CoV-GLUE | Mutations | Mutation

CoV-GLUE Mutation: ORF = ORF1ab/nsp3 : CodonNum = 1063

Details of the codons used for the mutation across all lineages (CodonProp is the proportion each codon is used for this AA mutation):

ORFCodonNumMutORF1abMutMutTypeRefCodonMutCodonAACountCodonCountCodonPropGenome Position
ORF1ab/nsp31063T1063IT1881InonsynaCtaTt9017901715906-5908
ORF1ab/nsp31063T1063TT1881TsynacTacC2171990.9170515906-5908
ORF1ab/nsp31063T1063TT1881TsynacTacG21790.04147475906-5908
ORF1ab/nsp31063T1063TT1881TsynacTacA21790.04147475906-5908
ORF1ab/nsp31063T1063AT1881AnonsynActGct606015906-5908
ORF1ab/nsp31063T1063NT1881NnonsynaCtaAt36340.9444445906-5908
ORF1ab/nsp31063T1063NT1881NnonsynaCTaAC3620.05555565906-5908
ORF1ab/nsp31063T1063delT1881deldelACT---303015906-5908
ORF1ab/nsp31063T1063ST1881SnonsynActTct1870.3888895906-5908
ORF1ab/nsp31063T1063ST1881SnonsynaCtaGt1860.3333335906-5908
ORF1ab/nsp31063T1063ST1881SnonsynAcTTcC1830.1666675906-5908
ORF1ab/nsp31063T1063ST1881SnonsynAcTTcA1820.1111115906-5908
ORF1ab/nsp31063T1063KT1881KnonsynaCTaAA540.85906-5908
ORF1ab/nsp31063T1063YT1881YnonsynACtTAt530.65906-5908
ORF1ab/nsp31063T1063YT1881YnonsynACTTAC520.45906-5908
ORF1ab/nsp31063T1063KT1881KnonsynaCTaAG510.25906-5908
ORF1ab/nsp31063T1063XT1881XnonsynACTTAA2215906-5908
ORF1ab/nsp31063T1063del1T1881del1delAct-ct210.55906-5908
ORF1ab/nsp31063T1063del1T1881del1delacTac-210.55906-5908
ORF1ab/nsp31063T1063FT1881FnonsynACTTTC1115906-5908
ORF1ab/nsp31063T1063LT1881LnonsynACtCTt1115906-5908
ORF1ab/nsp31063T1063PT1881PnonsynAcTCcC1115906-5908
ORF1ab/nsp31063T1063del2T1881del2delACt--t1115906-5908

Details of the mutation no within lineages (LineageCodonProp is the proportion the codon is observed at, at this particular site, on each lineage):

ORFCodonNumMutRefCodonMutCodonCodonCountAACountLineageLineageCodonProp
ORF1ab/nsp31063T1063IaCtaTt90179017All0.001725
ORF1ab/nsp31063T1063IaCtaTt22842284B.1.1.70.002045
ORF1ab/nsp31063T1063IaCtaTt16191619B.1.214.20.970624
ORF1ab/nsp31063T1063IaCtaTt595595B.1.617.20.00224
ORF1ab/nsp31063T1063IaCtaTt403403AY.39.10.015964
ORF1ab/nsp31063T1063IaCtaTt248248A.210.686981
ORF1ab/nsp31063T1063IaCtaTt248248AY.40.000386
ORF1ab/nsp31063T1063IaCtaTt229229B.1.1.1860.786942
ORF1ab/nsp31063T1063TacTacC199217All0.000038
ORF1ab/nsp31063T1063TacTacG9217All0.000002
ORF1ab/nsp31063T1063TacTacA9217All0.000002
ORF1ab/nsp31063T1063IaCtaTt175175AY.1030.001087
ORF1ab/nsp31063T1063IaCtaTt142142B.10.001301
ORF1ab/nsp31063T1063IaCtaTt133133B.1.214.30.95
ORF1ab/nsp31063T1063IaCtaTt126126B.1.1.1380.763636
ORF1ab/nsp31063T1063IaCtaTt110110B.1.20.000969
