CoV-GLUE | Mutations | Mutation

CoV-GLUE Mutation: ORF = ORF1ab/nsp3 : CodonNum = 1055

Details of the codons used for the mutation across all lineages (CodonProp is the proportion each codon is used for this AA mutation):

ORFCodonNumMutORF1abMutMutTypeRefCodonMutCodonAACountCodonCountCodonPropGenome Position
ORF1ab/nsp31055Y1055YY1873YsyntaCtaT112541125415882-5884
ORF1ab/nsp31055Y1055HY1873HnonsynTacCac141415882-5884
ORF1ab/nsp31055Y1055delY1873deldelTAC---131315882-5884
ORF1ab/nsp31055Y1055XY1873XnonsyntaCtaA1080.85882-5884
ORF1ab/nsp31055Y1055XY1873XnonsyntaCtaG1010.15882-5884
ORF1ab/nsp31055Y1055XY1873XnonsyntACtGA1010.15882-5884
ORF1ab/nsp31055Y1055CY1873CnonsyntActGc6615882-5884
ORF1ab/nsp31055Y1055FY1873FnonsyntActTc3315882-5884
ORF1ab/nsp31055Y1055del1Y1873del1deltaCta-320.6666675882-5884
ORF1ab/nsp31055Y1055SY1873SnonsyntActCc320.6666675882-5884
ORF1ab/nsp31055Y1055SY1873SnonsynTAcAGc310.3333335882-5884
ORF1ab/nsp31055Y1055del1Y1873del1delTAcC-c310.3333335882-5884
ORF1ab/nsp31055Y1055del2Y1873del2deltACt--2215882-5884
ORF1ab/nsp31055Y1055DY1873DnonsynTacGac2215882-5884
ORF1ab/nsp31055Y1055GY1873GnonsynTAcGGc210.55882-5884
ORF1ab/nsp31055Y1055GY1873GnonsynTACGGA210.55882-5884
ORF1ab/nsp31055Y1055EY1873EnonsynTaCGaA1115882-5884
ORF1ab/nsp31055Y1055NY1873NnonsynTacAac1115882-5884
ORF1ab/nsp31055Y1055LY1873LnonsyntACtTA1115882-5884

Details of the mutation no within lineages (LineageCodonProp is the proportion the codon is observed at, at this particular site, on each lineage):

ORFCodonNumMutRefCodonMutCodonCodonCountAACountLineageLineageCodonProp
ORF1ab/nsp31055Y1055YtaCtaT1125411254All0.002152
ORF1ab/nsp31055Y1055YtaCtaT19151915B.1.1.70.001714
ORF1ab/nsp31055Y1055YtaCtaT11201120B.1.1.2160.997329
ORF1ab/nsp31055Y1055YtaCtaT998998AY.30.009926
ORF1ab/nsp31055Y1055YtaCtaT493493B.1.4740.937262
ORF1ab/nsp31055Y1055YtaCtaT476476B.10.00436
ORF1ab/nsp31055Y1055YtaCtaT437437AY.40.00068
ORF1ab/nsp31055Y1055YtaCtaT413413B.1.1.2140.022904
ORF1ab/nsp31055Y1055YtaCtaT377377P.10.005939
ORF1ab/nsp31055Y1055YtaCtaT339339B.1.617.20.001276
ORF1ab/nsp31055Y1055YtaCtaT280280AM.41
ORF1ab/nsp31055Y1055YtaCtaT252252AY.370.079646
ORF1ab/nsp31055Y1055YtaCtaT252252B.1.20.002219
ORF1ab/nsp31055Y1055YtaCtaT248248AY.290.003912
ORF1ab/nsp31055Y1055YtaCtaT195195B.1.1770.002568
ORF1ab/nsp31055Y1055YtaCtaT190190AY.430.000842
