CoV-GLUE | Mutations | Mutation
Details of the codons used for the mutation across all lineages (CodonProp is the proportion each codon is used for this AA mutation):
ORF | CodonNum | Mut | ORF1abMut | MutType | RefCodon | MutCodon | AACount | CodonCount | CodonProp | Genome Position |
ORF1ab/nsp3 | 1058 | T1058T | T1876T | syn | acC | acT | 1040 | 1004 | 0.965385 | 5891-5893 |
ORF1ab/nsp3 | 1058 | T1058T | T1876T | syn | acC | acA | 1040 | 35 | 0.0336538 | 5891-5893 |
ORF1ab/nsp3 | 1058 | T1058T | T1876T | syn | acC | acG | 1040 | 1 | 0.000961538 | 5891-5893 |
ORF1ab/nsp3 | 1058 | T1058N | T1876N | nonsyn | aCc | aAc | 579 | 578 | 0.998273 | 5891-5893 |
ORF1ab/nsp3 | 1058 | T1058N | T1876N | nonsyn | aCC | aAT | 579 | 1 | 0.00172712 | 5891-5893 |
ORF1ab/nsp3 | 1058 | T1058A | T1876A | nonsyn | Acc | Gcc | 526 | 525 | 0.998099 | 5891-5893 |
ORF1ab/nsp3 | 1058 | T1058A | T1876A | nonsyn | AcC | GcT | 526 | 1 | 0.00190114 | 5891-5893 |
ORF1ab/nsp3 | 1058 | T1058I | T1876I | nonsyn | aCc | aTc | 494 | 489 | 0.989879 | 5891-5893 |
ORF1ab/nsp3 | 1058 | T1058I | T1876I | nonsyn | aCC | aTT | 494 | 5 | 0.0101215 | 5891-5893 |
ORF1ab/nsp3 | 1058 | T1058S | T1876S | nonsyn | aCc | aGc | 12 | 7 | 0.583333 | 5891-5893 |
ORF1ab/nsp3 | 1058 | T1058S | T1876S | nonsyn | Acc | Tcc | 12 | 5 | 0.416667 | 5891-5893 |
ORF1ab/nsp3 | 1058 | T1058del | T1876del | del | ACC | --- | 11 | 11 | 1 | 5891-5893 |
ORF1ab/nsp3 | 1058 | T1058P | T1876P | nonsyn | Acc | Ccc | 3 | 3 | 1 | 5891-5893 |
ORF1ab/nsp3 | 1058 | T1058K | T1876K | nonsyn | aCC | aAA | 2 | 2 | 1 | 5891-5893 |
ORF1ab/nsp3 | 1058 | T1058H | T1876H | nonsyn | ACc | CAc | 2 | 2 | 1 | 5891-5893 |
ORF1ab/nsp3 | 1058 | T1058D | T1876D | nonsyn | ACC | GAT | 2 | 1 | 0.5 | 5891-5893 |
ORF1ab/nsp3 | 1058 | T1058D | T1876D | nonsyn | ACc | GAc | 2 | 1 | 0.5 | 5891-5893 |
ORF1ab/nsp3 | 1058 | T1058Y | T1876Y | nonsyn | ACc | TAc | 1 | 1 | 1 | 5891-5893 |
ORF1ab/nsp3 | 1058 | T1058del1 | T1876del1 | del | aCC | aT- | 1 | 1 | 1 | 5891-5893 |
Details of the mutation no within lineages (LineageCodonProp is the proportion the codon is observed at, at this particular site, on each lineage):
ORF | CodonNum | Mut | RefCodon | MutCodon | CodonCount | AACount | Lineage | LineageCodonProp |
ORF1ab/nsp3 | 1058 | T1058T | acC | acT | 1004 | 1040 | All | 0.000192 |
ORF1ab/nsp3 | 1058 | T1058T | acC | acA | 35 | 1040 | All | 0.000007 |
ORF1ab/nsp3 | 1058 | T1058T | acC | acG | 1 | 1040 | All | 0 |
ORF1ab/nsp3 | 1058 | T1058N | aCc | aAc | 578 | 579 | All | 0.000111 |
ORF1ab/nsp3 | 1058 | T1058N | aCC | aAT | 1 | 579 | All | 0 |
ORF1ab/nsp3 | 1058 | T1058A | Acc | Gcc | 525 | 526 | All | 0.0001 |
ORF1ab/nsp3 | 1058 | T1058A | AcC | GcT | 1 | 526 | All | 0 |
ORF1ab/nsp3 | 1058 | T1058I | aCc | aTc | 489 | 494 | All | 0.000094 |
ORF1ab/nsp3 | 1058 | T1058I | aCC | aTT | 5 | 494 | All | 0.000001 |
