CoV-GLUE | Mutations | Mutation

CoV-GLUE Mutation: ORF = ORF1ab/nsp3 : CodonNum = 1058

Details of the codons used for the mutation across all lineages (CodonProp is the proportion each codon is used for this AA mutation):

ORFCodonNumMutORF1abMutMutTypeRefCodonMutCodonAACountCodonCountCodonPropGenome Position
ORF1ab/nsp31058T1058TT1876TsynacCacT104010040.9653855891-5893
ORF1ab/nsp31058T1058TT1876TsynacCacA1040350.03365385891-5893
ORF1ab/nsp31058T1058TT1876TsynacCacG104010.0009615385891-5893
ORF1ab/nsp31058T1058NT1876NnonsynaCcaAc5795780.9982735891-5893
ORF1ab/nsp31058T1058NT1876NnonsynaCCaAT57910.001727125891-5893
ORF1ab/nsp31058T1058AT1876AnonsynAccGcc5265250.9980995891-5893
ORF1ab/nsp31058T1058AT1876AnonsynAcCGcT52610.001901145891-5893
ORF1ab/nsp31058T1058IT1876InonsynaCcaTc4944890.9898795891-5893
ORF1ab/nsp31058T1058IT1876InonsynaCCaTT49450.01012155891-5893
ORF1ab/nsp31058T1058ST1876SnonsynaCcaGc1270.5833335891-5893
ORF1ab/nsp31058T1058ST1876SnonsynAccTcc1250.4166675891-5893
ORF1ab/nsp31058T1058delT1876deldelACC---111115891-5893
ORF1ab/nsp31058T1058PT1876PnonsynAccCcc3315891-5893
ORF1ab/nsp31058T1058KT1876KnonsynaCCaAA2215891-5893
ORF1ab/nsp31058T1058HT1876HnonsynACcCAc2215891-5893
ORF1ab/nsp31058T1058DT1876DnonsynACCGAT210.55891-5893
ORF1ab/nsp31058T1058DT1876DnonsynACcGAc210.55891-5893
ORF1ab/nsp31058T1058YT1876YnonsynACcTAc1115891-5893
ORF1ab/nsp31058T1058del1T1876del1delaCCaT-1115891-5893

Details of the mutation no within lineages (LineageCodonProp is the proportion the codon is observed at, at this particular site, on each lineage):

ORFCodonNumMutRefCodonMutCodonCodonCountAACountLineageLineageCodonProp
ORF1ab/nsp31058T1058TacCacT10041040All0.000192
ORF1ab/nsp31058T1058TacCacA351040All0.000007
ORF1ab/nsp31058T1058TacCacG11040All0
ORF1ab/nsp31058T1058NaCcaAc578579All0.000111
ORF1ab/nsp31058T1058NaCCaAT1579All0
ORF1ab/nsp31058T1058AAccGcc525526All0.0001
ORF1ab/nsp31058T1058AAcCGcT1526All0
ORF1ab/nsp31058T1058IaCcaTc489494All0.000094
ORF1ab/nsp31058T1058IaCCaTT5494All0.000001
ORF1ab/nsp31058T1058NaCcaAc453453AY.390.011194
ORF1ab/nsp31058T1058AAccGcc405405B.1.1.70.000363
ORF1ab/nsp31058T1058TacCacT260261B.1.1.70.000233
ORF1ab/nsp31058T1058TacCacA1261B.1.1.70.000001
ORF1ab/nsp31058T1058IaCcaTc190190B.1.1.70.00017
ORF1ab/nsp31058T1058TacCacT9393AY.290.001467
ORF1ab/nsp31058T1058TacCacT8383AY.1030.000515
