CoV-GLUE Mutation

CoV-GLUE Mutation: ORF = ORF1ab/nsp3 : CodonNum = 1036

Details of the codons used for the mutation across all lineages (CodonProp is the proportion each codon is used for this AA mutation):

ORF	CodonNum	Mut	ORF1abMut	MutType	RefCodon	MutCodon	AACount	CodonCount	CodonProp	Genome Position
ORF1ab/nsp3	1036	T1036I	T1854I	nonsyn	aCa	aTa	8242	8242	1	5825-5827
ORF1ab/nsp3	1036	T1036T	T1854T	syn	acA	acG	117	92	0.786325	5825-5827
ORF1ab/nsp3	1036	T1036T	T1854T	syn	acA	acT	117	23	0.196581	5825-5827
ORF1ab/nsp3	1036	T1036T	T1854T	syn	acA	acC	117	2	0.017094	5825-5827
ORF1ab/nsp3	1036	T1036A	T1854A	nonsyn	Aca	Gca	101	101	1	5825-5827
ORF1ab/nsp3	1036	T1036K	T1854K	nonsyn	aCa	aAa	88	87	0.988636	5825-5827
ORF1ab/nsp3	1036	T1036K	T1854K	nonsyn	aCA	aAG	88	1	0.0113636	5825-5827
ORF1ab/nsp3	1036	T1036del	T1854del	del	ACA	---	38	38	1	5825-5827
ORF1ab/nsp3	1036	T1036del1	T1854del1	del	acA	ac-	15	10	0.666667	5825-5827
ORF1ab/nsp3	1036	T1036del1	T1854del1	del	Aca	-ca	15	3	0.2	5825-5827
ORF1ab/nsp3	1036	T1036del1	T1854del1	del	aCa	a-a	15	2	0.133333	5825-5827
ORF1ab/nsp3	1036	T1036S	T1854S	nonsyn	Aca	Tca	4	4	1	5825-5827
ORF1ab/nsp3	1036	T1036V	T1854V	nonsyn	ACa	GTa	1	1	1	5825-5827
ORF1ab/nsp3	1036	T1036P	T1854P	nonsyn	Aca	Cca	1	1	1	5825-5827
ORF1ab/nsp3	1036	T1036L	T1854L	nonsyn	ACA	CTT	1	1	1	5825-5827

Details of the mutation no within lineages (LineageCodonProp is the proportion the codon is observed at, at this particular site, on each lineage):

ORF	CodonNum	Mut	RefCodon	MutCodon	CodonCount	AACount	Lineage	LineageCodonProp
ORF1ab/nsp3	1036	T1036I	aCa	aTa	8242	8242	All	0.001576
ORF1ab/nsp3	1036	T1036I	aCa	aTa	1452	1452	B.1.1.7	0.0013
ORF1ab/nsp3	1036	T1036I	aCa	aTa	970	970	AY.4	0.00151
ORF1ab/nsp3	1036	T1036I	aCa	aTa	585	585	AY.43	0.002592
ORF1ab/nsp3	1036	T1036I	aCa	aTa	429	429	B.1.617.2	0.001615
ORF1ab/nsp3	1036	T1036I	aCa	aTa	325	325	P.1	0.00512
ORF1ab/nsp3	1036	T1036I	aCa	aTa	302	302	B.1.1.214	0.016748
ORF1ab/nsp3	1036	T1036I	aCa	aTa	270	270	B.1.2	0.002377
ORF1ab/nsp3	1036	T1036I	aCa	aTa	218	218	AY.103	0.001354
ORF1ab/nsp3	1036	T1036I	aCa	aTa	188	188	B.1	0.001722
ORF1ab/nsp3	1036	T1036I	aCa	aTa	180	180	AY.102	0.004773
ORF1ab/nsp3	1036	T1036I	aCa	aTa	165	165	AY.44	0.001004
ORF1ab/nsp3	1036	T1036I	aCa	aTa	154	154	AY.23	0.010741
ORF1ab/nsp3	1036	T1036I	aCa	aTa	135	135	AY.25	0.000812
ORF1ab/nsp3	1036	T1036T	acA	acG	92	117	All	0.000018
ORF1ab/nsp3	1036	T1036T	acA	acT	23	117	All	0.000004
ORF1ab/nsp3	1036	T1036T	acA	acC	2	117	All	0
ORF1ab/nsp3	1036	T1036I	aCa	aTa	105	105	AY.3	0.001044
ORF1ab/nsp3	1036	T1036I	aCa	aTa	104	104	B.1.160	0.003244
ORF1ab/nsp3	1036	T1036A	Aca	Gca	101	101	All	0.000019
ORF1ab/nsp3	1036	T1036I	aCa	aTa	101	101	B.1.177	0.00133
ORF1ab/nsp3	1036	T1036I	aCa	aTa	98	98	B.1.1	0.001778
ORF1ab/nsp3	1036	T1036I	aCa	aTa	95	95	AY.39	0.002348
ORF1ab/nsp3	1036	T1036K	aCa	aAa	87	88	All	0.000017
ORF1ab/nsp3	1036	T1036K	aCA	aAG	1	88	All	0
ORF1ab/nsp3	1036	T1036I	aCa	aTa	84	84	B.1.1.284	0.009022
ORF1ab/nsp3	1036	T1036I	aCa	aTa	71	71	AY.4.2	0.00154
ORF1ab/nsp3	1036	T1036I	aCa	aTa	68	68	B.1.160.20	0.607143
ORF1ab/nsp3	1036	T1036I	aCa	aTa	66	66	D.2	0.004953
ORF1ab/nsp3	1036	T1036I	aCa	aTa	57	57	B.1.265	0.072427
ORF1ab/nsp3	1036	T1036I	aCa	aTa	55	55	AY.29	0.000868
ORF1ab/nsp3	1036	T1036I	aCa	aTa	53	53	AY.119	0.001871
ORF1ab/nsp3	1036	T1036I	aCa	aTa	51	51	AY.33	0.003406
ORF1ab/nsp3	1036	T1036I	aCa	aTa	51	51	C.37	0.005919
