CoV-GLUE | Mutations | Mutation

CoV-GLUE Mutation: ORF = ORF1ab/nsp3 : CodonNum = 1060

Details of the codons used for the mutation across all lineages (CodonProp is the proportion each codon is used for this AA mutation):

ORFCodonNumMutORF1abMutMutTypeRefCodonMutCodonAACountCodonCountCodonPropGenome Position
ORF1ab/nsp31060K1060KK1878KsynaaAaaG34234215897-5899
ORF1ab/nsp31060K1060RK1878RnonsynaAaaGa12612615897-5899
ORF1ab/nsp31060K1060EK1878EnonsynAaaGaa272715897-5899
ORF1ab/nsp31060K1060delK1878deldelAAA---232315897-5899
ORF1ab/nsp31060K1060QK1878QnonsynAaaCaa131315897-5899
ORF1ab/nsp31060K1060NK1878NnonsynaaAaaC1050.55897-5899
ORF1ab/nsp31060K1060NK1878NnonsynaaAaaT1050.55897-5899
ORF1ab/nsp31060K1060IK1878InonsynaAaaTa870.8755897-5899
ORF1ab/nsp31060K1060IK1878InonsynaAAaTT810.1255897-5899
ORF1ab/nsp31060K1060TK1878TnonsynaAaaCa7715897-5899
ORF1ab/nsp31060K1060XK1878XnonsynAaaTaa4415897-5899
ORF1ab/nsp31060K1060DK1878DnonsynAaAGaT1115897-5899
ORF1ab/nsp31060K1060YK1878YnonsynAaATaC1115897-5899

Details of the mutation no within lineages (LineageCodonProp is the proportion the codon is observed at, at this particular site, on each lineage):