ORF1ab/nsp31063T1063IaCtaTt110110B.1.214.41
ORF1ab/nsp31063T1063IaCtaTt109109B.1.6360.731544
ORF1ab/nsp31063T1063IaCtaTt9898AY.250.000589
ORF1ab/nsp31063T1063IaCtaTt9797AY.1020.002572
ORF1ab/nsp31063T1063IaCtaTt9696P.10.001512
ORF1ab/nsp31063T1063IaCtaTt9090B.1.2140.32967
ORF1ab/nsp31063T1063IaCtaTt8888AY.430.00039
ORF1ab/nsp31063T1063IaCtaTt8383B.1.1.3480.066083
ORF1ab/nsp31063T1063IaCtaTt7979AY.440.000481
ORF1ab/nsp31063T1063IaCtaTt7474AY.30.000736
ORF1ab/nsp31063T1063IaCtaTt6666B.1.1770.000869
ORF1ab/nsp31063T1063IaCtaTt6565AY.750.003641
ORF1ab/nsp31063T1063IaCtaTt6464B.1.2580.004259
ORF1ab/nsp31063T1063AActGct6060All0.000011
ORF1ab/nsp31063T1063IaCtaTt5353AY.390.00131
ORF1ab/nsp31063T1063IaCtaTt4848AY.420.001931
ORF1ab/nsp31063T1063IaCtaTt4848B.1.617.10.00619
ORF1ab/nsp31063T1063IaCtaTt4747AY.470.001462
ORF1ab/nsp31063T1063IaCtaTt4747B.1.10.000853
ORF1ab/nsp31063T1063IaCtaTt4646B.1.214.10.92
ORF1ab/nsp31063T1063IaCtaTt4545B.1.258.170.004679
ORF1ab/nsp31063T1063IaCtaTt4343AY.990.045121
ORF1ab/nsp31063T1063TacTacC4141B.1.20.000361
ORF1ab/nsp31063T1063NaCtaAt3436All0.000007
ORF1ab/nsp31063T1063NaCTaAC236All0
ORF1ab/nsp31063T1063IaCtaTt3535B.1.3510.00104
ORF1ab/nsp31063T1063IaCtaTt3333B.1.1600.001029
ORF1ab/nsp31063T1063delACT---3030All0.000006
ORF1ab/nsp31063T1063IaCtaTt2828B.1.177.860.005137
ORF1ab/nsp31063T1063IaCtaTt2727B.1.2050.642857
ORF1ab/nsp31063T1063IaCtaTt2727B.1.36.360.016255
ORF1ab/nsp31063T1063IaCtaTt2525AY.50.000516
ORF1ab/nsp31063T1063IaCtaTt2525B.1.1.3170.010292
ORF1ab/nsp31063T1063IaCtaTt2424A.23.10.016901
ORF1ab/nsp31063T1063IaCtaTt2424AY.1000.001104
ORF1ab/nsp31063T1063TacTacC2424AY.40.000037
ORF1ab/nsp31063T1063IaCtaTt2323B.1.2430.0016
ORF1ab/nsp31063T1063IaCtaTt2222AY.230.001534
ORF1ab/nsp31063T1063IaCtaTt2222B.1.4290.000518
ORF1ab/nsp31063T1063IaCtaTt2020AY.1060.006698
ORF1ab/nsp31063T1063IaCtaTt1919AY.1130.002705
ORF1ab/nsp31063T1063IaCtaTt1919B.1.177.600.00415
ORF1ab/nsp31063T1063SActTct718All0.000001
ORF1ab/nsp31063T1063SaCtaGt618All0.000001
ORF1ab/nsp31063T1063SAcTTcC318All0.000001
ORF1ab/nsp31063T1063SAcTTcA218All0
ORF1ab/nsp31063T1063IaCtaTt1818AY.330.001202
ORF1ab/nsp31063T1063IaCtaTt1818B.1.2210.001279
ORF1ab/nsp31063T1063IaCtaTt1818B.1.3570.171429
ORF1ab/nsp31063T1063TacTacC1617B.1.10.00029
ORF1ab/nsp31063T1063TacTacA117B.1.10.000018
ORF1ab/nsp31063T1063IaCtaTt1616AY.260.000453
ORF1ab/nsp31063T1063IaCtaTt1616B.1.1.280.00498
ORF1ab/nsp31063T1063IaCtaTt1515B.1.575.10.036585
ORF1ab/nsp31063T1063TacTacC1515B.1.6090.007191
ORF1ab/nsp31063T1063TacTacC1414B.10.000128
ORF1ab/nsp31063T1063IaCtaTt1414B.1.1.3180.004225
ORF1ab/nsp31063T1063AActGct1414B.1.1.70.000013
