CoV-GLUE | Mutations | Mutation

CoV-GLUE Mutation: ORF = ORF1ab/nsp3 : CodonNum = 1042

Details of the codons used for the mutation across all lineages (CodonProp is the proportion each codon is used for this AA mutation):

ORFCodonNumMutORF1abMutMutTypeRefCodonMutCodonAACountCodonCountCodonPropGenome Position
ORF1ab/nsp31042K1042EK1860EnonsynAaaGaa24924915843-5845
ORF1ab/nsp31042K1042KK1860KsynaaAaaG20620615843-5845
ORF1ab/nsp31042K1042NK1860NnonsynaaAaaT1911300.6806285843-5845
ORF1ab/nsp31042K1042NK1860NnonsynaaAaaC191610.3193725843-5845
ORF1ab/nsp31042K1042RK1860RnonsynaAaaGa959515843-5845
ORF1ab/nsp31042K1042TK1860TnonsynaAaaCa595915843-5845
ORF1ab/nsp31042K1042delK1860deldelAAA---161615843-5845
ORF1ab/nsp31042K1042IK1860InonsynaAaaTa141415843-5845
ORF1ab/nsp31042K1042del1K1860del1delAaa-aa760.8571435843-5845
ORF1ab/nsp31042K1042del1K1860del1delAAA-GT710.1428575843-5845
ORF1ab/nsp31042K1042QK1860QnonsynAaaCaa2215843-5845
ORF1ab/nsp31042K1042XK1860XnonsynAaaTaa1115843-5845

Details of the mutation no within lineages (LineageCodonProp is the proportion the codon is observed at, at this particular site, on each lineage):

ORFCodonNumMutRefCodonMutCodonCodonCountAACountLineageLineageCodonProp
ORF1ab/nsp31042K1042EAaaGaa249249All0.000048
ORF1ab/nsp31042K1042EAaaGaa223223B.1.1.70.0002
ORF1ab/nsp31042K1042KaaAaaG206206All0.000039
ORF1ab/nsp31042K1042NaaAaaT130191All0.000025
ORF1ab/nsp31042K1042NaaAaaC61191All0.000012
ORF1ab/nsp31042K1042RaAaaGa9595All0.000018
ORF1ab/nsp31042K1042KaaAaaG6464B.1.1.70.000057
ORF1ab/nsp31042K1042TaAaaCa5959All0.000011
ORF1ab/nsp31042K1042TaAaaCa5252B.1.3480.945455
ORF1ab/nsp31042K1042NaaAaaT3336AY.430.000146
ORF1ab/nsp31042K1042NaaAaaC336AY.430.000013
ORF1ab/nsp31042K1042RaAaaGa3434B.1.1.2980.02931
ORF1ab/nsp31042K1042KaaAaaG3131B.1.10.000562
ORF1ab/nsp31042K1042NaaAaaC2828AY.4.2.10.004172
ORF1ab/nsp31042K1042KaaAaaG2222AY.40.000034
ORF1ab/nsp31042K1042KaaAaaG1919B.1.20.000167
ORF1ab/nsp31042K1042delAAA---1616All0.000003
ORF1ab/nsp31042K1042NaaAaaT1515B.1.10.000272
ORF1ab/nsp31042K1042IaAaaTa1414All0.000003
ORF1ab/nsp31042K1042NaaAaaT913B.1.1.70.000008
ORF1ab/nsp31042K1042NaaAaaC413B.1.1.70.000004
ORF1ab/nsp31042K1042IaAaaTa1111B.1.1.70.00001