ORF1ab/nsp31055Y1055YtaCtaT189189B.1.10.003429
ORF1ab/nsp31055Y1055YtaCtaT175175B.1.1.1961
ORF1ab/nsp31055Y1055YtaCtaT167167AY.250.001004
ORF1ab/nsp31055Y1055YtaCtaT156156B.1.1.3890.945455
ORF1ab/nsp31055Y1055YtaCtaT108108AY.440.000657
ORF1ab/nsp31055Y1055YtaCtaT9696B.1.438.10.010297
ORF1ab/nsp31055Y1055YtaCtaT9393AY.1030.000577
ORF1ab/nsp31055Y1055YtaCtaT7979B.1.177.460.072544
ORF1ab/nsp31055Y1055YtaCtaT6868AY.1020.001803
ORF1ab/nsp31055Y1055YtaCtaT6868B.1.5260.001598
ORF1ab/nsp31055Y1055YtaCtaT6262AY.260.001755
ORF1ab/nsp31055Y1055YtaCtaT6262C.370.007196
ORF1ab/nsp31055Y1055YtaCtaT6060B.1.4290.001412
ORF1ab/nsp31055Y1055YtaCtaT5656B.1.3690.015973
ORF1ab/nsp31055Y1055YtaCtaT5252AY.470.001617
ORF1ab/nsp31055Y1055YtaCtaT5151B.1.3480.927273
ORF1ab/nsp31055Y1055YtaCtaT4545B.1.1.1740.152027
ORF1ab/nsp31055Y1055YtaCtaT4545B.1.1.5190.001787
ORF1ab/nsp31055Y1055YtaCtaT4444B.1.3510.001308
ORF1ab/nsp31055Y1055YtaCtaT4242B.1.1.2220.008568
ORF1ab/nsp31055Y1055YtaCtaT4242B.1.6370.003069
ORF1ab/nsp31055Y1055YtaCtaT4141B.1.6161
ORF1ab/nsp31055Y1055YtaCtaT3737AY.7.10.00417
ORF1ab/nsp31055Y1055YtaCtaT3333B.1.6210.002921
ORF1ab/nsp31055Y1055YtaCtaT3131B.1.1600.000967
ORF1ab/nsp31055Y1055YtaCtaT3131B.1.2400.006682
ORF1ab/nsp31055Y1055YtaCtaT3030AM.31
ORF1ab/nsp31055Y1055YtaCtaT2626AY.1180.001629
ORF1ab/nsp31055Y1055YtaCtaT2525B.1.1.1760.010984
ORF1ab/nsp31055Y1055YtaCtaT2424B.1.177.120.003641
ORF1ab/nsp31055Y1055YtaCtaT2323AY.390.000568
ORF1ab/nsp31055Y1055YtaCtaT2323B.1.4270.001161
ORF1ab/nsp31055Y1055YtaCtaT2222AY.910.01607
ORF1ab/nsp31055Y1055YtaCtaT2222B.1.177.750.022893
ORF1ab/nsp31055Y1055YtaCtaT2222B.1.2340.002903
ORF1ab/nsp31055Y1055YtaCtaT2222B.1.4250.065868
ORF1ab/nsp31055Y1055YtaCtaT2121B.1.177.160.013953
ORF1ab/nsp31055Y1055YtaCtaT2121B.1.360.003064
ORF1ab/nsp31055Y1055YtaCtaT2020AY.420.000805
ORF1ab/nsp31055Y1055YtaCtaT1919B.1.6090.009108
ORF1ab/nsp31055Y1055YtaCtaT1919P.1.140.000908
ORF1ab/nsp31055Y1055YtaCtaT1818AY.200.0007
ORF1ab/nsp31055Y1055YtaCtaT1818AY.610.001886
ORF1ab/nsp31055Y1055YtaCtaT1717B.1.1.3170.006999
ORF1ab/nsp31055Y1055YtaCtaT1717P.1.70.005428
ORF1ab/nsp31055Y1055YtaCtaT1616AY.10.006332
ORF1ab/nsp31055Y1055YtaCtaT1616AY.1210.002165
ORF1ab/nsp31055Y1055YtaCtaT1616B.1.2370.079602
ORF1ab/nsp31055Y1055YtaCtaT1515AY.330.001002
ORF1ab/nsp31055Y1055YtaCtaT1515B.1.2430.001044