ORF1ab/nsp31058T1058TacCacT6870AY.250.000409
ORF1ab/nsp31058T1058TacCacA270AY.250.000012
ORF1ab/nsp31058T1058TacCacT6467AY.440.00039
ORF1ab/nsp31058T1058TacCacA367AY.440.000018
ORF1ab/nsp31058T1058TacCacT5055B.1.617.20.000188
ORF1ab/nsp31058T1058TacCacA455B.1.617.20.000015
ORF1ab/nsp31058T1058TacCacG155B.1.617.20.000004
ORF1ab/nsp31058T1058TacCacT4343B.1.3690.012265
ORF1ab/nsp31058T1058AAccGcc4141AY.40.000064
ORF1ab/nsp31058T1058IaCcaTc3540C.370.004062
ORF1ab/nsp31058T1058IaCCaTT540C.370.00058
ORF1ab/nsp31058T1058AAccGcc3535AY.420.001408
ORF1ab/nsp31058T1058NaCcaAc3232B.1.617.20.00012
ORF1ab/nsp31058T1058IaCcaTc2929AY.40.000045
ORF1ab/nsp31058T1058TacCacT2728AY.40.000042
ORF1ab/nsp31058T1058TacCacA128AY.40.000002
ORF1ab/nsp31058T1058IaCcaTc2323AY.130.003703
ORF1ab/nsp31058T1058TacCacT2223B.1.1770.00029
ORF1ab/nsp31058T1058TacCacA123B.1.1770.000013
ORF1ab/nsp31058T1058TacCacT2020B.1.20.000176
ORF1ab/nsp31058T1058IaCcaTc2020B.1.617.20.000075
ORF1ab/nsp31058T1058NaCcaAc1717AY.40.000026
ORF1ab/nsp31058T1058TacCacT1717B.1.4910.894737
ORF1ab/nsp31058T1058TacCacT1717B.1.5950.004436
ORF1ab/nsp31058T1058TacCacT1316B.10.000119
ORF1ab/nsp31058T1058TacCacA316B.10.000027
ORF1ab/nsp31058T1058IaCcaTc1616B.1.1770.000211
ORF1ab/nsp31058T1058IaCcaTc1313AY.30.000129
ORF1ab/nsp31058T1058SaCcaGc712All0.000001
ORF1ab/nsp31058T1058SAccTcc512All0.000001
ORF1ab/nsp31058T1058IaCcaTc1212B.1.177.40.002533
ORF1ab/nsp31058T1058TacCacT1212C.370.001393
ORF1ab/nsp31058T1058delACC---1111All0.000002
ORF1ab/nsp31058T1058IaCcaTc1111AY.440.000067
ORF1ab/nsp31058T1058IaCcaTc1111B.1.5820.005397
ORF1ab/nsp31058T1058TacCacT610AY.430.000027
ORF1ab/nsp31058T1058TacCacA410AY.430.000018
ORF1ab/nsp31058T1058NaCcaAc99AY.440.000055
ORF1ab/nsp31058T1058TacCacT99B.1.10.000163
ORF1ab/nsp31058T1058TacCacT99B.1.2210.000639
ORF1ab/nsp31058T1058IaCcaTc88AY.1030.00005
ORF1ab/nsp31058T1058TacCacT88AY.1200.000297
ORF1ab/nsp31058T1058NaCcaAc88AY.30.00008
ORF1ab/nsp31058T1058TacCacA78AY.4.20.000152
ORF1ab/nsp31058T1058TacCacT18AY.4.20.000022
ORF1ab/nsp31058T1058IaCcaTc88B.1.10.000145
ORF1ab/nsp31058T1058TacCacT88N.40.034043
ORF1ab/nsp31058T1058AAccGcc77AY.250.000042
ORF1ab/nsp31058T1058TacCacT77AY.340.000679
ORF1ab/nsp31058T1058IaCcaTc77AY.60.000288
ORF1ab/nsp31058T1058TacCacT66AY.1000.000276
ORF1ab/nsp31058T1058IaCcaTc66AY.290.000095
ORF1ab/nsp31058T1058TacCacT66AY.30.00006