ORF1ab/nsp3 | 1058 | T1058N | aCc | aAc | 453 | 453 | AY.39 | 0.011194 |
ORF1ab/nsp3 | 1058 | T1058A | Acc | Gcc | 405 | 405 | B.1.1.7 | 0.000363 |
ORF1ab/nsp3 | 1058 | T1058T | acC | acT | 260 | 261 | B.1.1.7 | 0.000233 |
ORF1ab/nsp3 | 1058 | T1058T | acC | acA | 1 | 261 | B.1.1.7 | 0.000001 |
ORF1ab/nsp3 | 1058 | T1058I | aCc | aTc | 190 | 190 | B.1.1.7 | 0.00017 |
ORF1ab/nsp3 | 1058 | T1058T | acC | acT | 93 | 93 | AY.29 | 0.001467 |
ORF1ab/nsp3 | 1058 | T1058T | acC | acT | 83 | 83 | AY.103 | 0.000515 |
ORF1ab/nsp3 | 1058 | T1058T | acC | acT | 68 | 70 | AY.25 | 0.000409 |
ORF1ab/nsp3 | 1058 | T1058T | acC | acA | 2 | 70 | AY.25 | 0.000012 |
ORF1ab/nsp3 | 1058 | T1058T | acC | acT | 64 | 67 | AY.44 | 0.00039 |
ORF1ab/nsp3 | 1058 | T1058T | acC | acA | 3 | 67 | AY.44 | 0.000018 |
ORF1ab/nsp3 | 1058 | T1058T | acC | acT | 50 | 55 | B.1.617.2 | 0.000188 |
ORF1ab/nsp3 | 1058 | T1058T | acC | acA | 4 | 55 | B.1.617.2 | 0.000015 |
ORF1ab/nsp3 | 1058 | T1058T | acC | acG | 1 | 55 | B.1.617.2 | 0.000004 |
ORF1ab/nsp3 | 1058 | T1058T | acC | acT | 43 | 43 | B.1.369 | 0.012265 |
ORF1ab/nsp3 | 1058 | T1058A | Acc | Gcc | 41 | 41 | AY.4 | 0.000064 |
ORF1ab/nsp3 | 1058 | T1058I | aCc | aTc | 35 | 40 | C.37 | 0.004062 |
ORF1ab/nsp3 | 1058 | T1058I | aCC | aTT | 5 | 40 | C.37 | 0.00058 |
ORF1ab/nsp3 | 1058 | T1058A | Acc | Gcc | 35 | 35 | AY.42 | 0.001408 |
ORF1ab/nsp3 | 1058 | T1058N | aCc | aAc | 32 | 32 | B.1.617.2 | 0.00012 |
ORF1ab/nsp3 | 1058 | T1058I | aCc | aTc | 29 | 29 | AY.4 | 0.000045 |
ORF1ab/nsp3 | 1058 | T1058T | acC | acT | 27 | 28 | AY.4 | 0.000042 |
ORF1ab/nsp3 | 1058 | T1058T | acC | acA | 1 | 28 | AY.4 | 0.000002 |
ORF1ab/nsp3 | 1058 | T1058I | aCc | aTc | 23 | 23 | AY.13 | 0.003703 |
ORF1ab/nsp3 | 1058 | T1058T | acC | acT | 22 | 23 | B.1.177 | 0.00029 |
ORF1ab/nsp3 | 1058 | T1058T | acC | acA | 1 | 23 | B.1.177 | 0.000013 |
ORF1ab/nsp3 | 1058 | T1058T | acC | acT | 20 | 20 | B.1.2 | 0.000176 |
ORF1ab/nsp3 | 1058 | T1058I | aCc | aTc | 20 | 20 | B.1.617.2 | 0.000075 |
ORF1ab/nsp3 | 1058 | T1058N | aCc | aAc | 17 | 17 | AY.4 | 0.000026 |
ORF1ab/nsp3 | 1058 | T1058T | acC | acT | 17 | 17 | B.1.491 | 0.894737 |
ORF1ab/nsp3 | 1058 | T1058T | acC | acT | 17 | 17 | B.1.595 | 0.004436 |
ORF1ab/nsp3 | 1058 | T1058T | acC | acT | 13 | 16 | B.1 | 0.000119 |
ORF1ab/nsp3 | 1058 | T1058T | acC | acA | 3 | 16 | B.1 | 0.000027 |
ORF1ab/nsp3 | 1058 | T1058I | aCc | aTc | 16 | 16 | B.1.177 | 0.000211 |
ORF1ab/nsp3 | 1058 | T1058I | aCc | aTc | 13 | 13 | AY.3 | 0.000129 |
ORF1ab/nsp3 | 1058 | T1058S | aCc | aGc | 7 | 12 | All | 0.000001 |
ORF1ab/nsp3 | 1058 | T1058S | Acc | Tcc | 5 | 12 | All | 0.000001 |
ORF1ab/nsp3 | 1058 | T1058I | aCc | aTc | 12 | 12 | B.1.177.4 | 0.002533 |
ORF1ab/nsp3 | 1058 | T1058T | acC | acT | 12 | 12 | C.37 | 0.001393 |