ORF1ab/nsp3	1036	T1036I	aCa	aTa	50	50	B.1.1.222	0.0102
ORF1ab/nsp3	1036	T1036I	aCa	aTa	48	48	B.52	0.484848
ORF1ab/nsp3	1036	T1036K	aCa	aAa	46	46	B.1.1.7	0.000041
ORF1ab/nsp3	1036	T1036I	aCa	aTa	45	45	B.1.429	0.001059
ORF1ab/nsp3	1036	T1036I	aCa	aTa	42	42	P.1.1	0.013342
ORF1ab/nsp3	1036	T1036I	aCa	aTa	40	40	B.1.177.81	0.007573
ORF1ab/nsp3	1036	T1036I	aCa	aTa	39	39	AY.118	0.002443
ORF1ab/nsp3	1036	T1036I	aCa	aTa	39	39	B.1.351	0.001159
ORF1ab/nsp3	1036	T1036del	ACA	---	38	38	All	0.000007
ORF1ab/nsp3	1036	T1036I	aCa	aTa	37	37	AY.120	0.001376
ORF1ab/nsp3	1036	T1036I	aCa	aTa	37	37	B.1.221	0.002628
ORF1ab/nsp3	1036	T1036I	aCa	aTa	37	37	R.1	0.00333
ORF1ab/nsp3	1036	T1036I	aCa	aTa	33	33	AY.5	0.000681
ORF1ab/nsp3	1036	T1036I	aCa	aTa	33	33	AY.9.2	0.001212
ORF1ab/nsp3	1036	T1036I	aCa	aTa	33	33	B.1.526	0.000776
ORF1ab/nsp3	1036	T1036I	aCa	aTa	31	31	AY.46.4	0.0051
ORF1ab/nsp3	1036	T1036I	aCa	aTa	30	30	AY.26	0.000849
ORF1ab/nsp3	1036	T1036I	aCa	aTa	29	29	B.1.551	0.037419
ORF1ab/nsp3	1036	T1036T	acA	acG	28	28	B.1	0.000256
ORF1ab/nsp3	1036	T1036I	aCa	aTa	28	28	B.1.258.17	0.002911
ORF1ab/nsp3	1036	T1036I	aCa	aTa	27	27	B.1.177.4	0.005699
ORF1ab/nsp3	1036	T1036I	aCa	aTa	25	25	AY.100	0.00115
ORF1ab/nsp3	1036	T1036I	aCa	aTa	24	24	AY.111	0.004396
ORF1ab/nsp3	1036	T1036I	aCa	aTa	24	24	B.1.177.16	0.015947
ORF1ab/nsp3	1036	T1036I	aCa	aTa	22	22	P.2	0.004106
ORF1ab/nsp3	1036	T1036I	aCa	aTa	21	21	B.1.241	0.017045
ORF1ab/nsp3	1036	T1036I	aCa	aTa	21	21	P.1.14	0.001004
ORF1ab/nsp3	1036	T1036I	aCa	aTa	20	20	B.1.427	0.00101
ORF1ab/nsp3	1036	T1036T	acA	acG	19	19	AY.27	0.00123
ORF1ab/nsp3	1036	T1036A	Aca	Gca	19	19	B.1.617.2	0.000072
ORF1ab/nsp3	1036	T1036I	aCa	aTa	18	18	AY.121	0.002436
ORF1ab/nsp3	1036	T1036I	aCa	aTa	18	18	AY.42	0.000724
ORF1ab/nsp3	1036	T1036I	aCa	aTa	18	18	AY.47	0.00056
ORF1ab/nsp3	1036	T1036I	aCa	aTa	18	18	B.1.1.317	0.00741
ORF1ab/nsp3	1036	T1036I	aCa	aTa	17	17	AY.7	0.003332
ORF1ab/nsp3	1036	T1036I	aCa	aTa	16	16	AY.46	0.001665
ORF1ab/nsp3	1036	T1036I	aCa	aTa	16	16	B.1.234	0.002111
ORF1ab/nsp3	1036	T1036del1	acA	ac-	10	15	All	0.000002
ORF1ab/nsp3	1036	T1036del1	Aca	-ca	3	15	All	0.000001
ORF1ab/nsp3	1036	T1036del1	aCa	a-a	2	15	All	0
ORF1ab/nsp3	1036	T1036I	aCa	aTa	15	15	AY.37	0.004741
ORF1ab/nsp3	1036	T1036A	Aca	Gca	15	15	AY.4	0.000023
ORF1ab/nsp3	1036	T1036I	aCa	aTa	15	15	B.1.596	0.001307
ORF1ab/nsp3	1036	T1036I	aCa	aTa	14	14	B.1.621	0.001239
ORF1ab/nsp3	1036	T1036I	aCa	aTa	14	14	P.1.12	0.006776
ORF1ab/nsp3	1036	T1036T	acA	acT	12	13	AY.4	0.000019
ORF1ab/nsp3	1036	T1036T	acA	acG	1	13	AY.4	0.000002
ORF1ab/nsp3	1036	T1036I	aCa	aTa	13	13	B.1.1.306	0.005699
ORF1ab/nsp3	1036	T1036I	aCa	aTa	13	13	B.1.227	0.619048
ORF1ab/nsp3	1036	T1036I	aCa	aTa	12	12	AY.109	0.008876
ORF1ab/nsp3	1036	T1036I	aCa	aTa	12	12	AY.3.1	0.001023
ORF1ab/nsp3	1036	T1036I	aCa	aTa	12	12	AY.38	0.005991
ORF1ab/nsp3	1036	T1036I	aCa	aTa	12	12	AY.6	0.000494
ORF1ab/nsp3	1036	T1036A	Aca	Gca	12	12	B.1.349	0.008578
ORF1ab/nsp3	1036	T1036I	aCa	aTa	11	11	AY.113	0.001566
ORF1ab/nsp3	1036	T1036I	aCa	aTa	11	11	AY.117	0.00093
ORF1ab/nsp3	1036	T1036I	aCa	aTa	11	11	AY.20	0.000428
ORF1ab/nsp3	1036	T1036I	aCa	aTa	11	11	AY.34	0.001067
ORF1ab/nsp3	1036	T1036A	Aca	Gca	11	11	B.1.177	0.000145
ORF1ab/nsp3	1036	T1036I	aCa	aTa	11	11	B.1.243	0.000765
ORF1ab/nsp3	1036	T1036I	aCa	aTa	11	11	B.1.258	0.000732
ORF1ab/nsp3	1036	T1036I	aCa	aTa	11	11	B.1.340	0.04721