ORF1ab/nsp31063T1063IaCtaTt1414B.1.2100.029851
ORF1ab/nsp31063T1063IaCtaTt1313A0.005031
ORF1ab/nsp31063T1063IaCtaTt1313AY.1140.003004
ORF1ab/nsp31063T1063IaCtaTt1313AY.200.000505
ORF1ab/nsp31063T1063IaCtaTt1313B.1.1.2140.000721
ORF1ab/nsp31063T1063TacTacC1212AY.30.000119
ORF1ab/nsp31063T1063IaCtaTt1212AY.980.000948
ORF1ab/nsp31063T1063IaCtaTt1212B.1.5510.015484
ORF1ab/nsp31063T1063IaCtaTt1111AY.1200.000409
ORF1ab/nsp31063T1063IaCtaTt1111AY.290.000174
ORF1ab/nsp31063T1063IaCtaTt1111AY.460.001145
ORF1ab/nsp31063T1063IaCtaTt1111AY.850.004699
ORF1ab/nsp31063T1063IaCtaTt1111AY.99.20.001014
ORF1ab/nsp31063T1063IaCtaTt1111B.1.177.440.005708
ORF1ab/nsp31063T1063IaCtaTt1111P.20.002053
ORF1ab/nsp31063T1063IaCtaTt1111Q.80.001814
ORF1ab/nsp31063T1063TacTacC810B.1.1.70.000007
ORF1ab/nsp31063T1063TacTacG210B.1.1.70.000002
ORF1ab/nsp31063T1063IaCtaTt1010B.1.6210.000885
ORF1ab/nsp31063T1063IaCtaTt99AY.1100.001014
ORF1ab/nsp31063T1063AActGct99AY.290.000142
ORF1ab/nsp31063T1063IaCtaTt99B.1.1.3110.003223
ORF1ab/nsp31063T1063IaCtaTt99B.1.3130.059211
ORF1ab/nsp31063T1063IaCtaTt99B.1.360.001313
ORF1ab/nsp31063T1063IaCtaTt99P.1.160.003367
ORF1ab/nsp31063T1063IaCtaTt88AY.1180.000501
ORF1ab/nsp31063T1063TacTacC88B.1.177.440.004152
ORF1ab/nsp31063T1063IaCtaTt88B.1.2360.016427
ORF1ab/nsp31063T1063IaCtaTt88B.1.36.290.004139
ORF1ab/nsp31063T1063IaCtaTt88B.1.4090.00625
ORF1ab/nsp31063T1063IaCtaTt88C.140.034632
ORF1ab/nsp31063T1063IaCtaTt88P.1.150.001859
ORF1ab/nsp31063T1063IaCtaTt77AY.1170.000592
ORF1ab/nsp31063T1063AActGct77AY.1180.000439
ORF1ab/nsp31063T1063IaCtaTt77AY.610.000733
ORF1ab/nsp31063T1063IaCtaTt77AY.75.10.001262
ORF1ab/nsp31063T1063IaCtaTt77B.1.3610.009021
ORF1ab/nsp31063T1063IaCtaTt77B.1.5650.005673
ORF1ab/nsp31063T1063IaCtaTt77B.1.5960.00061
ORF1ab/nsp31063T1063IaCtaTt77B.1.6280.002467
ORF1ab/nsp31063T1063IaCtaTt77B.3.10.011609
ORF1ab/nsp31063T1063IaCtaTt77R.10.00063
ORF1ab/nsp31063T1063NaCtaAt460.222222
ORF1ab/nsp31063T1063NaCTaAC260.111111
ORF1ab/nsp31063T1063TacTacC66AY.1020.000159
ORF1ab/nsp31063T1063AActGct66AY.30.00006
ORF1ab/nsp31063T1063AActGct66AY.40.000009
ORF1ab/nsp31063T1063TacTacC66AY.430.000027
ORF1ab/nsp31063T1063IaCtaTt66AY.60.000247
ORF1ab/nsp31063T1063IaCtaTt66AY.9.20.00022
ORF1ab/nsp31063T1063IaCtaTt66B0.000767
ORF1ab/nsp31063T1063IaCtaTt66B.1.1.4870.03352
ORF1ab/nsp31063T1063IaCtaTt66B.1.1.5190.000238
ORF1ab/nsp31063T1063NaCtaAt66B.1.1.70.000005
ORF1ab/nsp31063T1063IaCtaTt66B.1.1470.004535
ORF1ab/nsp31063T1063IaCtaTt66B.1.177.870.004367
ORF1ab/nsp31063T1063IaCtaTt66B.1.5260.000141
ORF1ab/nsp31063T1063IaCtaTt66B.1.6090.002876
ORF1ab/nsp31063T1063IaCtaTt66C.370.000696