ORF1ab/nsp3 | 1058 | T1058del | ACC | --- | 11 | 11 | All | 0.000002 |
ORF1ab/nsp3 | 1058 | T1058I | aCc | aTc | 11 | 11 | AY.44 | 0.000067 |
ORF1ab/nsp3 | 1058 | T1058I | aCc | aTc | 11 | 11 | B.1.582 | 0.005397 |
ORF1ab/nsp3 | 1058 | T1058T | acC | acT | 6 | 10 | AY.43 | 0.000027 |
ORF1ab/nsp3 | 1058 | T1058T | acC | acA | 4 | 10 | AY.43 | 0.000018 |
ORF1ab/nsp3 | 1058 | T1058N | aCc | aAc | 9 | 9 | AY.44 | 0.000055 |
ORF1ab/nsp3 | 1058 | T1058T | acC | acT | 9 | 9 | B.1.1 | 0.000163 |
ORF1ab/nsp3 | 1058 | T1058T | acC | acT | 9 | 9 | B.1.221 | 0.000639 |
ORF1ab/nsp3 | 1058 | T1058I | aCc | aTc | 8 | 8 | AY.103 | 0.00005 |
ORF1ab/nsp3 | 1058 | T1058T | acC | acT | 8 | 8 | AY.120 | 0.000297 |
ORF1ab/nsp3 | 1058 | T1058N | aCc | aAc | 8 | 8 | AY.3 | 0.00008 |
ORF1ab/nsp3 | 1058 | T1058T | acC | acA | 7 | 8 | AY.4.2 | 0.000152 |
ORF1ab/nsp3 | 1058 | T1058T | acC | acT | 1 | 8 | AY.4.2 | 0.000022 |
ORF1ab/nsp3 | 1058 | T1058I | aCc | aTc | 8 | 8 | B.1.1 | 0.000145 |
ORF1ab/nsp3 | 1058 | T1058T | acC | acT | 8 | 8 | N.4 | 0.034043 |
ORF1ab/nsp3 | 1058 | T1058A | Acc | Gcc | 7 | 7 | AY.25 | 0.000042 |
ORF1ab/nsp3 | 1058 | T1058T | acC | acT | 7 | 7 | AY.34 | 0.000679 |
ORF1ab/nsp3 | 1058 | T1058I | aCc | aTc | 7 | 7 | AY.6 | 0.000288 |
ORF1ab/nsp3 | 1058 | T1058T | acC | acT | 6 | 6 | AY.100 | 0.000276 |
ORF1ab/nsp3 | 1058 | T1058I | aCc | aTc | 6 | 6 | AY.29 | 0.000095 |
ORF1ab/nsp3 | 1058 | T1058T | acC | acT | 6 | 6 | AY.3 | 0.00006 |
ORF1ab/nsp3 | 1058 | T1058T | acC | acT | 6 | 6 | AY.47 | 0.000187 |
ORF1ab/nsp3 | 1058 | T1058T | acC | acT | 6 | 6 | AY.67 | 0.002786 |
ORF1ab/nsp3 | 1058 | T1058I | aCc | aTc | 6 | 6 | B.1 | 0.000055 |
ORF1ab/nsp3 | 1058 | T1058N | aCc | aAc | 6 | 6 | B.1.1.7 | 0.000005 |
ORF1ab/nsp3 | 1058 | T1058A | Acc | Gcc | 6 | 6 | B.1.2 | 0.000053 |
ORF1ab/nsp3 | 1058 | T1058A | Acc | Gcc | 6 | 6 | B.1.526 | 0.000141 |
ORF1ab/nsp3 | 1058 | T1058T | acC | acT | 6 | 6 | B.1.561 | 0.002382 |
ORF1ab/nsp3 | 1058 | T1058I | aCc | aTc | 6 | 6 | P.1 | 0.000095 |
ORF1ab/nsp3 | 1058 | T1058N | aCc | aAc | 6 | 6 | P.1 | 0.000095 |
ORF1ab/nsp3 | 1058 | T1058I | aCc | aTc | 5 | 5 | AY.25 | 0.00003 |
ORF1ab/nsp3 | 1058 | T1058N | aCc | aAc | 5 | 5 | AY.34 | 0.000485 |
ORF1ab/nsp3 | 1058 | T1058N | aCc | aAc | 5 | 5 | AY.4.2 | 0.000108 |
ORF1ab/nsp3 | 1058 | T1058T | acC | acT | 5 | 5 | AY.5 | 0.000103 |
ORF1ab/nsp3 | 1058 | T1058T | acC | acT | 5 | 5 | B.1.1.519 | 0.000199 |
ORF1ab/nsp3 | 1058 | T1058N | aCc | aAc | 5 | 5 | B.1.1.519 | 0.000199 |
ORF1ab/nsp3 | 1058 | T1058T | acC | acT | 5 | 5 | B.1.160 | 0.000156 |
ORF1ab/nsp3 | 1058 | T1058N | aCc | aAc | 3 | 4 | 0.166667 | |
ORF1ab/nsp3 | 1058 | T1058N | aCC | aAT | 1 | 4 | 0.055556 | |
ORF1ab/nsp3 | 1058 | T1058T | acC | acT | 4 | 4 | AE.8 | 0.001956 |
ORF1ab/nsp3 | 1058 | T1058I | aCc | aTc | 4 | 4 | AY.101 | 0.001962 |