ORF1ab/nsp3	1036	T1036I	aCa	aTa	10	10	AY.34.1	0.005099
ORF1ab/nsp3	1036	T1036I	aCa	aTa	10	10	AY.39.1	0.000396
ORF1ab/nsp3	1036	T1036I	aCa	aTa	10	10	AY.57	0.006562
ORF1ab/nsp3	1036	T1036T	acA	acG	10	10	B.1.1.222	0.00204
ORF1ab/nsp3	1036	T1036I	aCa	aTa	10	10	B.1.532	0.062112
ORF1ab/nsp3	1036	T1036K	aCa	aAa	9	9	AY.4	0.000014
ORF1ab/nsp3	1036	T1036I	aCa	aTa	9	9	AY.45	0.001095
ORF1ab/nsp3	1036	T1036I	aCa	aTa	9	9	AY.99.2	0.000829
ORF1ab/nsp3	1036	T1036I	aCa	aTa	9	9	B.1.36.29	0.004656
ORF1ab/nsp3	1036	T1036I	aCa	aTa	9	9	B.1.525	0.001018
ORF1ab/nsp3	1036	T1036I	aCa	aTa	9	9	B.40	0.003279
ORF1ab/nsp3	1036	T1036I	aCa	aTa	8	8	AY.110	0.000902
ORF1ab/nsp3	1036	T1036I	aCa	aTa	8	8	AY.16	0.003037
ORF1ab/nsp3	1036	T1036I	aCa	aTa	8	8	AY.46.6	0.000578
ORF1ab/nsp3	1036	T1036I	aCa	aTa	8	8	AY.64	0.004762
ORF1ab/nsp3	1036	T1036I	aCa	aTa	8	8	AY.75.1	0.001442
ORF1ab/nsp3	1036	T1036I	aCa	aTa	8	8	AY.98.1	0.000387
ORF1ab/nsp3	1036	T1036T	acA	acG	8	8	B.1.2	0.00007
ORF1ab/nsp3	1036	T1036I	aCa	aTa	7	7	AY.4.2.1	0.001043
ORF1ab/nsp3	1036	T1036I	aCa	aTa	7	7	AY.9	0.000473
ORF1ab/nsp3	1036	T1036I	aCa	aTa	7	7	AY.99	0.007345
ORF1ab/nsp3	1036	T1036I	aCa	aTa	7	7	B.1.1.299	0.085366
ORF1ab/nsp3	1036	T1036I	aCa	aTa	7	7	B.1.1.39	0.003568
ORF1ab/nsp3	1036	T1036I	aCa	aTa	7	7	B.1.1.90	0.7
ORF1ab/nsp3	1036	T1036I	aCa	aTa	6	6	AY.116	0.001721
ORF1ab/nsp3	1036	T1036I	aCa	aTa	6	6	AY.24	0.002586
ORF1ab/nsp3	1036	T1036I	aCa	aTa	6	6	AY.27	0.000388
ORF1ab/nsp3	1036	T1036del	ACA	---	6	6	AY.4	0.000009
ORF1ab/nsp3	1036	T1036I	aCa	aTa	6	6	AY.84	0.002625
ORF1ab/nsp3	1036	T1036I	aCa	aTa	6	6	AY.85	0.002563
ORF1ab/nsp3	1036	T1036I	aCa	aTa	6	6	AY.92	0.001724
ORF1ab/nsp3	1036	T1036I	aCa	aTa	6	6	AY.98	0.000474
ORF1ab/nsp3	1036	T1036I	aCa	aTa	6	6	B	0.000767
ORF1ab/nsp3	1036	T1036I	aCa	aTa	6	6	B.1.177.7	0.000989
ORF1ab/nsp3	1036	T1036I	aCa	aTa	6	6	B.1.305	0.012903
ORF1ab/nsp3	1036	T1036I	aCa	aTa	6	6	B.1.311	0.001647
ORF1ab/nsp3	1036	T1036I	aCa	aTa	6	6	B.1.585	0.166667
ORF1ab/nsp3	1036	T1036I	aCa	aTa	6	6	B.1.619	0.005226
ORF1ab/nsp3	1036	T1036I	aCa	aTa	6	6	P.1.7	0.001916
ORF1ab/nsp3	1036	T1036T	acA	acT	5	5	AY.103	0.000031
ORF1ab/nsp3	1036	T1036del	ACA	---	5	5	AY.3	0.00005
ORF1ab/nsp3	1036	T1036K	aCa	aAa	5	5	AY.43	0.000022
ORF1ab/nsp3	1036	T1036I	aCa	aTa	5	5	AY.93	0.001365
ORF1ab/nsp3	1036	T1036I	aCa	aTa	5	5	B.1.1.28	0.001556
ORF1ab/nsp3	1036	T1036I	aCa	aTa	5	5	B.1.1.519	0.000199
ORF1ab/nsp3	1036	T1036del	ACA	---	5	5	B.1.1.7	0.000004
ORF1ab/nsp3	1036	T1036I	aCa	aTa	5	5	B.1.36	0.00073
ORF1ab/nsp3	1036	T1036I	aCa	aTa	5	5	B.1.617.1	0.000645
ORF1ab/nsp3	1036	T1036I	aCa	aTa	4	4	A.2.5.1	0.019231
ORF1ab/nsp3	1036	T1036I	aCa	aTa	4	4	A.21	0.01108
ORF1ab/nsp3	1036	T1036S	Aca	Tca	4	4	All	0.000001
ORF1ab/nsp3	1036	T1036A	Aca	Gca	4	4	AY.100	0.000184
ORF1ab/nsp3	1036	T1036A	Aca	Gca	4	4	AY.103	0.000025
ORF1ab/nsp3	1036	T1036I	aCa	aTa	4	4	AY.14	0.000352
ORF1ab/nsp3	1036	T1036T	acA	acG	4	4	AY.25	0.000024
ORF1ab/nsp3	1036	T1036I	aCa	aTa	4	4	AY.46.5	0.000794
ORF1ab/nsp3	1036	T1036K	aCa	aAa	4	4	B.1	0.000037
ORF1ab/nsp3	1036	T1036I	aCa	aTa	4	4	B.1.1.1	0.001307
ORF1ab/nsp3	1036	T1036I	aCa	aTa	4	4	B.1.1.176	0.001757
ORF1ab/nsp3	1036	T1036I	aCa	aTa	4	4	B.1.1.294	0.005063
ORF1ab/nsp3	1036	T1036I	aCa	aTa	4	4	B.1.1.334	0.065574
ORF1ab/nsp3	1036	T1036I	aCa	aTa	4	4	B.1.1.348	0.003185
ORF1ab/nsp3	1036	T1036I	aCa	aTa	4	4	B.1.1.486	0.006309
ORF1ab/nsp3	1036	T1036A	Aca	Gca	4	4	B.1.1.7	0.000004
ORF1ab/nsp3	1036	T1036I	aCa	aTa	4	4	B.1.177.86	0.000734