ORF1ab/nsp31063T1063IaCtaTt66P.1.120.002904
ORF1ab/nsp31063T1063IaCtaTt66P.1.170.000971
ORF1ab/nsp31063T1063IaCtaTt66Q.10.000758
ORF1ab/nsp31063T1063SAcTTcC250.111111
ORF1ab/nsp31063T1063SActTct250.111111
ORF1ab/nsp31063T1063SAcTTcA150.055556
ORF1ab/nsp31063T1063KaCTaAA45All0.000001
ORF1ab/nsp31063T1063YACtTAt35All0.000001
ORF1ab/nsp31063T1063YACTTAC25All0
ORF1ab/nsp31063T1063KaCTaAG15All0
ORF1ab/nsp31063T1063delACT---55AY.4.20.000108
ORF1ab/nsp31063T1063IaCtaTt55AY.450.000608
ORF1ab/nsp31063T1063IaCtaTt55AY.5.20.012315
ORF1ab/nsp31063T1063IaCtaTt55AY.540.000477
ORF1ab/nsp31063T1063IaCtaTt55AY.690.000933
ORF1ab/nsp31063T1063IaCtaTt55B.1.1.3720.003444
ORF1ab/nsp31063T1063IaCtaTt55B.1.177.730.002831
ORF1ab/nsp31063T1063IaCtaTt55B.1.4270.000252
ORF1ab/nsp31063T1063IaCtaTt55P.1.140.000239
ORF1ab/nsp31063T1063IaCtaTt55P.70.021834
ORF1ab/nsp31063T1063TacTacC240.111111
ORF1ab/nsp31063T1063YACTTAC240.111111
ORF1ab/nsp31063T1063YACtTAt240.111111
ORF1ab/nsp31063T1063TacTacA240.111111
ORF1ab/nsp31063T1063IaCtaTt44AE.80.001956
ORF1ab/nsp31063T1063IaCtaTt44AY.1160.001147
ORF1ab/nsp31063T1063IaCtaTt44AY.1210.000541
ORF1ab/nsp31063T1063TacTacC44AY.250.000024
ORF1ab/nsp31063T1063IaCtaTt44AY.340.000388
ORF1ab/nsp31063T1063IaCtaTt44AY.370.001264
ORF1ab/nsp31063T1063AActGct44AY.390.000099
ORF1ab/nsp31063T1063AActGct44AY.60.000165
ORF1ab/nsp31063T1063IaCtaTt44AY.710.0019
ORF1ab/nsp31063T1063IaCtaTt44B.1.1.2840.00043
ORF1ab/nsp31063T1063IaCtaTt44B.1.1.500.002716
ORF1ab/nsp31063T1063IaCtaTt44B.1.177.120.000607
ORF1ab/nsp31063T1063IaCtaTt44B.1.177.200.00607
ORF1ab/nsp31063T1063IaCtaTt44B.1.177.70.000659
ORF1ab/nsp31063T1063IaCtaTt44B.1.258.110.001585
ORF1ab/nsp31063T1063IaCtaTt44B.1.3110.001098
ORF1ab/nsp31063T1063IaCtaTt44B.1.5250.000453
ORF1ab/nsp31063T1063IaCtaTt44B.1.5870.00759
ORF1ab/nsp31063T1063IaCtaTt44Q.70.004444
ORF1ab/nsp31063T1063TacTacC44R.10.00036
ORF1ab/nsp31063T1063IaCtaTt33AY.1190.000106
ORF1ab/nsp31063T1063NaCtaAt33AY.40.000005
ORF1ab/nsp31063T1063TacTacC33AY.400.002893
ORF1ab/nsp31063T1063IaCtaTt33AY.98.10.000145
ORF1ab/nsp31063T1063IaCtaTt33AZ.10.002602
ORF1ab/nsp31063T1063IaCtaTt33B.1.1.1630.022901
ORF1ab/nsp31063T1063IaCtaTt33B.1.1.2220.000612
ORF1ab/nsp31063T1063TacTacC33B.1.1.280.000934
ORF1ab/nsp31063T1063IaCtaTt33B.1.1.3160.002775
ORF1ab/nsp31063T1063IaCtaTt33B.1.2340.000396
ORF1ab/nsp31063T1063IaCtaTt33B.1.2400.000647
ORF1ab/nsp31063T1063TacTacC33B.1.3510.000089
ORF1ab/nsp31063T1063TacTacC33B.1.360.000438
ORF1ab/nsp31063T1063IaCtaTt33B.1.36.80.003
ORF1ab/nsp31063T1063IaCtaTt33B.1.3690.000856
ORF1ab/nsp31063T1063IaCtaTt33B.1.4330.009585