ORF1ab/nsp3 | 1058 | T1058I | aCc | aTc | 4 | 4 | AY.104 | 0.007937 |
ORF1ab/nsp3 | 1058 | T1058T | acC | acT | 4 | 4 | AY.42 | 0.000161 |
ORF1ab/nsp3 | 1058 | T1058I | aCc | aTc | 4 | 4 | AY.75 | 0.000224 |
ORF1ab/nsp3 | 1058 | T1058T | acC | acT | 4 | 4 | B.1.1.222 | 0.000816 |
ORF1ab/nsp3 | 1058 | T1058S | aCc | aGc | 4 | 4 | B.1.1.316 | 0.0037 |
ORF1ab/nsp3 | 1058 | T1058I | aCc | aTc | 4 | 4 | B.1.160 | 0.000125 |
ORF1ab/nsp3 | 1058 | T1058I | aCc | aTc | 4 | 4 | B.1.2 | 0.000035 |
ORF1ab/nsp3 | 1058 | T1058I | aCc | aTc | 4 | 4 | B.1.427 | 0.000202 |
ORF1ab/nsp3 | 1058 | T1058I | aCc | aTc | 4 | 4 | B.1.568 | 0.004444 |
ORF1ab/nsp3 | 1058 | T1058T | acC | acT | 4 | 4 | B.1.630 | 0.020942 |
ORF1ab/nsp3 | 1058 | T1058T | acC | acT | 4 | 4 | P.1 | 0.000063 |
ORF1ab/nsp3 | 1058 | T1058T | acC | acT | 4 | 4 | P.1.2 | 0.004624 |
ORF1ab/nsp3 | 1058 | T1058P | Acc | Ccc | 3 | 3 | All | 0.000001 |
ORF1ab/nsp3 | 1058 | T1058T | acC | acT | 3 | 3 | AY.110 | 0.000338 |
ORF1ab/nsp3 | 1058 | T1058I | aCc | aTc | 3 | 3 | AY.119 | 0.000106 |
ORF1ab/nsp3 | 1058 | T1058I | aCc | aTc | 3 | 3 | AY.14 | 0.000264 |
ORF1ab/nsp3 | 1058 | T1058T | acC | acT | 3 | 3 | AY.29.1 | 0.000662 |
ORF1ab/nsp3 | 1058 | T1058I | aCc | aTc | 3 | 3 | AY.39 | 0.000074 |
ORF1ab/nsp3 | 1058 | T1058I | aCc | aTc | 3 | 3 | AY.47 | 0.000093 |
ORF1ab/nsp3 | 1058 | T1058T | acC | acT | 3 | 3 | AY.75 | 0.000168 |
ORF1ab/nsp3 | 1058 | T1058T | acC | acT | 3 | 3 | AY.92 | 0.000862 |
ORF1ab/nsp3 | 1058 | T1058T | acC | acT | 3 | 3 | AY.99.2 | 0.000276 |
ORF1ab/nsp3 | 1058 | T1058N | aCc | aAc | 3 | 3 | B.1 | 0.000027 |
ORF1ab/nsp3 | 1058 | T1058T | acC | acT | 3 | 3 | B.1.1.25 | 0.001706 |
ORF1ab/nsp3 | 1058 | T1058I | aCc | aTc | 3 | 3 | B.1.1.28 | 0.000934 |
ORF1ab/nsp3 | 1058 | T1058T | acC | acT | 3 | 3 | B.1.1.63 | 0.001157 |
ORF1ab/nsp3 | 1058 | T1058T | acC | acT | 3 | 3 | B.1.351 | 0.000089 |
ORF1ab/nsp3 | 1058 | T1058T | acC | acT | 3 | 3 | B.1.36 | 0.000438 |
ORF1ab/nsp3 | 1058 | T1058N | aCc | aAc | 3 | 3 | B.1.427 | 0.000151 |
ORF1ab/nsp3 | 1058 | T1058T | acC | acA | 2 | 3 | B.1.525 | 0.000226 |
ORF1ab/nsp3 | 1058 | T1058T | acC | acT | 1 | 3 | B.1.525 | 0.000113 |
ORF1ab/nsp3 | 1058 | T1058T | acC | acT | 3 | 3 | B.1.526 | 0.000071 |
ORF1ab/nsp3 | 1058 | T1058I | aCc | aTc | 3 | 3 | B.1.595.3 | 0.078947 |
ORF1ab/nsp3 | 1058 | T1058N | aCc | aAc | 3 | 3 | B.23 | 0.008772 |
ORF1ab/nsp3 | 1058 | T1058T | acC | acT | 3 | 3 | Q.1 | 0.000379 |
ORF1ab/nsp3 | 1058 | T1058A | Acc | Gcc | 3 | 3 | R.1 | 0.00027 |
ORF1ab/nsp3 | 1058 | T1058A | AcC | GcT | 1 | 2 | 0.055556 | |
ORF1ab/nsp3 | 1058 | T1058D | ACC | GAT | 1 | 2 | 0.055556 | |
ORF1ab/nsp3 | 1058 | T1058D | ACc | GAc | 1 | 2 | 0.055556 | |
ORF1ab/nsp3 | 1058 | T1058T | acC | acA | 1 | 2 | 0.055556 | |
ORF1ab/nsp3 | 1058 | T1058A | Acc | Gcc | 1 | 2 | 0.055556 | |