ORF1ab/nsp3	1036	T1036del1	acA	ac-	3	4	B.1.2	0.000026
ORF1ab/nsp3	1036	T1036del1	Aca	-ca	1	4	B.1.2	0.000009
ORF1ab/nsp3	1036	T1036I	aCa	aTa	4	4	B.1.391	0.00451
ORF1ab/nsp3	1036	T1036T	acA	acG	4	4	B.1.462	0.028986
ORF1ab/nsp3	1036	T1036I	aCa	aTa	4	4	B.1.517	0.001708
ORF1ab/nsp3	1036	T1036I	aCa	aTa	4	4	B.1.565	0.003241
ORF1ab/nsp3	1036	T1036I	aCa	aTa	4	4	B.1.575	0.001214
ORF1ab/nsp3	1036	T1036I	aCa	aTa	4	4	B.6.6	0.003556
ORF1ab/nsp3	1036	T1036I	aCa	aTa	4	4	Q.2	0.002454
ORF1ab/nsp3	1036	T1036I	aCa	aTa	4	4	Q.3	0.00058
ORF1ab/nsp3	1036	T1036I	aCa	aTa	4	4	Q.4	0.001819
ORF1ab/nsp3	1036	T1036I	aCa	aTa	3	3	A.28	0.007937
ORF1ab/nsp3	1036	T1036A	Aca	Gca	3	3	AY.102	0.00008
ORF1ab/nsp3	1036	T1036I	aCa	aTa	3	3	AY.108	0.003308
ORF1ab/nsp3	1036	T1036A	Aca	Gca	3	3	AY.25	0.000018
ORF1ab/nsp3	1036	T1036I	aCa	aTa	3	3	AY.28	0.005671
ORF1ab/nsp3	1036	T1036A	Aca	Gca	3	3	AY.29	0.000047
ORF1ab/nsp3	1036	T1036I	aCa	aTa	3	3	AY.30	0.001187
ORF1ab/nsp3	1036	T1036I	aCa	aTa	3	3	AY.4.5	0.000322
ORF1ab/nsp3	1036	T1036A	Aca	Gca	3	3	AY.44	0.000018
ORF1ab/nsp3	1036	T1036I	aCa	aTa	3	3	AY.46.2	0.001906
ORF1ab/nsp3	1036	T1036I	aCa	aTa	3	3	AY.55	0.002752
ORF1ab/nsp3	1036	T1036A	Aca	Gca	3	3	B.1	0.000027
ORF1ab/nsp3	1036	T1036K	aCa	aAa	3	3	B.1.1.222	0.000612
ORF1ab/nsp3	1036	T1036I	aCa	aTa	3	3	B.1.1.232	0.005445
ORF1ab/nsp3	1036	T1036I	aCa	aTa	3	3	B.1.1.25	0.001706
ORF1ab/nsp3	1036	T1036I	aCa	aTa	3	3	B.1.1.311	0.001074
ORF1ab/nsp3	1036	T1036A	Aca	Gca	3	3	B.1.1.39	0.001529
ORF1ab/nsp3	1036	T1036I	aCa	aTa	3	3	B.1.1.434	0.001046
ORF1ab/nsp3	1036	T1036I	aCa	aTa	3	3	B.1.1.50	0.002037
ORF1ab/nsp3	1036	T1036I	aCa	aTa	3	3	B.1.1.526	0.010638
ORF1ab/nsp3	1036	T1036T	acA	acT	2	3	B.1.1.7	0.000002
ORF1ab/nsp3	1036	T1036del1	acA	ac-	2	3	B.1.1.7	0.000002
ORF1ab/nsp3	1036	T1036T	acA	acG	1	3	B.1.1.7	0.000001
ORF1ab/nsp3	1036	T1036del1	aCa	a-a	1	3	B.1.1.7	0.000001
ORF1ab/nsp3	1036	T1036I	aCa	aTa	3	3	B.1.110	0.013575
ORF1ab/nsp3	1036	T1036I	aCa	aTa	3	3	B.1.111	0.003525
ORF1ab/nsp3	1036	T1036S	Aca	Tca	3	3	B.1.160	0.000094
ORF1ab/nsp3	1036	T1036I	aCa	aTa	3	3	B.1.160.18	0.021898
ORF1ab/nsp3	1036	T1036I	aCa	aTa	3	3	B.1.206	0.002447
ORF1ab/nsp3	1036	T1036I	aCa	aTa	3	3	B.1.258.14	0.002941
ORF1ab/nsp3	1036	T1036del	ACA	---	3	3	B.1.36	0.000438
ORF1ab/nsp3	1036	T1036K	aCa	aAa	3	3	B.1.429	0.000071
ORF1ab/nsp3	1036	T1036I	aCa	aTa	3	3	B.1.433	0.009585
ORF1ab/nsp3	1036	T1036I	aCa	aTa	3	3	B.1.466.2	0.001174
ORF1ab/nsp3	1036	T1036I	aCa	aTa	3	3	B.1.576	0.00272
ORF1ab/nsp3	1036	T1036I	aCa	aTa	3	3	B.1.582	0.001472
ORF1ab/nsp3	1036	T1036I	aCa	aTa	3	3	B.1.595	0.000783
ORF1ab/nsp3	1036	T1036K	aCa	aAa	3	3	B.1.617.2	0.000011
ORF1ab/nsp3	1036	T1036I	aCa	aTa	3	3	B.1.625	0.007059
ORF1ab/nsp3	1036	T1036I	aCa	aTa	3	3	B.1.637	0.000219
ORF1ab/nsp3	1036	T1036I	aCa	aTa	3	3	Q.1	0.000379
ORF1ab/nsp3	1036	T1036I	aCa	aTa	2	2	A	0.000774
ORF1ab/nsp3	1036	T1036I	aCa	aTa	2	2	A.2.5.2	0.003145
ORF1ab/nsp3	1036	T1036I	aCa	aTa	2	2	AD.2	0.000438
ORF1ab/nsp3	1036	T1036I	aCa	aTa	2	2	AW.1	0.006098
ORF1ab/nsp3	1036	T1036del	ACA	---	2	2	AY.102	0.000053
ORF1ab/nsp3	1036	T1036I	aCa	aTa	2	2	AY.104	0.003968
ORF1ab/nsp3	1036	T1036I	aCa	aTa	2	2	AY.106	0.00067
ORF1ab/nsp3	1036	T1036T	acA	acG	2	2	AY.12	0.000632
ORF1ab/nsp3	1036	T1036I	aCa	aTa	2	2	AY.120.1	0.000642
ORF1ab/nsp3	1036	T1036I	aCa	aTa	2	2	AY.120.2.1	0.000997
ORF1ab/nsp3	1036	T1036I	aCa	aTa	2	2	AY.23.1	0.000835