ORF1ab/nsp31055Y1055YtaCtaT1515B.1.5680.016667
ORF1ab/nsp31055Y1055HTacCac1414All0.000003
ORF1ab/nsp31055Y1055YtaCtaT1414AY.1000.000644
ORF1ab/nsp31055Y1055YtaCtaT1414B.1.1.280.004357
ORF1ab/nsp31055Y1055YtaCtaT1414B.1.2580.000932
ORF1ab/nsp31055Y1055YtaCtaT1414B.1.3890.014028
ORF1ab/nsp31055Y1055YtaCtaT1414P.1.150.003253
ORF1ab/nsp31055Y1055delTAC---1313All0.000002
ORF1ab/nsp31055Y1055YtaCtaT1313AY.50.000268
ORF1ab/nsp31055Y1055YtaCtaT1313AY.98.10.00063
ORF1ab/nsp31055Y1055YtaCtaT1212B.1.177.600.002621
ORF1ab/nsp31055Y1055YtaCtaT1212B.1.617.10.001548
ORF1ab/nsp31055Y1055YtaCtaT1111C.180.028497
ORF1ab/nsp31055Y1055XtaCtaA810All0.000002
ORF1ab/nsp31055Y1055XtACtGA110All0
ORF1ab/nsp31055Y1055XtaCtaG110All0
ORF1ab/nsp31055Y1055YtaCtaT1010AY.1170.000845
ORF1ab/nsp31055Y1055YtaCtaT1010AY.1200.000372
ORF1ab/nsp31055Y1055YtaCtaT1010AY.46.40.001645
ORF1ab/nsp31055Y1055YtaCtaT1010D.20.00075
ORF1ab/nsp31055Y1055YtaCtaT1010P.1.80.047847
ORF1ab/nsp31055Y1055YtaCtaT1010P.20.001866
ORF1ab/nsp31055Y1055YtaCtaT99AM.21
ORF1ab/nsp31055Y1055YtaCtaT99AY.4.2.10.001341
ORF1ab/nsp31055Y1055YtaCtaT99AY.4.50.000967
ORF1ab/nsp31055Y1055YtaCtaT99AY.450.001095
ORF1ab/nsp31055Y1055YtaCtaT99AY.900.00616
ORF1ab/nsp31055Y1055YtaCtaT99B0.00115
ORF1ab/nsp31055Y1055YtaCtaT88AY.460.000833
ORF1ab/nsp31055Y1055YtaCtaT88AY.850.003417
ORF1ab/nsp31055Y1055YtaCtaT88B.1.1.3680.024691
ORF1ab/nsp31055Y1055YtaCtaT88B.1.2210.000568
ORF1ab/nsp31055Y1055YtaCtaT88P.1.120.003872
ORF1ab/nsp31055Y1055YtaCtaT77AM.10.777778
ORF1ab/nsp31055Y1055YtaCtaT77AY.1190.000247
ORF1ab/nsp31055Y1055YtaCtaT77AY.340.000679
ORF1ab/nsp31055Y1055YtaCtaT77AY.350.001631
ORF1ab/nsp31055Y1055YtaCtaT77B.1.1570.020896
ORF1ab/nsp31055Y1055YtaCtaT77B.1.177.730.003964
ORF1ab/nsp31055Y1055YtaCtaT77B.1.6030.074468
ORF1ab/nsp31055Y1055YtaCtaT77B.1.6280.002467
ORF1ab/nsp31055Y1055YtaCtaT66AD.20.001314
ORF1ab/nsp31055Y1055CtActGc66All0.000001
ORF1ab/nsp31055Y1055YtaCtaT66AY.120.10.001926
ORF1ab/nsp31055Y1055YtaCtaT66AY.230.000418
ORF1ab/nsp31055Y1055YtaCtaT66AY.4.20.00013
ORF1ab/nsp31055Y1055YtaCtaT66AY.980.000474
ORF1ab/nsp31055Y1055YtaCtaT66B.1.177.70.000989
ORF1ab/nsp31055Y1055YtaCtaT66B.1.214.20.003597
ORF1ab/nsp31055Y1055YtaCtaT66B.1.3960.004234
ORF1ab/nsp31055Y1055YtaCtaT66B.1.5730.036585
ORF1ab/nsp31055Y1055YtaCtaT66C.36.30.003403
ORF1ab/nsp31055Y1055HTacCac66P.10.000095
ORF1ab/nsp31055Y1055YtaCtaT55A.2.5.30.051546