ORF1ab/nsp31058T1058TacCacT66AY.470.000187
ORF1ab/nsp31058T1058TacCacT66AY.670.002786
ORF1ab/nsp31058T1058IaCcaTc66B.10.000055
ORF1ab/nsp31058T1058NaCcaAc66B.1.1.70.000005
ORF1ab/nsp31058T1058AAccGcc66B.1.20.000053
ORF1ab/nsp31058T1058AAccGcc66B.1.5260.000141
ORF1ab/nsp31058T1058TacCacT66B.1.5610.002382
ORF1ab/nsp31058T1058IaCcaTc66P.10.000095
ORF1ab/nsp31058T1058NaCcaAc66P.10.000095
ORF1ab/nsp31058T1058IaCcaTc55AY.250.00003
ORF1ab/nsp31058T1058NaCcaAc55AY.340.000485
ORF1ab/nsp31058T1058NaCcaAc55AY.4.20.000108
ORF1ab/nsp31058T1058TacCacT55AY.50.000103
ORF1ab/nsp31058T1058TacCacT55B.1.1.5190.000199
ORF1ab/nsp31058T1058NaCcaAc55B.1.1.5190.000199
ORF1ab/nsp31058T1058TacCacT55B.1.1600.000156
ORF1ab/nsp31058T1058NaCcaAc340.166667
ORF1ab/nsp31058T1058NaCCaAT140.055556
ORF1ab/nsp31058T1058TacCacT44AE.80.001956
ORF1ab/nsp31058T1058IaCcaTc44AY.1010.001962
ORF1ab/nsp31058T1058IaCcaTc44AY.1040.007937
ORF1ab/nsp31058T1058TacCacT44AY.420.000161
ORF1ab/nsp31058T1058IaCcaTc44AY.750.000224
ORF1ab/nsp31058T1058TacCacT44B.1.1.2220.000816
ORF1ab/nsp31058T1058SaCcaGc44B.1.1.3160.0037
ORF1ab/nsp31058T1058IaCcaTc44B.1.1600.000125
ORF1ab/nsp31058T1058IaCcaTc44B.1.20.000035
ORF1ab/nsp31058T1058IaCcaTc44B.1.4270.000202
ORF1ab/nsp31058T1058IaCcaTc44B.1.5680.004444
ORF1ab/nsp31058T1058TacCacT44B.1.6300.020942
ORF1ab/nsp31058T1058TacCacT44P.10.000063
ORF1ab/nsp31058T1058TacCacT44P.1.20.004624
ORF1ab/nsp31058T1058PAccCcc33All0.000001
ORF1ab/nsp31058T1058TacCacT33AY.1100.000338
ORF1ab/nsp31058T1058IaCcaTc33AY.1190.000106
ORF1ab/nsp31058T1058IaCcaTc33AY.140.000264
ORF1ab/nsp31058T1058TacCacT33AY.29.10.000662
ORF1ab/nsp31058T1058IaCcaTc33AY.390.000074
ORF1ab/nsp31058T1058IaCcaTc33AY.470.000093
ORF1ab/nsp31058T1058TacCacT33AY.750.000168
ORF1ab/nsp31058T1058TacCacT33AY.920.000862
ORF1ab/nsp31058T1058TacCacT33AY.99.20.000276
ORF1ab/nsp31058T1058NaCcaAc33B.10.000027
ORF1ab/nsp31058T1058TacCacT33B.1.1.250.001706
ORF1ab/nsp31058T1058IaCcaTc33B.1.1.280.000934
ORF1ab/nsp31058T1058TacCacT33B.1.1.630.001157
ORF1ab/nsp31058T1058TacCacT33B.1.3510.000089
ORF1ab/nsp31058T1058TacCacT33B.1.360.000438
ORF1ab/nsp31058T1058NaCcaAc33B.1.4270.000151
ORF1ab/nsp31058T1058TacCacA23B.1.5250.000226
ORF1ab/nsp31058T1058TacCacT13B.1.5250.000113
ORF1ab/nsp31058T1058TacCacT33B.1.5260.000071
ORF1ab/nsp31058T1058IaCcaTc33B.1.595.30.078947
ORF1ab/nsp31058T1058NaCcaAc33B.230.008772