ORF1ab/nsp31042K1042KaaAaaG1111B.1.1770.000145
ORF1ab/nsp31042K1042NaaAaaC59AY.340.000485
ORF1ab/nsp31042K1042NaaAaaT49AY.340.000388
ORF1ab/nsp31042K1042NaaAaaC89B.1.1.5190.000318
ORF1ab/nsp31042K1042NaaAaaT19B.1.1.5190.00004
ORF1ab/nsp31042K1042del1Aaa-aa67All0.000001
ORF1ab/nsp31042K1042del1AAA-GT17All0
ORF1ab/nsp31042K1042NaaAaaT77AY.460.000729
ORF1ab/nsp31042K1042RaAaaGa77B.1.1.70.000006
ORF1ab/nsp31042K1042KaaAaaG66AY.1030.000037
ORF1ab/nsp31042K1042NaaAaaC46AY.390.000099
ORF1ab/nsp31042K1042NaaAaaT26AY.390.000049
ORF1ab/nsp31042K1042NaaAaaT66AY.420.000241
ORF1ab/nsp31042K1042NaaAaaT66B0.000767
ORF1ab/nsp31042K1042KaaAaaG66B.1.617.20.000023
ORF1ab/nsp31042K1042RaAaaGa66B.1.6370.000438
ORF1ab/nsp31042K1042KaaAaaG66P.10.000095
ORF1ab/nsp31042K1042EAaaGaa55AY.1030.000031
ORF1ab/nsp31042K1042RaAaaGa55AY.230.000349
ORF1ab/nsp31042K1042RaAaaGa55AY.30.00005
ORF1ab/nsp31042K1042RaAaaGa55AY.410.00147
ORF1ab/nsp31042K1042NaaAaaT55C.36.30.002836
ORF1ab/nsp31042K1042NaaAaaT44AY.610.000419
ORF1ab/nsp31042K1042KaaAaaG44B.10.000037
ORF1ab/nsp31042K1042delAAA---44B.1.1.70.000004
ORF1ab/nsp31042K1042RaAaaGa44B.1.177.860.000734
ORF1ab/nsp31042K1042RaAaaGa44B.1.20.000035
ORF1ab/nsp31042K1042EAaaGaa44B.1.617.20.000015
ORF1ab/nsp31042K1042NaaAaaT34B.1.617.20.000011
ORF1ab/nsp31042K1042NaaAaaC14B.1.617.20.000004
ORF1ab/nsp31042K1042RaAaaGa33AY.1030.000019
ORF1ab/nsp31042K1042KaaAaaG33AY.1130.000427
ORF1ab/nsp31042K1042EAaaGaa33AY.1200.000112
ORF1ab/nsp31042K1042EAaaGaa33AY.40.000005
ORF1ab/nsp31042K1042RaAaaGa33AY.4.20.000065
ORF1ab/nsp31042K1042EAaaGaa33AY.430.000013
ORF1ab/nsp31042K1042NaaAaaT33AY.5.40.00083
ORF1ab/nsp31042K1042NaaAaaT33AY.9.10.000251
ORF1ab/nsp31042K1042NaaAaaT33AY.98.10.000145
ORF1ab/nsp31042K1042KaaAaaG33B.1.5260.000071
ORF1ab/nsp31042K1042KaaAaaG33D.20.000225
ORF1ab/nsp31042K1042QAaaCaa22All0
ORF1ab/nsp31042K1042KaaAaaG22AY.1180.000125
ORF1ab/nsp31042K1042TaAaaCa22AY.250.000012
ORF1ab/nsp31042K1042KaaAaaG22AY.250.000012
ORF1ab/nsp31042K1042RaAaaGa22AY.40.000003
ORF1ab/nsp31042K1042NaaAaaC22AY.40.000003
ORF1ab/nsp31042K1042KaaAaaG22AY.440.000012
ORF1ab/nsp31042K1042NaaAaaT22AY.620.000871
ORF1ab/nsp31042K1042NaaAaaT22AY.670.000929
ORF1ab/nsp31042K1042NaaAaaT22AY.7.20.001119