ORF1ab/nsp31055Y1055YtaCtaT55AY.1160.001434
ORF1ab/nsp31055Y1055YtaCtaT55AY.270.000324
ORF1ab/nsp31055Y1055YtaCtaT55AY.34.10.00255
ORF1ab/nsp31055Y1055YtaCtaT55AY.9.20.000184
ORF1ab/nsp31055Y1055YtaCtaT55B.1.1.250.002843
ORF1ab/nsp31055Y1055YtaCtaT55B.1.177.150.003155
ORF1ab/nsp31055Y1055YtaCtaT55B.1.2410.004058
ORF1ab/nsp31055Y1055YtaCtaT55B.1.258.170.00052
ORF1ab/nsp31055Y1055YtaCtaT55B.1.5750.001517
ORF1ab/nsp31055Y1055YtaCtaT55B.310.018657
ORF1ab/nsp31055Y1055YtaCtaT55P.70.021834
ORF1ab/nsp31055Y1055YtaCtaT55Q.10.000632
ORF1ab/nsp31055Y1055YtaCtaT55Q.80.000825
ORF1ab/nsp31055Y1055XtaCtaA340.166667
ORF1ab/nsp31055Y1055XtACtGA140.055556
ORF1ab/nsp31055Y1055YtaCtaT44A0.001548
ORF1ab/nsp31055Y1055YtaCtaT44AY.300.001583
ORF1ab/nsp31055Y1055YtaCtaT44AY.380.001997
ORF1ab/nsp31055Y1055YtaCtaT44AY.5.40.001107
ORF1ab/nsp31055Y1055YtaCtaT44AY.60.000165
ORF1ab/nsp31055Y1055YtaCtaT44AY.660.004278
ORF1ab/nsp31055Y1055YtaCtaT44AY.690.000747
ORF1ab/nsp31055Y1055YtaCtaT44AY.810.007968
ORF1ab/nsp31055Y1055YtaCtaT44AY.99.20.000369
ORF1ab/nsp31055Y1055YtaCtaT44B.1.1.10.001307
ORF1ab/nsp31055Y1055YtaCtaT44B.1.1.1700.004988
ORF1ab/nsp31055Y1055YtaCtaT44B.1.1.1890.006051
ORF1ab/nsp31055Y1055YtaCtaT44B.1.177.210.000306
ORF1ab/nsp31055Y1055YtaCtaT44B.1.177.30.030534
ORF1ab/nsp31055Y1055YtaCtaT44B.1.177.530.009569
ORF1ab/nsp31055Y1055YtaCtaT44B.1.177.810.000757
ORF1ab/nsp31055Y1055YtaCtaT44B.1.258.140.003922
ORF1ab/nsp31055Y1055YtaCtaT44B.1.36.160.005698
ORF1ab/nsp31055Y1055YtaCtaT44B.1.5250.000453
ORF1ab/nsp31055Y1055YtaCtaT44C.160.004242
ORF1ab/nsp31055Y1055YtaCtaT44P.1.10.001271
ORF1ab/nsp31055Y1055YtaCtaT44P.40.015209
ORF1ab/nsp31055Y1055YtaCtaT33A.2.5.20.004717
ORF1ab/nsp31055Y1055FtActTc33All0.000001
ORF1ab/nsp31055Y1055del1taCta-23All0
ORF1ab/nsp31055Y1055StActCc23All0
ORF1ab/nsp31055Y1055del1TAcC-c13All0
ORF1ab/nsp31055Y1055STAcAGc13All0
ORF1ab/nsp31055Y1055YtaCtaT33AY.1130.000427
ORF1ab/nsp31055Y1055YtaCtaT33AY.1140.000693
ORF1ab/nsp31055Y1055YtaCtaT33AY.130.000483
ORF1ab/nsp31055Y1055YtaCtaT33AY.39.1.10.002174
ORF1ab/nsp31055Y1055YtaCtaT33AY.540.000286
ORF1ab/nsp31055Y1055YtaCtaT33AY.70.000588
ORF1ab/nsp31055Y1055YtaCtaT33AY.750.000168
ORF1ab/nsp31055Y1055YtaCtaT33B.1.1.100.003344
ORF1ab/nsp31055Y1055YtaCtaT33B.1.1.2610.025862
ORF1ab/nsp31055Y1055YtaCtaT33B.1.1.2630.004673
ORF1ab/nsp31055Y1055YtaCtaT33B.1.1.4340.001046