ORF1ab/nsp31063T1063IaCtaTt33B.1.4590.012245
ORF1ab/nsp31063T1063TacTacA23B.1.617.20.000008
ORF1ab/nsp31063T1063TacTacC13B.1.617.20.000004
ORF1ab/nsp31063T1063KaCTaAA220.111111
ORF1ab/nsp31063T1063IaCtaTt22A.280.005291
ORF1ab/nsp31063T1063TacTacG22AE.80.000978
ORF1ab/nsp31063T1063XACTTAA22All0
ORF1ab/nsp31063T1063del1acTac-12All0
ORF1ab/nsp31063T1063del1Act-ct12All0
ORF1ab/nsp31063T1063TacTacC22AY.1000.000092
ORF1ab/nsp31063T1063SaCtaGt22AY.1010.000981
ORF1ab/nsp31063T1063NaCtaAt22AY.1030.000012
ORF1ab/nsp31063T1063AActGct22AY.1200.000074
ORF1ab/nsp31063T1063IaCtaTt22AY.130.000322
ORF1ab/nsp31063T1063AActGct22AY.250.000012
ORF1ab/nsp31063T1063IaCtaTt22AY.270.000129
ORF1ab/nsp31063T1063TacTacC22AY.290.000032
ORF1ab/nsp31063T1063delACT---22AY.30.00002
ORF1ab/nsp31063T1063IaCtaTt22AY.3.10.000171
ORF1ab/nsp31063T1063SaCtaGt22AY.330.000134
ORF1ab/nsp31063T1063TacTacC22AY.390.000049
ORF1ab/nsp31063T1063IaCtaTt22AY.4.20.000043
ORF1ab/nsp31063T1063IaCtaTt22AY.4.2.10.000298
ORF1ab/nsp31063T1063IaCtaTt22AY.46.60.000144
ORF1ab/nsp31063T1063IaCtaTt22AY.5.30.000675
ORF1ab/nsp31063T1063delACT---22AY.610.00021
ORF1ab/nsp31063T1063IaCtaTt22AY.620.000871
ORF1ab/nsp31063T1063IaCtaTt22AY.740.000231
ORF1ab/nsp31063T1063IaCtaTt22AY.800.002257
ORF1ab/nsp31063T1063IaCtaTt22AY.870.001665
ORF1ab/nsp31063T1063delACT---22B.10.000018
ORF1ab/nsp31063T1063NaCtaAt22B.1.10.000036
ORF1ab/nsp31063T1063SActTct12B.1.10.000018
ORF1ab/nsp31063T1063SAcTTcA12B.1.10.000018
ORF1ab/nsp31063T1063IaCtaTt22B.1.1.2910.001485
ORF1ab/nsp31063T1063IaCtaTt22B.1.1.3040.005618
ORF1ab/nsp31063T1063IaCtaTt22B.1.1.3260.003521
ORF1ab/nsp31063T1063IaCtaTt22B.1.1.4340.000697
ORF1ab/nsp31063T1063IaCtaTt22B.1.1.630.000772
ORF1ab/nsp31063T1063delACT---22B.1.1.70.000002
ORF1ab/nsp31063T1063IaCtaTt22B.1.1280.001271
ORF1ab/nsp31063T1063IaCtaTt22B.1.1580.047619
ORF1ab/nsp31063T1063IaCtaTt22B.1.177.670.015267
ORF1ab/nsp31063T1063IaCtaTt22B.1.177.840.013333
ORF1ab/nsp31063T1063IaCtaTt22B.1.3290.001215
ORF1ab/nsp31063T1063delACT---22B.1.360.000292
ORF1ab/nsp31063T1063TacTacC22B.1.5250.000226
ORF1ab/nsp31063T1063IaCtaTt22B.1.5560.015038
ORF1ab/nsp31063T1063NaCtaAt22B.1.5750.000607
ORF1ab/nsp31063T1063TacTacG22B.1.5950.000522
ORF1ab/nsp31063T1063delACT---22B.1.617.20.000008
ORF1ab/nsp31063T1063NaCtaAt22B.1.617.20.000008
ORF1ab/nsp31063T1063IaCtaTt22B.1.930.001867
ORF1ab/nsp31063T1063SActTct12C.60.037037
ORF1ab/nsp31063T1063SAcTTcC12C.60.037037
ORF1ab/nsp31063T1063IaCtaTt22D.20.00015
ORF1ab/nsp31063T1063TacTacA12P.10.000016
ORF1ab/nsp31063T1063TacTacC12P.10.000016
ORF1ab/nsp31063T1063IaCtaTt22P.1.40.001953
ORF1ab/nsp31063T1063IaCtaTt22P.1.70.000639