ORF1ab/nsp3 | 1058 | T1058T | acC | acT | 1 | 2 | 0.055556 | |
ORF1ab/nsp3 | 1058 | T1058H | ACc | CAc | 2 | 2 | All | 0 |
ORF1ab/nsp3 | 1058 | T1058K | aCC | aAA | 2 | 2 | All | 0 |
ORF1ab/nsp3 | 1058 | T1058D | ACC | GAT | 1 | 2 | All | 0 |
ORF1ab/nsp3 | 1058 | T1058D | ACc | GAc | 1 | 2 | All | 0 |
ORF1ab/nsp3 | 1058 | T1058N | aCc | aAc | 2 | 2 | AY.102 | 0.000053 |
ORF1ab/nsp3 | 1058 | T1058I | aCc | aTc | 2 | 2 | AY.102 | 0.000053 |
ORF1ab/nsp3 | 1058 | T1058T | acC | acT | 2 | 2 | AY.20 | 0.000078 |
ORF1ab/nsp3 | 1058 | T1058I | aCc | aTc | 2 | 2 | AY.3.1 | 0.000171 |
ORF1ab/nsp3 | 1058 | T1058N | aCc | aAc | 2 | 2 | AY.36 | 0.000296 |
ORF1ab/nsp3 | 1058 | T1058T | acC | acT | 2 | 2 | AY.39.2 | 0.003082 |
ORF1ab/nsp3 | 1058 | T1058I | aCc | aTc | 2 | 2 | AY.4.2 | 0.000043 |
ORF1ab/nsp3 | 1058 | T1058A | Acc | Gcc | 2 | 2 | AY.43 | 0.000009 |
ORF1ab/nsp3 | 1058 | T1058A | Acc | Gcc | 2 | 2 | AY.44 | 0.000012 |
ORF1ab/nsp3 | 1058 | T1058A | Acc | Gcc | 2 | 2 | AY.61 | 0.00021 |
ORF1ab/nsp3 | 1058 | T1058T | acC | acT | 2 | 2 | AY.85 | 0.000854 |
ORF1ab/nsp3 | 1058 | T1058S | aCc | aGc | 2 | 2 | AY.9.1 | 0.000167 |
ORF1ab/nsp3 | 1058 | T1058I | aCc | aTc | 2 | 2 | AY.9.2 | 0.000073 |
ORF1ab/nsp3 | 1058 | T1058I | aCc | aTc | 2 | 2 | AY.98.1 | 0.000097 |
ORF1ab/nsp3 | 1058 | T1058T | acC | acT | 2 | 2 | AZ.6 | 0.016807 |
ORF1ab/nsp3 | 1058 | T1058T | acC | acA | 1 | 2 | B | 0.000128 |
ORF1ab/nsp3 | 1058 | T1058T | acC | acT | 1 | 2 | B | 0.000128 |
ORF1ab/nsp3 | 1058 | T1058A | Acc | Gcc | 2 | 2 | B.1.1 | 0.000036 |
ORF1ab/nsp3 | 1058 | T1058P | Acc | Ccc | 2 | 2 | B.1.1 | 0.000036 |
ORF1ab/nsp3 | 1058 | T1058N | aCc | aAc | 2 | 2 | B.1.160 | 0.000062 |
ORF1ab/nsp3 | 1058 | T1058I | aCc | aTc | 2 | 2 | B.1.177.60 | 0.000437 |
ORF1ab/nsp3 | 1058 | T1058N | aCc | aAc | 2 | 2 | B.1.221 | 0.000142 |
ORF1ab/nsp3 | 1058 | T1058I | aCc | aTc | 2 | 2 | B.1.221 | 0.000142 |
ORF1ab/nsp3 | 1058 | T1058I | aCc | aTc | 2 | 2 | B.1.243 | 0.000139 |
ORF1ab/nsp3 | 1058 | T1058del | ACC | --- | 2 | 2 | B.1.36 | 0.000292 |
ORF1ab/nsp3 | 1058 | T1058I | aCc | aTc | 2 | 2 | B.1.429 | 0.000047 |
ORF1ab/nsp3 | 1058 | T1058A | Acc | Gcc | 2 | 2 | C.37 | 0.000232 |
ORF1ab/nsp3 | 1058 | T1058A | Acc | Gcc | 2 | 2 | N.5 | 0.003534 |
ORF1ab/nsp3 | 1058 | T1058T | acC | acT | 2 | 2 | P.1.15 | 0.000465 |
ORF1ab/nsp3 | 1058 | T1058Y | ACc | TAc | 1 | 1 | 0.055556 | |
ORF1ab/nsp3 | 1058 | T1058H | ACc | CAc | 1 | 1 | 0.055556 | |
ORF1ab/nsp3 | 1058 | T1058P | Acc | Ccc | 1 | 1 | 0.055556 | |
ORF1ab/nsp3 | 1058 | T1058S | Acc | Tcc | 1 | 1 | 0.055556 | |
ORF1ab/nsp3 | 1058 | T1058K | aCC | aAA | 1 | 1 | 0.055556 | |
ORF1ab/nsp3 | 1058 | T1058T | acC | acA | 1 | 1 | A | 0.000387 |
ORF1ab/nsp3 | 1058 | T1058T | acC | acT | 1 | 1 | A.2.5 | 0.000499 |
ORF1ab/nsp3 | 1058 | T1058Y | ACc | TAc | 1 | 1 | All | 0 |