ORF1ab/nsp31055Y1055YtaCtaT33B.1.1.500.002037
ORF1ab/nsp31055Y1055YtaCtaT33B.1.1110.003525
ORF1ab/nsp31055Y1055YtaCtaT33B.1.177.40.000633
ORF1ab/nsp31055Y1055YtaCtaT33B.1.177.440.001557
ORF1ab/nsp31055Y1055YtaCtaT33B.1.177.620.003576
ORF1ab/nsp31055Y1055YtaCtaT33B.1.177.820.001432
ORF1ab/nsp31055Y1055YtaCtaT33B.1.2010.017045
ORF1ab/nsp31055Y1055YtaCtaT33B.1.3110.000824
ORF1ab/nsp31055Y1055YtaCtaT33B.1.351.50.001799
ORF1ab/nsp31055Y1055YtaCtaT33B.1.3560.005181
ORF1ab/nsp31055Y1055YtaCtaT33B.1.36.180.001261
ORF1ab/nsp31055Y1055YtaCtaT33B.1.36.290.001552
ORF1ab/nsp31055Y1055YtaCtaT33B.1.4000.001287
ORF1ab/nsp31055Y1055YtaCtaT33B.1.4260.003027
ORF1ab/nsp31055Y1055YtaCtaT33B.1.4780.035294
ORF1ab/nsp31055Y1055YtaCtaT33B.1.5960.000261
ORF1ab/nsp31055Y1055YtaCtaT33P.1.170.000485
ORF1ab/nsp31055Y1055YtaCtaT33P.1.20.003468
ORF1ab/nsp31055Y1055YtaCtaT33P.60.009434
ORF1ab/nsp31055Y1055GTAcGGc120.055556
ORF1ab/nsp31055Y1055GTACGGA120.055556
ORF1ab/nsp31055Y1055YtaCtaT22A.10.000564
ORF1ab/nsp31055Y1055del2tACt--22All0
ORF1ab/nsp31055Y1055DTacGac22All0
ORF1ab/nsp31055Y1055GTAcGGc12All0
ORF1ab/nsp31055Y1055GTACGGA12All0
ORF1ab/nsp31055Y1055YtaCtaT22AY.100.00106
ORF1ab/nsp31055Y1055YtaCtaT22AY.1060.00067
ORF1ab/nsp31055Y1055YtaCtaT22AY.1100.000225
ORF1ab/nsp31055Y1055YtaCtaT22AY.3.10.000171
ORF1ab/nsp31055Y1055YtaCtaT22AY.39.10.000079
ORF1ab/nsp31055Y1055YtaCtaT22AY.5.30.000675
ORF1ab/nsp31055Y1055YtaCtaT22AY.520.001629
ORF1ab/nsp31055Y1055YtaCtaT22AY.75.10.000361
ORF1ab/nsp31055Y1055YtaCtaT22AY.920.000575
ORF1ab/nsp31055Y1055YtaCtaT22AY.950.001522
ORF1ab/nsp31055Y1055YtaCtaT22AZ.2.10.01626
ORF1ab/nsp31055Y1055YtaCtaT22AZ.50.007018
ORF1ab/nsp31055Y1055XtaCtaA22B.10.000018
ORF1ab/nsp31055Y1055YtaCtaT22B.1.1.2790.002242
ORF1ab/nsp31055Y1055YtaCtaT22B.1.1.3260.003521
ORF1ab/nsp31055Y1055YtaCtaT22B.1.1.370.000386
ORF1ab/nsp31055Y1055YtaCtaT22B.1.1.3720.001377
ORF1ab/nsp31055Y1055YtaCtaT22B.1.1.5230.003125
ORF1ab/nsp31055Y1055YtaCtaT22B.1.110.30.001437
ORF1ab/nsp31055Y1055YtaCtaT22B.1.1190.021053
ORF1ab/nsp31055Y1055YtaCtaT22B.1.177.330.003289
ORF1ab/nsp31055Y1055YtaCtaT22B.1.177.430.002954
ORF1ab/nsp31055Y1055YtaCtaT22B.1.2890.005319
ORF1ab/nsp31055Y1055YtaCtaT22B.1.3060.011429
ORF1ab/nsp31055Y1055YtaCtaT22B.1.351.30.001753
ORF1ab/nsp31055Y1055delTAC---22B.1.360.000292
ORF1ab/nsp31055Y1055YtaCtaT22B.1.36.250.004415