ORF1ab/nsp31042K1042NaaAaaT22B.10.000018
ORF1ab/nsp31042K1042TaAaaCa22B.10.000018
ORF1ab/nsp31042K1042EAaaGaa22B.10.000018
ORF1ab/nsp31042K1042del1AAA-GT12B.1.20.000009
ORF1ab/nsp31042K1042del1Aaa-aa12B.1.20.000009
ORF1ab/nsp31042K1042delAAA---22B.1.360.000292
ORF1ab/nsp31042K1042RaAaaGa22B.60.00182
ORF1ab/nsp31042K1042NaaAaaC12P.10.000016
ORF1ab/nsp31042K1042NaaAaaT12P.10.000016
ORF1ab/nsp31042K1042XAaaTaa11All0
ORF1ab/nsp31042K1042KaaAaaG11AY.1060.000335
ORF1ab/nsp31042K1042NaaAaaC11AY.1080.001103
ORF1ab/nsp31042K1042KaaAaaG11AY.1170.000085
ORF1ab/nsp31042K1042RaAaaGa11AY.1180.000063
ORF1ab/nsp31042K1042del1Aaa-aa11AY.1190.000035
ORF1ab/nsp31042K1042NaaAaaT11AY.1200.000037
ORF1ab/nsp31042K1042del1Aaa-aa11AY.1200.000037
ORF1ab/nsp31042K1042KaaAaaG11AY.200.000039
ORF1ab/nsp31042K1042EAaaGaa11AY.230.00007
ORF1ab/nsp31042K1042NaaAaaC11AY.250.000006
ORF1ab/nsp31042K1042EAaaGaa11AY.250.000006
ORF1ab/nsp31042K1042RaAaaGa11AY.250.000006
ORF1ab/nsp31042K1042del1Aaa-aa11AY.260.000028
ORF1ab/nsp31042K1042NaaAaaT11AY.260.000028
ORF1ab/nsp31042K1042KaaAaaG11AY.30.00001
ORF1ab/nsp31042K1042IaAaaTa11AY.30.00001
ORF1ab/nsp31042K1042delAAA---11AY.360.000148
ORF1ab/nsp31042K1042IaAaaTa11AY.40.000002
ORF1ab/nsp31042K1042delAAA---11AY.4.30.000842
ORF1ab/nsp31042K1042NaaAaaT11AY.4.50.000107
ORF1ab/nsp31042K1042delAAA---11AY.420.00004
ORF1ab/nsp31042K1042NaaAaaC11AY.440.000006
ORF1ab/nsp31042K1042EAaaGaa11AY.440.000006
ORF1ab/nsp31042K1042KaaAaaG11AY.46.40.000165
ORF1ab/nsp31042K1042KaaAaaG11AY.470.000031
ORF1ab/nsp31042K1042KaaAaaG11AY.480.000465
ORF1ab/nsp31042K1042IaAaaTa11AY.530.000288
ORF1ab/nsp31042K1042KaaAaaG11AY.580.000907
ORF1ab/nsp31042K1042NaaAaaT11AY.680.000274
ORF1ab/nsp31042K1042NaaAaaT11AY.700.000209
ORF1ab/nsp31042K1042delAAA---11AY.710.000475
ORF1ab/nsp31042K1042delAAA---11AY.850.000427
ORF1ab/nsp31042K1042RaAaaGa11AY.9.10.000084
ORF1ab/nsp31042K1042KaaAaaG11AY.9.20.000037
ORF1ab/nsp31042K1042del1Aaa-aa11AY.9.20.000037
ORF1ab/nsp31042K1042NaaAaaT11AY.980.000079
ORF1ab/nsp31042K1042TaAaaCa11B0.000128
ORF1ab/nsp31042K1042KaaAaaG11B0.000128
ORF1ab/nsp31042K1042RaAaaGa11B.10.000009
ORF1ab/nsp31042K1042RaAaaGa11B.1.10.000018
ORF1ab/nsp31042K1042NaaAaaT11B.1.1.100.001115