ORF1ab/nsp31063T1063IaCtaTt110.055556
ORF1ab/nsp31063T1063XACTTAA110.055556
ORF1ab/nsp31063T1063AActGct11A.10.000282
ORF1ab/nsp31063T1063IaCtaTt11A.2.50.000499
ORF1ab/nsp31063T1063IaCtaTt11A.30.002096
ORF1ab/nsp31063T1063IaCtaTt11AE.10.011364
ORF1ab/nsp31063T1063FACTTTC11All0
ORF1ab/nsp31063T1063del2ACt--t11All0
ORF1ab/nsp31063T1063LACtCTt11All0
ORF1ab/nsp31063T1063PAcTCcC11All0
ORF1ab/nsp31063T1063delACT---11AY.1010.00049
ORF1ab/nsp31063T1063AActGct11AY.1030.000006
ORF1ab/nsp31063T1063delACT---11AY.1030.000006
ORF1ab/nsp31063T1063IaCtaTt11AY.1080.001103
ORF1ab/nsp31063T1063IaCtaTt11AY.110.001339
ORF1ab/nsp31063T1063NaCtaAt11AY.1100.000113
ORF1ab/nsp31063T1063TacTacC11AY.116.10.000311
ORF1ab/nsp31063T1063delACT---11AY.1200.000037
ORF1ab/nsp31063T1063IaCtaTt11AY.140.000088
ORF1ab/nsp31063T1063IaCtaTt11AY.16.10.00047
ORF1ab/nsp31063T1063TacTacC11AY.20.000356
ORF1ab/nsp31063T1063TacTacC11AY.200.000039
ORF1ab/nsp31063T1063TacTacA11AY.230.00007
ORF1ab/nsp31063T1063IaCtaTt11AY.240.000431
ORF1ab/nsp31063T1063delACT---11AY.250.000006
ORF1ab/nsp31063T1063NaCtaAt11AY.250.000006
ORF1ab/nsp31063T1063SaCtaGt11AY.270.000065
ORF1ab/nsp31063T1063IaCtaTt11AY.29.10.000221
ORF1ab/nsp31063T1063IaCtaTt11AY.320.000532
ORF1ab/nsp31063T1063IaCtaTt11AY.350.000233
ORF1ab/nsp31063T1063delACT---11AY.360.000148
ORF1ab/nsp31063T1063NaCtaAt11AY.4.10.000737
ORF1ab/nsp31063T1063delACT---11AY.4.30.000842
ORF1ab/nsp31063T1063IaCtaTt11AY.4.50.000107
ORF1ab/nsp31063T1063TacTacC11AY.420.00004
ORF1ab/nsp31063T1063AActGct11AY.430.000004
ORF1ab/nsp31063T1063NaCtaAt11AY.430.000004
ORF1ab/nsp31063T1063AActGct11AY.440.000006
ORF1ab/nsp31063T1063del2ACt--t11AY.440.000006
ORF1ab/nsp31063T1063TacTacC11AY.460.000104
ORF1ab/nsp31063T1063IaCtaTt11AY.46.20.000635
ORF1ab/nsp31063T1063TacTacC11AY.46.20.000635
ORF1ab/nsp31063T1063NaCtaAt11AY.470.000031
ORF1ab/nsp31063T1063IaCtaTt11AY.480.000465
ORF1ab/nsp31063T1063IaCtaTt11AY.490.003195
ORF1ab/nsp31063T1063IaCtaTt11AY.5.40.000277
ORF1ab/nsp31063T1063IaCtaTt11AY.590.00053
ORF1ab/nsp31063T1063IaCtaTt11AY.650.000533
ORF1ab/nsp31063T1063TacTacC11AY.690.000187
ORF1ab/nsp31063T1063IaCtaTt11AY.700.000209
ORF1ab/nsp31063T1063delACT---11AY.750.000056
ORF1ab/nsp31063T1063delACT---11AY.850.000427
ORF1ab/nsp31063T1063IaCtaTt11AY.90.000068
ORF1ab/nsp31063T1063IaCtaTt11AY.9.10.000084
ORF1ab/nsp31063T1063IaCtaTt11AY.920.000287
ORF1ab/nsp31063T1063AActGct11AY.930.000273
ORF1ab/nsp31063T1063IaCtaTt11AY.940.000443
ORF1ab/nsp31063T1063IaCtaTt11AZ.20.000821
ORF1ab/nsp31063T1063IaCtaTt11AZ.30.00152
ORF1ab/nsp31063T1063IaCtaTt11AZ.50.003509
ORF1ab/nsp31063T1063SActTct11B0.000128