ORF1ab/nsp31058T1058TacCacT33Q.10.000379
ORF1ab/nsp31058T1058AAccGcc33R.10.00027
ORF1ab/nsp31058T1058AAcCGcT120.055556
ORF1ab/nsp31058T1058DACCGAT120.055556
ORF1ab/nsp31058T1058DACcGAc120.055556
ORF1ab/nsp31058T1058TacCacA120.055556
ORF1ab/nsp31058T1058AAccGcc120.055556
ORF1ab/nsp31058T1058TacCacT120.055556
ORF1ab/nsp31058T1058HACcCAc22All0
ORF1ab/nsp31058T1058KaCCaAA22All0
ORF1ab/nsp31058T1058DACCGAT12All0
ORF1ab/nsp31058T1058DACcGAc12All0
ORF1ab/nsp31058T1058NaCcaAc22AY.1020.000053
ORF1ab/nsp31058T1058IaCcaTc22AY.1020.000053
ORF1ab/nsp31058T1058TacCacT22AY.200.000078
ORF1ab/nsp31058T1058IaCcaTc22AY.3.10.000171
ORF1ab/nsp31058T1058NaCcaAc22AY.360.000296
ORF1ab/nsp31058T1058TacCacT22AY.39.20.003082
ORF1ab/nsp31058T1058IaCcaTc22AY.4.20.000043
ORF1ab/nsp31058T1058AAccGcc22AY.430.000009
ORF1ab/nsp31058T1058AAccGcc22AY.440.000012
ORF1ab/nsp31058T1058AAccGcc22AY.610.00021
ORF1ab/nsp31058T1058TacCacT22AY.850.000854
ORF1ab/nsp31058T1058SaCcaGc22AY.9.10.000167
ORF1ab/nsp31058T1058IaCcaTc22AY.9.20.000073
ORF1ab/nsp31058T1058IaCcaTc22AY.98.10.000097
ORF1ab/nsp31058T1058TacCacT22AZ.60.016807
ORF1ab/nsp31058T1058TacCacA12B0.000128
ORF1ab/nsp31058T1058TacCacT12B0.000128
ORF1ab/nsp31058T1058AAccGcc22B.1.10.000036
ORF1ab/nsp31058T1058PAccCcc22B.1.10.000036
ORF1ab/nsp31058T1058NaCcaAc22B.1.1600.000062
ORF1ab/nsp31058T1058IaCcaTc22B.1.177.600.000437
ORF1ab/nsp31058T1058NaCcaAc22B.1.2210.000142
ORF1ab/nsp31058T1058IaCcaTc22B.1.2210.000142
ORF1ab/nsp31058T1058IaCcaTc22B.1.2430.000139
ORF1ab/nsp31058T1058delACC---22B.1.360.000292
ORF1ab/nsp31058T1058IaCcaTc22B.1.4290.000047
ORF1ab/nsp31058T1058AAccGcc22C.370.000232
ORF1ab/nsp31058T1058AAccGcc22N.50.003534
ORF1ab/nsp31058T1058TacCacT22P.1.150.000465
ORF1ab/nsp31058T1058YACcTAc110.055556
ORF1ab/nsp31058T1058HACcCAc110.055556
ORF1ab/nsp31058T1058PAccCcc110.055556
ORF1ab/nsp31058T1058SAccTcc110.055556
ORF1ab/nsp31058T1058KaCCaAA110.055556
ORF1ab/nsp31058T1058TacCacA11A0.000387
ORF1ab/nsp31058T1058TacCacT11A.2.50.000499
ORF1ab/nsp31058T1058YACcTAc11All0
ORF1ab/nsp31058T1058del1aCCaT-11All0
ORF1ab/nsp31058T1058TacCacT11AY.100.00053
ORF1ab/nsp31058T1058TacCacT11AY.1020.000027
ORF1ab/nsp31058T1058AAccGcc11AY.1020.000027
ORF1ab/nsp31058T1058NaCcaAc11AY.1030.000006
ORF1ab/nsp31058T1058TacCacT11AY.1130.000142
ORF1ab/nsp31058T1058TacCacT11AY.120.000316
ORF1ab/nsp31058T1058TacCacT11AY.1210.000135