ORF1ab/nsp3	1036	T1036I	aCa	aTa	2	2	AY.39.2	0.003082
ORF1ab/nsp3	1036	T1036I	aCa	aTa	2	2	AY.73	0.001331
ORF1ab/nsp3	1036	T1036I	aCa	aTa	2	2	AY.74	0.000231
ORF1ab/nsp3	1036	T1036I	aCa	aTa	2	2	AY.77	0.002255
ORF1ab/nsp3	1036	T1036I	aCa	aTa	2	2	AY.9.1	0.000167
ORF1ab/nsp3	1036	T1036I	aCa	aTa	2	2	AY.90	0.001369
ORF1ab/nsp3	1036	T1036I	aCa	aTa	2	2	AY.94	0.000885
ORF1ab/nsp3	1036	T1036del1	acA	ac-	1	2	B.1	0.000009
ORF1ab/nsp3	1036	T1036del1	Aca	-ca	1	2	B.1	0.000009
ORF1ab/nsp3	1036	T1036I	aCa	aTa	2	2	B.1.1.216	0.001781
ORF1ab/nsp3	1036	T1036I	aCa	aTa	2	2	B.1.1.289	0.004167
ORF1ab/nsp3	1036	T1036I	aCa	aTa	2	2	B.1.1.316	0.00185
ORF1ab/nsp3	1036	T1036I	aCa	aTa	2	2	B.1.1.318	0.000604
ORF1ab/nsp3	1036	T1036I	aCa	aTa	2	2	B.1.1.37	0.000386
ORF1ab/nsp3	1036	T1036I	aCa	aTa	2	2	B.1.1.397	0.004505
ORF1ab/nsp3	1036	T1036I	aCa	aTa	2	2	B.1.1.398	0.006452
ORF1ab/nsp3	1036	T1036I	aCa	aTa	2	2	B.1.1.417	0.005405
ORF1ab/nsp3	1036	T1036I	aCa	aTa	2	2	B.1.1.63	0.000772
ORF1ab/nsp3	1036	T1036I	aCa	aTa	2	2	B.1.177.12	0.000303
ORF1ab/nsp3	1036	T1036I	aCa	aTa	2	2	B.1.177.15	0.001262
ORF1ab/nsp3	1036	T1036I	aCa	aTa	2	2	B.1.177.19	0.002861
ORF1ab/nsp3	1036	T1036I	aCa	aTa	2	2	B.1.177.60	0.000437
ORF1ab/nsp3	1036	T1036I	aCa	aTa	2	2	B.1.177.73	0.001133
ORF1ab/nsp3	1036	T1036del	ACA	---	2	2	B.1.2	0.000018
ORF1ab/nsp3	1036	T1036A	Aca	Gca	2	2	B.1.2	0.000018
ORF1ab/nsp3	1036	T1036I	aCa	aTa	2	2	B.1.236	0.004107
ORF1ab/nsp3	1036	T1036I	aCa	aTa	2	2	B.1.36.16	0.002849
ORF1ab/nsp3	1036	T1036I	aCa	aTa	2	2	B.1.36.18	0.00084
ORF1ab/nsp3	1036	T1036I	aCa	aTa	2	2	B.1.36.8	0.002
ORF1ab/nsp3	1036	T1036I	aCa	aTa	2	2	B.1.369	0.00057
ORF1ab/nsp3	1036	T1036I	aCa	aTa	2	2	B.1.400	0.000858
ORF1ab/nsp3	1036	T1036I	aCa	aTa	2	2	B.1.409	0.001563
ORF1ab/nsp3	1036	T1036I	aCa	aTa	2	2	B.1.422	0.001625
ORF1ab/nsp3	1036	T1036I	aCa	aTa	2	2	B.1.438.1	0.000215
ORF1ab/nsp3	1036	T1036I	aCa	aTa	2	2	B.1.471	0.005464
ORF1ab/nsp3	1036	T1036I	aCa	aTa	2	2	B.1.499	0.002101
ORF1ab/nsp3	1036	T1036I	aCa	aTa	2	2	B.1.509	0.001732
ORF1ab/nsp3	1036	T1036I	aCa	aTa	2	2	B.1.561	0.000794
ORF1ab/nsp3	1036	T1036I	aCa	aTa	2	2	B.1.596.1	0.018692
ORF1ab/nsp3	1036	T1036I	aCa	aTa	2	2	B.1.602	0.013072
ORF1ab/nsp3	1036	T1036T	acA	acT	2	2	B.1.617.2	0.000008
ORF1ab/nsp3	1036	T1036I	aCa	aTa	2	2	B.1.627	0.00404
ORF1ab/nsp3	1036	T1036I	aCa	aTa	2	2	B.45	0.007663
ORF1ab/nsp3	1036	T1036I	aCa	aTa	2	2	C.14	0.008658
ORF1ab/nsp3	1036	T1036I	aCa	aTa	2	2	C.18	0.005181
ORF1ab/nsp3	1036	T1036I	aCa	aTa	2	2	C.23	0.011628
ORF1ab/nsp3	1036	T1036I	aCa	aTa	2	2	C.36	0.001821
ORF1ab/nsp3	1036	T1036T	acA	acT	1	2	D.2	0.000075
ORF1ab/nsp3	1036	T1036T	acA	acG	1	2	D.2	0.000075
ORF1ab/nsp3	1036	T1036A	Aca	Gca	2	2	P.1	0.000032
ORF1ab/nsp3	1036	T1036T	acA	acC	1	2	P.1	0.000016
ORF1ab/nsp3	1036	T1036T	acA	acG	1	2	P.1	0.000016
ORF1ab/nsp3	1036	T1036I	aCa	aTa	2	2	Q.8	0.00033
ORF1ab/nsp3	1036	T1036K	aCa	aAa	1	1		0.055556
ORF1ab/nsp3	1036	T1036I	aCa	aTa	1	1	A.1	0.000282
ORF1ab/nsp3	1036	T1036I	aCa	aTa	1	1	A.2.4	0.003367
ORF1ab/nsp3	1036	T1036I	aCa	aTa	1	1	A.27	0.001656
ORF1ab/nsp3	1036	T1036T	acA	acG	1	1	A.27	0.001656
ORF1ab/nsp3	1036	T1036I	aCa	aTa	1	1	A.4	0.012821
ORF1ab/nsp3	1036	T1036L	ACA	CTT	1	1	All	0
ORF1ab/nsp3	1036	T1036V	ACa	GTa	1	1	All	0
ORF1ab/nsp3	1036	T1036P	Aca	Cca	1	1	All	0
ORF1ab/nsp3	1036	T1036I	aCa	aTa	1	1	AY.1	0.000396
ORF1ab/nsp3	1036	T1036I	aCa	aTa	1	1	AY.101	0.00049
ORF1ab/nsp3	1036	T1036K	aCa	aAa	1	1	AY.103	0.000006
ORF1ab/nsp3	1036	T1036I	aCa	aTa	1	1	AY.105	0.000643