ORF1ab/nsp31063T1063KaCTaAA11B.1.10.000018
ORF1ab/nsp31063T1063XACTTAA11B.1.10.000018
ORF1ab/nsp31063T1063AActGct11B.1.10.000018
ORF1ab/nsp31063T1063YACtTAt11B.1.10.000018
ORF1ab/nsp31063T1063IaCtaTt11B.1.1.10.000327
ORF1ab/nsp31063T1063TacTacC11B.1.1.100.001115
ORF1ab/nsp31063T1063delACT---11B.1.1.100.001115
ORF1ab/nsp31063T1063IaCtaTt11B.1.1.1590.004673
ORF1ab/nsp31063T1063IaCtaTt11B.1.1.1640.005155
ORF1ab/nsp31063T1063TacTacC11B.1.1.2070.001182
ORF1ab/nsp31063T1063IaCtaTt11B.1.1.2070.001182
ORF1ab/nsp31063T1063IaCtaTt11B.1.1.2160.00089
ORF1ab/nsp31063T1063IaCtaTt11B.1.1.2400.004695
ORF1ab/nsp31063T1063IaCtaTt11B.1.1.2410.00207
ORF1ab/nsp31063T1063IaCtaTt11B.1.1.2430.004082
ORF1ab/nsp31063T1063IaCtaTt11B.1.1.2530.002506
ORF1ab/nsp31063T1063IaCtaTt11B.1.1.2630.001558
ORF1ab/nsp31063T1063KaCTaAA11B.1.1.2790.001121
ORF1ab/nsp31063T1063IaCtaTt11B.1.1.3060.000438
ORF1ab/nsp31063T1063IaCtaTt11B.1.1.3360.016667
ORF1ab/nsp31063T1063IaCtaTt11B.1.1.3760.005952
ORF1ab/nsp31063T1063IaCtaTt11B.1.1.400.034483
ORF1ab/nsp31063T1063IaCtaTt11B.1.1.4090.002833
ORF1ab/nsp31063T1063IaCtaTt11B.1.1.4480.002033
ORF1ab/nsp31063T1063IaCtaTt11B.1.1.4860.001577
ORF1ab/nsp31063T1063IaCtaTt11B.1.1.5230.001563
ORF1ab/nsp31063T1063IaCtaTt11B.1.1.5280.004808
ORF1ab/nsp31063T1063IaCtaTt11B.1.1.620.027027
ORF1ab/nsp31063T1063PAcTCcC11B.1.1.630.000386
ORF1ab/nsp31063T1063SActTct11B.1.1.70.000001
ORF1ab/nsp31063T1063IaCtaTt11B.1.1.700.000341
ORF1ab/nsp31063T1063IaCtaTt11B.1.1.890.006061
ORF1ab/nsp31063T1063IaCtaTt11B.1.1040.00369
ORF1ab/nsp31063T1063TacTacC11B.1.1600.000031
ORF1ab/nsp31063T1063IaCtaTt11B.1.160.220.006757
ORF1ab/nsp31063T1063IaCtaTt11B.1.160.280.002924
ORF1ab/nsp31063T1063NaCtaAt11B.1.1770.000013
ORF1ab/nsp31063T1063IaCtaTt11B.1.177.150.000631
ORF1ab/nsp31063T1063IaCtaTt11B.1.177.210.000076
ORF1ab/nsp31063T1063IaCtaTt11B.1.177.330.001645
ORF1ab/nsp31063T1063IaCtaTt11B.1.177.40.000211
ORF1ab/nsp31063T1063del1acTac-11B.1.177.430.001477
ORF1ab/nsp31063T1063TacTacG11B.1.177.450.000381
ORF1ab/nsp31063T1063IaCtaTt11B.1.177.480.003125
ORF1ab/nsp31063T1063IaCtaTt11B.1.177.560.000668
ORF1ab/nsp31063T1063IaCtaTt11B.1.177.570.000281
ORF1ab/nsp31063T1063IaCtaTt11B.1.177.620.001192
ORF1ab/nsp31063T1063NaCtaAt11B.1.177.730.000566
ORF1ab/nsp31063T1063IaCtaTt11B.1.177.810.000189
ORF1ab/nsp31063T1063IaCtaTt11B.1.177.820.000477
ORF1ab/nsp31063T1063IaCtaTt11B.1.177.830.001481
ORF1ab/nsp31063T1063IaCtaTt11B.1.1780.02381
ORF1ab/nsp31063T1063IaCtaTt11B.1.1790.003759
ORF1ab/nsp31063T1063IaCtaTt11B.1.1880.016667
ORF1ab/nsp31063T1063NaCtaAt11B.1.20.000009
ORF1ab/nsp31063T1063delACT---11B.1.20.000009