ORF1ab/nsp31055Y1055YtaCtaT22B.1.4330.00639
ORF1ab/nsp31055Y1055YtaCtaT22B.1.466.20.000782
ORF1ab/nsp31055Y1055YtaCtaT22B.1.4760.2
ORF1ab/nsp31055Y1055YtaCtaT22B.1.5230.004902
ORF1ab/nsp31055Y1055YtaCtaT22B.1.5650.001621
ORF1ab/nsp31055Y1055YtaCtaT22B.1.5760.001813
ORF1ab/nsp31055Y1055YtaCtaT22B.1.6340.006849
ORF1ab/nsp31055Y1055YtaCtaT22B.1.930.001867
ORF1ab/nsp31055Y1055YtaCtaT22C.10.004785
ORF1ab/nsp31055Y1055YtaCtaT22C.390.037736
ORF1ab/nsp31055Y1055FtActTc110.055556
ORF1ab/nsp31055Y1055ETaCGaA110.055556
ORF1ab/nsp31055Y1055DTacGac110.055556
ORF1ab/nsp31055Y1055CtActGc110.055556
ORF1ab/nsp31055Y1055LtACtTA110.055556
ORF1ab/nsp31055Y1055YtaCtaT11A.2.50.000499
ORF1ab/nsp31055Y1055YtaCtaT11A.23.10.000704
ORF1ab/nsp31055Y1055YtaCtaT11AE.30.032258
ORF1ab/nsp31055Y1055YtaCtaT11AE.80.000489
ORF1ab/nsp31055Y1055ETaCGaA11All0
ORF1ab/nsp31055Y1055NTacAac11All0
ORF1ab/nsp31055Y1055LtACtTA11All0
ORF1ab/nsp31055Y1055YtaCtaT11AU.30.00211
ORF1ab/nsp31055Y1055YtaCtaT11AY.1110.000183
ORF1ab/nsp31055Y1055YtaCtaT11AY.116.10.000311
ORF1ab/nsp31055Y1055YtaCtaT11AY.120.000316
ORF1ab/nsp31055Y1055YtaCtaT11AY.160.00038
ORF1ab/nsp31055Y1055YtaCtaT11AY.16.10.00047
ORF1ab/nsp31055Y1055YtaCtaT11AY.29.10.000221
ORF1ab/nsp31055Y1055delTAC---11AY.360.000148
ORF1ab/nsp31055Y1055YtaCtaT11AY.360.000148
ORF1ab/nsp31055Y1055HTacCac11AY.40.000002
ORF1ab/nsp31055Y1055delTAC---11AY.4.30.000842
ORF1ab/nsp31055Y1055YtaCtaT11AY.4.40.000409
ORF1ab/nsp31055Y1055YtaCtaT11AY.400.000964
ORF1ab/nsp31055Y1055delTAC---11AY.420.00004
ORF1ab/nsp31055Y1055HTacCac11AY.430.000004
ORF1ab/nsp31055Y1055del1TAcC-c11AY.440.000006
ORF1ab/nsp31055Y1055YtaCtaT11AY.46.10.001027
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ORF1ab/nsp31055Y1055YtaCtaT11B.6.60.000889
ORF1ab/nsp31055Y1055YtaCtaT11C.1.20.004255
ORF1ab/nsp31055Y1055STAcAGc11C.350.000774
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ORF1ab/nsp31055Y1055YtaCtaT11C.360.000911
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ORF1ab/nsp31055Y1055YtaCtaT11C.80.004464
ORF1ab/nsp31055Y1055YtaCtaT11N.30.005814
ORF1ab/nsp31055Y1055delTAC---11P.10.000016
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ORF1ab/nsp31055Y1055YtaCtaT11Q.30.000145
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ORF1ab/nsp31055Y1055YtaCtaT11U.30.003861
ORF1ab/nsp31055Y1055YtaCtaT11Z.10.00289