ORF1ab/nsp3 | 1058 | T1058del1 | aCC | aT- | 1 | 1 | All | 0 |
ORF1ab/nsp3 | 1058 | T1058T | acC | acT | 1 | 1 | AY.10 | 0.00053 |
ORF1ab/nsp3 | 1058 | T1058T | acC | acT | 1 | 1 | AY.102 | 0.000027 |
ORF1ab/nsp3 | 1058 | T1058A | Acc | Gcc | 1 | 1 | AY.102 | 0.000027 |
ORF1ab/nsp3 | 1058 | T1058N | aCc | aAc | 1 | 1 | AY.103 | 0.000006 |
ORF1ab/nsp3 | 1058 | T1058T | acC | acT | 1 | 1 | AY.113 | 0.000142 |
ORF1ab/nsp3 | 1058 | T1058T | acC | acT | 1 | 1 | AY.12 | 0.000316 |
ORF1ab/nsp3 | 1058 | T1058T | acC | acT | 1 | 1 | AY.121 | 0.000135 |
ORF1ab/nsp3 | 1058 | T1058T | acC | acT | 1 | 1 | AY.13 | 0.000161 |
ORF1ab/nsp3 | 1058 | T1058T | acC | acT | 1 | 1 | AY.16.1 | 0.00047 |
ORF1ab/nsp3 | 1058 | T1058A | Acc | Gcc | 1 | 1 | AY.20 | 0.000039 |
ORF1ab/nsp3 | 1058 | T1058N | aCc | aAc | 1 | 1 | AY.20 | 0.000039 |
ORF1ab/nsp3 | 1058 | T1058I | aCc | aTc | 1 | 1 | AY.20 | 0.000039 |
ORF1ab/nsp3 | 1058 | T1058N | aCc | aAc | 1 | 1 | AY.23 | 0.00007 |
ORF1ab/nsp3 | 1058 | T1058I | aCc | aTc | 1 | 1 | AY.29.1 | 0.000221 |
ORF1ab/nsp3 | 1058 | T1058N | aCc | aAc | 1 | 1 | AY.30 | 0.000396 |
ORF1ab/nsp3 | 1058 | T1058N | aCc | aAc | 1 | 1 | AY.33 | 0.000067 |
ORF1ab/nsp3 | 1058 | T1058del | ACC | --- | 1 | 1 | AY.36 | 0.000148 |
ORF1ab/nsp3 | 1058 | T1058T | acC | acT | 1 | 1 | AY.39 | 0.000025 |
ORF1ab/nsp3 | 1058 | T1058I | aCc | aTc | 1 | 1 | AY.39.1 | 0.00004 |
ORF1ab/nsp3 | 1058 | T1058T | acC | acT | 1 | 1 | AY.39.1 | 0.00004 |
ORF1ab/nsp3 | 1058 | T1058T | acC | acT | 1 | 1 | AY.39.1.1 | 0.000725 |
ORF1ab/nsp3 | 1058 | T1058S | Acc | Tcc | 1 | 1 | AY.4 | 0.000002 |
ORF1ab/nsp3 | 1058 | T1058del | ACC | --- | 1 | 1 | AY.4.3 | 0.000842 |
ORF1ab/nsp3 | 1058 | T1058I | aCc | aTc | 1 | 1 | AY.4.3 | 0.000842 |
ORF1ab/nsp3 | 1058 | T1058T | acC | acT | 1 | 1 | AY.41 | 0.000294 |
ORF1ab/nsp3 | 1058 | T1058S | Acc | Tcc | 1 | 1 | AY.43 | 0.000004 |
ORF1ab/nsp3 | 1058 | T1058N | aCc | aAc | 1 | 1 | AY.43 | 0.000004 |
ORF1ab/nsp3 | 1058 | T1058N | aCc | aAc | 1 | 1 | AY.46.6 | 0.000072 |
ORF1ab/nsp3 | 1058 | T1058T | acC | acT | 1 | 1 | AY.46.6 | 0.000072 |
ORF1ab/nsp3 | 1058 | T1058I | aCc | aTc | 1 | 1 | AY.46.6 | 0.000072 |
ORF1ab/nsp3 | 1058 | T1058A | Acc | Gcc | 1 | 1 | AY.48 | 0.000465 |
ORF1ab/nsp3 | 1058 | T1058T | acC | acT | 1 | 1 | AY.49 | 0.003195 |
ORF1ab/nsp3 | 1058 | T1058I | aCc | aTc | 1 | 1 | AY.5.4 | 0.000277 |
ORF1ab/nsp3 | 1058 | T1058A | Acc | Gcc | 1 | 1 | AY.6 | 0.000041 |
ORF1ab/nsp3 | 1058 | T1058I | aCc | aTc | 1 | 1 | AY.62 | 0.000436 |
ORF1ab/nsp3 | 1058 | T1058T | acC | acT | 1 | 1 | AY.70 | 0.000209 |
ORF1ab/nsp3 | 1058 | T1058del | ACC | --- | 1 | 1 | AY.75 | 0.000056 |
ORF1ab/nsp3 | 1058 | T1058T | acC | acT | 1 | 1 | AY.8 | 0.000606 |
ORF1ab/nsp3 | 1058 | T1058N | aCc | aAc | 1 | 1 | AY.85 | 0.000427 |
ORF1ab/nsp3 | 1058 | T1058del | ACC | --- | 1 | 1 | AY.85 | 0.000427 |