ORF1ab/nsp3	1036	T1036T	acA	acG	1	1	AY.111	0.000183
ORF1ab/nsp3	1036	T1036I	aCa	aTa	1	1	AY.114	0.000231
ORF1ab/nsp3	1036	T1036A	Aca	Gca	1	1	AY.117	0.000085
ORF1ab/nsp3	1036	T1036del1	Aca	-ca	1	1	AY.119	0.000035
ORF1ab/nsp3	1036	T1036A	Aca	Gca	1	1	AY.12	0.000316
ORF1ab/nsp3	1036	T1036T	acA	acG	1	1	AY.120.1	0.000321
ORF1ab/nsp3	1036	T1036I	aCa	aTa	1	1	AY.120.2	0.001285
ORF1ab/nsp3	1036	T1036I	aCa	aTa	1	1	AY.13	0.000161
ORF1ab/nsp3	1036	T1036I	aCa	aTa	1	1	AY.15	0.002222
ORF1ab/nsp3	1036	T1036I	aCa	aTa	1	1	AY.19	0.00114
ORF1ab/nsp3	1036	T1036T	acA	acT	1	1	AY.20	0.000039
ORF1ab/nsp3	1036	T1036del	ACA	---	1	1	AY.20	0.000039
ORF1ab/nsp3	1036	T1036K	aCa	aAa	1	1	AY.23.1	0.000417
ORF1ab/nsp3	1036	T1036del	ACA	---	1	1	AY.25	0.000006
ORF1ab/nsp3	1036	T1036K	aCa	aAa	1	1	AY.3	0.00001
ORF1ab/nsp3	1036	T1036T	acA	acG	1	1	AY.3	0.00001
ORF1ab/nsp3	1036	T1036I	aCa	aTa	1	1	AY.32	0.000532
ORF1ab/nsp3	1036	T1036A	Aca	Gca	1	1	AY.33	0.000067
ORF1ab/nsp3	1036	T1036I	aCa	aTa	1	1	AY.36	0.000148
ORF1ab/nsp3	1036	T1036del	ACA	---	1	1	AY.36	0.000148
ORF1ab/nsp3	1036	T1036K	aCa	aAa	1	1	AY.39.1	0.00004
ORF1ab/nsp3	1036	T1036del1	acA	ac-	1	1	AY.4	0.000002
ORF1ab/nsp3	1036	T1036I	aCa	aTa	1	1	AY.4.3	0.000842
ORF1ab/nsp3	1036	T1036del	ACA	---	1	1	AY.4.3	0.000842
ORF1ab/nsp3	1036	T1036del	ACA	---	1	1	AY.42	0.00004
ORF1ab/nsp3	1036	T1036K	aCa	aAa	1	1	AY.44	0.000006
ORF1ab/nsp3	1036	T1036del	ACA	---	1	1	AY.46.6	0.000072
ORF1ab/nsp3	1036	T1036I	aCa	aTa	1	1	AY.5.3	0.000337
ORF1ab/nsp3	1036	T1036I	aCa	aTa	1	1	AY.54	0.000095
ORF1ab/nsp3	1036	T1036I	aCa	aTa	1	1	AY.59	0.00053
ORF1ab/nsp3	1036	T1036P	Aca	Cca	1	1	AY.59	0.00053
ORF1ab/nsp3	1036	T1036I	aCa	aTa	1	1	AY.61	0.000105
ORF1ab/nsp3	1036	T1036A	Aca	Gca	1	1	AY.61	0.000105
ORF1ab/nsp3	1036	T1036V	ACa	GTa	1	1	AY.62	0.000436
ORF1ab/nsp3	1036	T1036I	aCa	aTa	1	1	AY.68	0.000274
ORF1ab/nsp3	1036	T1036I	aCa	aTa	1	1	AY.7.2	0.000559
ORF1ab/nsp3	1036	T1036I	aCa	aTa	1	1	AY.70	0.000209
ORF1ab/nsp3	1036	T1036del	ACA	---	1	1	AY.71	0.000475
ORF1ab/nsp3	1036	T1036I	aCa	aTa	1	1	AY.71	0.000475
ORF1ab/nsp3	1036	T1036T	acA	acG	1	1	AY.75	0.000056
ORF1ab/nsp3	1036	T1036I	aCa	aTa	1	1	AY.75	0.000056
ORF1ab/nsp3	1036	T1036A	Aca	Gca	1	1	AY.75.1	0.00018
ORF1ab/nsp3	1036	T1036del	ACA	---	1	1	AY.85	0.000427
ORF1ab/nsp3	1036	T1036I	aCa	aTa	1	1	AY.86	0.00083
ORF1ab/nsp3	1036	T1036I	aCa	aTa	1	1	AY.87	0.000833
ORF1ab/nsp3	1036	T1036I	aCa	aTa	1	1	AY.88	0.000884
ORF1ab/nsp3	1036	T1036del	ACA	---	1	1	B.1.1	0.000018
ORF1ab/nsp3	1036	T1036T	acA	acG	1	1	B.1.1	0.000018
ORF1ab/nsp3	1036	T1036I	aCa	aTa	1	1	B.1.1.101	0.01
ORF1ab/nsp3	1036	T1036I	aCa	aTa	1	1	B.1.1.12	0.007463
ORF1ab/nsp3	1036	T1036del	ACA	---	1	1	B.1.1.139	0.022727
ORF1ab/nsp3	1036	T1036I	aCa	aTa	1	1	B.1.1.141	0.002012
ORF1ab/nsp3	1036	T1036S	Aca	Tca	1	1	B.1.1.161	0.003534
ORF1ab/nsp3	1036	T1036T	acA	acG	1	1	B.1.1.164	0.005155
ORF1ab/nsp3	1036	T1036I	aCa	aTa	1	1	B.1.1.164	0.005155
ORF1ab/nsp3	1036	T1036I	aCa	aTa	1	1	B.1.1.189	0.001513
ORF1ab/nsp3	1036	T1036I	aCa	aTa	1	1	B.1.1.192	0.002309
ORF1ab/nsp3	1036	T1036I	aCa	aTa	1	1	B.1.1.198	0.001468
ORF1ab/nsp3	1036	T1036I	aCa	aTa	1	1	B.1.1.204	0.00304
ORF1ab/nsp3	1036	T1036I	aCa	aTa	1	1	B.1.1.207	0.001182
ORF1ab/nsp3	1036	T1036I	aCa	aTa	1	1	B.1.1.210	0.005714
ORF1ab/nsp3	1036	T1036A	Aca	Gca	1	1	B.1.1.214	0.000055
ORF1ab/nsp3	1036	T1036I	aCa	aTa	1	1	B.1.1.231	0.003096
ORF1ab/nsp3	1036	T1036I	aCa	aTa	1	1	B.1.1.243	0.004082