ORF1ab/nsp31063T1063NaCtaAt11B.1.2210.000071
ORF1ab/nsp31063T1063IaCtaTt11B.1.221.40.004167
ORF1ab/nsp31063T1063IaCtaTt11B.1.2320.000537
ORF1ab/nsp31063T1063TacTacC11B.1.2340.000132
ORF1ab/nsp31063T1063SaCtaGt11B.1.2340.000132
ORF1ab/nsp31063T1063FACTTTC11B.1.2580.000067
ORF1ab/nsp31063T1063IaCtaTt11B.1.2790.000514
ORF1ab/nsp31063T1063TacTacC11B.1.3360.002439
ORF1ab/nsp31063T1063IaCtaTt11B.1.3360.002439
ORF1ab/nsp31063T1063NaCtaAt11B.1.3510.00003
ORF1ab/nsp31063T1063NaCtaAt11B.1.360.000146
ORF1ab/nsp31063T1063IaCtaTt11B.1.36.310.001751
ORF1ab/nsp31063T1063delACT---11B.1.3620.001541
ORF1ab/nsp31063T1063IaCtaTt11B.1.3750.00082
ORF1ab/nsp31063T1063IaCtaTt11B.1.3800.006623
ORF1ab/nsp31063T1063IaCtaTt11B.1.4000.000429
ORF1ab/nsp31063T1063IaCtaTt11B.1.4040.001302
ORF1ab/nsp31063T1063IaCtaTt11B.1.416.10.001563
ORF1ab/nsp31063T1063IaCtaTt11B.1.4220.000812
ORF1ab/nsp31063T1063NaCtaAt11B.1.4290.000024
ORF1ab/nsp31063T1063TacTacG11B.1.4380.006536
ORF1ab/nsp31063T1063IaCtaTt11B.1.438.10.000107
ORF1ab/nsp31063T1063TacTacC11B.1.4560.003268
ORF1ab/nsp31063T1063TacTacC11B.1.466.20.000391
ORF1ab/nsp31063T1063IaCtaTt11B.1.466.20.000391
ORF1ab/nsp31063T1063IaCtaTt11B.1.4800.002488
ORF1ab/nsp31063T1063TacTacA11B.1.5260.000024
ORF1ab/nsp31063T1063IaCtaTt11B.1.5700.002941
ORF1ab/nsp31063T1063IaCtaTt11B.1.5750.000303
ORF1ab/nsp31063T1063IaCtaTt11B.1.5760.000907
ORF1ab/nsp31063T1063IaCtaTt11B.1.5770.000687
ORF1ab/nsp31063T1063TacTacA11B.1.5890.007576
ORF1ab/nsp31063T1063del1Act-ct11B.1.5900.004545
ORF1ab/nsp31063T1063KaCTaAG11B.1.5960.000087
ORF1ab/nsp31063T1063IaCtaTt11B.1.5980.016949
ORF1ab/nsp31063T1063SActTct11B.1.617.20.000004
ORF1ab/nsp31063T1063IaCtaTt11B.1.6180.004032
ORF1ab/nsp31063T1063IaCtaTt11B.1.621.10.000506
ORF1ab/nsp31063T1063IaCtaTt11B.1.6370.000073
ORF1ab/nsp31063T1063IaCtaTt11B.1.6390.021739
ORF1ab/nsp31063T1063delACT---11B.150.017544
ORF1ab/nsp31063T1063IaCtaTt11B.280.003279
ORF1ab/nsp31063T1063IaCtaTt11B.30.000831
ORF1ab/nsp31063T1063IaCtaTt11B.550.00295
ORF1ab/nsp31063T1063IaCtaTt11B.6.80.008264
ORF1ab/nsp31063T1063IaCtaTt11B.600.015873
ORF1ab/nsp31063T1063IaCtaTt11C.180.002591
ORF1ab/nsp31063T1063LACtCTt11C.350.000774
ORF1ab/nsp31063T1063IaCtaTt11C.360.000911
ORF1ab/nsp31063T1063TacTacC11C.60.037037
ORF1ab/nsp31063T1063NaCtaAt11D.20.000075
ORF1ab/nsp31063T1063IaCtaTt11D.50.004975
ORF1ab/nsp31063T1063IaCtaTt11N.90.005952
ORF1ab/nsp31063T1063delACT---11P.10.000016
ORF1ab/nsp31063T1063TacTacG11P.1.10.000318
ORF1ab/nsp31063T1063TacTacC11P.1.150.000232
ORF1ab/nsp31063T1063IaCtaTt11P.1.17.10.000875
ORF1ab/nsp31063T1063IaCtaTt11P.1.20.001156
ORF1ab/nsp31063T1063TacTacC11Q.30.000145