORF1ab/nsp3 | 1069 | V1069F | Gtt | Ttt | 1 | 1 | B.1.1.63 | 0.000386 |
ORF1ab/nsp3 | 1069 | V1069I | Gtt | Att | 1 | 1 | B.1.111 | 0.001175 |
ORF1ab/nsp3 | 1069 | V1069F | Gtt | Ttt | 1 | 1 | B.1.160 | 0.000031 |
ORF1ab/nsp3 | 1069 | V1069V | gtT | gtC | 1 | 1 | B.1.177 | 0.000013 |
ORF1ab/nsp3 | 1069 | V1069A | gTt | gCt | 1 | 1 | B.1.177 | 0.000013 |
ORF1ab/nsp3 | 1069 | V1069V | gtT | gtC | 1 | 1 | B.1.177.20 | 0.001517 |
ORF1ab/nsp3 | 1069 | V1069del | GTT | --- | 1 | 1 | B.1.177.32 | 0.00135 |
ORF1ab/nsp3 | 1069 | V1069V | gtT | gtG | 1 | 1 | B.1.177.54 | 0.000606 |
ORF1ab/nsp3 | 1069 | V1069I | Gtt | Att | 1 | 1 | B.1.177.87 | 0.000728 |
ORF1ab/nsp3 | 1069 | V1069del1 | gtT | gt- | 1 | 1 | B.1.2 | 0.000009 |
ORF1ab/nsp3 | 1069 | V1069I | Gtt | Att | 1 | 1 | B.1.234 | 0.000132 |
ORF1ab/nsp3 | 1069 | V1069F | Gtt | Ttt | 1 | 1 | B.1.241 | 0.000812 |
ORF1ab/nsp3 | 1069 | V1069T | GTt | ACt | 1 | 1 | B.1.258 | 0.000067 |
ORF1ab/nsp3 | 1069 | V1069A | gTt | gCt | 1 | 1 | B.1.311 | 0.000275 |
ORF1ab/nsp3 | 1069 | V1069I | Gtt | Att | 1 | 1 | B.1.351 | 0.00003 |
ORF1ab/nsp3 | 1069 | V1069del | GTT | --- | 1 | 1 | B.1.351 | 0.00003 |
ORF1ab/nsp3 | 1069 | V1069V | gtT | gtC | 1 | 1 | B.1.351 | 0.00003 |
ORF1ab/nsp3 | 1069 | V1069del | GTT | --- | 1 | 1 | B.1.36 | 0.000146 |
ORF1ab/nsp3 | 1069 | V1069I | Gtt | Att | 1 | 1 | B.1.36.18 | 0.00042 |
ORF1ab/nsp3 | 1069 | V1069I | Gtt | Att | 1 | 1 | B.1.36.8 | 0.001 |
ORF1ab/nsp3 | 1069 | V1069A | gTt | gCt | 1 | 1 | B.1.369 | 0.000285 |
ORF1ab/nsp3 | 1069 | V1069F | Gtt | Ttt | 1 | 1 | B.1.429 | 0.000024 |
ORF1ab/nsp3 | 1069 | V1069A | gTt | gCt | 1 | 1 | B.1.525 | 0.000113 |
ORF1ab/nsp3 | 1069 | V1069V | gtT | gtA | 1 | 1 | B.1.526 | 0.000024 |
ORF1ab/nsp3 | 1069 | V1069A | gTt | gCt | 1 | 1 | B.1.575 | 0.000303 |
ORF1ab/nsp3 | 1069 | V1069F | Gtt | Ttt | 1 | 1 | B.1.595 | 0.000261 |
ORF1ab/nsp3 | 1069 | V1069F | Gtt | Ttt | 1 | 1 | B.1.606 | 0.006024 |
ORF1ab/nsp3 | 1069 | V1069V | gtT | gtC | 1 | 1 | B.1.617.1 | 0.000129 |
ORF1ab/nsp3 | 1069 | V1069A | gTt | gCt | 1 | 1 | B.1.617.2 | 0.000004 |
ORF1ab/nsp3 | 1069 | V1069del | GTT | --- | 1 | 1 | B.1.617.2 | 0.000004 |
ORF1ab/nsp3 | 1069 | V1069A | gTt | gCt | 1 | 1 | B.1.619.1 | 0.000641 |
ORF1ab/nsp3 | 1069 | V1069G | gTt | gGt | 1 | 1 | B.1.9.4 | 0.006135 |
ORF1ab/nsp3 | 1069 | V1069I | Gtt | Att | 1 | 1 | B.1.9.5 | 0.005682 |
ORF1ab/nsp3 | 1069 | V1069del | GTT | --- | 1 | 1 | B.15 | 0.017544 |
ORF1ab/nsp3 | 1069 | V1069F | Gtt | Ttt | 1 | 1 | B.29 | 0.003509 |
ORF1ab/nsp3 | 1069 | V1069A | gTT | gCA | 1 | 1 | C.35 | 0.000774 |
ORF1ab/nsp3 | 1069 | V1069V | gtT | gtA | 1 | 1 | C.37 | 0.000116 |
ORF1ab/nsp3 | 1069 | V1069I | Gtt | Att | 1 | 1 | N.9 | 0.005952 |
ORF1ab/nsp3 | 1069 | V1069del | GTT | --- | 1 | 1 | P.1 | 0.000016 |
ORF1ab/nsp3 | 1069 | V1069F | Gtt | Ttt | 1 | 1 | P.1 | 0.000016 |
ORF1ab/nsp3 | 1069 | V1069V | gtT | gtC | 1 | 1 | P.1.14 | 0.000048 |
ORF1ab/nsp3 | 1069 | V1069I | Gtt | Att | 1 | 1 | P.1.7 | 0.000319 |
ORF1ab/nsp3 | 1069 | V1069A | gTt | gCt | 1 | 1 | P.1.7 | 0.000319 |
ORF1ab/nsp3 | 1069 | V1069I | Gtt | Att | 1 | 1 | Q.1 | 0.000126 |
ORF1ab/nsp3 | 1069 | V1069del1 | Gtt | -tt | 1 | 1 | Q.3 | 0.000145 |
CoV-GLUE is still in development. CoV-GLUE was originally developed as part of COG-UK by Josh Singer using the GLUE framework at the MRC-University of Glasgow Centre for Virus Research (CVR). In 2021 it was redeveloped by Richard Orton to scale to the millions of genome sequences available. We acknowledge support from the MRC (MC_UU_12014/12), WT (220977/Z/20/Z) and UKRI G2P (MR/W005611/1). Please contact Richard Orton with any queries: Richard.Orton@glasgow.ac.uk
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