ORF1ab/nsp3	1036	T1036I	aCa	aTa	1	1	B.1.1.26	0.005236
ORF1ab/nsp3	1036	T1036I	aCa	aTa	1	1	B.1.1.263	0.001558
ORF1ab/nsp3	1036	T1036I	aCa	aTa	1	1	B.1.1.274	0.005051
ORF1ab/nsp3	1036	T1036A	Aca	Gca	1	1	B.1.1.28	0.000311
ORF1ab/nsp3	1036	T1036I	aCa	aTa	1	1	B.1.1.283	0.023256
ORF1ab/nsp3	1036	T1036I	aCa	aTa	1	1	B.1.1.286	0.002899
ORF1ab/nsp3	1036	T1036I	aCa	aTa	1	1	B.1.1.298	0.000862
ORF1ab/nsp3	1036	T1036K	aCA	aAG	1	1	B.1.1.306	0.000438
ORF1ab/nsp3	1036	T1036I	aCa	aTa	1	1	B.1.1.33	0.000421
ORF1ab/nsp3	1036	T1036I	aCa	aTa	1	1	B.1.1.340	0.045455
ORF1ab/nsp3	1036	T1036I	aCa	aTa	1	1	B.1.1.344	0.010753
ORF1ab/nsp3	1036	T1036I	aCa	aTa	1	1	B.1.1.351	0.002793
ORF1ab/nsp3	1036	T1036K	aCa	aAa	1	1	B.1.1.357	0.125
ORF1ab/nsp3	1036	T1036I	aCa	aTa	1	1	B.1.1.363	0.005988
ORF1ab/nsp3	1036	T1036I	aCa	aTa	1	1	B.1.1.372	0.000689
ORF1ab/nsp3	1036	T1036I	aCa	aTa	1	1	B.1.1.374	0.002375
ORF1ab/nsp3	1036	T1036I	aCa	aTa	1	1	B.1.1.429	0.004608
ORF1ab/nsp3	1036	T1036I	aCa	aTa	1	1	B.1.1.44	0.00241
ORF1ab/nsp3	1036	T1036I	aCa	aTa	1	1	B.1.1.523	0.001563
ORF1ab/nsp3	1036	T1036I	aCa	aTa	1	1	B.1.1.528	0.004808
ORF1ab/nsp3	1036	T1036I	aCa	aTa	1	1	B.1.1.54	0.003021
ORF1ab/nsp3	1036	T1036I	aCa	aTa	1	1	B.1.1.56	0.017857
ORF1ab/nsp3	1036	T1036del	ACA	---	1	1	B.1.1.63	0.000386
ORF1ab/nsp3	1036	T1036L	ACA	CTT	1	1	B.1.1.7	0.000001
ORF1ab/nsp3	1036	T1036I	aCa	aTa	1	1	B.1.1.70	0.000341
ORF1ab/nsp3	1036	T1036I	aCa	aTa	1	1	B.1.108	0.005814
ORF1ab/nsp3	1036	T1036T	acA	acG	1	1	B.1.110.3	0.000718
ORF1ab/nsp3	1036	T1036I	aCa	aTa	1	1	B.1.126	0.001276
ORF1ab/nsp3	1036	T1036I	aCa	aTa	1	1	B.1.157	0.002985
ORF1ab/nsp3	1036	T1036I	aCa	aTa	1	1	B.1.160.14	0.002119
ORF1ab/nsp3	1036	T1036I	aCa	aTa	1	1	B.1.160.22	0.006757
ORF1ab/nsp3	1036	T1036I	aCa	aTa	1	1	B.1.160.23	0.004831
ORF1ab/nsp3	1036	T1036I	aCa	aTa	1	1	B.1.160.30	0.002976
ORF1ab/nsp3	1036	T1036T	acA	acG	1	1	B.1.160.9	0.007194
ORF1ab/nsp3	1036	T1036I	aCa	aTa	1	1	B.1.164	0.014925
ORF1ab/nsp3	1036	T1036del1	aCa	a-a	1	1	B.1.177	0.000013
ORF1ab/nsp3	1036	T1036I	aCa	aTa	1	1	B.1.177.10	0.000878
ORF1ab/nsp3	1036	T1036I	aCa	aTa	1	1	B.1.177.2	0.004545
ORF1ab/nsp3	1036	T1036I	aCa	aTa	1	1	B.1.177.21	0.000076
ORF1ab/nsp3	1036	T1036I	aCa	aTa	1	1	B.1.177.31	0.011494
ORF1ab/nsp3	1036	T1036I	aCa	aTa	1	1	B.1.177.33	0.001645
ORF1ab/nsp3	1036	T1036I	aCa	aTa	1	1	B.1.177.44	0.000519
ORF1ab/nsp3	1036	T1036I	aCa	aTa	1	1	B.1.177.50	0.004695
ORF1ab/nsp3	1036	T1036I	aCa	aTa	1	1	B.1.177.57	0.000281
ORF1ab/nsp3	1036	T1036I	aCa	aTa	1	1	B.1.177.58	0.001332
ORF1ab/nsp3	1036	T1036K	aCa	aAa	1	1	B.1.177.65	0.000665
ORF1ab/nsp3	1036	T1036I	aCa	aTa	1	1	B.1.177.69	0.001484
ORF1ab/nsp3	1036	T1036T	acA	acG	1	1	B.1.177.75	0.001041
ORF1ab/nsp3	1036	T1036I	aCa	aTa	1	1	B.1.177.79	0.002342
ORF1ab/nsp3	1036	T1036A	Aca	Gca	1	1	B.1.177.87	0.000728
ORF1ab/nsp3	1036	T1036K	aCa	aAa	1	1	B.1.206	0.000816
ORF1ab/nsp3	1036	T1036del1	acA	ac-	1	1	B.1.214.2	0.0006
ORF1ab/nsp3	1036	T1036K	aCa	aAa	1	1	B.1.214.3	0.007143
ORF1ab/nsp3	1036	T1036I	aCa	aTa	1	1	B.1.214.3	0.007143
ORF1ab/nsp3	1036	T1036I	aCa	aTa	1	1	B.1.221.2	0.004016
ORF1ab/nsp3	1036	T1036I	aCa	aTa	1	1	B.1.232	0.000537
ORF1ab/nsp3	1036	T1036T	acA	acC	1	1	B.1.232	0.000537
ORF1ab/nsp3	1036	T1036I	aCa	aTa	1	1	B.1.235	0.002519
ORF1ab/nsp3	1036	T1036I	aCa	aTa	1	1	B.1.237	0.004975
ORF1ab/nsp3	1036	T1036del1	acA	ac-	1	1	B.1.258	0.000067
ORF1ab/nsp3	1036	T1036I	aCa	aTa	1	1	B.1.258.11	0.000396