ORF1ab/nsp31058T1058TacCacT11AY.130.000161
ORF1ab/nsp31058T1058TacCacT11AY.16.10.00047
ORF1ab/nsp31058T1058AAccGcc11AY.200.000039
ORF1ab/nsp31058T1058NaCcaAc11AY.200.000039
ORF1ab/nsp31058T1058IaCcaTc11AY.200.000039
ORF1ab/nsp31058T1058NaCcaAc11AY.230.00007
ORF1ab/nsp31058T1058IaCcaTc11AY.29.10.000221
ORF1ab/nsp31058T1058NaCcaAc11AY.300.000396
ORF1ab/nsp31058T1058NaCcaAc11AY.330.000067
ORF1ab/nsp31058T1058delACC---11AY.360.000148
ORF1ab/nsp31058T1058TacCacT11AY.390.000025
ORF1ab/nsp31058T1058IaCcaTc11AY.39.10.00004
ORF1ab/nsp31058T1058TacCacT11AY.39.10.00004
ORF1ab/nsp31058T1058TacCacT11AY.39.1.10.000725
ORF1ab/nsp31058T1058SAccTcc11AY.40.000002
ORF1ab/nsp31058T1058delACC---11AY.4.30.000842
ORF1ab/nsp31058T1058IaCcaTc11AY.4.30.000842
ORF1ab/nsp31058T1058TacCacT11AY.410.000294
ORF1ab/nsp31058T1058SAccTcc11AY.430.000004
ORF1ab/nsp31058T1058NaCcaAc11AY.430.000004
ORF1ab/nsp31058T1058NaCcaAc11AY.46.60.000072
ORF1ab/nsp31058T1058TacCacT11AY.46.60.000072
ORF1ab/nsp31058T1058IaCcaTc11AY.46.60.000072
ORF1ab/nsp31058T1058AAccGcc11AY.480.000465
ORF1ab/nsp31058T1058TacCacT11AY.490.003195
ORF1ab/nsp31058T1058IaCcaTc11AY.5.40.000277
ORF1ab/nsp31058T1058AAccGcc11AY.60.000041
ORF1ab/nsp31058T1058IaCcaTc11AY.620.000436
ORF1ab/nsp31058T1058TacCacT11AY.700.000209
ORF1ab/nsp31058T1058delACC---11AY.750.000056
ORF1ab/nsp31058T1058TacCacT11AY.80.000606
ORF1ab/nsp31058T1058NaCcaAc11AY.850.000427
ORF1ab/nsp31058T1058delACC---11AY.850.000427
ORF1ab/nsp31058T1058SAccTcc11AY.90.000068
ORF1ab/nsp31058T1058IaCcaTc11AY.920.000287
ORF1ab/nsp31058T1058TacCacA11AY.930.000273
ORF1ab/nsp31058T1058TacCacT11AY.980.000079
ORF1ab/nsp31058T1058TacCacT11AY.98.10.000048
ORF1ab/nsp31058T1058del1aCCaT-11B.10.000009
ORF1ab/nsp31058T1058AAccGcc11B.10.000009
ORF1ab/nsp31058T1058NaCcaAc11B.1.10.000018
ORF1ab/nsp31058T1058TacCacT11B.1.1.1380.006061
ORF1ab/nsp31058T1058TacCacT11B.1.1.1700.001247
ORF1ab/nsp31058T1058SaCcaGc11B.1.1.1920.002309
ORF1ab/nsp31058T1058TacCacT11B.1.1.1920.002309
ORF1ab/nsp31058T1058TacCacT11B.1.1.2140.000055
ORF1ab/nsp31058T1058TacCacT11B.1.1.3110.000358
ORF1ab/nsp31058T1058IaCcaTc11B.1.1.3170.000412
ORF1ab/nsp31058T1058TacCacT11B.1.1.330.000421
ORF1ab/nsp31058T1058TacCacT11B.1.1.3740.002375
ORF1ab/nsp31058T1058TacCacT11B.1.1.510.001718
ORF1ab/nsp31058T1058delACC---11B.1.1.630.000386
ORF1ab/nsp31058T1058delACC---11B.1.1.70.000001