ORF1ab/nsp3 | 1058 | T1058S | Acc | Tcc | 1 | 1 | AY.9 | 0.000068 |
ORF1ab/nsp3 | 1058 | T1058I | aCc | aTc | 1 | 1 | AY.92 | 0.000287 |
ORF1ab/nsp3 | 1058 | T1058T | acC | acA | 1 | 1 | AY.93 | 0.000273 |
ORF1ab/nsp3 | 1058 | T1058T | acC | acT | 1 | 1 | AY.98 | 0.000079 |
ORF1ab/nsp3 | 1058 | T1058T | acC | acT | 1 | 1 | AY.98.1 | 0.000048 |
ORF1ab/nsp3 | 1058 | T1058del1 | aCC | aT- | 1 | 1 | B.1 | 0.000009 |
ORF1ab/nsp3 | 1058 | T1058A | Acc | Gcc | 1 | 1 | B.1 | 0.000009 |
ORF1ab/nsp3 | 1058 | T1058N | aCc | aAc | 1 | 1 | B.1.1 | 0.000018 |
ORF1ab/nsp3 | 1058 | T1058T | acC | acT | 1 | 1 | B.1.1.138 | 0.006061 |
ORF1ab/nsp3 | 1058 | T1058T | acC | acT | 1 | 1 | B.1.1.170 | 0.001247 |
ORF1ab/nsp3 | 1058 | T1058S | aCc | aGc | 1 | 1 | B.1.1.192 | 0.002309 |
ORF1ab/nsp3 | 1058 | T1058T | acC | acT | 1 | 1 | B.1.1.192 | 0.002309 |
ORF1ab/nsp3 | 1058 | T1058T | acC | acT | 1 | 1 | B.1.1.214 | 0.000055 |
ORF1ab/nsp3 | 1058 | T1058T | acC | acT | 1 | 1 | B.1.1.311 | 0.000358 |
ORF1ab/nsp3 | 1058 | T1058I | aCc | aTc | 1 | 1 | B.1.1.317 | 0.000412 |
ORF1ab/nsp3 | 1058 | T1058T | acC | acT | 1 | 1 | B.1.1.33 | 0.000421 |
ORF1ab/nsp3 | 1058 | T1058T | acC | acT | 1 | 1 | B.1.1.374 | 0.002375 |
ORF1ab/nsp3 | 1058 | T1058T | acC | acT | 1 | 1 | B.1.1.51 | 0.001718 |
ORF1ab/nsp3 | 1058 | T1058del | ACC | --- | 1 | 1 | B.1.1.63 | 0.000386 |
ORF1ab/nsp3 | 1058 | T1058del | ACC | --- | 1 | 1 | B.1.1.7 | 0.000001 |
ORF1ab/nsp3 | 1058 | T1058I | aCc | aTc | 1 | 1 | B.1.1.70 | 0.000341 |
ORF1ab/nsp3 | 1058 | T1058T | acC | acT | 1 | 1 | B.1.1.70 | 0.000341 |
ORF1ab/nsp3 | 1058 | T1058T | acC | acT | 1 | 1 | B.1.128 | 0.000635 |
ORF1ab/nsp3 | 1058 | T1058I | aCc | aTc | 1 | 1 | B.1.128 | 0.000635 |
ORF1ab/nsp3 | 1058 | T1058T | acC | acT | 1 | 1 | B.1.177.12 | 0.000152 |
ORF1ab/nsp3 | 1058 | T1058T | acC | acT | 1 | 1 | B.1.177.17 | 0.000821 |
ORF1ab/nsp3 | 1058 | T1058T | acC | acT | 1 | 1 | B.1.177.4 | 0.000211 |
ORF1ab/nsp3 | 1058 | T1058T | acC | acT | 1 | 1 | B.1.177.52 | 0.001757 |
ORF1ab/nsp3 | 1058 | T1058T | acC | acT | 1 | 1 | B.1.177.72 | 0.00339 |
ORF1ab/nsp3 | 1058 | T1058T | acC | acT | 1 | 1 | B.1.177.77 | 0.000726 |
ORF1ab/nsp3 | 1058 | T1058T | acC | acT | 1 | 1 | B.1.177.82 | 0.000477 |
ORF1ab/nsp3 | 1058 | T1058N | aCc | aAc | 1 | 1 | B.1.2 | 0.000009 |
ORF1ab/nsp3 | 1058 | T1058S | Acc | Tcc | 1 | 1 | B.1.2 | 0.000009 |
ORF1ab/nsp3 | 1058 | T1058T | acC | acT | 1 | 1 | B.1.218 | 0.005155 |
ORF1ab/nsp3 | 1058 | T1058I | aCc | aTc | 1 | 1 | B.1.234 | 0.000132 |
ORF1ab/nsp3 | 1058 | T1058A | Acc | Gcc | 1 | 1 | B.1.240 | 0.000216 |
ORF1ab/nsp3 | 1058 | T1058T | acC | acT | 1 | 1 | B.1.258 | 0.000067 |
ORF1ab/nsp3 | 1058 | T1058H | ACc | CAc | 1 | 1 | B.1.258 | 0.000067 |
ORF1ab/nsp3 | 1058 | T1058I | aCc | aTc | 1 | 1 | B.1.258.14 | 0.00098 |