ORF1ab/nsp31042K1042delAAA---11B.1.1.1390.022727
ORF1ab/nsp31042K1042NaaAaaT11B.1.1.1610.003534
ORF1ab/nsp31042K1042RaAaaGa11B.1.1.1610.003534
ORF1ab/nsp31042K1042EAaaGaa11B.1.1.3170.000412
ORF1ab/nsp31042K1042KaaAaaG11B.1.1.3720.000689
ORF1ab/nsp31042K1042NaaAaaT11B.1.1.5120.028571
ORF1ab/nsp31042K1042KaaAaaG11B.1.1.5190.00004
ORF1ab/nsp31042K1042delAAA---11B.1.1.630.000386
ORF1ab/nsp31042K1042NaaAaaT11B.1.1600.000031
ORF1ab/nsp31042K1042KaaAaaG11B.1.1600.000031
ORF1ab/nsp31042K1042KaaAaaG11B.1.160.140.002119
ORF1ab/nsp31042K1042KaaAaaG11B.1.160.160.000929
ORF1ab/nsp31042K1042RaAaaGa11B.1.1770.000013
ORF1ab/nsp31042K1042QAaaCaa11B.1.1770.000013
ORF1ab/nsp31042K1042EAaaGaa11B.1.1770.000013
ORF1ab/nsp31042K1042RaAaaGa11B.1.177.160.000664
ORF1ab/nsp31042K1042NaaAaaT11B.1.177.750.001041
ORF1ab/nsp31042K1042NaaAaaT11B.1.177.830.001481
ORF1ab/nsp31042K1042KaaAaaG11B.1.177.850.005435
ORF1ab/nsp31042K1042TaAaaCa11B.1.20.000009
ORF1ab/nsp31042K1042NaaAaaT11B.1.20.000009
ORF1ab/nsp31042K1042KaaAaaG11B.1.2210.000071
ORF1ab/nsp31042K1042NaaAaaC11B.1.2430.00007
ORF1ab/nsp31042K1042delAAA---11B.1.2580.000067
ORF1ab/nsp31042K1042NaaAaaT11B.1.258.140.00098
ORF1ab/nsp31042K1042NaaAaaT11B.1.3490.000715
ORF1ab/nsp31042K1042KaaAaaG11B.1.3510.00003
ORF1ab/nsp31042K1042RaAaaGa11B.1.360.000146
ORF1ab/nsp31042K1042RaAaaGa11B.1.4040.001302
ORF1ab/nsp31042K1042NaaAaaT11B.1.4290.000024
ORF1ab/nsp31042K1042NaaAaaC11B.1.4970.000315
ORF1ab/nsp31042K1042RaAaaGa11B.1.5170.000427
ORF1ab/nsp31042K1042RaAaaGa11B.1.5960.000087
ORF1ab/nsp31042K1042KaaAaaG11B.1.5960.000087
ORF1ab/nsp31042K1042del1Aaa-aa11B.1.617.20.000004
ORF1ab/nsp31042K1042RaAaaGa11B.1.617.20.000004
ORF1ab/nsp31042K1042QAaaCaa11B.1.617.20.000004
ORF1ab/nsp31042K1042delAAA---11B.1.617.20.000004
ORF1ab/nsp31042K1042TaAaaCa11B.1.617.20.000004
ORF1ab/nsp31042K1042RaAaaGa11B.1.6210.000089
ORF1ab/nsp31042K1042delAAA---11B.150.017544
ORF1ab/nsp31042K1042XAaaTaa11C.350.000774
ORF1ab/nsp31042K1042EAaaGaa11C.350.000774
ORF1ab/nsp31042K1042KaaAaaG11C.350.000774
ORF1ab/nsp31042K1042KaaAaaG11C.370.000116
ORF1ab/nsp31042K1042NaaAaaT11P.1.10.000318
ORF1ab/nsp31042K1042RaAaaGa11P.1.100.000269
ORF1ab/nsp31042K1042KaaAaaG11P.1.150.000232