ORF1ab/nsp3	1036	T1036I	aCa	aTa	1	1	B.1.260	0.003344
ORF1ab/nsp3	1036	T1036K	aCa	aAa	1	1	B.1.284	0.013158
ORF1ab/nsp3	1036	T1036I	aCa	aTa	1	1	B.1.284	0.013158
ORF1ab/nsp3	1036	T1036I	aCa	aTa	1	1	B.1.324	0.001605
ORF1ab/nsp3	1036	T1036I	aCa	aTa	1	1	B.1.336	0.002439
ORF1ab/nsp3	1036	T1036I	aCa	aTa	1	1	B.1.346	0.001311
ORF1ab/nsp3	1036	T1036I	aCa	aTa	1	1	B.1.349	0.000715
ORF1ab/nsp3	1036	T1036K	aCa	aAa	1	1	B.1.36	0.000146
ORF1ab/nsp3	1036	T1036I	aCa	aTa	1	1	B.1.36.1	0.00114
ORF1ab/nsp3	1036	T1036I	aCa	aTa	1	1	B.1.36.19	0.009259
ORF1ab/nsp3	1036	T1036I	aCa	aTa	1	1	B.1.36.24	0.006173
ORF1ab/nsp3	1036	T1036A	Aca	Gca	1	1	B.1.36.8	0.001
ORF1ab/nsp3	1036	T1036I	aCa	aTa	1	1	B.1.367	0.000792
ORF1ab/nsp3	1036	T1036I	aCa	aTa	1	1	B.1.371	0.001122
ORF1ab/nsp3	1036	T1036I	aCa	aTa	1	1	B.1.381	0.007812
ORF1ab/nsp3	1036	T1036I	aCa	aTa	1	1	B.1.403	0.003268
ORF1ab/nsp3	1036	T1036I	aCa	aTa	1	1	B.1.416	0.001269
ORF1ab/nsp3	1036	T1036I	aCa	aTa	1	1	B.1.426	0.001009
ORF1ab/nsp3	1036	T1036I	aCa	aTa	1	1	B.1.435	0.011364
ORF1ab/nsp3	1036	T1036I	aCa	aTa	1	1	B.1.436	0.001029
ORF1ab/nsp3	1036	T1036I	aCa	aTa	1	1	B.1.496	0.125
ORF1ab/nsp3	1036	T1036I	aCa	aTa	1	1	B.1.497	0.000315
ORF1ab/nsp3	1036	T1036I	aCa	aTa	1	1	B.1.523	0.002451
ORF1ab/nsp3	1036	T1036I	aCa	aTa	1	1	B.1.533	0.009615
ORF1ab/nsp3	1036	T1036I	aCa	aTa	1	1	B.1.556	0.007519
ORF1ab/nsp3	1036	T1036I	aCa	aTa	1	1	B.1.564	0.000426
ORF1ab/nsp3	1036	T1036I	aCa	aTa	1	1	B.1.568	0.001111
ORF1ab/nsp3	1036	T1036I	aCa	aTa	1	1	B.1.592	0.04
ORF1ab/nsp3	1036	T1036I	aCa	aTa	1	1	B.1.597	0.00463
ORF1ab/nsp3	1036	T1036I	aCa	aTa	1	1	B.1.609	0.000479
ORF1ab/nsp3	1036	T1036del1	acA	ac-	1	1	B.1.617.2	0.000004
ORF1ab/nsp3	1036	T1036del	ACA	---	1	1	B.1.617.2	0.000004
ORF1ab/nsp3	1036	T1036I	aCa	aTa	1	1	B.1.621.1	0.000506
ORF1ab/nsp3	1036	T1036I	aCa	aTa	1	1	B.1.636	0.006711
ORF1ab/nsp3	1036	T1036del	ACA	---	1	1	B.1.637	0.000073
ORF1ab/nsp3	1036	T1036T	acA	acG	1	1	B.1.9.5	0.005682
ORF1ab/nsp3	1036	T1036del	ACA	---	1	1	B.15	0.017544
ORF1ab/nsp3	1036	T1036I	aCa	aTa	1	1	B.58	0.010204
ORF1ab/nsp3	1036	T1036I	aCa	aTa	1	1	C.33	0.058824
ORF1ab/nsp3	1036	T1036K	aCa	aAa	1	1	C.35	0.000774
ORF1ab/nsp3	1036	T1036I	aCa	aTa	1	1	C.36.3	0.000567
ORF1ab/nsp3	1036	T1036A	Aca	Gca	1	1	D.2	0.000075
ORF1ab/nsp3	1036	T1036I	aCa	aTa	1	1	D.3	0.005917
ORF1ab/nsp3	1036	T1036I	aCa	aTa	1	1	D.5	0.004975
ORF1ab/nsp3	1036	T1036I	aCa	aTa	1	1	N.8	0.03125
ORF1ab/nsp3	1036	T1036del	ACA	---	1	1	P.1.1	0.000318
ORF1ab/nsp3	1036	T1036I	aCa	aTa	1	1	P.1.16	0.000374
ORF1ab/nsp3	1036	T1036I	aCa	aTa	1	1	P.1.17	0.000162
ORF1ab/nsp3	1036	T1036I	aCa	aTa	1	1	P.1.8	0.004785
ORF1ab/nsp3	1036	T1036T	acA	acG	1	1	Q.4	0.000455
ORF1ab/nsp3	1036	T1036K	aCa	aAa	1	1	Q.8	0.000165
ORF1ab/nsp3	1036	T1036T	acA	acG	1	1	Q.8	0.000165
ORF1ab/nsp3	1036	T1036I	aCa	aTa	1	1	Z.1	0.00289

CoV-GLUE is still in development. CoV-GLUE was originally developed as part of COG-UK by Josh Singer using the GLUE framework at the MRC-University of Glasgow Centre for Virus Research (CVR). In 2021 it was redeveloped by Richard Orton to scale to the millions of genome sequences available. We acknowledge support from the MRC (MC_UU_12014/12), WT (220977/Z/20/Z) and UKRI G2P (MR/W005611/1). Please contact Richard Orton with any queries: Richard.Orton@glasgow.ac.uk

CoV-GLUE uses sequence data from GISAID. GISAID data provided via this web application is subject to GISAID's Terms and Conditions.