ORF1ab/nsp3 | 1058 | T1058T | acC | acT | 1 | 1 | B.1.258.17 | 0.000104 |
ORF1ab/nsp3 | 1058 | T1058T | acC | acA | 1 | 1 | B.1.301 | 0.005917 |
ORF1ab/nsp3 | 1058 | T1058N | aCc | aAc | 1 | 1 | B.1.332 | 0.003497 |
ORF1ab/nsp3 | 1058 | T1058I | aCc | aTc | 1 | 1 | B.1.351 | 0.00003 |
ORF1ab/nsp3 | 1058 | T1058N | aCc | aAc | 1 | 1 | B.1.351 | 0.00003 |
ORF1ab/nsp3 | 1058 | T1058T | acC | acT | 1 | 1 | B.1.36.22 | 0.001208 |
ORF1ab/nsp3 | 1058 | T1058T | acC | acT | 1 | 1 | B.1.36.29 | 0.000517 |
ORF1ab/nsp3 | 1058 | T1058A | Acc | Gcc | 1 | 1 | B.1.369 | 0.000285 |
ORF1ab/nsp3 | 1058 | T1058I | aCc | aTc | 1 | 1 | B.1.395 | 0.007042 |
ORF1ab/nsp3 | 1058 | T1058I | aCc | aTc | 1 | 1 | B.1.397 | 0.004854 |
ORF1ab/nsp3 | 1058 | T1058T | acC | acA | 1 | 1 | B.1.429 | 0.000024 |
ORF1ab/nsp3 | 1058 | T1058I | aCc | aTc | 1 | 1 | B.1.438.1 | 0.000107 |
ORF1ab/nsp3 | 1058 | T1058T | acC | acT | 1 | 1 | B.1.441 | 0.009615 |
ORF1ab/nsp3 | 1058 | T1058T | acC | acT | 1 | 1 | B.1.466.2 | 0.000391 |
ORF1ab/nsp3 | 1058 | T1058T | acC | acT | 1 | 1 | B.1.503 | 0.002488 |
ORF1ab/nsp3 | 1058 | T1058T | acC | acT | 1 | 1 | B.1.560 | 0.00463 |
ORF1ab/nsp3 | 1058 | T1058A | Acc | Gcc | 1 | 1 | B.1.561 | 0.000397 |
ORF1ab/nsp3 | 1058 | T1058T | acC | acT | 1 | 1 | B.1.564 | 0.000426 |
ORF1ab/nsp3 | 1058 | T1058T | acC | acT | 1 | 1 | B.1.587 | 0.001898 |
ORF1ab/nsp3 | 1058 | T1058I | aCc | aTc | 1 | 1 | B.1.595 | 0.000261 |
ORF1ab/nsp3 | 1058 | T1058T | acC | acT | 1 | 1 | B.1.595.1 | 0.005848 |
ORF1ab/nsp3 | 1058 | T1058I | aCc | aTc | 1 | 1 | B.1.617.1 | 0.000129 |
ORF1ab/nsp3 | 1058 | T1058K | aCC | aAA | 1 | 1 | B.1.617.2 | 0.000004 |
ORF1ab/nsp3 | 1058 | T1058del | ACC | --- | 1 | 1 | B.1.617.2 | 0.000004 |
ORF1ab/nsp3 | 1058 | T1058T | acC | acA | 1 | 1 | B.1.623 | 0.000536 |
ORF1ab/nsp3 | 1058 | T1058del | ACC | --- | 1 | 1 | B.15 | 0.017544 |
ORF1ab/nsp3 | 1058 | T1058T | acC | acT | 1 | 1 | B.3.1 | 0.001658 |
ORF1ab/nsp3 | 1058 | T1058T | acC | acT | 1 | 1 | C.35 | 0.000774 |
ORF1ab/nsp3 | 1058 | T1058T | acC | acT | 1 | 1 | C.39 | 0.018868 |
ORF1ab/nsp3 | 1058 | T1058A | Acc | Gcc | 1 | 1 | P.1 | 0.000016 |
ORF1ab/nsp3 | 1058 | T1058del | ACC | --- | 1 | 1 | P.1 | 0.000016 |
ORF1ab/nsp3 | 1058 | T1058T | acC | acT | 1 | 1 | P.1.16 | 0.000374 |
ORF1ab/nsp3 | 1058 | T1058T | acC | acT | 1 | 1 | P.2 | 0.000187 |
CoV-GLUE is still in development. CoV-GLUE was originally developed as part of COG-UK by Josh Singer using the GLUE framework at the MRC-University of Glasgow Centre for Virus Research (CVR). In 2021 it was redeveloped by Richard Orton to scale to the millions of genome sequences available. We acknowledge support from the MRC (MC_UU_12014/12), WT (220977/Z/20/Z) and UKRI G2P (MR/W005611/1). Please contact Richard Orton with any queries: Richard.Orton@glasgow.ac.uk
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