ORF1ab/nsp31058T1058IaCcaTc11B.1.1.700.000341
ORF1ab/nsp31058T1058TacCacT11B.1.1.700.000341
ORF1ab/nsp31058T1058TacCacT11B.1.1280.000635
ORF1ab/nsp31058T1058IaCcaTc11B.1.1280.000635
ORF1ab/nsp31058T1058TacCacT11B.1.177.120.000152
ORF1ab/nsp31058T1058TacCacT11B.1.177.170.000821
ORF1ab/nsp31058T1058TacCacT11B.1.177.40.000211
ORF1ab/nsp31058T1058TacCacT11B.1.177.520.001757
ORF1ab/nsp31058T1058TacCacT11B.1.177.720.00339
ORF1ab/nsp31058T1058TacCacT11B.1.177.770.000726
ORF1ab/nsp31058T1058TacCacT11B.1.177.820.000477
ORF1ab/nsp31058T1058NaCcaAc11B.1.20.000009
ORF1ab/nsp31058T1058SAccTcc11B.1.20.000009
ORF1ab/nsp31058T1058TacCacT11B.1.2180.005155
ORF1ab/nsp31058T1058IaCcaTc11B.1.2340.000132
ORF1ab/nsp31058T1058AAccGcc11B.1.2400.000216
ORF1ab/nsp31058T1058TacCacT11B.1.2580.000067
ORF1ab/nsp31058T1058HACcCAc11B.1.2580.000067
ORF1ab/nsp31058T1058IaCcaTc11B.1.258.140.00098
ORF1ab/nsp31058T1058TacCacT11B.1.258.170.000104
ORF1ab/nsp31058T1058TacCacA11B.1.3010.005917
ORF1ab/nsp31058T1058NaCcaAc11B.1.3320.003497
ORF1ab/nsp31058T1058IaCcaTc11B.1.3510.00003
ORF1ab/nsp31058T1058NaCcaAc11B.1.3510.00003
ORF1ab/nsp31058T1058TacCacT11B.1.36.220.001208
ORF1ab/nsp31058T1058TacCacT11B.1.36.290.000517
ORF1ab/nsp31058T1058AAccGcc11B.1.3690.000285
ORF1ab/nsp31058T1058IaCcaTc11B.1.3950.007042
ORF1ab/nsp31058T1058IaCcaTc11B.1.3970.004854
ORF1ab/nsp31058T1058TacCacA11B.1.4290.000024
ORF1ab/nsp31058T1058IaCcaTc11B.1.438.10.000107
ORF1ab/nsp31058T1058TacCacT11B.1.4410.009615
ORF1ab/nsp31058T1058TacCacT11B.1.466.20.000391
ORF1ab/nsp31058T1058TacCacT11B.1.5030.002488
ORF1ab/nsp31058T1058TacCacT11B.1.5600.00463
ORF1ab/nsp31058T1058AAccGcc11B.1.5610.000397
ORF1ab/nsp31058T1058TacCacT11B.1.5640.000426
ORF1ab/nsp31058T1058TacCacT11B.1.5870.001898
ORF1ab/nsp31058T1058IaCcaTc11B.1.5950.000261
ORF1ab/nsp31058T1058TacCacT11B.1.595.10.005848
ORF1ab/nsp31058T1058IaCcaTc11B.1.617.10.000129
ORF1ab/nsp31058T1058KaCCaAA11B.1.617.20.000004
ORF1ab/nsp31058T1058delACC---11B.1.617.20.000004
ORF1ab/nsp31058T1058TacCacA11B.1.6230.000536
ORF1ab/nsp31058T1058delACC---11B.150.017544
ORF1ab/nsp31058T1058TacCacT11B.3.10.001658
ORF1ab/nsp31058T1058TacCacT11C.350.000774
ORF1ab/nsp31058T1058TacCacT11C.390.018868
ORF1ab/nsp31058T1058AAccGcc11P.10.000016
ORF1ab/nsp31058T1058delACC---11P.10.000016
ORF1ab/nsp31058T1058TacCacT11P.1.160.000374
ORF1ab/nsp31058T1058TacCacT11P.20.000187