ORFCodonNumMutRefCodonMutCodonCodonCountAACountLineageLineageCodonProp
ORF1ab/nsp31060K1060KaaAaaG342342All0.000065
ORF1ab/nsp31060K1060RaAaaGa126126All0.000024
ORF1ab/nsp31060K1060KaaAaaG103103B.1.177.600.022499
ORF1ab/nsp31060K1060KaaAaaG4646B.1.5170.019641
ORF1ab/nsp31060K1060KaaAaaG4545B.1.1.70.00004
ORF1ab/nsp31060K1060RaAaaGa3939AY.200.001516
ORF1ab/nsp31060K1060EAaaGaa2727All0.000005
ORF1ab/nsp31060K1060KaaAaaG2626B.1.4290.000612
ORF1ab/nsp31060K1060delAAA---2323All0.000004
ORF1ab/nsp31060K1060KaaAaaG2222AY.250.000132
ORF1ab/nsp31060K1060KaaAaaG1919B.1.1.3241
ORF1ab/nsp31060K1060QAaaCaa1313All0.000002
ORF1ab/nsp31060K1060EAaaGaa1313B.1.1.70.000012
ORF1ab/nsp31060K1060RaAaaGa1313B.1.20.000114
ORF1ab/nsp31060K1060RaAaaGa1212L.30.042553
ORF1ab/nsp31060K1060KaaAaaG1111AY.440.000067
ORF1ab/nsp31060K1060NaaAaaC510All0.000001
ORF1ab/nsp31060K1060NaaAaaT510All0.000001
ORF1ab/nsp31060K1060KaaAaaG1010AY.40.000016
ORF1ab/nsp31060K1060IaAaaTa78All0.000001
ORF1ab/nsp31060K1060IaAAaTT18All0
ORF1ab/nsp31060K1060TaAaaCa77All0.000001
ORF1ab/nsp31060K1060KaaAaaG77B.1.10.000127
ORF1ab/nsp31060K1060KaaAaaG77P.10.00011
ORF1ab/nsp31060K1060RaAaaGa66AY.1100.000676
ORF1ab/nsp31060K1060RaAaaGa66B.1.1.70.000005
ORF1ab/nsp31060K1060delAAA---55B.1.1.70.000004
ORF1ab/nsp31060K1060QAaaCaa55B.1.1.70.000004
ORF1ab/nsp31060K1060RaAaaGa55P.10.000079
ORF1ab/nsp31060K1060XAaaTaa44All0.000001
ORF1ab/nsp31060K1060RaAaaGa44AY.60.000165
ORF1ab/nsp31060K1060QAaaCaa44AY.60.000165
ORF1ab/nsp31060K1060RaAaaGa44B.1.1770.000053
ORF1ab/nsp31060K1060KaaAaaG44B.1.1770.000053
ORF1ab/nsp31060K1060RaAaaGa44B.1.5260.000094
ORF1ab/nsp31060K1060KaaAaaG44B.1.617.20.000015
ORF1ab/nsp31060K1060RaAaaGa33AY.1030.000019
ORF1ab/nsp31060K1060KaaAaaG33AY.140.000264
ORF1ab/nsp31060K1060RaAaaGa33AY.3.10.000256
ORF1ab/nsp31060K1060EAaaGaa33AY.40.000005
ORF1ab/nsp31060K1060EAaaGaa33B.1.6210.000266
ORF1ab/nsp31060K1060NaaAaaT120.055556
ORF1ab/nsp31060K1060NaaAaaC120.055556
ORF1ab/nsp31060K1060IaAAaTT120.055556
ORF1ab/nsp31060K1060IaAaaTa120.055556
ORF1ab/nsp31060K1060KaaAaaG22AY.1020.000053
ORF1ab/nsp31060K1060KaaAaaG22AY.1030.000012
ORF1ab/nsp31060K1060RaAaaGa22AY.40.000003
ORF1ab/nsp31060K1060RaAaaGa22AY.440.000012
ORF1ab/nsp31060K1060delAAA---22AY.50.000041
ORF1ab/nsp31060K1060RaAaaGa22AY.99.20.000184
ORF1ab/nsp31060K1060KaaAaaG22B.10.000018
ORF1ab/nsp31060K1060NaaAaaC12B.10.000009
ORF1ab/nsp31060K1060NaaAaaT12B.10.000009
ORF1ab/nsp31060K1060QAaaCaa22B.1.10.000036
ORF1ab/nsp31060K1060KaaAaaG22B.1.1640.029851
ORF1ab/nsp31060K1060NaaAaaT22B.1.1770.000026
ORF1ab/nsp31060K1060KaaAaaG22B.1.3510.000059
ORF1ab/nsp31060K1060delAAA---22B.1.360.000292
ORF1ab/nsp31060K1060KaaAaaG22B.1.3690.00057
ORF1ab/nsp31060K1060KaaAaaG22B.1.4270.000101
ORF1ab/nsp31060K1060EAaaGaa22P.1.150.000465
ORF1ab/nsp31060K1060XAaaTaa110.055556
ORF1ab/nsp31060K1060YAaATaC110.055556
ORF1ab/nsp31060K1060EAaaGaa11A.50.001923
ORF1ab/nsp31060K1060DAaAGaT11All0
ORF1ab/nsp31060K1060YAaATaC11All0
ORF1ab/nsp31060K1060KaaAaaG11AY.1000.000046
ORF1ab/nsp31060K1060IaAaaTa11AY.1100.000113
ORF1ab/nsp31060K1060RaAaaGa11AY.1130.000142
ORF1ab/nsp31060K1060KaaAaaG11AY.1150.005208
ORF1ab/nsp31060K1060RaAaaGa11AY.1180.000063
ORF1ab/nsp31060K1060RaAaaGa11AY.1190.000035
ORF1ab/nsp31060K1060delAAA---11AY.1200.000037
ORF1ab/nsp31060K1060RaAaaGa11AY.1210.000135
ORF1ab/nsp31060K1060KaaAaaG11AY.130.000161
ORF1ab/nsp31060K1060RaAaaGa11AY.230.00007
ORF1ab/nsp31060K1060XAaaTaa11AY.250.000006
ORF1ab/nsp31060K1060KaaAaaG11AY.260.000028
ORF1ab/nsp31060K1060RaAaaGa11AY.270.000065
ORF1ab/nsp31060K1060delAAA---11AY.30.00001
ORF1ab/nsp31060K1060KaaAaaG11AY.30.00001
ORF1ab/nsp31060K1060RaAaaGa11AY.30.00001
ORF1ab/nsp31060K1060KaaAaaG11AY.34.10.00051
ORF1ab/nsp31060K1060TaAaaCa11AY.360.000148
ORF1ab/nsp31060K1060delAAA---11AY.360.000148
ORF1ab/nsp31060K1060QAaaCaa11AY.390.000025
ORF1ab/nsp31060K1060IaAaaTa11AY.40.000002
ORF1ab/nsp31060K1060TaAaaCa11AY.40.000002
ORF1ab/nsp31060K1060delAAA---11AY.4.20.000022
ORF1ab/nsp31060K1060delAAA---11AY.4.30.000842
ORF1ab/nsp31060K1060KaaAaaG11AY.420.00004
ORF1ab/nsp31060K1060KaaAaaG11AY.430.000004
ORF1ab/nsp31060K1060TaAaaCa11AY.430.000004
ORF1ab/nsp31060K1060NaaAaaC11AY.440.000006
ORF1ab/nsp31060K1060RaAaaGa11AY.470.000031
ORF1ab/nsp31060K1060KaaAaaG11AY.570.000656
ORF1ab/nsp31060K1060KaaAaaG11AY.60.000041
ORF1ab/nsp31060K1060RaAaaGa11AY.7.10.000113
ORF1ab/nsp31060K1060delAAA---11AY.750.000056
ORF1ab/nsp31060K1060EAaaGaa11AY.75.10.00018
ORF1ab/nsp31060K1060NaaAaaC11AY.75.10.00018
ORF1ab/nsp31060K1060delAAA---11AY.850.000427
ORF1ab/nsp31060K1060RaAaaGa11AY.9.20.000037
ORF1ab/nsp31060K1060IaAaaTa11B.10.000009
ORF1ab/nsp31060K1060TaAaaCa11B.10.000009
ORF1ab/nsp31060K1060RaAaaGa11B.10.000009
ORF1ab/nsp31060K1060EAaaGaa11B.10.000009
ORF1ab/nsp31060K1060EAaaGaa11B.1.10.000018
ORF1ab/nsp31060K1060TaAaaCa11B.1.10.000018
ORF1ab/nsp31060K1060XAaaTaa11B.1.10.000018
ORF1ab/nsp31060K1060RaAaaGa11B.1.1.2770.000759
ORF1ab/nsp31060K1060TaAaaCa11B.1.1.3060.000438
ORF1ab/nsp31060K1060KaaAaaG11B.1.1.330.000421
ORF1ab/nsp31060K1060KaaAaaG11B.1.1.3480.000796
ORF1ab/nsp31060K1060QAaaCaa11B.1.1.3720.000689
ORF1ab/nsp31060K1060delAAA---11B.1.1.630.000386
ORF1ab/nsp31060K1060IaAaaTa11B.1.1.70.000001
ORF1ab/nsp31060K1060TaAaaCa11B.1.1.70.000001
ORF1ab/nsp31060K1060RaAaaGa11B.1.177.230.003236
ORF1ab/nsp31060K1060RaAaaGa11B.1.177.730.000566
ORF1ab/nsp31060K1060KaaAaaG11B.1.177.770.000726
ORF1ab/nsp31060K1060RaAaaGa11B.1.177.870.000728
ORF1ab/nsp31060K1060delAAA---11B.1.20.000009
ORF1ab/nsp31060K1060RaAaaGa11B.1.2580.000067
ORF1ab/nsp31060K1060KaaAaaG11B.1.258.170.000104
ORF1ab/nsp31060K1060KaaAaaG11B.1.3110.000275
ORF1ab/nsp31060K1060EAaaGaa11B.1.3510.00003
ORF1ab/nsp31060K1060RaAaaGa11B.1.4090.000781
ORF1ab/nsp31060K1060RaAaaGa11B.1.4270.00005
ORF1ab/nsp31060K1060delAAA---11B.1.4290.000024
ORF1ab/nsp31060K1060IaAaaTa11B.1.4620.007246
ORF1ab/nsp31060K1060RaAaaGa11B.1.4620.007246
ORF1ab/nsp31060K1060KaaAaaG11B.1.5260.000024
ORF1ab/nsp31060K1060KaaAaaG11B.1.5540.004405
ORF1ab/nsp31060K1060RaAaaGa11B.1.5960.000087
ORF1ab/nsp31060K1060delAAA---11B.1.5960.000087
ORF1ab/nsp31060K1060KaaAaaG11B.1.617.10.000129
ORF1ab/nsp31060K1060delAAA---11B.1.617.20.000004
ORF1ab/nsp31060K1060NaaAaaT11B.1.6370.000073
ORF1ab/nsp31060K1060EAaaGaa11B.1.6370.000073
ORF1ab/nsp31060K1060delAAA---11B.150.017544
ORF1ab/nsp31060K1060DAaAGaT11C.350.000774
ORF1ab/nsp31060K1060RaAaaGa11D.20.000075
ORF1ab/nsp31060K1060IaAaaTa11D.20.000075
ORF1ab/nsp31060K1060XAaaTaa11D.20.000075
ORF1ab/nsp31060K1060NaaAaaC11D.20.000075
ORF1ab/nsp31060K1060delAAA---11P.10.000016
ORF1ab/nsp31060K1060KaaAaaG11P.1.120.000484
ORF1ab/nsp31060K1060KaaAaaG11R.10.00009
ORF1ab/nsp31060K1060KaaAaaG11U.20.008772